├── LICENSE ├── README.md ├── setup.py └── src ├── bcf_vcf.py ├── helper_functions.py ├── hmm_functions.py ├── main.py ├── make_mutationrate.py └── make_test_data.py /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/LauritsSkov/Introgression-detection/HEAD/LICENSE -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/LauritsSkov/Introgression-detection/HEAD/README.md -------------------------------------------------------------------------------- /setup.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/LauritsSkov/Introgression-detection/HEAD/setup.py -------------------------------------------------------------------------------- /src/bcf_vcf.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/LauritsSkov/Introgression-detection/HEAD/src/bcf_vcf.py -------------------------------------------------------------------------------- /src/helper_functions.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/LauritsSkov/Introgression-detection/HEAD/src/helper_functions.py -------------------------------------------------------------------------------- /src/hmm_functions.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/LauritsSkov/Introgression-detection/HEAD/src/hmm_functions.py -------------------------------------------------------------------------------- /src/main.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/LauritsSkov/Introgression-detection/HEAD/src/main.py -------------------------------------------------------------------------------- /src/make_mutationrate.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/LauritsSkov/Introgression-detection/HEAD/src/make_mutationrate.py -------------------------------------------------------------------------------- /src/make_test_data.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/LauritsSkov/Introgression-detection/HEAD/src/make_test_data.py --------------------------------------------------------------------------------