├── .DS_Store ├── .gitignore ├── LICENSE ├── README.md ├── __pycache__ └── datasets.cpython-35.pyc ├── docs ├── .DS_Store ├── Makefile ├── _build │ ├── doctrees │ │ ├── continuous.doctree │ │ ├── decomposition.doctree │ │ ├── environment.pickle │ │ ├── index.doctree │ │ ├── install.doctree │ │ ├── tutorials.doctree │ │ ├── utils.doctree │ │ └── visualization.doctree │ └── html │ │ ├── .buildinfo │ │ ├── _sources │ │ ├── continuous.txt │ │ ├── decomposition.txt │ │ ├── index.txt │ │ ├── install.txt │ │ ├── tutorials.txt │ │ ├── utils.txt │ │ └── visualization.txt │ │ ├── _static │ │ ├── ajax-loader.gif │ │ ├── background_b01.png │ │ ├── basic.css │ │ ├── bizstyle.css │ │ ├── bizstyle.js │ │ ├── comment-bright.png │ │ ├── comment-close.png │ │ ├── comment.png │ │ ├── css3-mediaqueries.js │ │ ├── css3-mediaqueries_src.js │ │ ├── doctools.js │ │ ├── down-pressed.png │ │ ├── down.png │ │ ├── file.png │ │ ├── jquery-1.11.1.js │ │ ├── jquery.js │ │ ├── minus.png │ │ ├── plus.png │ │ ├── pygments.css │ │ ├── searchtools.js │ │ ├── underscore-1.3.1.js │ │ ├── underscore.js │ │ ├── up-pressed.png │ │ ├── up.png │ │ └── websupport.js │ │ ├── continuous.html │ │ ├── decomposition.html │ │ ├── genindex.html │ │ ├── index.html │ │ ├── install.html │ │ ├── objects.inv │ │ ├── py-modindex.html │ │ ├── search.html │ │ ├── searchindex.js │ │ ├── tutorials.html │ │ ├── utils.html │ │ └── visualization.html ├── conf.py ├── continuous.rst ├── decomposition.rst ├── index.rst ├── install.rst ├── make.bat ├── tutorials.rst ├── utils.rst └── visualization.rst ├── example.png ├── example.py ├── optrans ├── .DS_Store ├── __init__.py ├── __pycache__ │ ├── __init__.cpython-35.pyc │ └── __init__.cpython-36.pyc ├── continuous │ ├── __init__.py │ ├── __pycache__ │ │ ├── __init__.cpython-35.pyc │ │ ├── __init__.cpython-36.pyc │ │ ├── base.cpython-35.pyc │ │ ├── base.cpython-36.pyc │ │ ├── cdt.cpython-35.pyc │ │ ├── cdt.cpython-36.pyc │ │ ├── clot.cpython-35.pyc │ │ ├── clot.cpython-36.pyc │ │ ├── multiscale.cpython-35.pyc │ │ ├── multivot2d.cpython-35.pyc │ │ ├── radoncdt.cpython-35.pyc │ │ ├── radoncdt.cpython-36.pyc │ │ ├── spot2d.cpython-35.pyc │ │ ├── spot2d.cpython-36.pyc │ │ ├── vot2d.cpython-35.pyc │ │ └── vot2d.cpython-36.pyc │ ├── base.py │ ├── cdt.py │ ├── clot.py │ ├── radoncdt.py │ ├── spot2d.py │ └── vot2d.py ├── decomposition │ ├── __init__.py │ ├── __pycache__ │ │ ├── __init__.cpython-35.pyc │ │ ├── __init__.cpython-36.pyc │ │ ├── cca.cpython-35.pyc │ │ ├── cca.cpython-36.pyc │ │ ├── modes.cpython-35.pyc │ │ ├── modes.cpython-36.pyc │ │ ├── plda.cpython-35.pyc │ │ └── plda.cpython-36.pyc │ ├── cca.py │ ├── modes.py │ └── plda.py ├── utils │ ├── __init__.py │ ├── __pycache__ │ │ ├── __init__.cpython-35.pyc │ │ ├── __init__.cpython-36.pyc │ │ ├── data_utils.cpython-35.pyc │ │ ├── data_utils.cpython-36.pyc │ │ ├── validation.cpython-35.pyc │ │ └── validation.cpython-36.pyc │ ├── data_utils.py │ └── validation.py └── visualization │ ├── __init__.py │ ├── __pycache__ │ ├── __init__.cpython-35.pyc │ ├── __init__.cpython-36.pyc │ ├── visualize.cpython-35.pyc │ └── visualize.cpython-36.pyc │ └── visualize.py ├── tests ├── .DS_Store ├── 01_transform_basics │ ├── test_cdt.py │ ├── test_clot.py │ ├── test_compare.py │ ├── test_multivot2d.py │ ├── test_radoncdt.py │ ├── test_spot2d.py │ └── test_vot2d.py ├── 02_geodesics │ ├── test_cdt_geodesic.py │ └── test_radoncdt_geodesic.py ├── 03_pca │ ├── test_image_pca.py │ ├── test_image_pca.py~ │ └── test_radoncdt_pca.py ├── 04_plda │ ├── test_classify.py │ ├── test_gridsearch.py │ ├── test_plda.py │ └── test_radoncdt_plda.py ├── 05_visualization │ ├── test_histogram_image_plda.py │ ├── test_mode_image_pca.py │ ├── test_mode_rcdt_pca.py │ ├── test_mode_rcdt_plda.py │ └── test_plot_displacements2d.py ├── 06_correlation │ ├── __pycache__ │ │ └── test_cca.cpython-35.pyc │ ├── test_cca.py │ └── test_cca_image.py ├── load_adni.py ├── load_gaussians.py └── load_oasis.py └── tutorials ├── .ipynb_checkpoints 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