├── CellPhoneDB ├── CellPhoneDB.sh ├── PlotForFig5.r ├── cellphonedb_user_2019-12-10-13_16.db ├── dotplot_gene.txt └── heatmap_gene.txt ├── Data ├── DC_meta.txt ├── DC_spliced.npz ├── DC_unspliced.npz ├── TCR_meta.txt └── hs_hgnc_curated_tfs.txt ├── InferCNV └── inferCNV_code_for_NC.R ├── LICENSE ├── README.md ├── SCENIC ├── Readme.txt ├── SCENIC_regulon.py ├── pyscenic_ctx.sh └── pyscenic_grn.sh ├── Scanpy └── Basic_scanpy_analysis.py └── Scvelo └── RNA_Velocity_Scv.py /CellPhoneDB/CellPhoneDB.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Lan-lab/sc-GC/HEAD/CellPhoneDB/CellPhoneDB.sh -------------------------------------------------------------------------------- /CellPhoneDB/PlotForFig5.r: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Lan-lab/sc-GC/HEAD/CellPhoneDB/PlotForFig5.r 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