├── .Rbuildignore ├── .gitignore ├── DESCRIPTION ├── Laurae.Rproj ├── NAMESPACE ├── R ├── CRTreeForest.R ├── CRTreeForest_pred.R ├── CRTree_Forest_pred_internals.R ├── CascadeForest.R ├── CascadeForest_pred.R ├── DT2mat.R ├── DTcbind.R ├── DTcolsample.R ├── DTfillNA.R ├── DTrbind.R ├── DTsubsample.R ├── ExtraOpt.R ├── ExtraOpt_estimate.R ├── ExtraOpt_plot.R ├── ExtraOpt_prob.R ├── ExtraOpt_trainer.R ├── FastROC.R ├── FeatureLookup.R ├── GetPartyRules.R ├── Laurae.R ├── LauraeML.R ├── LauraeML_gblinear.R ├── LauraeML_gblinear_par.R ├── LauraeML_lgbreg.R ├── LauraeML_utils.R ├── Laurae_load.R ├── Lextravagenza.R ├── LogLoss.R ├── LossFunctions.R ├── MGScanning.R ├── MGScanning_pred.R ├── SymbolicLoss.R ├── bandwidth_rot.R ├── brewer.pal_extended.R ├── cbindlist.R ├── df_loss.R ├── get.max_acc.R ├── get.max_f1.R ├── get.max_fallout.R ├── get.max_kappa.R ├── get.max_mcc.R ├── get.max_missrate.R ├── get.max_precision.R ├── get.max_sensitivity.R ├── get.max_specificity.R ├── grid_arrange_shared_legend.R ├── interactive.SymbolicLoss.R ├── interactive.eda_RColorBrewer.R ├── interactive.eda_d3js.R ├── interactive.eda_ggplot.R ├── interactive.eda_plotly.R ├── interactive.eda_tree.R ├── kernel2d_est.R ├── kfold.R ├── lgbm.cv.R ├── lgbm.cv.prep.R ├── lgbm.fi.R ├── lgbm.fi.plot.R ├── lgbm.find.R ├── lgbm.metric.R ├── lgbm.predict.R ├── lgbm.train.R ├── mean2.R ├── nkfold.R ├── partial_dep.feature.R ├── partial_dep.obs.R ├── partial_dep.obs_all.R ├── partial_dep.plot.R ├── pass_tests.R ├── plot.max_acc.R ├── plot.max_f1.R ├── plot.max_fallout.R ├── plot.max_kappa.R ├── plot.max_mcc.R ├── plot.max_missrate.R ├── plot.max_precision.R ├── plot.max_sensitivity.R ├── plot.max_specificity.R ├── pred.Lextravagenza.R ├── predictor_xgb.R ├── prob.max_acc.R ├── prob.max_f1.R ├── prob.max_fallout.R ├── prob.max_kappa.R ├── prob.max_mcc.R ├── prob.max_missrate.R ├── prob.max_precision.R ├── prob.max_sensitivity.R ├── prob.max_specificity.R ├── read_sparse_csv.R ├── report.lm.R ├── report.xgb.R ├── report.xgb.helper.R ├── rule_double.R ├── rule_single.R ├── setDF.R ├── stat_smooth_func.R ├── tableplot_jpg.R ├── timer.R ├── timer_func.R ├── timer_func_print.R ├── tsne_grid.R ├── xgb.importance.interactive.R ├── xgb.max_acc.R ├── xgb.max_f1.R ├── xgb.max_fallout.R ├── xgb.max_kappa.R ├── xgb.max_mcc.R ├── xgb.max_missrate.R ├── xgb.max_precision.R ├── xgb.max_sensitivity.R ├── xgb.max_specificity.R ├── xgb.ncv.R ├── xgb.opt.depth.R ├── xgb.opt.utils.R ├── xgboard.dump.R ├── xgboard.eval.error.R ├── xgboard.eval.logloss.R ├── xgboard.init.R ├── xgboard.run.R ├── xgboard.time.R └── xgboard.xgb.R ├── README.md ├── demo ├── 00Index └── DeepForest_mnist.R ├── inst ├── board │ ├── xgboard.R │ └── xgboard_run.R └── template_rmd │ ├── LinearRegression.Rmd │ └── Xgboost.rmd └── man ├── CRTreeForest.Rd ├── CRTreeForest_pred.Rd ├── CRTree_Forest_pred_internals.Rd ├── CascadeForest.Rd ├── CascadeForest_pred.Rd ├── DT2mat.Rd ├── DTcbind.Rd ├── DTcolsample.Rd ├── DTfillNA.Rd ├── DTrbind.Rd ├── DTsubsample.Rd ├── ExtraOpt.Rd ├── FastROC.Rd ├── FeatureLookup.Rd ├── GetPartyRules.Rd ├── Laurae-package.Rd ├── LauraeML.Rd ├── LauraeML_gblinear.Rd ├── LauraeML_gblinear_par.Rd ├── LauraeML_lgbreg.Rd ├── LauraeML_utils.badlog.Rd ├── LauraeML_utils.badscore.Rd ├── LauraeML_utils.feat_sel.Rd ├── LauraeML_utils.lgb_data.Rd ├── LauraeML_utils.newlog.Rd ├── LauraeML_utils.xgb_data.Rd ├── Laurae_load.Rd ├── Lextravagenza.Rd ├── LogLoss.Rd ├── MGScanning.Rd ├── MGScanning_pred.Rd ├── SymbolicLoss.Rd ├── bandwidth_rot.Rd ├── brewer.pal_extended.Rd ├── cbindlist.Rd ├── df_acc.Rd ├── df_acc_bin.Rd ├── df_auc.Rd ├── df_logloss.Rd ├── df_mae.Rd ├── df_mape.Rd ├── df_mce.Rd ├── df_medae.Rd ├── df_medpae.Rd ├── df_mse.Rd ├── df_r.Rd ├── df_r2.Rd ├── df_rmse.Rd ├── df_spearman.Rd ├── get.max_acc.Rd ├── get.max_f1.Rd ├── get.max_fallout.Rd ├── get.max_kappa.Rd ├── get.max_mcc.Rd ├── get.max_missrate.Rd ├── get.max_precision.Rd ├── get.max_sensitivity.Rd ├── get.max_specificity.Rd ├── grid_arrange_shared_legend.Rd ├── interactive.SymbolicLoss.Rd ├── interactive.eda_RColorBrewer.Rd ├── interactive.eda_d3js.Rd ├── interactive.eda_ggplot.Rd ├── interactive.eda_plotly.Rd ├── interactive.eda_tree.Rd ├── kernel2d_est.Rd ├── kfold.Rd ├── lgbm.cv.Rd ├── lgbm.cv.prep.Rd ├── lgbm.fi.Rd ├── lgbm.fi.plot.Rd ├── lgbm.find.Rd ├── lgbm.metric.Rd ├── lgbm.predict.Rd ├── lgbm.train.Rd ├── loss_LKL.Rd ├── loss_LKL_grad.Rd ├── loss_LKL_hess.Rd ├── loss_LKL_math.Rd ├── loss_LKL_xgb.Rd ├── loss_LL.Rd ├── loss_LL_grad.Rd ├── loss_LL_hess.Rd ├── loss_LL_math.Rd ├── loss_LL_xgb.Rd ├── loss_MAE.Rd ├── loss_MAE_grad.Rd ├── loss_MAE_hess.Rd ├── loss_MAE_math.Rd ├── loss_MAE_xgb.Rd ├── loss_MCE.Rd ├── loss_MCE_grad.Rd ├── loss_MCE_hess.Rd ├── loss_MCE_math.Rd ├── loss_MCE_xgb.Rd ├── loss_MSE.Rd ├── loss_MSE_grad.Rd ├── loss_MSE_hess.Rd ├── loss_MSE_math.Rd ├── loss_MSE_xgb.Rd ├── loss_Poisson.Rd ├── loss_Poisson_grad.Rd ├── loss_Poisson_hess.Rd ├── loss_Poisson_math.Rd ├── loss_Poisson_xgb.Rd ├── mean2.Rd ├── nkfold.Rd ├── partial_dep.feature.Rd ├── partial_dep.obs.Rd ├── partial_dep.obs_all.Rd ├── partial_dep.plot.Rd ├── plotting.max_acc.Rd ├── plotting.max_f1.Rd ├── plotting.max_fallout.Rd ├── plotting.max_kappa.Rd ├── plotting.max_mcc.Rd ├── plotting.max_missrate.Rd ├── plotting.max_precision.Rd ├── plotting.max_sensitivity.Rd ├── plotting.max_specificity.Rd ├── pred.Lextravagenza.Rd ├── predictor_xgb.Rd ├── print_fp.Rd ├── print_hyb.Rd ├── print_int.Rd ├── print_multi.Rd ├── prob.max_acc.Rd ├── prob.max_f1.Rd ├── prob.max_fallout.Rd ├── prob.max_kappa.Rd ├── prob.max_mcc.Rd ├── prob.max_missrate.Rd ├── prob.max_precision.Rd ├── prob.max_sensitivity.Rd ├── prob.max_specificity.Rd ├── read_sparse_csv.Rd ├── report.lm.Rd ├── report.xgb.Rd ├── report.xgb.helper.Rd ├── rule_double.Rd ├── rule_single.Rd ├── setDF.Rd ├── stat_smooth_func.Rd ├── stat_smooth_func.plotly.Rd ├── tableplot_jpg.Rd ├── timer.Rd ├── timer_func.Rd ├── 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