├── .gitignore ├── README.md ├── TrackRAD2025 - Structured description.pdf ├── baseline-algorithm ├── Dockerfile ├── inference.py ├── model.py ├── requirements.txt ├── resources │ └── .gitkeep └── save.sh ├── dataset ├── .gitkeep ├── example │ └── Z_001 │ │ ├── b-field-strength.json │ │ ├── frame-rate.json │ │ ├── images │ │ └── Z_001_frames.mha │ │ ├── scanned-region.json │ │ └── targets │ │ ├── Z_001_first_label.mha │ │ └── Z_001_labels.mha ├── labeled │ └── .gitkeep ├── preliminary │ └── .gitkeep ├── testing │ └── .gitkeep └── unlabeled │ └── .gitkeep ├── evaluation ├── Dockerfile ├── evaluate.py ├── helpers.py ├── minimal_mha_simpleitk.py ├── minimal_mha_simpleitk_test.ipynb ├── monai_metrics.py ├── monai_metrics_test.ipynb ├── requirements.txt └── save.sh ├── images ├── .gitkeep ├── GIF_overlay_preds_mediastinum02.mp4 └── header.jpeg ├── pages ├── Data.md ├── Introduction.md ├── Metrics.md ├── Organizers.md ├── Task.md └── Timeline.md ├── scripts ├── prepare_example.ipynb ├── prepare_staple_masks.ipynb ├── proprietary_format_conversion │ ├── mridian_cine_data │ │ ├── README.md │ │ ├── convert_dat │ │ │ ├── ConvertSendExternalToMatlabVolume.m │ │ │ ├── WriteMha.m │ │ │ ├── data_test │ │ │ │ └── your_data_here.txt │ │ │ └── main_convert_cine.m │ │ └── convert_raw_and_roi │ │ │ ├── WriteMha.m │ │ │ ├── build_read_roi.sh │ │ │ ├── check_cpp_version │ │ │ ├── check_cpp_version.cpp │ │ │ ├── data_test │ │ │ └── your_data_here.txt │ │ │ ├── execute_read_roi.sh │ │ │ ├── installation │ │ │ └── Dockerfile │ │ │ ├── main_convert_raw.m │ │ │ ├── read-roi │ │ │ └── read-roi.cpp │ └── unity_cine_data │ │ ├── README.md │ │ └── convert_bin │ │ ├── classify_orientation_cnn_pxl.py │ │ ├── clean_up_misclassified.py │ │ ├── convert_bin_and_sort.py │ │ ├── data_test │ │ └── your_data_here.txt │ │ ├── installation │ │ ├── Dockerfile │ │ └── requirements.txt │ │ ├── main.sh │ │ └── orientation_model │ │ └── cnn_orientation_model_0.0016036431093155962.pth └── upload_dataset.ipynb 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