├── .gitignore ├── LICENSE ├── Makefile ├── README.md ├── combine_results.py ├── data ├── 16S-25 │ ├── .DS_Store │ ├── k5group0 │ │ ├── 16S_rRNA_database_Alphaproteobacteria-AB117967.seq │ │ ├── 16S_rRNA_database_Alphaproteobacteria-D14432.seq │ │ ├── 16S_rRNA_database_Alphaproteobacteria-D32229.seq │ │ ├── 16S_rRNA_database_Alphaproteobacteria-DQ305284.seq │ │ └── 16S_rRNA_database_Alphaproteobacteria-DQ499529.seq │ ├── k5group1 │ │ ├── 16S_rRNA_database_Alphaproteobacteria-AB246807.seq │ │ ├── 16S_rRNA_database_Alphaproteobacteria-AE009462.seq │ │ ├── 16S_rRNA_database_Alphaproteobacteria-AY904783.seq │ │ ├── 16S_rRNA_database_Alphaproteobacteria-AY972871.seq │ │ └── 16S_rRNA_database_Alphaproteobacteria-DQ341416.seq │ ├── k5group10 │ │ ├── 16S_rRNA_database_Alphaproteobacteria-AM084042.seq │ │ ├── 16S_rRNA_database_Alphaproteobacteria-AY468370.seq │ │ ├── 16S_rRNA_database_Alphaproteobacteria-AY569292.seq │ │ ├── 16S_rRNA_database_Alphaproteobacteria-DQ337571.seq │ │ └── 16S_rRNA_database_Alphaproteobacteria-X87272.seq │ ├── k5group11 │ │ ├── 16S_rRNA_database_Alphaproteobacteria-AJ318194.seq │ │ ├── 16S_rRNA_database_Alphaproteobacteria-AY624130.seq │ │ ├── 16S_rRNA_database_Alphaproteobacteria-D14501.seq │ │ ├── 16S_rRNA_database_Alphaproteobacteria-DQ645426.seq │ │ └── 16S_rRNA_database_Alphaproteobacteria-X94201.seq │ ├── k5group12 │ │ ├── 16S_rRNA_database_Alphaproteobacteria-AF408325.seq │ │ ├── 16S_rRNA_database_Alphaproteobacteria-AY601514.seq │ │ ├── 16S_rRNA_database_Alphaproteobacteria-AY904746.seq │ │ ├── 16S_rRNA_database_Alphaproteobacteria-DQ303311.seq │ │ └── 16S_rRNA_database_Alphaproteobacteria-L36222.seq │ ├── k5group13 │ │ ├── 16S_rRNA_database_Alphaproteobacteria-AB032356.seq │ │ ├── 16S_rRNA_database_Alphaproteobacteria-AY599912.seq │ │ ├── 16S_rRNA_database_Alphaproteobacteria-AY904740.seq │ │ ├── 16S_rRNA_database_Alphaproteobacteria-AY904752.seq │ │ └── 16S_rRNA_database_Alphaproteobacteria-DQ177525.seq │ ├── k5group14 │ │ ├── 16S_rRNA_database_Alphaproteobacteria-AB175632.seq │ │ ├── 16S_rRNA_database_Alphaproteobacteria-AJ431635.seq │ │ ├── 16S_rRNA_database_Alphaproteobacteria-AY372184.seq │ │ ├── 16S_rRNA_database_Alphaproteobacteria-AY500253.seq │ │ └── 16S_rRNA_database_Alphaproteobacteria-BA000040.seq │ ├── k5group15 │ │ ├── 16S_rRNA_database_Alphaproteobacteria-AB178392.seq │ │ ├── 16S_rRNA_database_Alphaproteobacteria-AY509218.seq │ │ ├── 16S_rRNA_database_Alphaproteobacteria-AY599678.seq │ │ ├── 16S_rRNA_database_Alphaproteobacteria-AY785315.seq │ │ └── 16S_rRNA_database_Alphaproteobacteria-DQ340858.seq │ ├── k5group16 │ │ ├── 16S_rRNA_database_Alphaproteobacteria-AB110710.seq │ │ ├── 16S_rRNA_database_Alphaproteobacteria-AB166735.seq │ │ ├── 16S_rRNA_database_Alphaproteobacteria-AF293377.seq │ │ ├── 16S_rRNA_database_Alphaproteobacteria-AY506539.seq │ │ └── 16S_rRNA_database_Alphaproteobacteria-UNP00774.seq │ ├── k5group17 │ │ ├── 16S_rRNA_database_Alphaproteobacteria-AJ810380.seq │ │ ├── 16S_rRNA_database_Alphaproteobacteria-AY513533.seq │ │ ├── 16S_rRNA_database_Alphaproteobacteria-AY568503.seq │ │ ├── 16S_rRNA_database_Alphaproteobacteria-AY697904.seq │ │ └── 16S_rRNA_database_Alphaproteobacteria-M84687.seq │ ├── k5group18 │ │ ├── 16S_rRNA_database_Alphaproteobacteria-AF220147.seq │ │ ├── 16S_rRNA_database_Alphaproteobacteria-AY512821.seq │ │ ├── 16S_rRNA_database_Alphaproteobacteria-AY628222.seq │ │ ├── 16S_rRNA_database_Alphaproteobacteria-DQ202330.seq │ │ └── 16S_rRNA_database_Alphaproteobacteria-DQ337574.seq │ ├── k5group19 │ │ ├── 16S_rRNA_database_Alphaproteobacteria-AF530468.seq │ │ ├── 16S_rRNA_database_Alphaproteobacteria-AJ920036.seq │ │ ├── 16S_rRNA_database_Alphaproteobacteria-AM229669.seq │ │ ├── 16S_rRNA_database_Alphaproteobacteria-DQ354613.seq │ │ └── 16S_rRNA_database_Alphaproteobacteria-L28944.seq │ ├── k5group2 │ │ ├── 16S_rRNA_database_Alphaproteobacteria-AE009201.seq │ │ ├── 16S_rRNA_database_Alphaproteobacteria-AY513495.seq │ │ ├── 16S_rRNA_database_Alphaproteobacteria-D30776.seq │ │ ├── 16S_rRNA_database_Alphaproteobacteria-DQ196416.seq │ │ └── 16S_rRNA_database_Alphaproteobacteria-DQ486985.seq │ ├── k5group20 │ │ ├── 16S_rRNA_database_Alphaproteobacteria-AB110711.seq │ │ ├── 16S_rRNA_database_Alphaproteobacteria-AJ431636.seq │ │ ├── 16S_rRNA_database_Alphaproteobacteria-AY875977.seq │ │ ├── 16S_rRNA_database_Alphaproteobacteria-X81185.seq │ │ └── 16S_rRNA_database_Alphaproteobacteria-X87167.seq │ ├── k5group21 │ │ ├── 16S_rRNA_database_Alphaproteobacteria-AF510612.seq │ │ ├── 16S_rRNA_database_Alphaproteobacteria-AJ420775.seq │ │ ├── 16S_rRNA_database_Alphaproteobacteria-AY599681.seq │ │ ├── 16S_rRNA_database_Alphaproteobacteria-L02887.seq │ │ └── 16S_rRNA_database_Alphaproteobacteria-X70401.seq │ ├── k5group22 │ │ ├── 16S_rRNA_database_Alphaproteobacteria-AB178419.seq │ │ ├── 16S_rRNA_database_Alphaproteobacteria-AY904750.seq │ │ ├── 16S_rRNA_database_Alphaproteobacteria-D13429.seq │ │ ├── 16S_rRNA_database_Alphaproteobacteria-DQ848137.seq │ │ └── 16S_rRNA_database_Alphaproteobacteria-M21293.seq │ ├── k5group23 │ │ ├── 16S_rRNA_database_Alphaproteobacteria-AF514705.seq │ │ ├── 16S_rRNA_database_Alphaproteobacteria-AJ550273.seq │ │ ├── 16S_rRNA_database_Alphaproteobacteria-AY904771.seq │ │ ├── 16S_rRNA_database_Alphaproteobacteria-DQ022832.seq │ │ └── 16S_rRNA_database_Alphaproteobacteria-DQ641912.seq │ ├── k5group24 │ │ ├── 16S_rRNA_database_Alphaproteobacteria-AF445712.seq │ │ ├── 16S_rRNA_database_Alphaproteobacteria-AY491064.seq │ │ ├── 16S_rRNA_database_Alphaproteobacteria-AY513529.seq │ │ ├── 16S_rRNA_database_Alphaproteobacteria-D14504.seq │ │ └── 16S_rRNA_database_Alphaproteobacteria-U12462.seq │ ├── k5group3 │ │ ├── 16S_rRNA_database_Alphaproteobacteria-AF395034.seq │ │ ├── 16S_rRNA_database_Alphaproteobacteria-AY500256.seq │ │ ├── 16S_rRNA_database_Alphaproteobacteria-D12791.seq │ │ ├── 16S_rRNA_database_Alphaproteobacteria-DQ303337.seq │ │ └── 16S_rRNA_database_Alphaproteobacteria-Z79620.seq │ ├── k5group4 │ │ ├── 16S_rRNA_database_Alphaproteobacteria-AB230988.seq │ │ ├── 16S_rRNA_database_Alphaproteobacteria-AF526933.seq │ │ ├── 16S_rRNA_database_Alphaproteobacteria-AY697886.seq │ │ ├── 16S_rRNA_database_Alphaproteobacteria-DQ196417.seq │ │ └── 16S_rRNA_database_Alphaproteobacteria-X75620.seq │ ├── k5group5 │ │ ├── 16S_rRNA_database_Alphaproteobacteria-AJ244647.seq │ │ ├── 16S_rRNA_database_Alphaproteobacteria-AY329631.seq │ │ ├── 16S_rRNA_database_Alphaproteobacteria-D25306.seq │ │ ├── 16S_rRNA_database_Alphaproteobacteria-DQ485704.seq │ │ └── 16S_rRNA_database_Alphaproteobacteria-DQ664249.seq │ ├── k5group6 │ │ ├── 16S_rRNA_database_Alphaproteobacteria-AB175645.seq │ │ ├── 16S_rRNA_database_Alphaproteobacteria-AJ563932.seq │ │ ├── 16S_rRNA_database_Alphaproteobacteria-DQ202331.seq │ │ ├── 16S_rRNA_database_Alphaproteobacteria-U12457.seq │ │ └── 16S_rRNA_database_Alphaproteobacteria-X67222.seq │ ├── k5group7 │ │ ├── 16S_rRNA_database_Alphaproteobacteria-AB110708.seq │ │ ├── 16S_rRNA_database_Alphaproteobacteria-AF411072.seq │ │ ├── 16S_rRNA_database_Alphaproteobacteria-AF485365.seq │ │ ├── 16S_rRNA_database_Alphaproteobacteria-AY689029.seq │ │ └── 16S_rRNA_database_Alphaproteobacteria-D16146.seq │ ├── k5group8 │ │ ├── 16S_rRNA_database_Alphaproteobacteria-AF510602.seq │ │ ├── 16S_rRNA_database_Alphaproteobacteria-AY468363.seq │ │ ├── 16S_rRNA_database_Alphaproteobacteria-AY649435.seq │ │ ├── 16S_rRNA_database_Alphaproteobacteria-DQ374100.seq │ │ └── 16S_rRNA_database_Alphaproteobacteria-L01259.seq │ └── k5group9 │ │ ├── 16S_rRNA_database_Alphaproteobacteria-AJ250247.seq │ │ ├── 16S_rRNA_database_Alphaproteobacteria-AY491080.seq │ │ ├── 16S_rRNA_database_Alphaproteobacteria-AY904749.seq │ │ ├── 16S_rRNA_database_Alphaproteobacteria-D12798.seq │ │ └── 16S_rRNA_database_Alphaproteobacteria-DQ664243.seq ├── 23S-5 │ ├── .DS_Store │ ├── k523sgroup0 │ │ ├── d.23.b.B.bacilliformis.nopbpseq.seq │ │ ├── d.23.b.R.prowazekii.nopbpseq.seq │ │ ├── d.23.b.R.rickettsii.nopbpseq.seq │ │ ├── d.23.c.P.falciparum.nopbpseq.seq │ │ └── d.23.e.G.intestinalis.nopbpseq.seq │ ├── k523sgroup1 │ │ ├── d.23.b.B.bronchiseptica.nopbpseq.seq │ │ ├── d.23.b.B.cepacia.nopbpseq.seq │ │ ├── d.23.b.B.mallei.nopbpseq.seq │ │ ├── d.23.b.B.pseudomallei.nopbpseq.seq │ │ └── d.23.b.R.amylophilus.nopbpseq.seq │ ├── k523sgroup2 │ │ ├── d.23.b.B.bacilliformis.nopbpseq.seq │ │ ├── d.23.b.B.mallei.nopbpseq.seq │ │ ├── d.23.b.C.jejuni.nopbpseq.seq │ │ ├── d.23.b.R.rickettsii.nopbpseq.seq │ │ └── d.23.y.C.paradoxa.nopbpseq.seq │ ├── k523sgroup4 │ │ ├── d.23.b.A.calcoaceticus.nopbpseq.seq │ │ ├── d.23.b.C.freundii.nopbpseq.seq │ │ ├── d.23.b.C.jejuni.nopbpseq.seq │ │ ├── d.23.b.E.coli.nopbpseq.seq │ │ └── d.23.b.K.pneumoniae.nopbpseq.seq │ └── k523sgroup6 │ │ ├── d.23.a.H.marismortui.1.nopbpseq.seq │ │ ├── d.23.b.B.anthracis.nopbpseq.seq │ │ ├── d.23.b.S.aureus.nopbpseq.seq │ │ ├── d.23.b.S.carnosus.nopbpseq.seq │ │ └── d.23.y.C.paradoxa.nopbpseq.seq ├── HIV-5 │ ├── .DS_Store │ ├── k5covid19group1 │ │ ├── hCoV-19__Australia__VIC5468__2020|EPI_ISL_520217|2020-07-22|Oceania.seq │ │ ├── hCoV-19__Sweden__20-14084__2020|EPI_ISL_450825|2020-04-27|Europe.seq │ │ ├── hCoV-19__USA__CA-CDC-4710__2020|EPI_ISL_535686|2020-06-04|NorthAmerica.seq │ │ ├── hCoV-19__USA__NM-DOH-2020327831__2020|EPI_ISL_575312|2020-09-03|NorthAmerica.seq │ │ └── hCoV-19__Wales__PHWC-16C6C3__2020|EPI_ISL_574084|2020-09-24|Europe.seq │ ├── k5covid19group2 │ │ ├── hCoV-19__Australia__VIC3220__2020|EPI_ISL_520905|2020-06-29|Oceania.seq │ │ ├── hCoV-19__Canada__ON_QGLO-038__2020|EPI_ISL_459889|2020-03-30|NorthAmerica.seq │ │ ├── hCoV-19__Luxembourg__LNS3770609__2020|EPI_ISL_421747|2020-03-17|Europe.seq │ │ ├── hCoV-19__Oman__16908__2020|EPI_ISL_491152|2020-04-12|Asia.seq │ │ └── hCoV-19__Wales__PHWC-491219__2020|EPI_ISL_706627|2020-11-14|Europe.seq │ ├── k5covid19group3 │ │ ├── hCoV-19__Australia__VIC6473__2020|EPI_ISL_521251|2020-07-23|Oceania.seq │ │ ├── hCoV-19__Sweden__20-08041__2020|EPI_ISL_475548|2020-03-08|Europe.seq │ │ ├── hCoV-19__Switzerland__BL-ETHZ-270214__2020|EPI_ISL_541460|2020-08-30|Europe.seq │ │ ├── hCoV-19__USA__WA-S2333__2020|EPI_ISL_496965|2020-06-11|NorthAmerica.seq │ │ └── hCoV-19__USA__WA-S692__2020|EPI_ISL_449862|2020-04-08|NorthAmerica.seq │ ├── k5covid19group4 │ │ ├── hCoV-19__England__MILK-B3C3AD__2020|EPI_ISL_706139|2020-11-01|Europe.seq │ │ ├── hCoV-19__England__QEUH-9BB01A__2020|EPI_ISL_572728|2020-09-07|Europe.seq │ │ ├── hCoV-19__England__QEUH-AAC673__2020|EPI_ISL_651476|2020-10-20|Europe.seq │ │ ├── hCoV-19__Sweden__20-05984__2020|EPI_ISL_475563|2020-03-18|Europe.seq │ │ └── hCoV-19__USA__CA-ALSR-0568-SAN__2020|EPI_ISL_483229|2020-05-13|NorthAmerica.seq │ └── k5covid19group5 │ │ ├── hCoV-19__Australia__VIC2630__2020|EPI_ISL_521476|2020-07-01|Oceania.seq │ │ ├── hCoV-19__Australia__VIC6603__2020|EPI_ISL_521365|2020-07-18|Oceania.seq │ │ ├── hCoV-19__USA__OR-PROV-079__2020|EPI_ISL_482352|2020-04-17|NorthAmerica.seq │ │ ├── hCoV-19__USA__WA-S1207__2020|EPI_ISL_463697|2020-05-07|NorthAmerica.seq │ │ └── hCoV-19__Wales__PHWC-169CC4__2020|EPI_ISL_529701|2020-08-18|Europe.seq ├── RNaseP-20 │ ├── .DS_Store │ ├── k5group35 │ │ ├── RNaseP_database_a_bacterial-C.trachomatis.seq │ │ ├── RNaseP_database_a_bacterial-M.tuberculosis.seq │ │ ├── RNaseP_database_a_bacterial-SM-A06.seq │ │ ├── RNaseP_database_a_bacterial-T.maritima-g.seq │ │ └── RNaseP_database_a_bacterial-V.spinosum.seq │ ├── k5group36 │ │ ├── RNaseP_database_a_bacterial-C.difficile.seq │ │ ├── RNaseP_database_a_bacterial-SM-A16(21).seq │ │ ├── RNaseP_database_a_bacterial-SM-A18(31).seq │ │ ├── RNaseP_database_a_bacterial-SM-A21(35).seq │ │ └── RNaseP_database_a_bacterial-Y.pestis.seq │ ├── k5group37 │ │ ├── RNaseP_database_a_bacterial-A.nidulans.seq │ │ ├── RNaseP_database_a_bacterial-Calothrix-PCC7601.seq │ │ ├── RNaseP_database_a_bacterial-LGB23.seq │ │ ├── RNaseP_database_a_bacterial-P.gingivalis.seq │ │ └── RNaseP_database_a_bacterial-P.marinus-2.seq │ ├── k5group38 │ │ ├── RNaseP_database_a_bacterial-A.eutrophus.seq │ │ ├── RNaseP_database_a_bacterial-A.ferrooxidans.seq │ │ ├── RNaseP_database_a_bacterial-B.burgdorferi-g.seq │ │ ├── RNaseP_database_a_bacterial-C.pneumoniae-AR39.seq │ │ └── RNaseP_database_a_bacterial-C.psittaci-R54.seq │ ├── k5group39 │ │ ├── RNaseP_database_a_bacterial-C.diphtheriae.seq │ │ ├── RNaseP_database_a_bacterial-D.desulfuricans.seq │ │ ├── RNaseP_database_a_bacterial-LGA6.seq │ │ ├── RNaseP_database_a_bacterial-S.cyanea-K168T.seq │ │ └── RNaseP_database_a_bacterial-S.glauca-K195.seq │ ├── k5group40 │ │ ├── RNaseP_database_a_bacterial-C.pecorum-E58.seq │ │ ├── RNaseP_database_a_bacterial-LGW18.seq │ │ ├── RNaseP_database_a_bacterial-PS27.seq │ │ ├── RNaseP_database_a_bacterial-S.marcescens.seq │ │ └── RNaseP_database_a_bacterial-S.viridis-K73T.seq │ ├── k5group41 │ │ ├── RNaseP_database_a_bacterial-CPA49.seq │ │ ├── RNaseP_database_a_bacterial-CPA56.seq │ │ ├── RNaseP_database_a_bacterial-Nostoc-PCC6705.seq │ │ ├── RNaseP_database_a_bacterial-PS26.seq │ │ └── RNaseP_database_a_bacterial-Wolbachia-sp.seq │ ├── k5group42 │ │ ├── RNaseP_database_a_bacterial-C.psittaci-2.seq │ │ ├── RNaseP_database_a_bacterial-LGW23.seq │ │ ├── RNaseP_database_a_bacterial-S.putrefaciens.seq │ │ ├── RNaseP_database_a_bacterial-SM-A17(26).seq │ │ └── RNaseP_database_a_bacterial-T.maritima.seq │ ├── k5group43 │ │ ├── RNaseP_database_a_bacterial-Anabaena-ATCC29413.seq │ │ ├── RNaseP_database_a_bacterial-C.pneumoniae.seq │ │ ├── RNaseP_database_a_bacterial-G.sulfurreducens.seq │ │ ├── RNaseP_database_a_bacterial-R.prowazekii.seq │ │ └── RNaseP_database_a_bacterial-V.cholera.seq │ ├── k5group44 │ │ ├── RNaseP_database_a_bacterial-Anabaena-PCC7120.seq │ │ ├── RNaseP_database_a_bacterial-C.trachomatis-2.seq │ │ ├── RNaseP_database_a_bacterial-N.meningitidis-Z2491.seq │ │ ├── RNaseP_database_a_bacterial-Synechococcus-PCC7001.seq │ │ └── RNaseP_database_a_bacterial-Synechocystis-PCC6803.seq │ ├── k5group45 │ │ ├── RNaseP_database_a_bacterial-C.felis-FP.seq │ │ ├── RNaseP_database_a_bacterial-LGA1.seq │ │ ├── RNaseP_database_a_bacterial-Nostoc-PCC7107.seq │ │ ├── RNaseP_database_a_bacterial-S.caesia-K182.seq │ │ └── RNaseP_database_a_bacterial-SM-A27(43).seq │ ├── k5group46 │ │ ├── RNaseP_database_a_bacterial-C.acetobutylicum.seq │ │ ├── RNaseP_database_a_bacterial-C.trachomatis-L1.seq │ │ ├── RNaseP_database_a_bacterial-CPA62.seq │ │ ├── RNaseP_database_a_bacterial-M.leprae.seq │ │ └── RNaseP_database_a_bacterial-Prochlorococcus-PAC1A.seq │ ├── k5group47 │ │ ├── RNaseP_database_a_bacterial-D.radiodurans-g.seq │ │ ├── RNaseP_database_a_bacterial-EM14b-11.seq │ │ ├── RNaseP_database_a_bacterial-R.capsulatus.seq │ │ ├── RNaseP_database_a_bacterial-R.rubrum.seq │ │ └── RNaseP_database_a_bacterial-T.thermophilus.seq │ ├── k5group48 │ │ ├── RNaseP_database_a_bacterial-Buchnera-APS.seq │ │ ├── RNaseP_database_a_bacterial-C.crescentus.seq │ │ ├── RNaseP_database_a_bacterial-C.hydrogenoformans.seq │ │ ├── RNaseP_database_a_bacterial-P.marinus.seq │ │ └── RNaseP_database_a_bacterial-S.caesia-K76T.seq │ ├── k5group49 │ │ ├── RNaseP_database_a_bacterial-B.thetaiotaomicron.seq │ │ ├── RNaseP_database_a_bacterial-EM14b-9.seq │ │ ├── RNaseP_database_a_bacterial-P.aeruginosa.seq │ │ ├── RNaseP_database_a_bacterial-S.typhi.seq │ │ └── RNaseP_database_a_bacterial-Saccharomonospora-K180.seq │ ├── k5group50 │ │ ├── RNaseP_database_a_bacterial-C.psittaci-6BC.seq │ │ ├── RNaseP_database_a_bacterial-H.influenza.seq │ │ ├── RNaseP_database_a_bacterial-M.bovis.seq │ │ ├── RNaseP_database_a_bacterial-PS31.seq │ │ └── RNaseP_database_a_bacterial-Rr368.seq │ ├── k5group51 │ │ ├── RNaseP_database_a_bacterial-D.vulgaris.seq │ │ ├── RNaseP_database_a_bacterial-E.coli-JM109.seq │ │ ├── RNaseP_database_a_bacterial-M.xanthus.seq │ │ ├── RNaseP_database_a_bacterial-Oscillatoria-PCC7515.seq │ │ └── RNaseP_database_a_bacterial-S.caesia-K163.seq │ ├── k5group52 │ │ ├── RNaseP_database_a_bacterial-A.ferrooxidans-g.seq │ │ ├── RNaseP_database_a_bacterial-CPB70.seq │ │ ├── RNaseP_database_a_bacterial-E.thermomarinus.seq │ │ ├── RNaseP_database_a_bacterial-PF101.seq │ │ └── RNaseP_database_a_bacterial-T.aquaticus.seq │ ├── k5group53 │ │ ├── RNaseP_database_a_bacterial-CPB144.seq │ │ ├── RNaseP_database_a_bacterial-Pseudoanabaena-PCC6903.seq │ │ ├── RNaseP_database_a_bacterial-SM-A34(56).seq │ │ ├── RNaseP_database_a_bacterial-X.fastidiosa.seq │ │ └── RNaseP_database_a_bacterial-vHge3-5.seq │ └── k5group54 │ │ ├── RNaseP_database_a_bacterial-C.tepidum.seq │ │ ├── RNaseP_database_a_bacterial-LGW17.seq │ │ ├── RNaseP_database_a_bacterial-M.tuberculosis-g.seq │ │ ├── RNaseP_database_a_bacterial-Nostoc-PCC7413.seq │ │ └── RNaseP_database_a_bacterial-Prochlorococcus-NATL1.seq ├── SRP-10 │ ├── .DS_Store │ ├── k5group25 │ │ ├── SRP_database_protozoan-Babe.bige._GSP-5866.seq │ │ ├── SRP_database_protozoan-Enta.hist._AF487684.seq │ │ ├── SRP_database_protozoan-Leis.infa._AM502223.seq │ │ ├── SRP_database_protozoan-Tetr.ther._X56981.seq │ │ └── SRP_database_protozoan-Tryp.bruc._AF047723.seq │ ├── k5group26 │ │ ├── SRP_database_protozoan-Cryp.homi._GSP-353151.seq │ │ ├── SRP_database_protozoan-Enta.inva._GSP-370355.seq │ │ ├── SRP_database_protozoan-Oxyt.trif._GSP-99928.seq │ │ ├── SRP_database_protozoan-Phyt.ramo._GSP-164328.seq │ │ └── SRP_database_protozoan-Tetr.rost._SDB-5909.seq │ ├── k5group27 │ │ ├── SRP_database_protozoan-Dict.disc._BJ387276.seq │ │ ├── SRP_database_protozoan-Leis.infa._SDB-5671.seq │ │ ├── SRP_database_protozoan-Lept.coll._AF006750.seq │ │ ├── SRP_database_protozoan-Plas.falc._AE014819.seq │ │ └── SRP_database_protozoan-Tryp.bruc._X57047.seq │ ├── k5group28 │ │ ├── SRP_database_protozoan-Cryp.parv._AA532232.seq │ │ ├── SRP_database_protozoan-Eime.tene._CD666347.seq │ │ ├── SRP_database_protozoan-Leis.braz._SDB-87235.seq │ │ ├── SRP_database_protozoan-Plas.falc._AU088164.seq │ │ └── SRP_database_protozoan-Thei.annu._NW_001091934.seq │ ├── k5group29 │ │ ├── SRP_database_protozoan-Cryp.parv._XM_626716.seq │ │ ├── SRP_database_protozoan-Dict.disc._AJ699381.seq │ │ ├── SRP_database_protozoan-Perk.mari._GSP-31276.seq │ │ ├── SRP_database_protozoan-Phyt.soja._GSP-67593.seq │ │ └── SRP_database_protozoan-Tryp.viva._SDB-5699.seq │ ├── k5group30 │ │ ├── SRP_database_protozoan-Dict.disc._BJ360333.seq │ │ ├── SRP_database_protozoan-Enta.disp._GSP-370354.seq │ │ ├── SRP_database_protozoan-Leis.braz._AM494942.seq │ │ ├── SRP_database_protozoan-Plas.gall._GSP-5849.seq │ │ └── SRP_database_protozoan-Toxo.gond._GSP-398031.seq │ ├── k5group31 │ │ ├── SRP_database_protozoan-Eime.tene._GSP-413949.seq │ │ ├── SRP_database_protozoan-Enta.mosh._GSP-41668.seq │ │ ├── SRP_database_protozoan-Enta.terr._GSP-110771.seq │ │ ├── SRP_database_protozoan-Leis.majo._SDB-347515.seq │ │ └── SRP_database_protozoan-Plas.viva._GSP-31273.seq │ ├── k5group32 │ │ ├── SRP_database_protozoan-Enta.hist._BK005670.seq │ │ ├── SRP_database_protozoan-Plas.know._GSP-5851.seq │ │ ├── SRP_database_protozoan-Tric.vagi._GSP-5722-1.seq │ │ ├── SRP_database_protozoan-Tric.vagi._GSP-5722-2.seq │ │ └── SRP_database_protozoan-Tryp.bruc._M80262.seq │ ├── k5group33 │ │ ├── SRP_database_protozoan-Plas.berg._DC223490.seq │ │ ├── SRP_database_protozoan-Plas.falc._EF690554.seq │ │ ├── SRP_database_protozoan-Plas.reic._GSP-5854.seq │ │ ├── SRP_database_protozoan-Plas.yoel._GSP-352914.seq │ │ └── SRP_database_protozoan-Tryp.bruc._S56681.seq │ └── k5group34 │ │ ├── SRP_database_protozoan-Ento.sulc._AF095839.seq │ │ ├── SRP_database_protozoan-Phyt.infe._CV919934.seq │ │ ├── SRP_database_protozoan-Plas.berg._DC223613.seq │ │ ├── SRP_database_protozoan-Plas.chab._GSP-31271.seq │ │ └── SRP_database_protozoan-Thei.parv._GSP-333668.seq ├── sars-cov-2_data │ └── samples25.fasta └── telomerase-5 │ ├── .DS_Store │ ├── k5group55 │ ├── telomerase_database-AF221912.98-564.seq │ ├── telomerase_database-AF221915.120-667.seq │ ├── telomerase_database-AF221926.103-507.seq │ ├── telomerase_database-AF221927.113-556.seq │ └── telomerase_database-AF221939.99-544.seq │ ├── k5group56 │ ├── telomerase_database-AF221906.96-545.seq │ ├── telomerase_database-AF221917.99-542.seq │ ├── telomerase_database-AF221918.97-547.seq │ ├── telomerase_database-AF221933.121-679.seq │ └── telomerase_database-AF221935.112-602.seq │ ├── k5group57 │ ├── telomerase_database-AF221910.112-554.seq │ ├── telomerase_database-AF221913.109-520.seq │ ├── telomerase_database-AF221924.105-538.seq │ ├── telomerase_database-AF221929.92-517.seq │ └── telomerase_database-U85256.1-451.seq │ ├── k5group58 │ ├── telomerase_database-AF221911.104-513.seq │ ├── telomerase_database-AF221914.112-589.seq │ ├── telomerase_database-AF221920.99-541.seq │ ├── telomerase_database-AF221921.98-548.seq │ └── telomerase_database-AF221931.99-541.seq │ └── k5group59 │ ├── telomerase_database-AF147806.247-692.seq │ ├── telomerase_database-AF221919.107-614.seq │ ├── telomerase_database-AF221934.121-565.seq │ ├── telomerase_database-AF221937.99-545.seq │ └── telomerase_database-AY312571.605-1069.seq ├── gflags.py ├── input.fasta ├── linearturbofold ├── sars-cov-2_results └── sars-cov-2_and_sars-related_25_genomes_msa_structures.txt └── src ├── Alignment.cpp ├── Alignment.h ├── ConfigParser.cpp ├── ConfigParser.h ├── LinearAlignment └── src │ ├── LinearAlign.cpp │ └── LinearAlign.h ├── LinearPartition ├── .gitattributes ├── AUTHORS ├── LICENSE ├── Makefile ├── README.md ├── gflags.py ├── src │ ├── LinearPartition.cpp │ ├── LinearPartition.h │ ├── Utils │ │ ├── energy_parameter.h │ │ ├── feature_weight.h │ │ ├── intl11.h │ │ ├── intl21.h │ │ ├── intl22.h │ │ ├── utility.h │ │ └── utility_v.h │ └── bpp.h └── testseq ├── LinearTurboFold.cpp ├── LinearTurboFold.h ├── ProbabilisticModel.cpp ├── ProbabilisticModel.h ├── SeqFold.cpp ├── SeqFold.h ├── data_tables ├── autodetect.txt ├── average_ensemble_defect.model ├── b-test.coaxial.dg ├── b-test.coaxial.dh ├── b-test.coaxstack.dg ├── b-test.coaxstack.dh ├── b-test.dangle.dg ├── b-test.dangle.dh ├── b-test.dynalignmiscloop.dg ├── b-test.hexaloop.dg ├── b-test.hexaloop.dh ├── b-test.int11.dg ├── b-test.int11.dh ├── b-test.int21.dg ├── b-test.int21.dh ├── b-test.int22.dg ├── b-test.int22.dh ├── b-test.loop.dg ├── b-test.miscloop.dg ├── b-test.specification.dat ├── b-test.stack.dg ├── b-test.stack.dh ├── b-test.tloop.dg ├── b-test.tloop.dh ├── b-test.triloop.dg ├── b-test.triloop.dh ├── b-test.tstack.dg ├── b-test.tstack.dh ├── b-test.tstackcoax.dg ├── b-test.tstackcoax.dh ├── b-test.tstackh.dg ├── b-test.tstackh.dh ├── b-test.tstacki.dg ├── b-test.tstacki.dh ├── b-test.tstacki1n.dg ├── b-test.tstacki1n.dh ├── b-test.tstacki23.dg ├── b-test.tstacki23.dh ├── b-test.tstackm.dg ├── b-test.tstackm.dh ├── coaxial.dat ├── coaxial.dh ├── coaxstack.dat ├── coaxstack.dh ├── dangle.dat ├── dangle.dh ├── data_assemble_training_Multifind_predict_ensemble_z_final_svmformat.model ├── description.txt ├── design.DNA.Helices.dat ├── design.DNA.Loops.dat ├── design.RNA.Helices.dat ├── design.RNA.Loops.dat ├── dists │ ├── CMCTdist.txt │ ├── DMSdist.txt │ ├── DMSdist_nt.txt │ └── SHAPEdist.txt ├── dna.coaxial.dg ├── dna.coaxial.dh ├── dna.coaxstack.dg ├── dna.coaxstack.dh ├── dna.dangle.dg ├── dna.dangle.dh ├── dna.dynalignmiscloop.dg ├── dna.dynalignmiscloop.dh ├── dna.hexaloop.dg ├── dna.hexaloop.dh ├── dna.int11.dg ├── dna.int11.dh ├── dna.int21.dg ├── dna.int21.dh ├── dna.int22.dg ├── dna.int22.dh ├── dna.loop.dg ├── dna.loop.dh ├── dna.miscloop.dg ├── dna.miscloop.dh ├── dna.specification.dat ├── dna.stack.dg ├── dna.stack.dh ├── dna.tloop.dg ├── dna.tloop.dh ├── dna.triloop.dg ├── dna.triloop.dh ├── dna.tstack.dg ├── dna.tstack.dh ├── dna.tstackcoax.dg ├── dna.tstackcoax.dh ├── dna.tstackh.dg ├── dna.tstackh.dh ├── dna.tstacki.dg ├── dna.tstacki.dh ├── dna.tstacki1n.dg ├── dna.tstacki1n.dh ├── dna.tstacki23.dg ├── dna.tstacki23.dh ├── dna.tstackm.dg ├── dna.tstackm.dh ├── dnacoaxial.dat ├── dnacoaxial.dh ├── dnacoaxstack.dat ├── dnacoaxstack.dh ├── dnadangle.dat ├── dnadangle.dh ├── dnadynalignmiscloop.dat ├── dnadynalignmiscloop.dh ├── dnahexaloop.dat ├── dnahexaloop.dh ├── dnaint11.dat ├── dnaint11.dh ├── dnaint21.dat ├── dnaint21.dh ├── dnaint22.dat ├── dnaint22.dh ├── dnaloop.dat ├── dnaloop.dh ├── dnamiscloop.dat ├── dnamiscloop.dh ├── dnastack.dat ├── dnastack.dh ├── dnatloop.dat ├── dnatloop.dh ├── dnatriloop.dat ├── dnatriloop.dh ├── dnatstack.dat ├── dnatstack.dh ├── dnatstackcoax.dat ├── dnatstackcoax.dh ├── dnatstackh.dat ├── dnatstackh.dh ├── dnatstacki.dat ├── dnatstacki.dh ├── dnatstacki1n.dat ├── dnatstacki1n.dh ├── dnatstacki23.dat ├── dnatstacki23.dh ├── dnatstackm.dat ├── dnatstackm.dh ├── dynalignmiscloop.dat ├── fam_hmm_pars.dat ├── helix.dat ├── helixdr.dat ├── hexaloop.dat ├── hexaloop.dh ├── int11.dat ├── int11.dh ├── int21.dat ├── int21.dh ├── int22-exp.dh ├── int22.dat ├── int22.dh ├── loop.dat ├── loop.dh ├── miscloop.dat ├── miscloop.dh ├── new_training_z_ave.scale.model ├── new_training_z_std.scale.model ├── pseudconst.dat ├── rna.coaxial.dg ├── rna.coaxial.dh ├── rna.coaxstack.dg ├── rna.coaxstack.dh ├── rna.cov.dg ├── rna.cov.dh ├── rna.dangle.dg ├── rna.dangle.dh ├── rna.dynalignmiscloop.dg ├── rna.hexaloop.dg ├── rna.hexaloop.dh ├── rna.int11.dg ├── rna.int11.dh ├── rna.int21.dg ├── rna.int21.dh ├── rna.int22.dg ├── rna.int22.dh ├── rna.loop.dg ├── rna.loop.dh ├── rna.miscloop.dg ├── rna.miscloop.dh ├── rna.param_map.dg ├── rna.specification.dat ├── rna.stack.dg ├── rna.stack.dh ├── rna.tloop.dg ├── rna.tloop.dh ├── rna.triloop.dg ├── rna.triloop.dh ├── rna.tstack.dg ├── rna.tstack.dh ├── rna.tstackcoax.dg ├── rna.tstackcoax.dh ├── rna.tstackh.dg ├── rna.tstackh.dh ├── rna.tstacki.dg ├── rna.tstacki.dh ├── rna.tstacki1n.dg ├── rna.tstacki1n.dh ├── rna.tstacki23.dg ├── rna.tstacki23.dh ├── rna.tstackm.dg ├── rna.tstackm.dh ├── rsample │ ├── paired_end.txt │ ├── paired_mid.txt │ └── unpaired.txt ├── stack.dat ├── stack.dh ├── stack.ds ├── stackdr.dat ├── stackdr.dh ├── stackdr.ds ├── std_ensemble_defect.model ├── tloop.dat ├── tloop.dh ├── triloop.dat ├── triloop.dh ├── tstack.dat ├── tstack.dh ├── tstackcoax.dat ├── tstackcoax.dh ├── tstackh.dat ├── tstackh.dh ├── tstacki.dat ├── tstacki.dh ├── tstacki1n.dat ├── tstacki1n.dh ├── tstacki23.dat ├── tstacki23.dh ├── tstackm.dat └── tstackm.dh ├── probknot.cpp ├── probknot.h └── utils ├── CTCommentProvider.h ├── DotBracketFormat.h ├── GuideTree.cpp ├── GuideTree.h ├── MultiSequence.cpp ├── MultiSequence.h ├── SafeVector.cpp ├── SafeVector.h ├── Sequence.cpp ├── Sequence.h ├── TProgressDialog.cpp ├── TProgressDialog.h ├── ansi_string.cpp ├── ansi_string.h ├── common_utils.cpp ├── common_utils.h ├── debug_logging.h ├── defines.h ├── log_double.h ├── math ├── log_lookup.h ├── matrix.cpp ├── matrix.h └── xlog_math.h ├── p_alignment.cpp ├── p_alignment.h ├── pfunction_math.h ├── phmm.cpp ├── phmm.h ├── phmm_aln.cpp ├── phmm_aln.h ├── phmm_array.cpp ├── phmm_array.h ├── platform.h ├── random.cpp ├── random.h ├── rna_library.cpp ├── rna_library.h ├── structure.cpp ├── structure.h ├── structure_object.cpp ├── structure_object.h ├── utils.cpp └── utils.h /.gitignore: -------------------------------------------------------------------------------- 1 | bin/* 2 | tmp_rets/* 3 | *.pyc 4 | .vscode/* 5 | 6 | # Prerequisites 7 | *.d 8 | 9 | # Compiled Object files 10 | *.slo 11 | *.lo 12 | *.o 13 | *.obj 14 | 15 | # Precompiled Headers 16 | *.gch 17 | *.pch 18 | 19 | # Compiled Dynamic libraries 20 | *.so 21 | *.dylib 22 | *.dll 23 | 24 | # Fortran module files 25 | *.mod 26 | *.smod 27 | 28 | # Compiled Static libraries 29 | *.lai 30 | *.la 31 | *.a 32 | *.lib 33 | 34 | # Executables 35 | *.exe 36 | *.out 37 | *.app 38 | -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- 1 | Disclaimer and Copyright 2 | 3 | The programs, library and source code of the LinearTurboFold Package are free 4 | software. They are distributed in the hope that they will be useful 5 | but WITHOUT ANY WARRANTY; without even the implied warranty of 6 | MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. 7 | 8 | Permission is granted for research, educational, and commercial use 9 | and modification so long as 1) the package and any derived works are not 10 | redistributed for any fee, other than media costs, 2) proper credit is 11 | given to the authors. 12 | 13 | corresponding authors: Liang Huang , 14 | David H. Mathews 15 | 16 | If you want to include this software in a commercial product, please contact 17 | the corresponding author. 18 | -------------------------------------------------------------------------------- /data/16S-25/.DS_Store: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/LinearFold/LinearTurboFold/445808976857df01c57e5d9302a0bbee10515bb5/data/16S-25/.DS_Store -------------------------------------------------------------------------------- /data/16S-25/k5group0/16S_rRNA_database_Alphaproteobacteria-AB117967.seq: -------------------------------------------------------------------------------- 1 | ; 2 | AB117967.seq 3 | CCACGAACCUUUCGGGGUUAGUGGCGGACGGGUGAGUAACGCGUAGGUAUCUAUCCAUGGGUGGGGGAUAACUCUGGGAAACUGGAGCUAAUACCGCAUGACACCUGAGGGUCAAAGGCGCGAGUCGCCUGUGGAGGAGCCUGCGUUCGAUUAGCUAGUUGGCGGGGUAAAGGCCCACCAAGGCGAUGAUCGAUAGCUGGUCUGAGAGGAUGAUCAGCCACACUGGGACUGAGACACGGCCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGGACAAUGGGCGCAAGCCUGAUCCAGCAAUGCCGCGUGUGUGAAGAAGGUCUUCGGAUUGUAAAGCACUUUCGACGGGGACGAUGAUGACGGUACCCGUAGAAGAAGCCCCGGCUAACUUCGUGCCAGCAGCCGCGGUAAUACGAAGGGGGCUAGCGUUGCUCGGAAUGACUGGGCGUAAAGGGCGCGUAGGCGGUAUGGACAGUCAGAUGUGAAAUUCCUGGGCUUAACCUGGGGGCUGCAUUUGAUACGUCCAAACUAGAGUGUGAGAGAGGGUUGUGGAAUUCCCAGUGUAGAGGUGAAAUUCGUAGAUAUUGGGAAGAACACCGGUGGCGAAGGCGGCAACCUGGCUCAUAACUGACGCUGAGGCGCGAAAGCGUGGGGAGCAAACAGGAUUAGAUACCCUGGUAGUCCACGCUGUAAACGAUGUGUGCUGGAUGUUGGGUGACUUAGUCAUUCAGUGUCGUAGGUUAACGCGAUAAGCACACCGCCUGGGGAGUACGGCCGCAAGGUUGAAACUCAAAGGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGAAGCAACGCGCAGAACCUUACCAGGGCUUGACAUGGGGAGGCUGUAUCCAGAGAUGGGUAUUUCCCGCAAGGGACCUCCUGCACAGGUGCUGCAUGGCUGUCGUCAGCUCGUGUCGUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCUCGCCUUUAGUUGCCAGCAUGAUUGGGUGGGCACUCUAAAGGAACUGCCGGUGACAAGCCGGAGGAAGGUGGGGAUGACGUCAAGUCCUCAUGGCCCUUAUGUCCUGGGCUACACACGUGCUACAAUGGCGGUGACAGUGGGAAGCCAGGCAGCGAUGCCGAGCUGAUCUCAAAAAGCCGUCUCAGUUCGGAUUGCACUCUGCAACUCGAGUGCAUGAAGGUGGAAUCGCUAGUAAUCGCGGAUCAGCAUGCCGCGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACACCAUGGGAGUUGGUUUGACCUUAAGCCGGUGAGCGAACCCGCAAGGGGCGCAGCCGACCACGGUCGGGUCAGCGACUGGGGUGAAGUCGUAACAAGGUAGCCGUAGGGGAACCUGCGGCUGGAUCACCUCCUUA1 4 | -------------------------------------------------------------------------------- /data/16S-25/k5group0/16S_rRNA_database_Alphaproteobacteria-D14432.seq: -------------------------------------------------------------------------------- 1 | ; 2 | D14432.seq 3 | GCUGGCGGCAGGCCUAACACAUGCAAGUCGAACGGGGACCUUCGGGUCUUACGUGGCGCACGGGUGAGUAACGCGUGGGAAUCUACCCUAAAGUCGGGGAUAACCGCUGGAAACGGCGGCUAAUACCGGAUACGCCCUGAGGGGCAAAGCUUUUGCGCUUUAGGAGGAGCCCGCGUCCGAUUAGCUAGUUGGUGGGGUAAAGGCCUACCAAGGCUGCGAUCGGUAGCUGGUCUGAGAGGAUGAUCAGCCACACUGGGACUGAGACACGGCCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUCUUGGACAAUGGGGGCAACCCUGAUCCAGCCAUGCCGCGUGGGUGAAGAAGGCCUUAGGGUUGUAAAGCCCUUUCGGCGGGGAAGAUGAUGACGGUACCCGCAGAAGAAGCCCCGGCUAACUCCGUGCCAGCAGCNNNGGUAAUACGGAGGGGGCNAGCGUUGUUCGGAAUCACUGGGCGUAAAGGGCGCGUAGGCGGACCAGCAAGUCAGGGGUGAAAGCCCUGGGCUCAACCUAGGAAGUGCCCUUGAAACUGCAGGUCUUGAGUCCGGGAGAGGAGAGCGGAAUUCCCAGUGUAGAGGUGAAAUUCGUAGAUAUUGGGAAGAACACCGGUGGCGAAGGCGGCUCUCUGGACCGGCACUGACGCUGAGGCGCGAAAGCGUGGGGAGCAAACAGGAUUAGAUACCCUGGUAGUCCACGCCGUAAACGAUGUGCGCUAGCCGUUGGGCAACCUAGUUGUUCAGUGGCGCAGCCAACGCAUUAAGCGCACCGCCUGGGGAGUACGGCCGCAAGGCUAAAACUCAAAGGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGAAGCAACGCGCAGAACCUUACCAGCCCUUGACAUGUCCGUCGCGCACGGGAGACCGAGGCUUUCAGUUCGGCUGGACGGAACACAGGUGCUGCAUGGCUGUCGUCAGCUCGUGUCGUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCCUGUCCUUAGUUGCUAUCGGUUCGGUUGAGCACUCUAGGGAGACUGCCGGUGAUAAGCCGGAGGAAGGCGGGGAUGACGUCAAGUCCUCAUGGCCCUUAUGGGCUGGGCUACACACGUGCUACAAUGGCGGCGACAGAGGGAAGCAAGCCCGCGAGGGUGCGCGAAUCUCCAAACGCCGUCUCAGUUCGGAUCGCAGUCUGCAACUCGACUGCGUGAAGCCGGAAUCGCUAGUAAUCGCGGAUCAGAAUGCCGCGGUGAAUACGUUCCCGGGCCUUGUACACACNGCCCGUCACACCAUGGGAGUUGGCUUUACCCGAAGCCGGUGCGCUAACCCGCAAGGGAGGCAGCCGACCACGGUAAGGUCAGCGACUGGGG1 4 | -------------------------------------------------------------------------------- /data/16S-25/k5group0/16S_rRNA_database_Alphaproteobacteria-D32229.seq: -------------------------------------------------------------------------------- 1 | ; 2 | D32229.seq 3 | AGCGAACGCUGUCGGCAGGCUUAUCACAUGUAAGUCGAGAGGGCACCUUCGGGUGUCAGCGGCAGACGGGUGAGUAACACGUGGGAACGUGCCCUUCGGUUCGGAAUAACUCAGGGAAACUUGAGCUAAUACCGGAUACGCCCUUAUGGGGAAAGGUUUACCGCCGAAGGAUCGGCCCGCGUCUGAUUAGCUUGUUGGUGGGGUAACGGCCUACCAAGGCGACGAUCAGUAGCUGGUCUGAGAGGAUCAUCAGCCACACUGGGACUGAGACACGGCCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGGACAAUGGGCGCAAGCCUGAUCCAGCCAUGCCGCGUGAGUGAUGAAGGCCUUAGGGUUGUAAAGCUCUUUUGUCCGGGACGAUAAUGACGGUACCGGAAGAAUAAGCCCCGGCUAACUUCGUGCCAGCAGCCGCGGUAAUACGAAGGGGGCUAGCGUUGCUCGGAAUCACUGGGCGUAAAGGGCGCGUAGGCGGCUUUUUAAGUCGGGGGUGAAAGCCUGUGGCUCAACCACAGAAUUGCCUUCGAUACUGGAAAGCUUGAGACCGGAAGAGGACAGCGGAACUGCGAGUGUAGAGGUGAAAUUCGUAGAUAUUCGCAAGAACACCAGUGGCGAAGGCGGCUGUCUGGUCCGGUUCUGACGCUGAGGCGCGAAAGCGUGGGGAGCAAACAGGAUUAGAUACCCUGGUAGUCCACGCCGUAAACGAUGAAUGCCAGCCGUUGGCCUGCUUGCAGGUCAGUGGCGCCGCUAACGCAUUAAGCAUUCCGCCUGGGGAGUACGGUCGCAAGAUUAAAACUCAAAGGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGAAGCAACGCGCAGAACCUUACCAUCCCUUGACAUGGCGUGUUACCCAGGGAGACUUGGGAUCCUCUUCGGAGGCGCGCACACAGGUGCUGCAUGGCUGUCGUCAGCUCGUGUCGUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCACGUCCUUAGUUGCCAUCAUUCAGUUGGGCACUCUAGGGAGACUGCCGGUGAUAAGCCGCGAGGAAGGUGUGGAUGACGUCAAGUCCUCAUGGGCCUUACGGGAUGGGCUACACACGUGCUACAAUGGCGGUGACAGUGGGACGCGAAGGAGCGAUCUGGAGCAAAUCCCCAAAAGCCGUCUCAGUUCGGAUUGCACUCUGCAACUCGGGUGCAUGAAGGCGGAAUCGCUAGUAAUCGUGGAUCAGCAUGCCACGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACACCAUGGGAGUUGGUCUUACCCGACGGCGCUGCGCCAACCGCAAGGAGGCAGGCGACCACGGUAGGGUCAGCGACUGGGGUG1 4 | -------------------------------------------------------------------------------- /data/16S-25/k5group1/16S_rRNA_database_Alphaproteobacteria-AY972871.seq: -------------------------------------------------------------------------------- 1 | ; 2 | AY972871.seq 3 | GAGUUUGAUCAUGGCUCAGAGCGAACGCUGGCGGCAGGCCUAACACAUGCAAGUCGAACGAACUCUUCGGAGUUAGUGGCGGACGGGUGAGUAACACGUGGGAACGUGCCUUUUGGUUCGGAAUAACUCAGGGAAACUUGUGCUAAUACCGGAUGUGCCCUUCGGGGGAAAGAUUUAUCGCCAUUAGAGCGGCCCGCGUCUGAUUAGCUAGUUGGUGAGGUAACGGCUCACCAAGGCGACGAUCAGUAGCUGGUCUGAGAGGAUGAUCAGCCACACUGGGACUGAGACACGGCCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUCUUGCGCAAUGGGCGAAAGCCUGACGCAGCCAUGCCGCGUGAAUGAUGAAGGUCUUAGGAUUGUAAAAUUCUUUCACCGGGGACGAUAAUGACGGUACCCGGAGAAGAAGCCCCGGCUAACUUCGUGCCAGCAGCCGCGGUAAUACGAAGGGGGCUAGCGUUGCUCGGAAUUACUGGGCGUAAAGGGCGCGUAGGCGGAUCGUUAAGUCAGGGGUGAAAUCCCGGGGCUCAACCUCGGAAUUGCCCUUGAUACUGGCGAUCUUGAGUAUGAGAGAGGUAUGUGGAACUCCGAGUGUAGAGGUGAAAUUCGUAGAUAUUCGGAAGAACACCAGUGGCGAAGGCGACAUACUGGCUCAUUACUGACGCUGAGGCGCGAAAGCGUGGGGAGCAAACAGGAUUAGAUACCCUGGUAGUCCACGCCGUAAACGAUGAUUGCUAGUUGUCGGGCUGCAUGCAGUUCGGUGACGCAGCUAACGCAUUAAGCAAUCCGCCUGGGGAGUACGGUCGCAAGAUUAAAACUCAAAGGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGAAGCAACGCGCAGAACCUUACCACCUUUUGACAUGCCUGGACCGCCACGGAGACGUGGCUUUCCCUUCGGGGACUAGGACACAGGUGCUGCAUGGCUGUCGUCAGCUCGUGUCGUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCUCGCCAUUAGUUGCCAUCAUUUAGUUGGGAACUCUAAUGGGACUGCCGGUGCUAAGCCGGAGGAAGGUGGGGAUGACGUCAAGUCCUCAUGGCCCUUACAGGGUGGGCUACACACGUGCUACAAUGGCGACUACAGAGGGUUAAUCCUUAAAAGUCGUCUCAGUUCGGAUUGUCCUCUGCAACUCGAGGGCAUGAAGUUGGAAUCGCUAGUAAUCGCGGAUCAGCAUGCCGCGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACACCAUGGGAGUUGGUUCUACCCGAAGGCGAUGCGCUAACCGCAAGGAGGCAGUCCGACCACGGUAGGGUCAGCGACUGGGGUGAAGUCGUAACAAGGUAACC1 4 | -------------------------------------------------------------------------------- /data/16S-25/k5group1/16S_rRNA_database_Alphaproteobacteria-DQ341416.seq: -------------------------------------------------------------------------------- 1 | ; 2 | DQ341416.seq 3 | CGAUGGGUAACCCGCUAUGAAUGCAUGUCGAACGAACUCUGUGCGAGACUUAAAUGGCGGACGGGUGAGUAACACGUGGGAACGUGCCUUUAGGUUCGGAAUAACUCAGGGAAACUUGUGCUAAUACCGAAUGUGCCCUUCGGGGGAAAGAUUUAUCGCCUUUAGAGCGGCCCGCGUCUGAUUAGCUAGUUGGUGAGGUAAAGGCUCACCAAGGCGACGAUCAGUAGCUGGUCUGAGAGGAUGAUCAGCCACAUUGGGACUGAGACACGGCCCAAACUCCUACGGGAGGCAGCAGUGGGGAAUCUUGCGCAAUGGGCGAAAGCCUGACGCAGCCAUGCCGCGUGAAUGAUGAAGGUCUUAGGAUUGUAAAAUUCUUUCACCGGGGACGAUAAUGACGGUACCCGGAGAAGAAGCCCCGGCUAACUUCGUGCCAGCAGCCGCGGUAAUACGAAGGGGGCUAGCGUUGCUCGGAAUUACUGGGCGUAAAGGGAGCGUAGGCGGACAUUUAAGUCAGGGGUGAAAUCCCGGGGCUCAACCUCGGAAUUGCCUUUGAUACUGGGUGUCUUGAGUAUGAGAGAGGUGUGUGGAACUCCGAGUGUAGAGGUGAAAUUCGUAGAUAUUCGGAAGAACACCAGUGGCGAAGGCGACACACUGGCUCAUUACUGACGCUGAGGCUCGAAAGCGUGGGGAGCAAACAGGAUUAGAUACCCUGGUAGUCCACGCCGUAAACGAUGAUUGCUAGUUGUCGGGAUGCAUGCAUUUCGGUGACGCAGCUAACGCAUUAAGCAAUCCGCCUGGGGAGUACGGUCGCAAGAUUAAAACUCAAAGGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGAAGCAACGCGCAGAACCUUACCACCUUUUGACAUGCCUGGACCGCCACGGAGACGUGGCUUUCCCUUCGGGGACUAGGACACAGGUGCUGCAUGGCUGUCGUCAGCUCGUGUCGUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCUCGCCAUUAGUUGCCAUCAUUUAGUUGGGAACUCUAAUGGGACUGCCGGUGCUAAGCCGGAGGAAGGUGGGGGAUGACGUCAAGUCCUCAUGGCCCUUACAGGGUGGGCUACACACGUGCUACAAUGGCGACUACAGAGGGUUAAUCCUUAAAAGUCGUCUCAGUUCGGAUUGUCCUCUGCAACUCGAGGGCAUGAAGUUGGAAUCGCUAGUAAUCGCGGAUCAGCAUGCCGCGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACACCAUGGGAGUUGGUUCUACCCGAAGGCGCUGCGCUGACCGCAAGGAGGCAGGCGACCACGGUAGGGUCAGCGACUGGGGUGAAGUCGUAACAAGGUAACCGUAA1 4 | -------------------------------------------------------------------------------- /data/16S-25/k5group10/16S_rRNA_database_Alphaproteobacteria-AY468370.seq: -------------------------------------------------------------------------------- 1 | ; 2 | AY468370.seq 3 | AGAGUUUGAUCAUGGCUCAGAGCGAACGCUGGCGGCAGGCUUAACACAUGCAAGUCGAACGGGCUUCUUCGGAAGUCAGUGGCAGACGGGUGAGUAACACGUGGGAACGUGCCCUUCGGUUCGGAAUAACUCAGGGAAACUUGAGCUAAUACCGGAUACGCCCUUACGGGGAAAGGUUUACUGCCGAAGGAUCGGCCCGCGUCUGAUUAGCUUGUUGGUGGGGUAACGGCCUACCAAGGCGACGAUCAGUAGCUGGUCUGAGAGGAUGAUCAGCCACACUGGGACUGAGACACGGCCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGGACAAUGGGCGCAAGCCUGAUCCAGCCAUGCCGCGUGAGUGAUGAAGGCCUUAGGGUUGUAAAGCUCUUUUGUCCGGGACGAUAAUGACGGUACCGGAAGAAUAAGCCCCGGCUAACUUCGUGCCAGCAGCCGCGGUAAUACGAAGGGGGCUAGCGUUGCUCGGAAUCACUGGGCGUAAAGGGCGCGUAGGCGGCCGAUUAAGUCGGGGGUGAAAGCCUGUGGCUCAACCACAGAAUUGCCUUCGAUACUGGUUGGCUUGAGACCGGAAGAGGACAGCGGAACUGCGAGUGUAGAGGUGAAAUUCGUAGAUAUUCGCAAGAACACCAGUGGCGAAGGCGGCUGUCUGGUCCGGUUCUGACGCUGAGGCGCGAAAGCGUGGGGAGCAAACAGGAUUAGAUACCCUGGUAGUCCACGCCGUAAACGAUGAAUGCCAGCCGUUGGCCUGCUUGCAGGUCAGUGGCGCCGCUAACGCAUUAAGCAUUCCGCCUGGGGAGUACGGUCGCAAGAUUAAAACUCAAAGGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGAAGCAACGCGCAGAACCUUACCAUCCCUUGACAUGGCAUGUUACCCCGAGAGAUCGGGGAUCCUCUUCGGAGGCGUGCACACAGGUGCUGCAUGGCUGUCGUCAGCUCGUGUCGUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCACGUCCUUAGUUGCCAUCAUUCAGUUGGGCACUCUAGGGAGACUGCCGGUGAUAAGCCGCGAGGAAGGUGUGGAUGACGUCAAGUCCUCAUGGCCCUUACGGGAUGGGCUACACACGUGCUACAAUGGCGGUGACAGUGGGACGCGAAACCGCGAGGUUGAGCGAAUCCCCAAAAGCCGUCUCAGUUCGGAUUGCACUCUGCAACUCGGGUGCAUGAAGGCGGAAUCGCUAGUAAUCGUGGAUCAGCACGCCACGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACACCAUGGGAGUUGGUCUUACCCGACGGCGCUGCGCCAACCGCAAGGGGGCAGGCGACCACGGUAGGGUCAGCGACUGGGGUG1 4 | -------------------------------------------------------------------------------- /data/16S-25/k5group11/16S_rRNA_database_Alphaproteobacteria-X94201.seq: -------------------------------------------------------------------------------- 1 | ; 2 | X94201.seq 3 | GCUGGCGGCAGGCCUAACACAUGCAAGUCGAGCGCCCAGCAAUGGGAGCGGCAGACGGGUGAGUAACACGUGGGGAUCUACCCAAUGGUACGGAAUAACCCAGGGAAACUUGGACUAAUACCGUAUGUGCCCUUCGGGGGAAAGAUUUAUCGCCAUUGGAUGAACCCGCGUCGGAUUAGCUAGUUGGUGAGGUAAAGGCUCACCAAGGCGACGAUCCGUAGCUGGUCUGAGAGGAUGAUCAGCCACACUGGGACUGAGACACGGCCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGGACAAUGGGCGCAAGCCUGAUCCAGCCAUGCCGCGUGUGUGAUGAAGGCCUUAGGGUUGUAAAGCACUUUCGCCGGUGAAGAUAAUGACGGUAACCGGAGAAGAAGCCCCGGCUAACUUCGUGCCAGCAGCCGCGGUAAUACGAAGGGGGCAAGCGUUGCUCGGAAUCACUGGGCGUAAAGCGCACGUAGGCGGGUUGUUAAGUCAGAGGUGAAAUCCUGGAGCUCAACUCCAGAACUGCCUUUGAUACUGGCGACCUUGAGUUCGAGAGAGGUUGGUGGAACUGCGAGUGUAGAGGUGAAAUUCGUAGAUAUUCGCAAGAACACCAGUGGCGAAGGCGGCCAACUGGCUCGAUACUGACGCUGAGGUGCGAAAGCGUGGGGAGCAAACAGGAUUAGAUACCCUGGUAGUCCACGCCGUAAACGAUGGAUGCUAGCCGUUAGGCAGCUUGCUGCUUAGUGGCGCAGCUAACGCAUUAAGCAUCCCGCCUGGGGAGUACGGUCGCAAGAUUAAAACUCAAAGGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGAAGCAACGCGCAGAACCUUACCAGCCUUUGACAUGGCAGGACGAUUUCCAGAGAUGGAUCUCUUCCAGCAAUGGACCUGCACACAGGUGCUGCAUGGCUGUCGUCAGCUCGUGUCGUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCUCGCCUCUAGUUGCCAGCAUUCAGUUGGGCACUCUAGAGGGACUGCCGGUGAUAAGCCGCGAGGAAGGUGGGGAUGACGUCAAGUCCUCAUGGCCCUUACGGGCUGGGCUACACACGUGCUACAAUGGCGGUGACAGUGGGAUGCAAAGGGGCGACCCCUAGCAAAUCUCCAAAAGCCGUCUCAGUUCGGAUUGCACUCUGCAACUCGAGUGCAUGAAGUUGGAAUCGCUAGUAAUCGUGGAUCAGCAUGCCACGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACACCAUGGGAGUUGGCUUUACCCGAAGGCGCUGCGCUAACCCGCAAGGGAGGCAGGCGACCACGGUAGGGUCAGCGACUGGGGUGAAGUCGUAACAA1 4 | -------------------------------------------------------------------------------- /data/16S-25/k5group14/16S_rRNA_database_Alphaproteobacteria-AB175632.seq: -------------------------------------------------------------------------------- 1 | ; 2 | AB175632.seq 3 | CGAACGCUGGCGGCAGGCUUAACACAUGCAAGUCGAACGGGCACCUUCGGGUGUCAGUGGCAGACGGGUGAGUAACACGUGGGAACGUACCCUUCGGUUCGGAAUAACUCAGGGAAACUUGAGCUAAUACCGGAUACGCCCUUUUGGGGAAAGGUUUACUGCCGAAGGAUCGGCCCGCGUCUGAUUAGCUUGUUGGUGGGGUAACGGCCUACCAAGGCGACGAUCAGUAGCUGGUCUGAGAGGAUGAUCAGCCACACUGGGACUGAGACACGGCCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGGACAAUGGGCGCAAGCCUGAUCCAGCCAUGCCGCGUGAGUGAUGAAGGCCUUAGGGUUGUAAAGCUCUUUUGUCCGGGACGAUAAUGACGGUACCGGAAGAAUAAGCCCCGGCUAACUUCGUGCCAGCAGCCGCGGUAAUACGAAGGGGGCUAGCGUUGCUCGGAAUCACUGGGCGUAAAGGGCGCGUAGGCGGCCGAUUAAGUCGGGGGUGAAAGCCUGUGGCUCAACCACAGAAUUGCCUUCGAUACUGGUUGGCUUGAGACCGGAAGAGGACAGCGGAACUGCGAGUGUAGAGGUGAAAUUCGUAGAUAUUCGCAAGAACACCAGUGGCGAAGGCGGCUGUCUGGUCCGGUUCUGACGCUGAGGCGCGAAAGCGUGGGGAGCAAACAGGAUUAGAUACCCUGGUAGUCCACGCCGUAAACGAUGAAUGCCAGCCGUUGGCCUGCUUGCAGGUCAGUGGCGCCGCUAACGCAUUAAGCAUUCCGCCUGGGGAGUACGGUCGCAAGAUUAAAACUCAAAGGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGAAGCAACGCGCAGAACCUUACCAUCCCUUGACAUGGCAUGUUACCUCGAGAGAUCGGGGAUCCUCUUCGGAGGCGUGCACACAGGUGCUGCAUGGCUGUCGUCAGCUCGUGUCGUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCACGUCCUUAGUUGCCAUCAUUCAGUUGGGCACUCUAGGGAGACUGCCGGUGAUAAGCCGCGAGGAAGGUGUGGAUGACGUCAAGUCCUCAUGGCCCUUACGGGAUGGGCUACACACGUGCUACAAUGGCGGUGACAGUGGGACGCGAAGCCGCGAGGUGGAGCAAAUCCCCAAAAACCGUCUCAGUUCGGAUUGCACUCUGCAACUCGGGUGCAUGAAGGCGGAAUCGCUAGUAAUCGUGGAUCAGCACGCCACGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACACCAUGGGAGUUGGUCUUACCCGACGGCGCUGCGCCAACCGCAAGGAGGCAGGCGACCACGGUAGGGUCAGCGACUGGGGUG1 4 | -------------------------------------------------------------------------------- /data/16S-25/k5group15/16S_rRNA_database_Alphaproteobacteria-AB178392.seq: -------------------------------------------------------------------------------- 1 | ; 2 | AB178392.seq 3 | AGCGAACGCUGGCGGCAUGCUUAACACAUGCAAGUCGCACGAAGGUUUCGGCCUUAGUGGCGGACGGGUGAGUAACGCGUAGGGAUCUAUCCACGGGUGGGGGACAACUUCGGGAAACUGGAGCUAAUACCGCAUGAUACCUGAGGGUCAAAGGCGCAAGUCGCCUGUGGAGGAACCUGCGUUCGAUUAGCUAGUUGGUGGGGUAAAGGCCUACCAAGGCGAUGAUCGAUAGCUGGUUUGAGAGGAUGAUCAGCCACACUGGGACUGAGACACGGCCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGGACAAUGGGGGAAACCCUGAUCCAGCAAUGCCGCGUGUGUGAAGAAGGUCUUCGGAUUGUAAAGCACUUUCGACGGGGACGAUGAUGACGGUACCCGUAGAAGAAGCCCCGGCUAACUUCGUGCCAGCAGCCGCGGUAAUACGAAGGGGGCUAGCGUUGCUCGGAAUGACUGGGCGUAAAGGGCGCGUAGGCGGUUUGGACAGUCAGAUGUGAAAUCCCCGGGCUUAACCUGGGAACUGCAUUUGAUACGUCCAGACUAGAGUUCGAGAGAGGGUUGUGGAAUUCCCAGUGUAGAGGUGAAAUUCGUAGAUAUUGGGAAGAACACCGGUGGCGAAGGCGGCAACCUGGCUCGAUACUGACGCUGAGGCGCGAAAGCGUGGGGAGCAAACAGGAUUAGAUACCCUGGUAGUCCACGCUGUAAACGAUGUGUGCUGGAUGUUGGGUAACUUAGUUACUCAGUGUCGAAGCUAACGCGCUAAGCACACCGCCUGGGGAGUACGGCCGCAAGGUUGAAACUCAAAGGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGAAGCAACGCGCAGAACCUUACCAGGGCUUGCAUGGGGAGGACCGGUUCAGAGAUGGACCUUUCUUCGGACCUCCCGCACAGGUGCUGCAUGGCUGUCGUCAGCUCGUGUCGUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCUUGUCUUUAGUUGCCAGCACUUUCAGGUGGGCACUCUAGAGAGACUGCCGGUGACAAGCCGGAGGAAGGUGGGGAUGACGUCAAGUCCUCAUGGCCCUUAUGUCCUGGGCUACACACGUGCUACAAUGGCGGUGACAGUGGGAAGCUACAUGGUGACAUGGUGCUGAUCUCUAAAAGCCGUCUCAGUUCGGAUUGUACUCUGCAACUCGAGUACAUGAAGGUGGAAUCGCUAGUAAUCGCGGAUCAGCAUGCCGCGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACACCAUGGGAGUUGGUUCGACCUUAAGCCGGUGAGCGAACCGCAAGGACGCAGCCGACCACGGACGGGUCAGCGACUGGGGUGAAG1 4 | -------------------------------------------------------------------------------- /data/16S-25/k5group15/16S_rRNA_database_Alphaproteobacteria-AY785315.seq: -------------------------------------------------------------------------------- 1 | ; 2 | AY785315.seq 3 | CGCUGGCGGCAGGCUUAACACAUGCAAGUCGAGCGCCCCGCAAGGGGAGCGGCAGACGGGUGAGUAACGCGUGGGAAUCUACCCAUCUCUACGGAAUAACGCAUGGAAACGUGUGCUAAUACCGUAUACGUCCUUCGGGAGAAAGAUUUAUCGGAGAUGGAUGAGCCCGCGUUGGAUUAGCUAGUUGGUGGGGUAAAGGCCUACCAAGGCGACGAUCCAUAGCUGGUCUGAGAGGAUGAUCAGCCACACUGGGACUGAGACACGGCCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGGACAAUGGGCGCAAGCCUGAUCCAGCCAUGCCGCGUGAGUGAUGAAGGCCCUAGGGUUGUAAAGCUCUUUCACCGGUGAAGAUAAUGACGGUAACCGGAGAAGAAGCCCCGGCUAACUUCGUGCCAGCAGCCGCGGUAAUACGAAGGGGGCUAGCGUUGUUCGGAUUUACUGGGCGUAAAGCGCACGUAGGCGGACUAUUAAGUCAGGGGUGAAAUCCCGGGGCUCAACCCCGGAACUGCCUUUGAUACUGGUAGUCUUGAGUUCGAGAGAGGUGAGUGGAAUUCCGAGUGUAGAGGUGAAAUUCGUAGAUAUUCGGAGGAACACCAGUGGCGAAGGCGGCUCACUGGCUCGAUACUGACGCUGAGGUGCGAAAGCGUGGGGAGCAAACAGGAUUAGAUACCCUGGUAGUCCACGCCGUAAACUAUGAGAGCUAGCCGUCGGGCAGUAUACUGUUCGGUGGCGCAGCAAACGCAUUAAGCUCUCCGCCUGGGGAGUACGGUCGCAAGAUUAAAACUCAAAGGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGAAGCAACGCGCAGAACCUUACCAGCCCUUGACAUCCCGAUCGCGGUUACCAGAGAUGGUUUCCUUCAGUUAGGCUGGAUCGGUGACAGGUGCUGCAUGGCUGUCGUCAGCUCGUGUCGUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCUCGCCCUUAGUUGCCAUCAUUCAGUUGGGCACUCUAAGGGGACUGCCGGUGAUAAGCCGAGAGGAAGGUGGGGAUGACGUCAAGUCCUCAUGGCCCUUACGGGCUGGGCUACACACGUGCUACAAUGGUGGUGACAGUGGGCAGCGAGACCGCGAGGUCGAGCUAAUCUCCAAAAGCCAUCUCAGUUCGGAUUGCACUCUGCAACUCGAGUGCAUGAAGUUGGAAUCGCUAGUAAUCGUGGAUCAGAAUGCCACGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACACCAUGGGAGUUGGUUUUACCCGAAGGUGCUGUGCUAACCGCAAGGAGGCAGGCAACCACGGUAGGGUCAGCGACUGGGGUG1 4 | -------------------------------------------------------------------------------- /data/16S-25/k5group16/16S_rRNA_database_Alphaproteobacteria-AB110710.seq: -------------------------------------------------------------------------------- 1 | ; 2 | AB110710.seq 3 | UCAGAGCGAACGCUGGCGGCAUGCUUAACACAUGCAAGUCGCACGAGGGUUUCGGCCCUAGUGGCGGACGGGUGAGUAGCGCGUAGGGAUCUAUCCAUGGGUGGGGGAUAACACUGGGAAACUGGUGCUAAUACCGCAUGAUGCCUGAGGGCCAAAGGCGCGAGUCGCCUGUGGAGGAGCCUGCGUUCGAUUAGCUUGUUGGUGGGGUAAAGGCCUACCAAGGCGAUGAUCGAUAGCUGGUCUGAGAGGAUGAUCAGCCACACUGGGACUGAGACACGGCCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGGACAAUGGGGGCAACCCUGAUCCAGCAAUGCCGCGUGUGUGAAGAAGGUCUUCGGAUUGUAAAGCACUUUCGACGGGGACGAUGAUGACGGUACCCGUAGAAGAAGCCCCGGCUAACUUCGUGCCAGCAGCCGCGGUAAUACGAAGGGGGCUAGCGUUGCUCGGAAUGACUGGGCGUAAAGGGCGCGUAGGCGGUUGACACAGUCAGAUGUGAAAUUCCAGGGCUUAACCUUGGGGCUGCAUUUGAGACGUGUUGACUGGAGUUCGAGAGAGGGUUGUGGAAUUCCCAGUGUAGAGGUGAAAUUCGUAGAUAUUGGGAAGAACACCGGUGGCGAAGGCGGCAACCUGGCUCGAUACUGACGCUGAGGCGCGAAAGCGUGGGGAGCAAACAGGAUUAGAUACCCUGGUAGUCCACGCUGUAAACGAUGUGUGCUGGAUGUUGGGUGACUUUGUCAUUCAGUGUCGAAGCUAACGCGCUAAGCACACCGCCUGGGGAGUACGGCCGCAAGGUUGAAACUCAAAGGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGAAGCAACGCGCAGAACCUUACCAGGGCUUGACAUGGGGAGGCUGUGUCCAGAGAUGGGCAUUUCCCGCAAGGGACCUCCUGCACAGGUGCUGCAUGGCUGUCGUCAGCUCGUGUCGUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCUUGCCUUUAGUUGCCAGCAUGAUCGGGUGGGCACUCUAGAGGAACUGCCGGUGACAAGCCGGAGGAAGGUGGGGAUGACGUCAAGUCCUCAUGGCCCUUAUGUCCUGGGCUACACACGUGCUACAAUGGCGGUGACAGUGGGAAGCCAGGCAGUGAUGCUGAGCUGAUCUCAAAAAGCCGUCUCAGUUCGGAUUGCACUCUGCAACUCGGGUGCAUGAAGGUGGAAUCGCUAGUAAUCGCGGAUCAGCAUGCCGCGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACACCAUGGGAGUUGGUUUGACCUUAAGCCGGUGAGCGAACCGCAAGGACGCAGCCGACCACGGUCAGGUCAGCGACU1 4 | -------------------------------------------------------------------------------- /data/16S-25/k5group16/16S_rRNA_database_Alphaproteobacteria-AB166735.seq: -------------------------------------------------------------------------------- 1 | ; 2 | AB166735.seq 3 | GUUUUAUAUCUGGCUCAGAGCGAACGCUGGCGGCAUGCUUAACACAUGCAAGUCGCACGAACCUUUCGGGGUUAGUGGCGGACGGGUGAGUAACGCGUAGGGAUCUGUCCAUGGGUGGGGGAUAACUUUGGGAAACUGAAGCUAAUACCGCAUGACACCUGAGGGUCAAAGGCGCGAGUCGCCUGUGGAGGAACCUGCGUUCGAUUAGCUAGUUGGUGGGGUAAAGGCCUACCAAGGCGAUGAUCGAUAGCUGGUCUGAGAGGAUGAUCAGCCACACUGGGACUGAGACACGGCCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGGACAAUGGGCGCAAGCCUGAUCCAGCAAUGCCGCGUGUGUGAAGAAGGUUUUCGGAUUGUAAAGCACUUUCAGCGGGGACGAUGAUGACGGUACCCGCAGAAGAAGCCCCGGCUAACUUCGUGCCAGCAGCCGCGGUAAUACGAAGGGGGCAAGCGUUGCUCGGAAUGACUGGGCGUAAAGGGCGCGUAGGCGGUUGUUACAGUCAGAUGUGAAAUUCCCGGGCUUAACCUGGGGGCUGCAUUUGAUACGUGACGACUAGAGUGUGAGAGAGGGUUGUGGAAUUCCCAGUGUAGAGGUGAAAUUCGUAGAUAUUGGGAAGAACACCGGUGGCGAAGGCGGCAACCUGGCUCAUGACUGACGCUGAGGCGCGAAAGCGUGGGGAGCAAACAGGAUUAGAUACCCUGGUAGUCCACGCUGUAAACGAUGUGUGCUGGAUGUUGGAUGGCUUGGCCAUUCAGUGUCGUAGUUAACGCGAUAAGCACACCGCCUGGGGAGUACGGCCGCAAGGUUGAAACUCAAAGGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGAAGCAACGCGCAGAACCUUACCAGGACUUGACAUGCGGAGGCUGUGUCCAGAGAUGGGCAUUUCUCGCAAGAGACCUCCAGCACAGGUGCUGCAUGGCUGUCGUCAGCUCGUGUCGUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCUCGCCUUUAGUUGCCAGCACGUCUGGGUGGGCACUCUAAAGGAACUGCCGGUGACAAGCCGGAGGAAGGUGGGGAUGACGUCAAGUCCUCAUGGCCCUUAUGUCCUGGGCUACACACGUGCUACAAUGGCGGUGACAGUGGGAAGCCAGGCAGCGAUGCCGAGCGGAUCUCCAAAAGCCGUCUCAGUUCGGAUUGCACUCUGCAACUCGAGUGCAUGAAGGUGGAAUCGCUAGUAAUCGCGGAUCAGCAUGCCGCGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACACCAUGGGAGUUGGUUUGACCUUAAGCCGGUGAGCGAACCGCAAGGACGCAGCCGACCACGGUCGGGUCAGCGACUGGG1 4 | -------------------------------------------------------------------------------- /data/16S-25/k5group17/16S_rRNA_database_Alphaproteobacteria-AJ810380.seq: -------------------------------------------------------------------------------- 1 | ; 2 | AJ810380.seq 3 | ACGAACGCUGGCGGCAGGCUUAACACAUGCAAGUCGAGCGCCCCGCAAGGGGAGCGGCAGACGGGUGAGUAACGCGUGGGAAUCUACCCUUGACUACGGAAUAACGCAGGGAAACUUGUGCUAAUACCGUAUGUGUCCUUCGGGAGAAAGAUUUAUCGGUCAAGGAUGAGCCCGCGUUGGAUUAGCUAGUUGGUGGGGUAAAGGCCUACCAAGGCGACGAUCCAUAGCUGGUCUGAGAGGAUGAUCAGCCACAUUGGGACUGAGACACGGCCCAAACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGGACAAUGGGCGCAAGCCUGAUCCAGCCAUGCCGCGUGAGUGAUGAAGGCCCUAGGGUUGUAAAGCUCUUUCACCGGAGAAGAUAAUGACGGUAUCCGGAGAAGAAGCCCCGGCUAACUUCGUGCCAGCAGCCGCGGUAAUACGAAGGGGGCUAGCGUUGUUCGGAAUUACUGGGCGUAAAGCGCACGUAGGCGGAUCGAUCAGUCAGGGGUGAAAUCCCAGGGCUCAACCCUGGAACUGCCUUUGAUACUGUCGAUCUGGAGUAUGGAAGAGGUGAGUGGAAUUCCGAGUGUAGAGGUGAAAUUCGUAGAUAUUCGGAGGAACACCAGUGGCGAAGGCGGCUCACUGGUCCAUUACUGACGCUGAGGUGCGAAAGCGUGGGGAGCAAACAGGAUUAGAUACCCUGGUAGUCCACGCCGUAAACGAUGAAUGUUAGCCGUCGGGCAGUAUACUGUUCGGUGGCGCAGCUAACGCAUUAAACAUUCCGCCUGGGGAGUACGGUCGCAAGAUUAAAACUCAAAGGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGAAGCAACGCGCAGAACCUUACCAGCCCUUGACAUGCCCGGCUACUUGCAGAGAUGCAAGGUUCCCUUCGGGGACCGGGACACAGGUGCUGCAUGGCUGUCGUCAGCUCGUGUCGUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCUCGCCCUUAGUUGCCAGCAUUCAGUUGGGCACUCUAAGGGGACUGCCGGUGAUAAGCCGAGAGGAAGGUGGGGAUGACGUCAAGUCCUCAUGGCCCUUACGGGCUGGGCUACACACGUGCUACAAUGGUGGUGACAGUGGGCAGCGAGCACGCGAGUGUGAGCUAAUCUCCAAAAGCCAUCUCAGUUCGGAUUGCACUCUGCAACUCGAGUGCAUGAAGUUGGAAUCGCUAGUAAUCGCGGAUCAGCAUGCCGCGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACACCAUGGGAGUUGGUUUUACCCGAAGGUAGUGCGCUAACCGCAAGGAGGCAGCUAACCACGGUAGGGUCAGCGACUGGGGUG1 4 | -------------------------------------------------------------------------------- /data/16S-25/k5group17/16S_rRNA_database_Alphaproteobacteria-AY513533.seq: -------------------------------------------------------------------------------- 1 | ; 2 | AY513533.seq 3 | CUCAGAACGAACGCUGGCGGCAGGCUUAACACAUGCAAGUCGAGCGCCCCGCAAGGGGAGCGGCAGACGGGUGAGUAACGCGUGGGAACGUACCAUUUGCUACGGAAUAACUCAGGGAAACUUGUGCUAAUACCGUAUGUGCCCUUCGGGGGAAAGAUUUAUCGGCAAAUGAUCGGCCCGCGUUGGAUUAGCUAGUUGGUGGGGUAAAGGCUCACCAAGGCGACGAUCCAUAGCUGGUCUGAGAGGAUGAUCAGCCACACUGGGACUGAGACACGGCCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGGACAAUGGGCGCAAGCCUGAUCCAGCCAUGCCGCGUGAGUGAUGAAGGCCCUAGGGUUGUAAAGCUCUUUCACCGGUGAAGAUAAUGACGGUAACCGGAGAAGAAGCCCCGGCUAACUUCGUGCCAGCAGCCGCGGUAAUACGAAGGGGGCUAGCGUUGUUCGGAUUUACUGGGCGUAAAGCGCACGUAGGCGGACUUUUAAGUCAGGGGUGAAAUCCCGGGGCUCAACCCCGGAACUGCCUUUGAUACUGGAAGUCUUGAGUAUGGUAGAGGUGAGUGGAAUUCCGAGUGUAGAGGUGAAAUUCGUAGAUAUUCGGAGGAACACCAGUGGCGAAGGCGGCUCACUGGACCAUUACUGACGCUGAGGUGCGAAAGCGUGGGGAGCAAACAGGAUUAGAUACCCUGGUAGUCCACGCCGUAAACGAUGAAUGUUAGCCGUCGGGGUGUUUACACUUCGGUGGCGCAGCUAACGCAUUAAACAUUCCGCCUGGGGAGUACGGUCGCAAGAUUAAAACUCAAAGGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGAAGCAACGCGCAGAACCUUACCAGCCCUUGACAUCCCGGUCGCGGUUAGUGGAGACACUAUCCUUCAGUUAGGCUGGACCGGAGACAGGUGCUGCAUGGCUGUCGUCAGCUCGUGUCGUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCUCGCCCUUAGUUGCCAGCAUUCAGUUGGGCACUCUAAGGGGACUGCCGGUGAUAAGCCGAGAGGAAGGUGGGGAUGACGUCAAGUCCUCAUGGCCCUUACGGGCUGGGCUACACACGUGCUACAAUGGUGGUGACAGUGGGCAGCGAGCACGCGAGUGUGAGCUAAUCUCCAAAAGCCAUCUCAGUUCGGAUUGCACUCUGCAACUCGAGUGCAUGAAGUUGGAAUCGCUAGUAAUCGCGGAUCAGCAUGCCGCGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACACCAUGGGAGUUGGUUUUACCCGAAGGCGCUGUGCUAACCGCAAGGAGGCAGGCGACCACGGUAGGGUCAGCGACUGGGGUG1 4 | -------------------------------------------------------------------------------- /data/16S-25/k5group17/16S_rRNA_database_Alphaproteobacteria-AY697904.seq: -------------------------------------------------------------------------------- 1 | ; 2 | AY697904.seq 3 | GAGUUUGAUCCUGGCUCAAAACGACACGCUGGCGGCAGGCCUAACACAUGCAAGUCGAGCGCUACCUUCGGGUGGAGCGGCGGACGGGUUAGUAACGCGGGGAAAUAUACCCUUCACUAUGGAAUAGCCUCGGGAAACUGAGAGUAAUACCAUAUACGCCCUUCGGGGGAAAGAUUUAUCGGUGAAGGAUUAGCCCGCGUAAAAUUAGAUAGUUGGGGGGGUAAUGGCCUACCAAGUCUACAAUCUUUAGCUGGUUUUAGAGGAUGAUCAGCAACACUGGGACUGAGACACGGCCCAGACUCCUACGGGAGGCAGCAGGGGGGAAUCUUAGACAAUGGGCGCAAGCCUGAUCUAGCCAUGCCGCGUGAGUGAUGAAGGUCUUAGGAUCGUAAAGCUCUUUCGCUAGGGAUGAUAAUGACAGUACCUAGUAAAGAAGCCCCGGCUAACUCCGUGCCAGCAGCCGCGGUAAUACGGAGGGGGCUAGCGUUGUUCGGAAUUACUGGGCGUAAAGCGUACGUAGGCGGAUCAGAAAGUAUGGGGUGAAAUCCCAGGGCUUAACCCUGGAACUGCCUCAUAAACUCCUGGUCUUGAGUUCGAGAGAGGUGAGUGGAAUUCCAAGUGUAGAGGUGAAAUUCGUAGAUAUUUGGAGGAACACCAGUGGCGAAGGCGGCUCACUGGCUCGAUACUGACGCUGAGGUACGAAAGUGUGGGGAGCAAACAGGAUUAGAUACCCUGGUAGUCCACACCGUAAACGAUGAAUGCCAGUCGUCGGGCAGUAUACUGUUCGGUGACACACCUAACGGAUUAAGCAUUCCGCCUGGGGAGUACGGUCGCAAGAUUAAAACUCAAAGGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGAAGCAACGCGCAGAACCUUACCAACCCUUGACAUGCCUGGACAAUCCGAGAGAUCGGACUUUCCUUCGGGACCAGUGCACAGGUGCUGCAUGGCUGUCGUCAGCUCGUGUCGUGAGAUGUUCGGUUAAGUCCGGCAACGAGCGCAACCCACAUCUUUAGUUGCCAGCAGGUUAAGCUGGGCACUCUAAAGAAACUGCCCGUGAUAAGCGGGAGGAAGGUGUGGAUGACGUCAAGUCCUCAUGGCCCUUACGGGUUGGGCUACACACGUGCUACAAUGGCAGUGACAAUGGGUUAAUCCCAAAAAACUGUCUCAGUUCGGAUUGGGGUCUGCAACUCGACCCCAUGAAGUCGGAAUCGCUAGUAAUCGCGUAACAGCAUGACGCGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACACCAUGGGAGUUGGUUCUACCCGACGACGCUGCGCUAACCCUUCGGGGAGGCAGGCGGCCACGGUAGGAUCAGCGACUGGGGUGAAGUCGUAACAAGGUAGCCGU1 4 | -------------------------------------------------------------------------------- /data/16S-25/k5group17/16S_rRNA_database_Alphaproteobacteria-M84687.seq: -------------------------------------------------------------------------------- 1 | ; 2 | M84687.seq 3 | AAUGAACGCUGGCGGCAGGCCUAACACAUGCAAGUCGAACGGAGUUAUAUUGUAGCUUGCUAUGGUAUAACUUAGUGGCAGACGGGUGAGUAAUGUAUAGGAAUCUACCUAGUAGUACGGAAUAAUUGUUGGAAACGGCAACUAAUACCGUAUACGCCCUANNGGGGAAAAAUUUAUUGCUAUUAGAUGAGCCUAUAUUAGAUUAGCUAGUUGGUGGAGUAAUAGCCUACCAAGGCAAUGAUCUAUAGCUGAUCUGAGAGGAUGAUCAGCCACACUGGAACUGAGAUACGGUCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGGACAAUGGGCGAAANNNUGAUCCAGCCAUGCCGCAUGAGUGAAGAAGGCCUUUGGGUUGUAAAGCUCUUUUAGUGAGGAAGAUAAUGACGGUACUCACAGAAGAAGUCCUGGCUAACUCCGUGCCAGCAGCCGCGGUAAUACGGAGAGGGCUAGCGUUAUUCGGAAUUAUUGGGCGUAAAGGGCGCGUAGNNGAUUAGUAAGUUAAAAGUGAAAUCCCAAGGCUCAACCUUGGAAUAGCUUUUAAAACUGCUAAUCUAGAGAUUGAGAGAGGAUAGAGGAAUUCCUAGUGUAGAGGUGAAAUUCGUAAAUAUUAGGAGGAACACCAGUGGCGAAGGCGUCUAUCUGGUUCAAAUCUGACGCUGAGGCGCGAAGGCGUGGGGAGCAAACAGGAUUAGAUACCCUGGUAGUCCACGCUGUAAACGAUGAAUGUUAAAUAUGGGAAGUUUUACUUUCUGUAUUACAGCUAACGCGUUAAACAUUCCGCCUGGGGACUACGGUCGCAAGAUUAGAACUCAAAGGAAUUGACGGGGACCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGAUGCAACGCGAAAAACCUUACCACUCCUUGACAUGGAAAUCAUACCUAUUCGAAGGGAUAGGGUCGGUUCGGCCGGAUUUUACACAAGUGUUGCAUGGCUGUCGUCAGCUCGUGUCGUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCUCAUCCUUAGUUGCUAUCAGGUAAUGCUGAGUACUUUAAGGAAACUGCCAGUGAUAAGCUGGAGGAAGGUGGGGAUGAUGUCAAGUCAUCAUGGCCUUUAUAGAGUGGGCUACACACGUGCUACAAUGGUGUCUACAAUGGGCUGCAAGGUGCGCAAGCCUAGCUAAUCCCUAAAAGACAUCUCAGUUCGGAUUGUACUCUGCAACUCGAGUACAUGAAGUUGGAAUCGCUAGUAAUCGUGGAUCAGCAUGCCACGGUGAAUACGUUCUCGGGUCUUGUACACACUGCCCGUCACGCCAUGGGAAUUGGUUUCACUCGAAGCUAAUGGCCUAACCGCAAGAAGGAGUUAUUUAAAGUGGGAUCAGUGACCGGGGUG1 4 | -------------------------------------------------------------------------------- /data/16S-25/k5group18/16S_rRNA_database_Alphaproteobacteria-DQ202330.seq: -------------------------------------------------------------------------------- 1 | ; 2 | DQ202330.seq 3 | ACUGGUGAGUUUACCAUGCAGCCGUAACGGGCGUAGCAAUACGUCAGCGGCAGACGGGUGAGUAACGCGUGGGAACGUACCUUUUGGUUCGGAACAACACAGGGAAACUUGUGCUAAUACCGGAUAAGCCCUUACGGGGAAAGAUUUAUCGCCGAAAGAUCGGCCCGCGUCUGAUUAGCUAGUUGGUGAGGUAAUGGCUCACCAAGGCGACGAUCAGUAGCUGGUCUGAGAGGAUGAUCAGCCACAUUGGGACUGAGACACGGCCCAAACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGGACAAUGGGGGCAACCCUGAUCCAGCCAUGCCGCGUGAGUGAUGAAGGCCCUAGGGUUGUAAAGCUCUUUUGUGCGGGAAGAUAAUGACGGUACCGCAAGAAUAAGCCCCGGCUAACUUCGUGCCAGCAGCCGCGGUAAUACGAAGGGGGCUAGCGUUGCUCGGAAUCACUGGGCGUAAAGGGGGCGUAGGCGGGUCUUUAAGUCAGGGGUGAAAUCCUGGAGCUCAACUCCAGAACUGCCUUUGAUACUGAAGAUCUUGAGUUCGGGAGAGGUGAGUGGAACUGCGAGUGUAGAGGUGAAAUUCGUAGAUAUUCGCAAGAACACCAGUGGCGAAGGCGGCUCACUGGCCCGAUACUGACGCUGAGGCACGAAAGCGUGGGGAGCAAACAGGAUUAGAUACCCUGGUAGUCCACGCCGUAAACGAUGAAUGCCAGCCGUUAGUGGGUUUACUCACUAGUGGCGCAGCUAACGCUUUAAGCAUUCCGCCUGGGGAGUACGGUCGCAAGAUUAAAACUCAAAGGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGACGCAACGCGCAGAACCUUACCAGCCCUUGACAUGUCCAGGACCGGUCGCAGAGAUGUGACCCUCUCUUCGGAGCCUGGAACACAGGUGCUGCAUGGCUGUCGUCAGCUCGUGUCGUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCCCGUCCUUAGUUGCUACCAUUUAGUUGAGCACUCUAAGGAGACUGCCGGUGAUAAGCCGCGAGGAAGGUGGGGAUGACGUCAAGUCCUCAUGGCCCUUACGGGCUGGGCUACACACGUGCUACAAUGGCGGUGACAAUGGGAUGCUAAGGGGCGACCCUUCGCAAAUCUCAAAAAGCCGUCUCAGUUCGGAUUGGGCUCUGCAACUCGAGCCCAUGAAGUUGGAAUCGCUAGUAAUCGUGGAUCAGCACGCCACGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACACCAUGGGAGUUGGUUUUACCUGAAGACGGUGCGCUAACCCGCAAGGGAGGCAGCCGGCCACGGUAGGGUCAGCGACUGGGGUGAAGUCGUAACAAGGUAGCCGUA1 4 | -------------------------------------------------------------------------------- /data/16S-25/k5group19/16S_rRNA_database_Alphaproteobacteria-AJ920036.seq: -------------------------------------------------------------------------------- 1 | ; 2 | AJ920036.seq 3 | GCGAACGCUGGCGGCAGGCUUAACACAUGCAAGUCGAGCGGGCGUAGCAAUACGUCAGCGGCAGACGGGUGAGUAACGCGUGGGAACGUACCUUUUGGUUCGGAACAACACAGGGAAACUUGUGCUAAUACCGGAUAAGCCCUUACGGGGAAAAUUUAUCGCCGAAAGAUCGGCCCGCGUCUGAUUAGCUAGUUGGUGAGGUAAUGGCUCACCAAGGCGACGAUCAGUAGCUGGUCUGAGAGGAUGAUCAGCCACAUUGGGACUGAGACACGGCCCAAACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGGACAAUGGGGGCAACCCUGAUCCAGCCAUGCCGCGUGAGUGAUGAAGGCCCUAGGGUUGUAAAGCUCUUUUGUGCGGGAAGAUAAUGACGGUACCGCAAGAAUAAGCCCCGGCUAACUUCGUGCCAGCAGCCGCGGUAAUACGAAGGGGGCUAGCGUUGCUCGGAAUCACUGGGCGUAAAGGGUGCGUAGGCGGGUCUUUAAGUCAGGGGUGAAAUCCUGGAGCUCAACUCCAGAACUGCCUUUGAUACUGAAGAUCUUGAGUCCGGGAGAGGUGAGUGGAACUGCGAGUGUAGAGGUGAAAUUCGUAGAUAUUCGCAAGAACACCAGUGGCGAAGGCGGCUCACUGGCCCGGUACUGACGCUGAGGCACGAAAGCGUGGGGAGCAAACAGGAUUAGAUACCCUGGUAGUCCACGCCGUAAACGAUGAAUGCCAGCCGUUAGUGGGUUUACUCACUAGUGGCGCAGCUAACGCUUUAAGCAUUCCGCCUGGGGAGUACGGUCGCAAGAUUAAAACUCAAAGGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGACGCAACGCGCAGAACCUUACCAGCCCUUGACAUGUCCAGGACCGGUCGCAGAGAUGUGACCUUCUCUUCGGAGCCUGGAGCACAGGUGCUGCAUGGCUGUCGUCAGCUCGUGUCGUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCCCGUCCUUAGUUGCUACCAUUUAGUUGAGCACUCUAAGGAGACUGCCGGUGAUAAGCCGCGAGGAAGGUGGGGAUGACGUCAAGUCCUCAUGGCCCUUACGGGCUGGGCUACACACGUGCUACAAUGGCGGUGACAAUGGGAUGCUAAGGGGCGACCCUUCGCAAAUCUCAAAAAGCCGUCUCAGUUCGGAUUGGGCUCUGCAACUCGAGCCCAUGAAGUUGGAAUCGCUAGUAAUCGUGGAUCAGCACGCCACGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACACCAUGGGAGUUGGUUUUACCUGAAGACGGUGCGCUAACCCGCAAGGGAGGCAGCCGGCCACGGUAGGGUCAGCGACUGGGGUG1 4 | -------------------------------------------------------------------------------- /data/16S-25/k5group19/16S_rRNA_database_Alphaproteobacteria-AM229669.seq: -------------------------------------------------------------------------------- 1 | ; 2 | AM229669.seq 3 | UAGAGUUUGAUCAUGGCUCAGAAUGAACGCUGGCGGCAUGCCUAACACAUGCAAGUCGAACGAAGGCUUCGGCCUUAGUGGCGCACGGGUGCGUAACGCGUGGGAAUCUGCCCCUUGGUUCGGAAUAACAGUUAGAAAUGACUGCUAAUACCGGAUGACGACGUAAGUCCAAAGAUUUAUCGCCGAGGGAUGAGCCCGCGUAGGAUUAGCUAGUUGGUGUGGUAAGAGCGCACCAAGGCGACGAUCCUUAGCUGGUCUGAGAGGAUGAUCAGCCACACUGGGACUGAGACACGGCCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGGACAAUGGGCGAAAGCCUGAUCCAGCAAUGCCGCGUGAGUGAUGAAGGCCUUAGGGUUGUAAAGCUCUUUUACCCGGGAUGAUAAUGACAGUACCGGGAGAAUAAGCUCCGGCUAACUCCGUGCCAGCAGCCGCGGUAAUACGGAGGGAGCUAGCGUUAUUCGGAAUUACUGGGCGUAAAGCGCACGUAGGCGGCUUUGUAAGUUAGAGGUGAAAGCCUGGAGCUCAACUCCAGAAUUGCCUUUAAGACUGCAUCGCUCGAAUCCAGGAGAGGUGAGUGGAAUUCCGAGUGUAGAGGUGAAAUUCGUAGAUAUUCGGAAGAACACCAGUGGCGAAGGCGGCUCACUGGACUGGUAUUGACGCUGAGGUGCGAAAGCGUGGGGAGCAAACAGGAUUAGAUACCCUGGUAGUCCACGCCGUAAACGAUGAUAACUAGCUGUCCGGGGACUUGGUCCUUGGGUGGCGCAGCUAACGCAUUAAGUUAUCCGCCUGGGGAGUACGGCCGCAAGGUUAAAACUCAAAUGAAUUGACGGGGGCCUGCACAAGCGGUGGAGCAUAUGGUUUAAUUCGAAGCAACGCGCAGAACCUUACCAGCGUUUGACAUGGUAGGACGACUUUCAGAGAUGGAUUUCUUCCCUUCGCGGACCUACACACAGGUGCUGCAUGGCUGUCGUCAGCUCGUGUCGUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCUCGCCUUUAGUUACCAUCAUUUAGUUGGGUACUCUAAAGGAACCGCCGGUGAUAAGCCGGAGGAAGGUGGGGAUGACGUCAAGUCCUCAUGGCCCUUACGCGCUGGGCUACACACGUGCUACAAUGGCAACUACAGUGGGCAGCAAUCCCGCGAGGGUGAGCUAAUCUCCAAAAGUUGUCUCAGUUCGGAUUGUUCUCUGCAACUCGAGAGCAUGAAGGCGGAAUCGCUAGUAAUCGCGGAUCAGCACGCCGCGGUGAAUACGUUCCCAGGCCUUGUACACACCGCCCGUCACACCAUGGGAGUUGGAUUCACCCGAAGGCGUCGCGCUAACCCGCAAGGGAGGCAGGCGACCACGG1 4 | -------------------------------------------------------------------------------- /data/16S-25/k5group19/16S_rRNA_database_Alphaproteobacteria-DQ354613.seq: -------------------------------------------------------------------------------- 1 | ; 2 | DQ354613.seq 3 | GCGAACGCUGGCGGCAGGCUUAACACAUGCAAGUCGAGCGGGCAUAGCAAUAUGUCAGCGGCAGACGGGUGAGUAACGCGUGGGAACGUACCUUUUGGUUCGGAACAACACAGGGAAACUUGUGCUAAUACCGGAUAAGCCCUUACGGGGAAAGAUUUAUCGCCGAAAGAUCGGCCCGCGUCUGAUUAGCUAGUUGGUGAGGUAAUGGCUCACCAAGGCGACGAUCAGUAGCUGGUCUGAGAGGAUGAUCAGCCACAUUGGGACUGAGACACGGCCCAAACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGGACAAUGGGCGCAAGCCUGAUCCAGCCAUGCCGCGUGAGUGAUGAAGGCCCUAGGGUUGUAAAGCUCUUUUGUGCGGGAAGAUAAUGACGGUACCGCAAGAAUAAGCCCCGGCUAACUUCGUGCCAGCAGCCGCGGUAAUACGAAGGGGGCUAGCGUUGCUCGGAAUCACUGGGCGUAAAGGGUGCGUAGGCGGGUCUUUAAGUCAGGGGUGAAAUCCUGGAGCUCAACUCCAGAACUGCCUUUGAUACUGAAGAUCUUGAGUUCGGGAGAGGUGAGUGGAACUGCGAGUGUAGAGGUGAAAUUCGUAGAUAUUCGCAAGAACACCAGUGGCGAAGGCGGCUCACUGGCCCGAUACUGACGCUGAGGCACGAAAGCGUGGGGAGCAAACAGGAUUAGAUACCCUGGUAGUCCACGCCGUAAACGAUGAAUGCCAGCCGUUAGUGGGUUUACUCACUAGUGGCGCAGCUAACGCUUUAAGCAUUCCGCCUGGGGAGUACGGUCGCAAGAUUAAAACUCAAAGGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGACGCAACGCGCAGAACCUUACCAGCCCUUGACAUCCCGGUCGCGGACUCCAGAGACGGAGUUCUUCAGUUCGGCUGGACCGGAGACAGGUGCUGCAUGGCUGUCGUCAGCUCGUGUCGUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCCCGUCCUUAGUUGCUACCAUUUAGUUGAGCACUCUAAGGAGACUGCCGGUGAUAAGCCGCGAGGAAGGUGGGGAUGACGUCAAGUCCUCAUGGCCCUUACGGGCUGGGCUACACACGUGCUACAAUGGCGGUGACAAUGGGAUGCUAAGGGGCGACCCUUCGCAAAUCUCAAAAAGCCGUCUCAGUUCGGAUUGGGCUCUGCAACUCGAGCCCAUGAAGUUGGAAUCGCUAGUAAUCGUGGAUCAGCACGCCACGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACACCAUGGGAGUUGGUUUUACCUGAAGACGGUGCGCUAACCCGCAAGGGAGGCAGCCGGCCACGGUAGGGUCAGCGACUGGGGUG1 4 | -------------------------------------------------------------------------------- /data/16S-25/k5group19/16S_rRNA_database_Alphaproteobacteria-L28944.seq: -------------------------------------------------------------------------------- 1 | ; 2 | L28944.seq 3 | CGCUAUCGGUAUGCUUAACACAUGCAAGUCGGACGGACUAAUUGGGGCUUGCUCCAAUUAGUUAGUGGCAGACGGGUGAGUAACACGUGGGAAUCUACCCAUCAGUACGGAAUAACUUUUAGAAAUAAAAGCUAAUACCGUAUAUUCUCUACAGAGGAAAGAUUUAUCGCUGAUGGAUGAGCCCGCGUCAGAUUAGGUAGUUGGUGAGGUAACGGCUCACCAAGCCGACGAUCUGUAGCUGGUCUGAGAGGAUGAUCAGCCACACUGGGACUGAGACACGGCCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGGACAAUGGGCGAAAGCCUGAUCCAGCAAUACCGAGUGAGUGAUGAAGGCCCUAGGGUUGUAAAGCUCUUUUAGCAAGGAAGAUAAUGACGUUACUUGCAGAAAAAGCCCCGGCUAACUCCGUGCCAGCAGCCGCGGUAAGACGGAGGGGGCUAGCGUUGUUCGGAAUUACUGGGCGUAAAGAGUGCGUAGGCGGUUUAGUAAGUUGGAAGUGAAAGCCCGGGGCUUAACCUCGGAAUUGCUUUCAAAACUACUAAUCUAGAGUGUAGUAGGGGAUGAUGGAAUUCCUAGUGUAGAGGUGAAAUUCUUAGAUAUUAGGAGGAACACCGGUGGCGAAGGCGGUCAUCUGGGCUACAACUGACGCUGAUGCACGAAAGCGUGGGGAGCAAACAGGAUUAGAUACCCUGGUAGUCCACGCCGUAAACGAUGAGUGCUAGAUAUCGGAAGAUUCUCUUUCGGUUUCGCAGCUAACGCAUUAAGCACUCCGCCUGGGGAGUACGGUCGCAAGAUUAAAACUCAAAGGAAUUGACGGGGGCUCGCACAAGCGGUGGAGCAUGCGGUUUAAUUCGAUGUUACGCGAAAAACCUUACCAACCCUUGACAUGGUGGUCGCGGAUCGCAGAGAUGCUUUCCUUCAGCUCGGCUGGACCACACACAGGUGUUGCAUGGCUGUCGUCAGCUCGUGUCGUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCUCAUUCUUAUUUGCCAGCGGGUAAUGCCGGGAACUAUAAGAAAACUGCCGGUGAUAAGCCGGAGGAAGGUGGGGACGACGUCAAGUCAUCAUGGCCCUUACGGGUUGGGCUACACGCGUGCUACAAUGGUGUUUACAGAGGGAAGCAAGACGGCGACGUGGAGCAAAUCCCUAAAAGACAUCUCAGUUCGGAUUGUUCUCUGCAACUCGAGAGCAUGAAGUUGGAAUCGCUAGUAAUCGCGGAUCAGCAUGCCGCGGUGAAUACGUUCUCGGGCCUUGUACACACUGCCCGUCACGCCAUGGGAGUUGGUUUUACCUGAAGGUGGUGAGCUAACGCAAGAGGCAGCCAACCACGGUAAAAUUAGCGAC1 4 | -------------------------------------------------------------------------------- /data/16S-25/k5group2/16S_rRNA_database_Alphaproteobacteria-AY513495.seq: -------------------------------------------------------------------------------- 1 | ; 2 | AY513495.seq 3 | CUCAGAACGAACGCUGGCGGCAGGCUUAACACAUGCAAGUCGAGCGCCCCGCAAGGGGAGCGGCAGACGGGUGAGUAACGCGUGGGAACGUACCUUUUGCUACGGAAUAACUCAGGGAAACUUGUGCUAAUACCGUAUGUGCCCUUCGGGGGAAAGAUUUAUCGGCAAAGGAUCGGCCCGCGUUGGAUUAGCUAGUUGGUGAGGUAAAGGCUCACCAAGGCGACGAUCCAUAGCUGGUCUGAGAGGAUGAUCAGCCACACUGGGACUGAGACACGGCCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGGACAAUGGGCGCAAGCCUGAUCCAGCCAUGCCGCGUGAGUGAUGAAGGCCCUAGGGUUGUAAAGCUCUUUCACCGGUGAAGAUAAUGACGGUAACCGGAGAAGAAGCCCCGGCUAACUUCGUGCCAGCAGCCGCGGUAAUACGAAGGGGGCUAGCGUUGUUCGGAUUUACUGGGCGUAAAGCGCACGUAGGCGGACUUUUAAGUCAGGGGUGAAAUCCCGGGGCUCAACCCCGGAACUGCCUUUGAUACUGGAAGUCUUGAGUAUGGUAGAGGUGAGUGGAAUUCCGAGUGUAGAGGUGAAAUUCGUAGAUAUUCGGAGGAACACCAGUGGCGAAGGCGGCUCACUGGACCAUUACUGACGCUGAGGUGCGAAAGCGUGGGGAGCAAACAGGAUUAGAUACCCUGGUAGUCCACGCCGUAAACGAUGAAUGUUAGCCGUUGGGGAGUUUACUCUUCGGUGGCGCAGCUAACGCAUUAAACAUUCCGCCUGGGGAGUACGGUCGCAAGAUUAAAACUCAAAGGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGAAGCAACGCGCAGAACCUUACCAGCCCUUGACAUACCGGUCGCGGACACAGAGAUGUGUCUUUCAGUUCGGCUGGACCGGAUACAGGUGCUGCAUGGCUGUCGUCAGCUCGUGUCGUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCUCGCCCUUAGUUGCCAGCAUUUAGUUGGGCACUCUAAGGGGACUGCCGGUGAUAAGCCGAGAGGAAGGUGGGGAUGACGUCAAGUCCUCAUGGCCCUUACGGGCUGGGCUACACACGUGCUACAAUGGUGGUGACAGUGGGCAGCGAGCACGCGAGUGUGAGCUAAUCUCCAAAAGCCAUCUCAGUUCGGAUUGCACUCUGCAACUCGAGUGCAUGAAGUUGGAAUCGCUAGUAAUCGCGGAUCAGCAUGCCGCGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACACCAUGGGAGUUGGUUUUACCCGAAGGCGCUGUGCUAACCGCAAGGAGGCAGGCGACCACGGUAGGGUCAGCGACUGGGGUGAAGUCGUAA1 4 | -------------------------------------------------------------------------------- /data/16S-25/k5group2/16S_rRNA_database_Alphaproteobacteria-D30776.seq: -------------------------------------------------------------------------------- 1 | ; 2 | D30776.seq 3 | AGCGAACGCUGGCGGCAUGCUUAACACAUGCAAGUCGCACGGGCAGUAGCAAUAUUGUCAGUGGCGGACGGGUGAGUAACGCGUAGGAAUCUAUCCUUGGAUGGGGGACAACCGUGGGAAACUACGGCUAAUACCGCAUAAUGCCUGAGGGCCAAAGACGUAAGUCGUCUGGGGAGGAGCCUGCGUCUGAUUAGGUAGUUGGUGGGGUAAAGGCCUACCAAGCCUGCGAUCAGUAGCUGGUCUGAGAGGAUGAUCAGCCACAUUGGGACUGAGACACGGCCCAAACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGGACAAUGGGGGCAACCCUGAUCCAGCAAUGCCGCGUGGGUGAAGAAGGUUUUCGGAUUGUAAAGCCCUUUUGGCGGGGACGAUGAUGACGGUACCCGCAGAAUAAGCUCCGGCUAACUUCGUGCCAGCAGCCGCGGUAAUACGAAGGGGGCUAGCGUUGCUCGGAAUGACUGGGCGUAAAGGGCGCGUAGGCGGCUUACAUAGUUAGGCGUGAAAUUCCUGGGCUCAACCUGGGGACUGCGUCUAAUACAUGUAGGCUUGAGUGUGAAAGAGGGUCGUGGAAUUUCCAGUGUAGAGGUGAAAUUCGUAGAUAUUGGAAAGAACACCGGUGGCGAAGGCGGCGACCUGGUUCAUUACUGACGCUGAGGCGCGAAAGCGUGGGGAGCAAACAGGAUUAGAUACCCUGGUAGUCCACGCUGUAAACGAUGUGUGCUGGAUGUUGGGGUGCUUAGCACUUCAGUGUCGUAGCUAACGCGGUAAGCACACCGCCUGGGGAGUACGGCCGCAAGGUUGAAACUCAAAGGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGAAGCAACGCGCAGAACCUUACCAGGAUUUGACAUGGAAGAGACGUGCCCAGAGAUGGGUAUUCCCGCAAGGGCUCUUUGCACAGGUGCUGCAUGGCUGUCGUCAGCUCGUGUCGUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCUCGCCUUUAGUUGCCAGCACGUUUGGGUGGGCACUCUAGAGGAACUGCCGGUGACAAGCCGGAGGAAGGUGGGGAUGACGUCAAGUCCUCAUGGCCCUUAUGUCCUGGGCUACACACGUGCUACAAUGGCGGUGACAGUGGGAAGCCAAGCAGCGAUGCUGAGCUGAUCCUGAAAAGCCGUCUCAGUUCGGAUUGCACUCUGCAACUCGGGUGCAUGAAGGUGGAAUCGCUAGUAAUCGCGGAUCAGCAUGCCGCGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACACCAUGGGAUUUGGUUUGACCUUAAGUUGAUGCGCUAACCGCAAGGAGGCAGUCAACCACGGUCGGGUCAGAGACUGGGGUG1 4 | -------------------------------------------------------------------------------- /data/16S-25/k5group20/16S_rRNA_database_Alphaproteobacteria-AB110711.seq: -------------------------------------------------------------------------------- 1 | ; 2 | AB110711.seq 3 | UCAGAGCGAACGCUGGCGGCAUGCUUAACACAUGCAAGUCGCACGAGGGUUUCGGCCCUAGUGGCGGACGGGUGAGUAGCGCGUAGGGAUCUGUCCAUGGGUGGGGGAUAACACUGGGAAACUGGUGCUAAUACCGCAUGAUGCCUGAGGGCCAAAGGCGCAAGUCGCCUGUGGAGGAGCCUGCGUUCGAUUAGCUUGUUGGUGGGGUAAAGGCCUACCAAGGCGAUGAUCGAUAGCUGGUCUGAGAGGAUGAUCAGCCACACUGGGACUGAGACACGGCCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGGACAAUGGGGGCAACCCUGAUCCAGCAAUGCCGCGUGUGUGAAGAAGGUCUUCGGAUUGUAAAGCACUUUCGACGGGGACGAUGAUGACGGUACCCGUAGAAGAAGCCCCGGCUAACUUCGUGCCAGCAGCCGCGGUAAUACGAAGGGGGCUAGCGUUGCUCGGAAUGACUGGGCGUAAAGGGCGCGUAGGCGGUUGACACAGUCAGAUGUGAAAUUCCAGGGCUUAACCUUGGGGCUGCAUUUGAGACGUGUUGACUGGAGUUCGAGAGAGGGUUGUGGAAUUCCCAGUGUAGAGGUGAAAUUCGUAGAUAUUGGGAAGAACACCGGUGGCGAAGGCGGCAACCUGGCUCGAUACUGACGCUGAGGCGCGAAAGCGUGGGGAGCAAACAGGAUUAGAUACCCUGGUAGUCCACGCUGUAAACGAUGUGUGCUGGAUGUUGGGUGACUUUGUCAUUCAGUGUCGAAGCUAACGCGCUAAGCACACCGCCUGGGGAGUACGGCCGCAAGGUUGAAACUCAAAGGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGAAGCAACGCGCAGAACCUUACCAGGGCUUGACAUGGGGAGGCUGUGUCCAGAGAUGGGCAUUUCCCGCAAGGGACCUCCUGCACAGGUGCUGCAUGGCUGUCGUCAGCUCGUGUCGUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCUUGCCUUUAGUUGCCAGCAUGAUCGGGUGGGCACUCUAGAGGAACUGCCGGUGACAAGCCGGAGGAAGGUGGGGAUGACGUCAAGUCCUCAUGGCCCUUAUGUCCUGGGCUACACACGUGCUACAAUGGCGGUGACAGUGGGAAGCCAGGCAGUGAUGCUGAGCUGAUCUCAAAAAGCCGUCUCAGUUCGGAUUGCACUCUGCAACUCGGGUGCAUGAAGGUGGAAUCGCUAGUAAUCGCGGAUCAGCAUGCCGCGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACACCAUGGGAGUUGGUUUGACCUUAAGCCGGUGAGCGAACCGCAAGGACGCAGCCGACCACGGUCAGGUCAGCGACU1 4 | -------------------------------------------------------------------------------- /data/16S-25/k5group21/16S_rRNA_database_Alphaproteobacteria-AF510612.seq: -------------------------------------------------------------------------------- 1 | ; 2 | AF510612.seq 3 | UAACACAUGCAAGUCGAGCGGGCAUAGCAAUAUGUCAGCGGCAGACGGGUGAGUAACGCGUGGGAACGUACCUUUUGGUUCGGAACAACACAGGGAAACUUGUGCUAAUACCGGAUAAGCCCUUACGGGGAAAGAUUUAUCGCCGAAAGAUCGGCCCGCGUCUGAUUAGCUAGUUGGUGAGGUAAUGGCUCACCAAGGCGACGAUCAGUAGCUGGUCUGAGAGGAUGAUCAGCCACAUUGGGACUGAGACACGGCCCAAACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGGACAAUGGGCGCAAGCCUGAUCCAGCCAUGCCGCGUGAGUGAUGAAGGCCCUAGGGUUGUAAAGCUCUUUUGUGCGGGAAGAUAAUGACGGUACCGCAAGAAUAAGCCCCGGCUAACUUCGUGCCAGCAGCCGCGGUAAUACGAAGGGGGCUAGCGUUGCUCGGAAUCACUGGGCGUAAAGGGUGCGUAGGCGGGUCUUUAAGUCAGGGGUGAAAUCCUGGAGCUCAACUCCAGAACUGCCUUUGAUACUGAAGAUCUUGAGUUCGGGAGAGGUGAGUGGAACUGCGAGUGUAGAGGUGAAAUUCGUAGAUAUUCGCAAGAACACCAGUGGCGAAGGCGGCUCACUGGCCCGAUACUGACGCUGAGGCACGAAAGCGUGGGGAGCAAACAGGAUUAGAUACCCUGGUAGUCCACGCCGUAAACGAUGAAUGCCAGCCGUUAGUGGGUUUACUCACUAGUGGCGCAGCUAACGCUUUAAGCAUUCCGCCUGGGGAGUACGGUCGCAAGAUUAAAACUCAAAGGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGACGCAACGCGCAGAACCUUACCAGCCCUUGACAUCCCGGUCGCGGACUCCAGAGACGGAGUUCUUCAGUUCGGCUGGACCGGAGACAGGUGCUGCAUGGCUGUCGUCAGCUCGUGUCGUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCCCGUCCUUAGUUGCUACCAUUUAGUUGAGCACUCUAAGGAGACUGCCGGUGAUAAGCCGCGAGGAAGGUGGGGAUGACGUCAAGUCCUCAUGGCCCUUACGGGCUGGGCUACACACGUGCUACAAUGGCGGUGACAAUGGGAUGCUAAGGGGCGACCCUUCGCAAAUCUCAAAAAGCCGUCUCAGUUCGGAUUGGGCUCUGCAACUCGAGCCCAUGAAGUUGGAAUCGCUAGUAAUCGUGGAUCAGCACGCCACGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACACCAUGGGAGUUGGUUUUACCUGAAGACGGUGCGCUAACCCGCAAGGGAGGCAGCCGGCCACGGUAGGGUCAGCGACUGGGGUGAAGUCGUAAC1 4 | -------------------------------------------------------------------------------- /data/16S-25/k5group21/16S_rRNA_database_Alphaproteobacteria-AJ420775.seq: -------------------------------------------------------------------------------- 1 | ; 2 | AJ420775.seq 3 | GCGGCAGGCUUAACACAUGCAAGUCGAGCGCCCCGCAAGGGGAGCGGCAGACGGGUGAGUAACGCGUGGGAAUCUACCCUUUUCUACGGAAUAACGCAGGGAAACUUGUGCUAAUACCGUAUACGCCCUUCGGGGGAAAGAUUUAUCGGGAAAGGAUGAGCCCGCGUUGGAUUAGCUAGUUGGUGGGGUAAAGGCCUACCAAGGCGACGAUCCAUAGCUGGUCUGAGAGGAUGAUCAGCCACAUUGGGACUGAGACACGGCCCAAACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGGACAAUGGGCGCAAGCCUGAUCCAGCCAUGCCGCGUGAGUGAUGAAGGCCCUAGGGUUGUAAAGCUCUUUCACCGGUGAAGAUAAUGACGGUAACCGGAGAAGAAGCCCCGGCUAACUUCGUGCCAGCAGCCGCGGUAAUACGAAGGGGGCUAGCGUUGUUCGGAAUUACUGGGCGUAAAGCGCACGUAGGCGGACAUUUAAGUCAGGGGUGAAAUCCCGGGGCUCAACCCCGGAACUGCCUUUGAUACUGGGUGUCUAGAGUAUGGAAGAGGUGAGUGGAAUUCCGAGUGUAGAGGUGAAAUUCGUAGAUAUUCGGAGGAACACCAGUGGCGAAGGCGGCUCACUGGUCCAUUACUGACGCUGAGGUGCGAAAGCGUGGGGAGCAAACAGGAUUAGAUACCCUGGUAGUCCACGCCGUAAACGAUGAAUGUUAGCCGUCGGGCAGUUUACUGUUCGGUGGCGCAGCUAACGCAUUAAACAUUCCGCCUGGGGAGUACGGUCGCAAGAUUAAAACUCAAAGGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGAAGCAACGCGCAGAACCUUACCAGCCCUUGACAUCCCGAUCGCGGAUUACGGAGACGUUUUCCUUCAGUUCGGCUGGAUCGGAGACAGGUGCUGCAUGGCUGUCGUCAGCUCGUGUCGUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCUCGCCCUUAGUUGCCAGCAUUUAGUUGGGCACUCUAAGGGGACUGCCGGUGAUAAGCCGAGAGGAAGGUGGGGAUGACGUCAAGUCCUCAUGGCCCUUACGGGCUGGGCUACACACGUGCUACAAUGGUGGUGACAGUGGGCAGCGAGACCGCGAGGUCGAGCUAAUCUCCAAAAGCCAUCUCAGUUCGGAUUGCACUCUGCAACUCGAGUGCAUGAAGUUGGAAUCGCUAGUAAUCGCAGAUCAGCAUGCUGCGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACACCAUGGGAGUUGGUUCUACCCGAAGGUAGUGCGCUAACCGCAAGGAGGCAGCUAACCACGGUAGGGUCAGCGACUGGGGUGAAGUCGUAACAAGGUAGCCGUAGGGGAACC1 4 | -------------------------------------------------------------------------------- /data/16S-25/k5group21/16S_rRNA_database_Alphaproteobacteria-L02887.seq: -------------------------------------------------------------------------------- 1 | ; 2 | L02887.seq 3 | AGAGUUUGAUCCUGGCUCAGAAUGAACNCUGGCGGCAGGCCUAACACAUGCAAGUCGAACGGAGUUAUGUUGUAGCUUGCUAUGGUAUAACUUAGUGGCAGACGGGUGAGUAAUGUAUAGGAAUCUACCUAGUAGUACGGAAUAAUUGUUGGAAACGGCAACUAAUACCGUAUACNCCCUAUGGGGGAAAAAUUUAUUGCUAUUAGAUGAGCCUAUAUUAGAUUAGCUAGUUGGUGGAGUAAUAGCCUACCAAGGCAAUGAUCUAUAGCUGAUCUGAGAGGAUGAUCAGCCACACUGGAACUGAGAUACGGUCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGGACAAUGGGCGAAANNNUGAUCCAGCCAUGCCGCAUGAGUGAAGAAGGCCUUUGGGUUGUAAAGCUCUUUUAGUGAGGAAGAUAAUGACGGUACUCACAGAAGAAGUCCUGGCUAACUCCGUGCCAGCAGCCGCGUAAUACGGAGAGGGCUAGCGUUAUUCGGAAUUAUUGGGCGUAAAGGGCGCGUAGGCUGGUUAAUAAGUUAAAAGUGAAAUCCCGAGGCUUAACCUUGGAAUUGCUUUUAAAACUAUUAGCCUAGAGAUUGAAAGAGGAUAGAGGAAUUCCUGAUGUAGAGGUAAAAUUCGUAAAUAUUAGGAGGAACACCAGUGGCGAAGGCGUCUAUCUGGUUCAAAUCUGACGCUGAAGCGCGAAGGCGUGGGGAGCAAACAGGAUUAGAUACCCUGGUAGUCCACGCUGUAAACGAUGAAUGUUAAAUAUGGGAAGUUUACUUUCUGUAUUACAGCUAACGCGUUAAGCAUUCCGCCUGGGGACUACGGUCGCAAGAUUAAAACUCAAAGGAAUUGACGGGGACCCGCACAAGCGNUGGAGCAUGUGGUUUAAUUCGAUGCAACGCGAAAAACCUUACCACUUCUUGACAUGGAAAUCAUACCUAUUCGAAGGGAUAGGGUCGGUUCGGCCGGAUUUUACACAAGUGUUGCAUGGCUGUCGUCAGCNCGUGUCGUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCUCAUCCUUAGUUGCCAUCAGGUAAUGCUGAGUACUUUAAGGAAACUGCCAGUGAUAAGCUGGAGGAAGGUGGGGAUGAUGUCAAGUCAUCAUGGCCUUUAUGGAGUGGGCUACACACGUGCUACAAUGGUGUCUACAAUGGGUUGCAAGGUGCGCAACGCUAAGCUAAUCCCUAAAAGACAUCUCAGUUCGGAUUGUACUCUGCAACUCGAGUACAUGAAGUUGGAAUCGCUAGUAAUCGUGGAUCAGCAUGCCACGGUGAAUACGUUCUCGGGUCUUGUACACACUGCCCGUCACGCCAUGGGAAUUGGUUUCACUCGAAGCUAAUGGCCUAACCGCAAGGAAGGAGUUAUUUAAAGUGGG1 4 | -------------------------------------------------------------------------------- /data/16S-25/k5group22/16S_rRNA_database_Alphaproteobacteria-AB178419.seq: -------------------------------------------------------------------------------- 1 | ; 2 | AB178419.seq 3 | AGCGAACGCUGGCGGCAUGCUUAACACAUGCAAGUCGCACGGAUCUUUCGGGAUUAGUGGCGGACGGGUGAGUAACGCGUAGGGAUCUAUCCACGGGUGGGGGACAACUCCGGGAAACUGGAGCUAAUACCGCAUGAUACCUGAGGGUCAAAGGCGCAAGUCGCCUGUGGAGGAACCUGCGUUCGAUUAGCUAGUUGGUGGGGUAAAGGCCUACCAAGGCGAUGAUCGAUAGCUGGUUUGAGAGGAUGAUCAGCCACACUGGGACUGAGACACGGCCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGGACAAUGGGCGAAAGCCUGAUCCAGCAAUGCCGCGUGUGUGAAGAAGGUCUUCGGAUUGUAAAGCACUUUCGACGGGGACGAUGAUGACGGUACCCGUAGAAGAAGCCCCGGCUAACUUCGUGCCAGCAGCCGCGGUAAUACGAAGGGGGCUAGCGUUGCUCGGAAUGACUGGGCGUAAAGGGCGCGUAGGCGGUUGAUGCAGUCAGAUGUGAAAUCCCCGGGCUUAACCUGGGAACUGCAUUUGAGACGCAUUGACUAGAGGUCGAGAGAGGGUUGUGGAAUUCCCAGUGUAGAGGUGAAAUUCGUAGAUAUUGGGAAGAACACCGGUGGCGAAGGCGGCAACCUGGCUCGAUACUGACGCUGAGGCGCGAAAGCGUGGGGAGCAAACAGGAUUAGAUACCCUGGUAGUCCACGCUGUAAACGAUGUGUGCUGGAUGUUGGGUAACUUAGUUACUCAGUGUCGAAGCUAACGCGCUAAGCACACCGCCUGGGGAGUACGGCCGCAAGGUUGAAACUCAAAGGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGAAGCAACGCGCAGAACCUUACCAGGGCUUGCAUGGGGAGGACGUACUCAGAGAUGGGUAUUUCUUCGGACCUCCCGCACAGGUGCUGCAUGGCUGUCGUCAGCUCGUGUCGUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCUUGUCUUUAGUUGCCAGCACUUUCAGGUGGGCACUCUAGAGAGACUGCCGGUGACAAGCCGGAGGAAGGUGGGGAUGACGUCAAGUCCUCAUGGCCCUUAUGUCCUGGGCUACACACGUGCUACAAUGGCGGUGACAGUGGGAAGCUAUGUGGUGACACAGUGCUGAUCUCUAAAAGCCGUCUCAGUUCGGAUUGUACUCUGCAACUCGAGUACAUGAAGGUGGAAUCGCUAGUAAUCGCGGAUCAGCAUGCCGCGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACACCAUGGGAGUUGGUUCGACCUUAAGCCGGUGAGCGAACCGCAAGGACGCAGCCGACCACGGACGGGUCAGCGACUGGGGUGAAG1 4 | -------------------------------------------------------------------------------- /data/16S-25/k5group23/16S_rRNA_database_Alphaproteobacteria-AF514705.seq: -------------------------------------------------------------------------------- 1 | ; 2 | AF514705.seq 3 | GCGAACGCUGGCGGCAGGCUUAACACAUGCAAGUCGAGCGGGCAUAGCAAUAUGUCAGCGGCAGACGGGUGAGUAACGCGUGGGAACGUACCUUUUGGUUCGGAACAACUGAGGGAAACUUCAGCUAAUACCGGAUAAGCCCUUACGGGGAAAGAUUUAUCGCCGAAAGAUCGGCCCGCGUCUGAUUAGCUAGUUGGUGAGGUAAUGGCUCACCAAGGCGACGAUCAGUAGCUGGUCUGAGAGGAUGAUCAGCCACAUUGGGACUGAGACACGGCCCAAACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGGACAAUGGGCGCAAGCCUGAUCCAGCCAUGCCGCGUGAGUGAUGAAGGCCCUAGGGUUGUAAAGCUCUUUUGUGCGGGAAGAUAAUGACGGUACCGCAAGAAUAAGCCCCGGCUAACUUCGUGCCAGCAGCCGCGGUAAUACGAAGGGGGCUAGCGUUGCUCGGAAUCACUGGGCGUAAAGGGUGCGUAGGCGGGUCUUUAAGUCAGGGGUGAAAUCCUGGAGCUCAACUCCAGAACUGCCUUUGAUACUGAAGAUCUUGAGUUCGGGAGAGGUGAGUGGAACUGCGAGUGUAGAGGUGAAAUUCGUAGAUAUUCGCAAGAACACCAGUGGCGAAGGCGGCUCACUGGCCCGAUACUGACGCUGAGGCACGAAAGCGUGGGGAGCAAACAGGAUUAGAUACCCUGGUAGUCCACGCCGUAAACGAUGAAUGCCAGCCGUUAGUGGGUUUACUCACUAGUGGCGCAGCUAACGCUUUAAGCAUUCCGCCUGGGGAGUACGGUCGCAAGAUUAAAACUCAAAGGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGACGCAACGCGCAGAACCUUACCAGCCCUUGACAUCCCGGUCGCGGACUCCAGAGACGGAGUUCUUCAGUUCGGCUGGACCGGAGACAGGUGCUGCAUGGCUGUCGUCAGCUCGUGUCGUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCCCGUCCUUAGUUGCUACCAUUUAGUUGAGCACUCUAAGGAGACUGCCGGUGAUAAGCCGCGAGGAAGGUGGGGAUGACGUCAAGUCCUCAUGGCCCUUACGGGCUGGGCUACACACGUGCUACAAUGGCGGUGACAAUGGGAUGCUAAGGGGCGACCCUUCGCAAAUCUCAAAAAGCCGUCUCAGUUCGGAUUGGGCUCUGCAACUCGAGCCCAUGAAGUUGGAAUCGCUAGUAAUCGUGGAUCAGCACGCCACGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACACCAUGGGAGUUGGUUUUACCUGAAGACGGUGCGCUAACCGAAAGGGGGCAGCCGGCCACGGUAGGGUCAGCGACUGGGGUG1 4 | -------------------------------------------------------------------------------- /data/16S-25/k5group24/16S_rRNA_database_Alphaproteobacteria-AY513529.seq: -------------------------------------------------------------------------------- 1 | ; 2 | AY513529.seq 3 | CUCAGAACGAACGCUGGCGGCAGGCUUAACACAUGCAAGUCGAGCGCCCCGCAAGGGGAGCGGCAGACGGGUGAGUAACGCGUGGGAACGUACCAUUUGCUACGGAAUAACUCAGGGAAACUUGUGCUAAUACCGUAUGUGCCCUUCGGGGGAAAGAUUUAUCGGCAAAUGAUCGGCCCGCGUUGGAUUAGCUAGUUGGUGGGGUAAAGGCUCACCAAGGCGACGAUCCAUAGCUGGUCUGAGAGGAUGAUCAGCCACACUGGGACUGAGACACGGCCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGGACAAUGGGCGCAAGCCUGAUCCAGCCAUGCCGCGUGAGUGAUGAAGGCCCUAGGGUUGUAAAGCUCUUUCACCGGUGAAGAUAAUGACGGUAACCGGAGAAGAAGCCCCGGCUAACUUCGUGCCAGCAGCCGCGGUAAUACGAAGGGGGCUAGCGUUGUUCGGAUUUACUGGGCGUAAAGCGCACGUAGGCGGACUUUUAAGUCAGGGGUGAAAUCCCGGGGCUCAACCCCGGAACUGCCUUUGAUACUGGAAGUCUUGAGUAUGGUAGAGGUGAGUGGAAUUCCGAGUGUAGAGGUGAAAUUCGUAGAUAUUCGGAGGAACACCAGUGGCGAAGGCGGCUCACUGGACCAUUACUGACGCUGAGGUGCGAAAGCGUGGGGAGCAAACAGGAUUAGAUACCCUGGUAGUCCACGCCGUAAACGAUGAAUGUUAGCCGUCGGGGUGUUUACACUUCGGUGGCGCAGCUAACGCAUUAAACAUUCCGCCUGGGGAGUACGGUCGCAAGAUUAAAACUCAAAGGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGAAGCAACGCGCAGAACCUUACCAGCCCUUGACAUCCCGGUCGCGGUUAGUGGAGACACUAUCCUUCAGUUAGGCUGGACCGGAGACAGGUGCUGCAUGGCUGUCGUCAGCUCGUGUCGUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCUCGCCCUUAGUUGCCAGCAUUCAGUUGGGCACUCUAAGGGGACUGCCGGUGAUAAGCCGAGAGGAAGGUGGGGAUGACGUCAAGUCCUCAUGGCCCUUACGGGCUGGGCUACACACGUGCUACAAUGGUGGUGACAGUGGGCAGCGAGCACGCGAGUGUGAGCUAAUCUCCAAAAGCCAUCUCAGUUCGGAUUGCACUCUGCAACUCGAGUGCAUGAAGUUGGAAUCGCUAGUAAUCGCGGAUCAGCAUGCCGCGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACACCAUGGGAGUUGGUUUUACCCGAAGGCGCUGUGCUAACCGCAAGGAGGCAGGCGACCACGGUAGGGUCAGCGACUGGGGUG1 4 | -------------------------------------------------------------------------------- /data/16S-25/k5group3/16S_rRNA_database_Alphaproteobacteria-AF395034.seq: -------------------------------------------------------------------------------- 1 | ; 2 | AF395034.seq 3 | UCAGAGCGAACGCUGGCGGCAGGCUUAACACAUGCAAGUCGAACGGGCUUCUUCGGAAGUCAGUGGCAGACGGGUGAGUAACACGUGGGAACGUGCCCUUCGGUUCGGAAUAACUCAGGGAAACUUGAGCUAAUACCGGAUACGCCCUUACGGGGAAAGGUUUACUGCCGAAGGAUCGGCCCGCGUCUGAUUAGCUUGUUGGUGGGGUAACGGCCUACCAAGGCGACGAUCAGUAGCUGGUCUGAGAGGAUGAUCAGCCACACUGGGACUGAGACACGGCCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGGACAAUGGGCGCAAGCCUGAUCCAGCCAUGCCGCGUGAGUGAUGAAGGCCUUAGGGUUGUAAAGCUCUUUUGUCCGGGACGAUAAUGACGGUACCGGAAGAAUAAGCCCCGGCUAACUUCGUGCCAGCAGCCGCGGUAAUACGAAGGGGGCUAGCGUUGCUCGGAAUCACUGGGCGUAAAGGGCGCGUAGGCGGCCGAUUAAGUCGGGGGUGAAAGCCUGUGGCUCAACCACAGAAUUGCCUUCGAUACUGGUUGGCUUGAGACCGGAAGAGGACAGCGGAACUGCGAGUGUAGAGGUGAAAUUCGUAGAUAUUCGCAAGAACACCAGUGGCGAAGGCGGCUGUCUGGUCCGGUUCUGACGCUGAGGCGCGAAAGCGUGGGGAGCAAACAGGAUUAGAUACCCUGGUAGUCCACGCCGUAAACGAUGAAUGCCAGCCGUUGGCCUGCUUGCAGGUCAGUGGCGCCGCUAACGCAUUAAGCAUUCCGCCUGGGGAGUACGGUCGCAAGAUUAAAACUCAAAGGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGAAGCAACGCGCAGAACCUUACCAUCCCUUGACAUGGCAUGUUACCUCGAGAGAUCGGGGAUCCUCUUCGGAGGCGUGCACACAGGUGCUGCAUGGCUGUCGUCAGCUCGUGUCGUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCACGUCCUUAGUUGCCAUCAUUCAGUUGGGCACUCUAGGGAGACUGCCGGUGAUAAGCCGCGAGGAAGGUGUGGAUGACGUCAAGUCCUCAUGGCCCUUACGGGAUGGGCUACACACGUGCUACAAUGGCGGUGACAGUGGGACGCGAAACCGCGAGGUUGAGCAAAUCCCCAAAAGCCGUCUCAGUUCGGAUUGCACUCUGCAACUCGGGUGCAUGAAGGCGGAAUCGCUAGUAAUCGUGGAUCAGCACGCCACGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACACCAUGGGAGUUGGUCUUACCCGACGGCGCUGCGCCAACCGCAAGGGGGCAGGCGACCACGGUAGGGUCAGCGACUGGGGUG1 4 | -------------------------------------------------------------------------------- /data/16S-25/k5group3/16S_rRNA_database_Alphaproteobacteria-AY500256.seq: -------------------------------------------------------------------------------- 1 | ; 2 | AY500256.seq 3 | GAUCUUGGCUCAGAACGAACGCUGGCGGCAGGCUUAACACAUGCAAGUCGAGCGCCCCGCAAGGGGAGCGGCAGACGGGUGAGUAACGCGUGGGAAUCUACCCAUCUCUACGGAACAACUCCGGGAAACUGGAGCUAAUACCGUAUACGUCCUUUUGGAGAAAGAUUUAUCGGAGAUGGAUGAGCCCGCGUUGGAUUAGCUAGUUGGUGGGGUAAUGGCCUACCAAGGCGACGAUCCAUAGCUGGUCUGAGAGGAUGAUCAGCCACAUUGGGACUGAGACACGGCCCAAACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGGACAAUGGGCGCAAGCCUGAUCCAGCCAUGCCGCGUGAGUGAUGAAGGCCCUAGGGUUGUAAAGCUCUUUCAACGGUGAAGAUAAUGACGGUAACCGUAGAAGAAGCCCCGGCUAACUUCGUGCCAGCAGCCGCGGUAAUACGAAGGGGGCUAGCGUUGUUCGGAAUUACUGGGCGUAAAGCGCACGUAGGCGGAUAUUUAAGUCAGGGGUGAAAUCCCGGGGCUCAACCCCGGAACUGCCUUUGAUACUGGGUAUCUCGAGUCCGAGAGAGGUGAGUGGAAUUCCGAGUGUAGAGGUGAAAUUCGUAGAUAUUCGGAGGAACACCAGUGGCGAAGGCGGCUCACUGGCUCGGUACUGACGCUGAGGUGCGAAAGCGUGGGGAGCAAACAGGAUUAGAUACCCUGGUAGUCCACGCCGUAAACGAUGGAAGCUAGCCGUUGGCAAGUUUACUUGUCGGUGGCGCAGCUAACGCAUUAAGCUUCCCGCCUGGGGAGUACGGUCGCAAGAUUAAAACUCAAAGGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGAAGCAACGCGCAGAACCUUACCAGCCCUUGACAUCCCGGUCGCGGUCUCCAGAGAUGGAGACCUUCAGUUCGGCUGGACCGGUGACAGGUGCUGCAUGGCUGUCGUCAGCUCGUGUCGUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCUCGCCCUUAGUUGCCAGCAUUCAGUUGGGCACUCUAAGGGGACUGCCGGUGAUAAGCCGAGAGGAAGGUGGGGAUGACGUCAAGUCCUCAUGGCCCUUACGGGCUGGGCUACACACGUGCUACAAUGGUGGUGACAGUGGGCAGCGAGACCGCGAGGUCGAGCUAAUCUCCAAAAGCCAUCUCAGUUCGGAUUGCACUGCUGCAACUCGAGUGCAUGAAGUUGGAAUCGCUAGUAAUCGCGGAUCAGCAUGCCGCGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACACCAUGGGAGUUGGUUUUACCCGAAGGCGCUGUGCUAACCGCAAGGAGGCAGGCGACCACGGUAGGGUCAGCGACUGGGGUGAAGUCG1 4 | -------------------------------------------------------------------------------- /data/16S-25/k5group4/16S_rRNA_database_Alphaproteobacteria-AB230988.seq: -------------------------------------------------------------------------------- 1 | ; 2 | AB230988.seq 3 | AGCGAACGCUGGCGGCAUGCUUAACACAUGCAAGUCGCACGGACCCUUCGGGGUGAGUGGCGGACGGGUGAGUAUCGCGUAGGGAUCUAUCCAUGGGUGGGGGAUAACAUCGGGAAACUGGUGCUAAUACCGCAUGAUACCUGAGGGUCAAAGGCGCAAGUCGCCUGUGGAGGAGCCUGCGUUCGAUUAGCUUGUUGGUGGGGUAAAGGCCUACCAAGGCGAUGAUCGAUAGCUGGUCUGAGAGGAUGAUCAGCCACACUGGGACUGAGACACGGCCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGGACAAUGGGCGAAAGCCUGAUCCAGCAAUGCCGCGUGUGUGAAGAAGGUCUUCGGAUUGUAAAGCACUUUCGACGGGGACGAUGAUGACGGUACCCGUAGAAGAAGCCCCGGCUAACUUCGUGCCAGCAGCCGCGGUAAUACGAAGGGGGCUAGCGUUGCUCGGAAUGACUGGGCGUAAAGGGCGCGUAGGCGGUUUACACAGUCAGAUGUGAAAUUCCAGGGCUUAACCUUGGGGCUGCAUUUGAUACGUGUAGACUAGAGUGUGAGAGAGGGUUGUGGAAUUCCCAGUGUAGAGGUGAAAUUCGUAGAUAUUGGGAAGAACACCGGUGGCGAAGGCGGCAACCUGGCUCAUUACUGACGCUGAGGCGCGAAAGCGUGGGGAGCAAACAGGAUUAGAUACCCUGGUAGUCCACGCUGUAAACGAUGUGUGCUGGAUGUUGGGUAACUUAGUUGCUCAGUGUCGAAGCUAACGCGCUAAGCACACCGCCUGGGGAGUACGGCCGCAAGGUUGAAACUCAAAGGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGAAGCAACGCGCAGAACCUUACCAGGGCUUGACAUGGGGAGGUUGUAUCCAGAGAUGGGUAUUUCCCGCAAGGGACCUCCUGCACAGGUGCUGCAUGGCUGUCGUCAGCUCGUGUCGUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCUCGCCUUUAGUUGCCAGCACGUUUGGGUGGGCACUCUAGAGGAACUGCCGGUGACAAGCCGGAGGAAGGUGGGGAUGACGUCAAGUCCUCAUGGCCCUUAUGUCCUGGGCUACACACGUGCUACAAUGGCGGUGACAGUGGGAAGCUAGAUGGUGACAUCGUGCCGAUCUCUAAAAGCCGUCUCAGUUCGGAUUGUACUCUGCAACUCGAGUGCAUGAAGGUGGAAUCGCUAGUAAUCGCGGAUCAGCAUGCCGCGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACACCAUGGGAGUUGGUUUGACCCGAAGCCGGUGAGCGAACCGCAAGGACGCAGCCGACCACGGUCGGGUCAGCGACUGGGGUG1 4 | -------------------------------------------------------------------------------- /data/16S-25/k5group4/16S_rRNA_database_Alphaproteobacteria-AF526933.seq: -------------------------------------------------------------------------------- 1 | ; 2 | AF526933.seq 3 | CCCUUGUUUGAUCCUGGCUCAGAACGAACGCUGGCGGCAGGCUUAACACAUGCAAGUCGAGCGCCUCGCAAGAGAGCGGCAGACGGGUGAGUAACGCGUGGGAAUCUACCCAUCUCUACGGAACAACUCCGGGAAACUGGAGCUAAUACCGUAUACGUCCUUCGGGAGAAAGAUUUAUCGGAGAUGGAUGAGCCCGCGUUGGAUUAGCUAGUUGGUGGGGUAAUGGCCUACCAAGGCGACGAUCCAUAGCUGGUCUGAGAGGAUGAUCAGCCACACUGGGACUGAGACACGGCCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGGACAAUGGGCGAAAGCCUGAUCCAGCCAUGCCGCGUGAGUGAUGAAGGCCCUAGGGUUGUAAAGCUCUUUCAACGGUGAAGAUAAUGACGGUAACCGUAGAAGAAGCCCCGGCUAACUUCGUGCCAGCAGCCGCGGUAAUACGAAGGGGGCUAGCGUUGUUCGGAAUUACUGGGCGUAAAGCGCACGUAGGCGGAUUGUUAAGUUAGGUGUGAAAUCCCAGGGCUCAACCCUGGAACUGCCUUUAAUACUGGCAAUCUCGAGUCCGAGAGGGUGAGUGGAAUUCCGAGUGUAGAGGUGAAAUUCGUAGAUAUUCGGAGGAACACCAGUGGCGAAGGCGGCUCACUGGCUCGGUACUGACGCUGAGGUGCGAAAGCGUGGGGAGCAAACAGGAUUAGAUACCCUGGUAGUCCACGCCGUAAACUAUGAGAGCUAGCCGUCGGCAAGUUUACUUGUCGGUGGCGCACUAACGCAUUAAGCUCUCCGCCUGGGGAGUACGGUCGCAAGAUUAAAACUCAAAGGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGAAGCAACGCGCAGAACCUUACCAGCCCUUGACAUCCCGGUCGCGGUUUCCAGAGAUGGAUUCCUUCAGUUCGGCUGGACCGGUGAGAGGUGCUGCAUGGCUGUCGUCAGCUCGUGUCGUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCUCGCCCUUAGUUGCCAGCAUUAAGUUGGGCACUCUAAGGGGACUGCCGGUGAUAAGCCGAGAGGAAGGUGGGGAUGACGUCAAGUCCUCAUGCCUUACGGGCUGGGCUACACACGUGCUACAAUGGUGGUGACAGUGGGCAGCGAGACCGCGAGGUCGAGCUAAUCUCGAAAAGCCAUCUCAGUUCGGAUUGCACUCUGCAACUCGAGUGCAUGAAGUUGGAAUCGCUAGUAAUCGCGGAUCAGCAUGCCGCGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACACCAUGGGAGUUGGUUUUACCCGAAGGCGCUGUGCUAACCGCAAGGAGGCAGGCGACAACGGUAGGGUCAGC1 4 | -------------------------------------------------------------------------------- /data/16S-25/k5group4/16S_rRNA_database_Alphaproteobacteria-AY697886.seq: -------------------------------------------------------------------------------- 1 | ; 2 | AY697886.seq 3 | GAGUUUGAUCCUGGCUCAGAACGAACGCUGGCGGCAGGCCUAACACAUGCAAGUCGAGCGCUACCUUCGGGUGGAGCGGCGGACGGGUUAGUAACGCGUGGGAAUAUACCCUUCACUAUGGAAUAGCCUCGGGAAACUGAGAGUAAUACCAUAUACGCCCUUCGGGGGAAGGAUUUAUCGGUGAAGGAUUAGCCCGCGUAAGAUUAGAUAGUUGGUGGGGUAAUGGCCUACCAAGUCUACGAUCUUUAGCUGGUUUUAGAGGAUGAUCAGCAACACUGGGACUGAGACACGGCCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUCUUAGACAAUGGGCGAAAGCCUGAUCUAGCCAUGCCGCGUGAGUGAUGAAGGUCUUAGGAUCGUAAAGCUCUUUCGCUAGGGAUGAUAAUGACAGUACCUAGUAAAGAAGCCCCGGCUAACUCCGUGCCAGCAGCCGCGGUAAUACGGAGGGGGCUAGCGUUGUUCGGAAUUACUGGGCGUAAAGCGUACGUAGGCGGAUCAGAAAGUAUGGGGUGAAAUCCCAGGGCUUAACCCUGGAACUGCCUCAUAAACUCCUGGUCUUGAGUUCGAGAGAGGUGAGUGGAAUUCCAAGUGUAGAGGUGAAAUUCGUAGAUAUUUGGAGGAACACCAGUGGCGAAGGCGGCUCACUGGCUCGAUACUGACGCUGAGGUACGAAAGUGUGGGGAGCAAACAGGAUUAGAUACCCUGGUAGUCCACACCGUAAACGAUGAAUGCCAGUCGUCGGGCAGUAUACUGUUCGGUGACACACCUAACGGAUUAAGCAUUCCGCCUGGGGAGUACGGUCGCAAGAUUAAAACUCAAAGGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGAAGCAACGCGCAGAACCUUACCAACCCUUGACAUCCUAUGACAACCUGAGAGAUCAGGCUUUCCUUCGGGACAUAGUGACAGGUGCUGCAUGGCUGUCGUCAGCUCGUGUCGUGAGAUGUUCGGUUAAGUCCGGCAACGAGCGCAACCCACAUCCCUAGUUGCCAGCAGUUCGGCUGGGCACUCUAUGGAAACUGCCCGUGAUAAGCGGGAGGAAGGUGUGGAUGACGUCAAGUCCUCAUGGCCCUUACGGGUUGGGCUACACACGUGCUACAAUGGCAACUACAGUGAGUUAAUCUCCAAAAGUUGUCUCAGUUCGGAUUGGGGUCUGCAACUCGACCCCAUGAAGUCGGAAUCGCUAGUAAUCGCGUAACAGCAUGACGCGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACACCAUGGGAGUUGGUUCUACCCGACGGCCGUGCGCUAACCUCUUCGGAGGAGGCAGCGGACCACGGUAGGAUCAGCGACUGGGGUGAAGUCGUAACGAGGUAGCCGU1 4 | -------------------------------------------------------------------------------- /data/16S-25/k5group5/16S_rRNA_database_Alphaproteobacteria-AJ244647.seq: -------------------------------------------------------------------------------- 1 | ; 2 | AJ244647.seq 3 | AGCGAACGCUGGCGGCAGGCCUAACACAUGCAAGUCGAACGAACUCUUCGGAGUUAGUGGCGGACGGGUGAGUAACACGUGGGAACGUGCCUUUAGGUUCGGAAUAACUCAGGGAAACUUGUGCUAAUACCGAAUGUGCCCUUCGGGGGAAAGAUUUAUCGCCUUUAGAGCGGCCCGCGUCUGAUUAGCUAGUUGGUGAGGUAAAGGCUCACCAAGGCGACGAUCAGUAGCUGGUCUGAGAGGAUGAUCAGCCACAUUGGGACUGAGACACGGCCCAAACUCCUACGGGAGGCAGCAGUGGGGAAUCUUGCGCAAUGGGCGAAAGCCUGACGCAGCCAUGCCGCGUGAAUGAUGAAGGUCUUAGGAUUGUAAAAUUCUUUCACCGGGGACGAUAAUGACGGUACCCGGAGAAGAAGCCCCGGCUAACUUCGUGCCAGCAGCCGCGGUAAUACGAAGGGGGCUAGCGUUGCUCGGAAUUACUGGGCGUAAAGGGAGCGUAGGCGGACAUUUAAGUCAGGGGUGAAAUCCCGGGGCUCAACCUCGGAAUUGCCUUUGAUACUGGGUGUCUUGAGUAUGAGAGAGGUGUGUGGAACUCCGAGUGUAGAGGUGAAAUUCGUAGAUAUUCGGAAGAACACCAGUGGCGAAGGCGACACACUGGCUCAUUACUGACGCUGAGGCUCGAAAGCGUGGGGAGCAAACAGGAUUAGAUACCCUGGUAGUCCACGCCGUAAACGAUGAUUGCUAGUUGUCGGGAUGCAUGCAUUUCGGUGACGCAGCUAACGCAUUAAGCAAUCCGCCUGGGGAGUACGGUCGCAAGAUUAAAACUCAAAGGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGAAGCAACGCGCAGAACCUUACCACCUUUUGACAUGCCUGGACCGCCACGGAGACGUGGCUUUCCCUUCGGGGACUAGGACACAGGUGCUGCAUGGCUGUCGUCAGCUCGUGUCGUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCUCGCCAUUAGUUGCCAUCAUUUAGUUGGGAACUCUAAUGGGACUGCCGGUGCUAAGCCGGAGGAAGGUGGGGAUGACGUCAAGUCCUCAUGGCCCUUACAGGGUGGGCUACACACGUGCUACAAUGGCGACUACAGAGGGUUAAUCCUUAAAAGUCGUCUCAGUUCGGAUUGUCCUCUGCAACUCGAGGGCAUGAAGUUGGAAUCGCUAGUAAUCGCGGAUCAGCAUGCCGCGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACACCAUGGGAGUUGGUUCUACCCGAAGGCGCUGCGCUGACCGCAAGGAGGCAGGCGACCACGGUAGGGUCAGCGACUGGGGUGAAGUCGUAACAAGGUAGCCGUAGGGGAACCUGC1 4 | -------------------------------------------------------------------------------- /data/16S-25/k5group5/16S_rRNA_database_Alphaproteobacteria-AY329631.seq: -------------------------------------------------------------------------------- 1 | ; 2 | AY329631.seq 3 | GCGAACGCUGGCGGCAGGCUUAACACAUGCAAGUCGAGCGGGUGUAGCAAUACAUCAGCGGCAGACGGGUGAGUAACGCGUGGGAACGUACCUUUUGGUUCGGAACAACACAGGGAAACUUGUGCUAAUACCGGAUAAGCCCUUACGGGGAAAGAUUUAUCGCCGAAAGAUCGGCCCGCGUCUGAUUAGCUAGUUGGUGAGGUAACGGCUCACCAAGGCGACGAUCAGUAGCUGGUCUGAGAGGAUGAUCAGCCACAUUGGGACUGAGACACGGCCCAAACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGGACAAUGGGGGCAACCCUGAUCCAGCCAUGCCGCGUGAGUGAUGAAGGCCCUAGGGUUGUAAAGCUCUUUUGUGCGGGAAGAUAAUGACGGUACCGCAAGAAUAAGCCCCGGCUAACUUCGUGCCAGCAGCCGCGGUAAUACGAAGGGGGCUAGCGUUGCUCGGAAUCACUGGGCGUAAAGGGUGCGUAGGCGGGUCUUUAAGUCAGGGGUGAAAUCCUGGAGCUCAACUCCAGAACUGCCUUUGAUACUGAAGAUCUUGAGUUCGGGAGAGGUGAGUGGAACUGCGAGUGUAGAGGUGAAAUUCGUAGAUAUUCGCAAGAACACCAGUGGCGAAGGCGGCUCACUGGCCCGAUACUGACGCUGAGGCACGAAAGCGUGGGGAGCAAACAGGAUUAGAUACCCUGGUAGUCCACGCCGUAAACGAUGAAUGCCAGCCGUUAGUGGGUUUACUCACUAGUGGCGCAGCUAACGCUUUAAGCAUUCCGCCUGGGGAGUACGGUCGCAAGAUUAAAACUCAAAGGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGACGCAACGCGCAGAACCUUACCAGCCCUUGACAUGUCCAGGACCGGUCGCAGAGACGUGACCUUCUCUUCGGAGCCUGGAACACAGGUGCUGCAUGGCUGUCGUCAGCUCGUGUCGUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCCCGUCCUUAGUUGCUACCAUUUAGUUGAGCACUCUAAGGAGACUGCCGGUGAUAAGCCGCGAGGAAGGUGGGGAUGACGUCAAGUCCUCAUGGCCCUUACGGGCUGGGCUACACACGUGCUACAAUGGCGGUGACAAUGGGAAGCGAAGACGCAAGUCCUAGCAAAUCUCAAAAAGCCGUCUCAGUUCGGAUUGGGCUCUGCAACUCGAGCCCAUGAAGUUGGAAUCGCUAGUAAUCGUGGAUCAGCACGCCACGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACACCAUGGGAGUUGGCUUUACCUGAAGACGGUGCGCUAACCAGCAAUGGAGGCAGCCGGCCACGGUAGGGUCAGCGACUGGGGUG1 4 | -------------------------------------------------------------------------------- /data/16S-25/k5group5/16S_rRNA_database_Alphaproteobacteria-D25306.seq: -------------------------------------------------------------------------------- 1 | ; 2 | D25306.seq 3 | AGCGAACGCUGGCGGCAGGCUUAACACAUGCAAGUCGAACGGGCUUCUUCGGAAGUCAGUGGCAGACGGGUGAGUAACACGUGGGAACGUGCCCUUCGGUUCGGAAUAACUCAGGGAAACUUGAGCUAAUACCGGAUACGCCCUUUUGGGGAAAGGUUGACUGCCGAAGGAUCGGCCCGCGUCUGAUUAGCUUGUUGGUGGGGUAACGGCCUACCAAGGCGACGAUCAGUAGCUGGUCUGAGAGGAUGAUCAGCCACACUGGGACUGAGACACGGCCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGGACAAUGGGCGCAAGCCUGAUCCAGCCAUGCCGCGUGAGUGAUGAAGGCCUUAGGGUUGUAAAGCUCUUUUGUCCGGGACGAUAAUGACGGUACCGGAAGAAUAAGCCCCGGCUAACUUCGUGCCAGCAGCCGCGGUAAUACGAAGGGGGCUAGCGUUGCUCGGAAUCACUGGGCGUAAAGGGCGCGUAGGCGGCCGAUUAAGUCGGGGGUGAAAGCCUGUGGCUCAACCACAGAAUUGCCUUCGAUACUGGUUGGCUUGAGACCGGAAGAGGACAGCGGAACUGCGAGUGUAGAGGUGAAAUUCGUAGAUAUUCGCAAGAACACCAGUGGCGAAGGCGGCUGUCUGGUCCGGUUCUGACGCUGAGGCGCGAAAGCGUGGGGAGCAAACAGGAUUAGAUACCCUGGUAGUCCACGCCGUAAACGAUGAAUGCCAGCCGUUGGCCUGCUUGCAGGUCAGUGGCGCCGCUAACGCAUUAAGCAUUCCGCCUGGGGAGUACGGUCGCAAGAUUAAAACUCAAAGGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGAAGCAACGCGCAGAACCUUACCAUCCCUUGACAUGGCAUGUUAGCUCGAGAGAUCGGGUGUCCUCUUCGGAGGCGUGCACACAGGUGCUGCAUGGCUGUCGUCAGCUCGUGUCGUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCACGUCCUUAGUUGCCAUCAUUCAGUUGGGCACUCUAGGGAGACUGCCGGUGAUAAGCCGCGAGGAAGGUGUGGAUGACGUCAAGUCCUCAUGGCCCUUACGGGAUGGGCUACACACGUGCUACAAUGGCGGUGACAGAGGGACGCGAAACCGCGAGGUUGAGCAAAUCCCCAAAAGCCGUCUCAGUUCGGAUUGCACUCUGCAACUCGGGUGCAUGAAGGCGGAAUCGCUAGUAAUCGUGGAUCAGCACGCCACGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACACCAUGGGAGUUGGUCUUACCCGACGGCGCUGCGCCAACCGCAAGGAGGCAGGCGACCACGGUAGGGUCAGCGACUGGGGUG1 4 | -------------------------------------------------------------------------------- /data/16S-25/k5group5/16S_rRNA_database_Alphaproteobacteria-DQ664249.seq: -------------------------------------------------------------------------------- 1 | ; 2 | DQ664249.seq 3 | GAACGCUGGCGGCAUGCCUAAUACAUGCAAGUCGAACGAACACUUCGGUGUUAGUGGCGCACGGGUGCGUAACGCGUGGGAAUCUGCCCUUGGGUUCGGAAUAACGUCGGGAAACUGACGCUAAUACCGGAUGAUGACGUAAGUCCAAAGAUUUAUCGCCCAGGGAUGAGCCCGCGUAGGAUUAGCUAGUUGGUGAGGUAAAGGCUCACCAAGGCGACGAUCCUUAGCUGGUCUGAGAGGAUGAUCAGCCACACUGGGACUGAGACACGGCCCAGACUCCUACGGGAGGCAGCAGUAGGGAAUAUUGGACAAUGGGCGAAAGCCUGAUCCAGCAAUGCCGCGUGAGCGAUGAAGGCCUUAGGGUUGUAAAGCUCUUUUACCCGGGAUGAUAAUGACAGUACCGGGAGAAUAAGCCCCGGCUAACUCCGUGCCAGCAGCCGCGGUAAUACGGAGGGGGCUAGCGUUGUUCGGAAUUACUGGGCGUAAAGCGCACGUAGGCGGCUAUUUAAGUCAGAGGUGAAAGCCCGGAGCUCAACUCCGGAACUGCCUUUGAGACUGGAUAGCUAGAAUCUUGGAGAGGCGGGUGGAAUUCCGAGUGUAGAGGUGAAAUUCGUAGAUAUUCGGAAGAACACCAGUGGCGAAGGCGGCCCGCUGGACAAGUAUUGACGCUGAGGUGCGAAAGCGUGGGGAGCAAACAGGAUUAGAUACCCUGGUAGUCCACGCCGUAAACGAUGAUAACUAGCUGUCCGGGUUCAUGGAAUUCGGGUGGCGCAGCUAACGCAUUAAGUUAUCCGCCUGGGGAGUACGGUCGCAAGAUUAAAACUCAAAGGAAUUGACGGGGGCCUGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGAAGCAACGCGCAGAACCUUACCAGCGUUUGACAUCCUCAUCGCGAUUUCCAGAGAUGGAUUUCUUCAGUUCGGCUGGAUGAGUGACAGGUGCUGCAUGGCUGUCGUCAGCUCGUGUCGUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCUCGCCUUUAGUUGCCAUCAUUUAGUUGGGUACUCUAAAGGAACCGCCGGUGAUAAGCCGGAGGAAGGUGGGGAUGACGUCAAGUCCUCAUGGCCCUUACGCGCUGGGCUACACACGUGCUACAAUGGCGACUACAGUGGGCAGCUAUCCCGCGAGGGUGAGCUAAUCUCCAAAAGUCGUCUCAGUUCGGAUUGCACUCUGCAACUCGAGUGCAUGAAGGCGGAAUCGCUAGUAAUCGCGGAUCAGCAUGCCGCGGUGAAUACGUUCCCAGGCCUUGUACACACCGCCCGUCACACCAUGGGAGUUGGAUUCACUCGAAGGCGUUGAGCUAACCGCAAGGAGGCAGGCGACCACAGUGGGUUUAGCGACUGGGGUGAAGUCGUAACAAGGUAGCC1 4 | -------------------------------------------------------------------------------- /data/16S-25/k5group6/16S_rRNA_database_Alphaproteobacteria-AB175645.seq: -------------------------------------------------------------------------------- 1 | ; 2 | AB175645.seq 3 | CGAACGCUGGCGGCAGGCUUAACACAUGCAAGUCGAGCGGGCCCUUCGGGGUCAGCGGCAGACGGGUGAGUAACACGUGGGAACGUGCCCUUCGGUUCGGAAUAACUCAGGGAAACUUGAGCUAAUACCGGAUACGCCCUUUUGGGGAAAGGUUUACCGCCGAAGGAUCGGCCCGCGUCUGAUUAGCUAGUUGGUGGGGUAACGGCCUACCAAGGCGACGAUCAGUAGCUGGUCUGAGAGGAUGAUCAGCCACACUGGGACUGAGACACGGCCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGGACAAUGGGCGCAAGCCUGAUCCAGCCAUGCCGCGUGAGUGAUGAAGGCCUUAGGGUUGUAAAGCUCUUUUGUCCGGGACGAUAAUGACGGUACCGGAAGAAUAAGCCCCGGCUAACUUCGUGCCAGCAGCCGCGGUAAUACGAAGGGGGCUAGCGUUGCUCGGAAUCACUGGGCGUAAAGGGCGCGUAGGCGGCCGAUUAAGUCGGGGGUGAAAGCCUGUGGCUCAACCACAGAAUUGCCUUCGAUACUGGUUGGCUUGAGACCGGAAGAGGACAGCGGAACUGCGAGUGUAGAGGUGAAAUUCGUAGAUAUUCGCAAGAACACCAGUGGCGAAGGCGGCUGUCUGGUCCGGUUCUGACGCUGAGGCGCGAAAGCGUGGGGAGCAAACAGGAUUAGAUACCCUGGUAGUCCACGCCGUAAACGAUGAAUGCCAGCCGUUGGUCUGCUUGCAGGUCAGUGGCGCCGCUAACGCAUUAAGCAUUCCGCCUGGGGAGUACGGUCGCAAGAUUAAAACUCAAAGGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGAAGCAACGCGCAGAACCUUACCAUCCCUUGACAUGGCAUGUUACCUCGAGAGAUCGGGGAUCCUCUUCGGAGGCGUGCACACAGGUGCUGCAUGGCUGUCGUCAGCUCGUGUCGUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCACGUCCUUAGUUGCCAUCAUUCAGUUGGGCACUCUAGGGAGACUGCCGGUGAUAAGCCGCGAGGAAGGUGUGGAUGACGUCAAGUCCUCAUGGCCCUUACGGGAUGGGCUACACACGUGCUACAAUGGCGGUGACAGUGGGACGCGAAACCGCGAGGUUGAGCAAAUCCCCAAAAGCCGUCUCAGUUCGGAUUGCACUCUGCAACUCGGGUGCAUGAAGGCGGAAUCGCUAGUAAUCGUGGAUCAGCAUGCCACGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACACCAUGGGAGUUGGUCUUACCCGACGGCGCUGCGCCAACCGCAAGGAGGCAGGCGACCACGGUAGGGUCAGCGACUGGGGUG1 4 | -------------------------------------------------------------------------------- /data/16S-25/k5group6/16S_rRNA_database_Alphaproteobacteria-DQ202331.seq: -------------------------------------------------------------------------------- 1 | ; 2 | DQ202331.seq 3 | CUUACCAUGCAGCUCGUAGCGGGCGUAGCAAUACGUCAGCGGCAGACGGGUGAGUAACGCGUGGGAACGUACCUUUUGGUUCGGAACAACACAGGGAAACUUGUGCUAAUACCGGAUAAGCCCUUACGGGGAAAGAUUUAUCGCCGAAAGAUCGGCCCGCGUCUGAUUAGCUAGUUGGUAGGGUAACGGCCUACCAAGGCGACGAUCAGUAGCUGGUCUGAGAGGAUGAUCAGCCACAUUGGGACUGAGACACGGCCCAAACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGGACAAUGGGGGCAACCCUGAUCCAGCCAUGCCGCGUGAGUGAUGAAGGCCCUAGGGUUGUAAAGCUCUUUUGUGCGGGAAGAUAAUGACGGUACCGCAAGAAUAAGCCCCGGCUAACUUCGUGCCAGCAGCCGCGGUAAUACGAAGGGGGCUAGCGUUGCUCGGAAUCACUGGGCGUAAAGGGUGCGUAGGCGGGUCUUUAAGUCAGGGGUGAAAUCCUGGAGCUCAACUCCAGAACUGCCUUUGAUACUGAAGAUCUUGAGUUCGGGAGAGGUGAGUGGAACUGCGAGUGUAGAGGUGAAAUUCGUAGAUAUUCGCAAGAACACCAGUGGCGAAGGCGGCUCACUGGCCCGAUACUGACGCUGAGGCACGAAAGCGUGGGGAGCAAACAGGAUUAGAUACCCUGGUAGUCCACGCCGUAAACGAUGAAUGCCAGCCGUUAGUGGGUUUACUCACUAGUGGCGCAGCUAACGCUUUAAGCAUUCCGCCUGGGGAGUACGGUCGCAAGAUUAAAACUCAAAGGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGACGCAACGCGCAGAACCUUACCAGCCCUUGACAUGUCCAGGACCGGUCGCAGAGAUGUGACCUUCUCUUCGGAGCCUGGAACACAGGUGCUGCAUGGCUGUCGUCAGCUCGUGUCGUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCCCGUCCUUAGUUGCUACCAUUUAGUUGAGCACUCUAAGGAGACUGCCGGUGAUAAGCCGCGAGGAAGGUGGGGAUGACGUCAAGUCCUCAUGGCCCUUACGGGCUGGGCUACACACGUGCUACAAUGGCGGUGACAAUGGGAUGCGAAGACGCAAGUCCUAGCAAAUCUCAAAAAGCCGUCUCAGUUCGGAUUGGGCUCUGCAACUCGAGCCCAUGAAGUUGGAAUCGCUAGUAAUCGUGGAUCAGCACGCCACGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACACCAUGGGAGUUGGUUUUACCUGAAGACGGUGCGCUAACCAGCAAUGGAGGCAGCCGGCCACGGUAGGGUCAGCGACUGGGGUGAAGUCGUAACAAGGUAGCCGUA1 4 | -------------------------------------------------------------------------------- /data/16S-25/k5group7/16S_rRNA_database_Alphaproteobacteria-AB110708.seq: -------------------------------------------------------------------------------- 1 | ; 2 | AB110708.seq 3 | UCAGAGCGAACGCUGGCGGCAUGCUUAACACAUGCAAGUCGCACGAGGGUUUCGGCCCUAGUGGCGGACGGGUGAGUAGCGCGUAGGGAUCUAUCCAUGGGUGGGGGAUAACACUGGGAAACUGGUGCUAAUACCGCAUGAUGCCUGAGGGCCAAAGGCGCAAGUCGCCUGUGGAGGAGCCUGCGUUCGAUUAGCUUGUUGGUGGGGUAAAGGCCUACCAAGGCGAUGAUCGAUAGCUGGUCUGAGAGGAUGAUCAGCCACACUGGGACUGAGACACGGCCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGGACAAUGGGGGCAACCCUGAUCCAGCAAUGCCGCGUGUGUGAAGAAGGUCUUCGGAUUGUAAAGCACUUUCGACGGGGACGAUGAUGACGGUACCCGUAGAAGAAGCCCCGGCUAACUUCGUGCCAGCAGCCGCGGUAAUACGAAGGGGGCUAGCGUUGCUCGGAAUGACUGGGCGUAAAGGGCGCGUAGGCGGUUGACACAGUCAGAUGUGAAAUUCCAGGGCUUAACCUUGGGGCUGCAUUUGAGACGUGUUGACUGGAGUUCGAGAGAGGGUUGUGGAAUUCCCAGUGUAGAGGUGAAAUUCGUAGAUAUUGGGAAGAACACCGGUGGCGAAGGCGGCAACCUGGCUCGAUACUGACGCUGAGGCGCGAAAGCGUGGGGAGCAAACAGGAUUAGAUACCCUGGUAGUCCACGCUGUAAACGAUGUGUGCUGGAUGUUGGGUGACUUUGUCAUUCAGUGUCGAAGCUAACGCGCUAAGCACACCGCCUGGGGAGUACGGCCGCAAGGUUGAAACUCAAAGGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGAAGCAACGCGCAGAACCUUACCAGGGCUUGACAUGGGGAGGCUGUGUCCAGAGAUGGGCAUUUCCCGCAAGGGACCUCCUGCACAGGUGCUGCAUGGCUGUCGUCAGCUCGUGUCGUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCUUGCCUUUAGUUGCCAGCAUGAUCGGGUGGGCACUCUAGAGGAACUGCCGGUGACAAGCCGGAGGAAGGUGGGGAUGACGUCAAGUCCUCAUGGCCCUUAUGUCCUGGGCUACACACGUGCUACAAUGGCGGUGACAGUGGGAAGCCAGGCAGUGAUGCUGAGCUGAUCUCAAAAAGCCGUCUCAGUUCGGAUUGCACUCUGCAACUCGGGUGCAUGAAGGUGGAAUCGCUAGUAAUCGCGGAUCAGCAUGCCGCGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACACCAUGGGAGUUGGUUUGACCUUAAGCCGGUGAGCGAACCGCAAGGACGCAGCCGACCACGGUCAGGUCAGCGACU1 4 | -------------------------------------------------------------------------------- /data/16S-25/k5group7/16S_rRNA_database_Alphaproteobacteria-AF485365.seq: -------------------------------------------------------------------------------- 1 | ; 2 | AF485365.seq 3 | GCGGCAGGCUUAACACAUGCAAGUCGAGCGGGCGUAGCAAUACGUCAGCGGCAGACGGGUGAGUAACGCGUGGGAACGUACCUUUUGGUUCGGAACAACACAGGGAAACUUGUGCUAAUACCGGAUAAGCCCUUACGGGGAAAGAUUUAUCGCCGAAAGAUCGGCCCGCGUCUGAUUAGCUAGUUGGUGAGGUAAUGGCUCACCAAGGCGACGAUCAGUAGCUGGUCUGAGAGGAUGAUCAGCCACAUUGGGACUGAGACACGGCCCAAACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGGACAAUGGGGGCAACCCUGAUCCAGCCAUGCCGCGUGAGUGAUGAAGGCCCUAGGGUUGUAAAGCUCUUUUGUGCGGGAAGAUAAUGACGGUACCGCAAGAAUAAGCCCCGGCUAACUUCGUGCCAGCAGCCGCGGUAAUACGAAGGGGGCUAGCGUUGCUCGGAAUCACUGGGCGUAAAGGGUGCGUAGGCGGGUCUUUAAGUCAGGGGUGAAAUCCUGGAGCUCAACUCCAGAACUGCCUUUGAUACUGAAGAUCUUGAGUCCGGGAGAGGUGAGUGGAACUGCGAGUGUAGAGGUGAAAUUCGUAGAUAUUCGCAAGAACACCAGUGGCGAAGGCGGCUCACUGGCCCGGUACUGACGCUGAGGCACGAAAGCGUGGGGAGCAAACAGGAUUAGAUACCCUGGUAGUCCACGCCGUAAACGAUGAAUGCCAGCCGUUAGUGGGUUUACUCACUAGUGGCGCAGCUAACGCUUUAAGCAUUCCGCCUGGGGAGUACGGUCGCAAGAUUAAAACUCAAAGGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGACGCAACGCGCAGAACCUUACCAGCCCUUGACAUGUCCAGGACCGGUCGCAGAGAUGUGACCCUCUCUUCGGAGCCUGGAGCACAGGUGCUGCAUGGCUGUCGUCAGCUCGUGUCGUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCCCGUCCUUAGUUGCUACCAUUUAGUUGAGCACUCUAAGGAGACUGCCGGUGAUAAGCCGCGAGGAAGGUGGGGAUGACGUCAAGUCCUCAUGGCCCUUACGGGCUGGGCUACACACGUGCUACAAUGGCGGUGACAAUGGGAUGCUAAGGGGCGACCCUUCGCAAAUCUCAAAAAGCCGUCUCAGUUCGGAUUGGGCUCUGCAACUCGAGCCCAUGAAGUUGGAAUCGCUAGUAAUCGUGGAUCAGCACGCCACGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACACCAUGGGAGUUGGUUUUACCUGAAGACGGUGCGCUAACCCGCAAGGGAGGCAGCCGGCCACGGUAGGGUCAGCGACUGGGGUGAAGUCGUAACAAG1 4 | -------------------------------------------------------------------------------- /data/16S-25/k5group7/16S_rRNA_database_Alphaproteobacteria-AY689029.seq: -------------------------------------------------------------------------------- 1 | ; 2 | AY689029.seq 3 | CGCUGGCGGCAUGCCUAAUACAUGCAAGUCGAACGAGAUCUUCGGGUCUAGUGGCGCACGGGUGCGUAACGCGUGGGAAUCUGCCCUUGGGUUCGGAAUAACGUCGGGAAACUGACGCUAAUACCGGAUGAUGACGAAAGUCCAAAGAUUUAUCGCCCAGGGAUGAGCCCGCGUAGGAUUAGCUAGUUGGUGAGGUAAAGGCUCACCAAGGCUACGAUCCUUAGCUGGUCUGAGAGGAUGAUCAGCCACACUGGGACUGAGACACGGCCCAGACUCCUACGGGAGGCAGCAGUAGGGAAUAUUGGACAAUGGGGGCAACCCUGAUCCAGCAAUGCCGCGUGAGUGAUGAAGGCCUUAGGGUUGUAAAGCUCUUUUACCCGAGAUGAUAAUGACAGUAUCGGGAGAAUAAGCUCCGGCUAACUCCGUGCCAGCAGCCGCGGUAAUACGGAGGGAGCUAGCGUUGUUCGGAAUUACUGGGCGUAAAGCGCACGUAGGCGGCGAUUUAAGUCAGAGGUGAAAGCCCGGGGCUCAACCCCGGAACUGCCUUUGAGACUGGAUUGCUUGAAUCCUGGAGAGGUGAGUGGAAUUCCGAGUGUAGAGGUGAAAUUCGUAGAUAUUCGGAAGAACACCAGUGGCGAAGGCGGCUCACUGGACAGGUAUUGACGCUGAGGUGCGAAAGCGUGGGGAGCAAACAGGAUUAGAUACCCUGGUAGUCCACGCCGUAAACGAUGAUAACUAGCUGCCGGGGCACAUGGUGUUUCGGUGGCGCAGCUAACGCAUUAAGUUAUCCGCCUGGGGAGUACGGUCGCAAGAUUAAAACUCAAAGGAAUUGACGGGGGCCUGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGAAGCAACGCGCAGAACCUUACCAACGUUUGACAUCCCUAUCGCGGAUCGUGGAGACACUUUCCUUCAGUUCGGCUGGAUAGGUGACAGGUGCUGCAUGGCUGUCGUCAGCUCGUGUCGUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCUCGCCUUUAGUUGCCAUCAUUUAGUUGGGUACUCUAAAGGAACCGCCGGUGAUAAGCCGGAGGAAGGUGGGGAUGACGUCAAGUCCUCAUGGCCCUUACGCGUUGGGCUACACACGUGCUACAAUGGCGACUACAGUGGGCAGCCACCUCGCGAGAGGGAGCUAAUCUCCAAAAGUCGUCUCAGUUCGGAUCGUUCUCUGCAACUCGAGAGCGUGAAGGCGGAAUCGCUAGUAAUCGCGGAUCAGCAUGCCGCGGUGAAUACGUUCCCAGGCCUUGUACACACCGCCCGUCACACCAUGGGAGUUGGAUUCACUCGAAGGCGUUGAGCUAACCGCAAGGAGGCAGGCGACCACAGUGGGUUUAGCGACUGGGGUGAAGUCGUAACAAGGUAGCCGUA1 4 | -------------------------------------------------------------------------------- /data/16S-25/k5group8/16S_rRNA_database_Alphaproteobacteria-AF510602.seq: -------------------------------------------------------------------------------- 1 | ; 2 | AF510602.seq 3 | UAACACAUGCAAGUCGAGCGGGCAUAGCAAUAUGUCAGCGGCAGACGGGUGAGUAACGCGUGGGAACGUACCUUUUGGUUCGGAACAACACAGGGAAACUUGUGCUAAUACCGGAUAAGCCCUUACGGGGAAAGAUUUAUCGCCGAAAGAUCGGCCCGCGUCUGAUUAGCUAGUUGGUGAGGUAAUGGCUCACCAAGGCGACGAUCAGUAGCUGGUCUGAGAGGAUGAUCAGCCACAUUGGGACUGAGACACGGCCCAAACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGGACAAUGGGCGCAAGCCUGAUCCAGCCAUGCCGCGUGAGUGAUGAAGGCCCUAGGGUUGUAAAGCUCUUUUGUGCGGGAAGAUAAUGACGGUACCGCAAGAAUAAGCCCCGGCUAACUUCGUGCCAGCAGCCGCGGUAAUACGAAGGGGGCUAGCGUUGCUCGGAAUCACUGGGCGUAAAGGGUGCGUAGGCGGGUCUUUAAGUCAGGGGUGAAAUCCUGGAGCUCAACUCCAGAACUGCCUUUGAUACUGAAGAUCUUGAGUUCGGGAGAGGUGAGUGGAACUGCGAGUGUAGAGGUGAAAUUCGUAGAUAUUCGCAAGAACACCAGUGGCGAAGGCGGCUCACUGGCCCGAUACUGACGCUGAGGCACGAAAGCGUGGGGAGCAAACAGGAUUAGAUACCCUGGUAGUCCACGCCGUAAACGAUGAAUGCCAGCCGUUAGUGGGUUUACUCACUAGUGGCGCAGCUAACGCUUUAAGCAUUCCGCCUGGGGAGUACGGUCGCAAGAUUAAAACUCAAAGGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGACGCAACGCGCAGAACCUUACCAGCCCUUGACAUCCCGGUCGCGGACUCCAGAGACGGAGUUCUUCAGUUCGGCUGGACCGGAGACAGGUGCUGCAUGGCUGUCGUCAGCUCGUGUCGUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCCCGUCCUUAGUUGCUACCAUUUAGUUGAGCACUCUAAGGAGACUGCCGGUGAUAAGCCGCGAGGAAGGUGGGGAUGACGUCAAGUCCUCAUGGCCCUUACGGGCUGGGCUACACACGUGCUACAAUGGCGGUGACAAUGGGAUGCUAAGGGGCGACCCUUCGCAAAUCUCAAAAAGCCGUCUCAGUUCGGAUUGGGCUCUGCAACUCGAGCCCAUGAAGUUGGAAUCGCUAGUAAUCGUGGAUCAGCACGCCACGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACACCAUGGGAGUUGGUUUUACCUGAAGACGGUGCGCUAACCCGCAAGGGAGGCAGCCGGCCACGGUAGGGUCAGCGACUGGGGUGAAGUCGUAAC1 4 | -------------------------------------------------------------------------------- /data/16S-25/k5group8/16S_rRNA_database_Alphaproteobacteria-DQ374100.seq: -------------------------------------------------------------------------------- 1 | ; 2 | DQ374100.seq 3 | UGGCUCAGAACGAACGCUGGCGGCAUGCCUAAUACAUGCAAGUCGAACGAGAUCCUUCGGGGUCUAGUGGCGCACGGGUGCGUAACGCGUGGGAAUCUGCCCUUGGGUUCGGAAUAACGUUUGGAAACGAACGCUAAUACCGGAUGAUGACGAAAGUCCAAAGAUUUAUCGCCCAGGGAUGAGCCCGCGUAGGAUUAGCUAGUUGGUAAGGUAAAGGCUUACCAAGGCGACGAUCCUUAGCUGGUCUGAGAGGAUGAUCAGCCACACUGGGACUGAGACACGGCCCAGACUCCUACGGGAGGCAGCAGUAGGGAAUAUUGGACAAUGGGGGCAACCCUGAUCCAGCAAUGCCGCGUGAGUGAUGAAGGCCUUAGGGUUGUAAAGCUCUUUUACCCGGGAUGAUAAUGACAGUACCGGGAGAAUAAGCCCCGGCUAACUCCGUGCCAGCAGCCGCGGUAAUACGGAGGGGGCUAGCGUUGUUCGGAAUUACUGGGCGUAAAGCGCACGUAGGCGGCGAUUUAAGUCAGGGGUGAAAGCCCAGUGCUCAACACUGGAACUGCCCUUGAGACUGGAUUGCUUGAAUCACGGAGAGGUGGGUGGAAUUCCGAGUGUAGAGGUGAAAUUCGUAGAUAUUCGGAAGAACACCAGUGGCGAAGGCGGCCCACUGGACGUGUAUUGACGCUGAGGUGCGAAAGCGUGGGGAGCAAACAGGAUUAGAUACCCUGGUAGUCCACGCCGUAAACGAUGAUAACUAGCUGCUGGGGUGCAUGGCAUUUCAGUGGCGCAGCUAACGCAUUAAGUUAUCCGCCUGGGGAGUACGGUCGCAAGAUUAAAACUCAAAGGAAUUGACGGGGGCCUGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGAAGCAACGCGCAGAACCUUACCAACGUUUGACAUCCCUAUCGCGGAUCGUGGAGACACUUUCCUUCAGUUCGGCUGGAUAGGUGACAGGUGCUGCAUGGCUGUCGUCAGCUCGUGUCGUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCUCGACUUUAGUUGCCAUCAUUUAGUUGGGUACUCUAAAGUAACCGCCGGUGAUAAGCCGGAGGAAGGUGGGGAUGACGUCAAGUCCUCAUGGCCCUUACGCGUUGGGCUACACACGUGCUACAAUGGCGACUACAGUGGGCAGCCACUCCGCGAGGAGGAGCUAAUCUCCAAAAGUCGUCUCAGUUCGGAUCGUUCUCUGCAACUCGAGAGCGUGAAGGCGGAAUCGCUAGUAAUCGCGGAUCAGCAUGCCGCGGUGAAUACGUUCCCAGGCCUUGUACACACCGCCCGUCACACCAUGGGAGUUGGAUUCACUCGAAGGCGUUGAGCUAACCCGCAAGGGAGGCAGGCGACCACAGUGGGUUUAGCCACUGGGGUGAAGUCGU1 4 | -------------------------------------------------------------------------------- /data/16S-25/k5group9/16S_rRNA_database_Alphaproteobacteria-AY491080.seq: -------------------------------------------------------------------------------- 1 | ; 2 | AY491080.seq 3 | AGCGAACGCUGGCGGCAGGCUUAACACAUGCAAGUCGAGCGGGCGUAGCAAUACGUCAGCGGCAGACGGGUGAGUAACGCGUGGGAACGUACCUUUUGGUUCGGAACAACACAGGGAAACUUGUGCUAAUACCGGAUAAGCCCUUACGGGGAAAGAUUUAUCGCCGAAAGAUCGGCCCGCGUCUGAUUAGCUAGUUGGUGAGGUAAUGGCUCACCAAGGCGACGAUCAGUAGCUGGUCUGAGAGGAUGAUCAGCCACAUUGGGACUGAGACACGGCCCAAACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGGACAAUGGGGGCAACCCUGAUCCAGCCAUGCCGCGUGAGUGAUGAAGGCCCUAGGGUUGUAAAGCUCUUUUGUGCGGGAAGAUAAUGACGGUACCGCAAGAAUAAGCCCCGGCUAACUUCGUGCCAGCAGCCGCGGUAAUACGAAGGGGGCUAGCGUUGCUCGGAAUCACUGGGCGUAAAGGGUGCGUAGGCGGGUCUUUAAGUCAGGGGUGAAAUCCUGGAGCUCAACUCCAGAACUGCCUUUGAUACUGAAGAUCUUGAGUUCGGGAGAGGUGAGUGGAACUGCGAGUGUAGAGGUGAAAUUCGUAGAUAUUCGCAAGAACACCAGUGGCGAAGGCGGCUCACUGGCCCGAUACUGACGCUGAGGCACGAAAGCGUGGGGAGCAAACAGGAUUAGAUACCCUGGUAGUCCACGCCGUAAACGAUGAAUGCCAGCCGUUAGUGGGUUUACUCACUAGUGGCGCAGCUAACGCUUUAAGCAUUCCGCCUGGGGAGUACGGUCGCAAGAUUAAAACUCAAAGGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGACGCAACGCGCAGAACCUUACCAGCCCUUGACAUGUCCAGGACCGGUCGCAGAGAUGUGACCUUCUCUUCGGAGCCUGGAACACAGGUGCUGCAUGGCUGUCGUCAGCUCGUGUCGUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCCCGUCCUUAGUUGCUACCAUUUAGUUGAGCACUCUAAGGAGACUGCCGGUGAUAAGCCGCGAGGAAGGUGGGGAUGACGUCAAGUCCUCAUGGCCCUUACGGGCUGGGCUACACACGUGCUACAAUGGCGGUGACAAUGGGACGCUAAGGGGCAACCCUUCGCAAAUCUCAAAAAGCCGUCUCAGUUCGGAUUGGGCUCUGCAACUCGAGCCCAUGAAGUUGGAAUCGCUAGUAAUCGUGGAUCAGCACGCCACGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACACCAUGGGAGUUGGUUUUACCUGAAGACGGUGCGCUAACCCGCAAGGGAGGCAGCCGGCCACGGUAGGGUCAGCGACUGGGGUGAAGUCGUAACAA1 4 | -------------------------------------------------------------------------------- /data/16S-25/k5group9/16S_rRNA_database_Alphaproteobacteria-DQ664243.seq: -------------------------------------------------------------------------------- 1 | ; 2 | DQ664243.seq 3 | UGGCUCAGAACGAACGCUGGCGGCAUGCUUAACACAUGCAAGUCGAACGAGACCUUCGGGUCUAGUGGCGCACGGGUGCGUAACGCGUGGGAAUCUACCCUUUGCUACGGAAUAACUCAGAGAAAUUUGUGCUAAUACCGUAUGAUGUCGUAAGACCAAAGAUUUAUCGGCAAAGGACGAGCCCGCGUAGGAUUAGCUAGUUGGUGUGGUAAAGGCGCACCAAGGCGACGAUCCUUAGCUGGUCUGAGAGGAUGAUCAGCCACACUGGGACUGAGACACGGCCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGGACAAUGGGCGAAAGCCUGAUCCAGCAAUGCCGCGUGAGUGAUGAAGGCCUUAGGGUUGUAAAGCUCUUUUACCAGGGAUGAUAAUGACAGUACCUGGAGAAUAAGCUCCGGCUAACUCCGUGCCAGCAGCCGCGGUAAUACGGAGGGAGCUAGCGUUGUUCGGAAUUACUGGGCGUAAAGCGUACGUAGGCGGUUAUUCAAGUCAGGGGUGAAAGCCUGGAGCUCAACUCCAGAACUGCCCUUGAAACUAGAUAACUAGAAUCUUGGAGAGGUGAGUGGAAUUCCGAGUGUAGAGGUGAAAUUCGUAGAUAUUCGGAAGAACACCAGUGGCGAAGGCGACUCACUGGACAAGUAUUGACGCUGAGGUACGAAAGCGUGGGGAGCAAACAGGAUUAGAUACCCUGGUAGUCCACGCCGUAAACGAUGAUAACUAGCUGUUCGGGCUCUACGAGCUUGAGUGGCGCAGCUAACGCAUUAAGUUAUCCGCCUGGGGAGUACGGUCGCAAGAUUAAAACUCAAAGGAAUUGACGGGGGCCUGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGAAGCAACGCGCAGAACCUUACCAGCGUUUGACAUCCUAAUCGCGGAUUCCAGAGAUGGAUUCCUUCAGUUCGGCUGGAUUAGUGACAGGUGCUGCAUGGCUGUCGUCAGCUCGUGUCGUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCUCGUCCUUAGUUGCCAUCAUUCAGUUGGGCACUCUAAGGAAACUGCCGGUGAUAAGCCGGAGGAAGGUGGGGAUGACGUCAAGUCCUCAUGGCCCUUACACGCUGGGCUACACACGUGCUACAAUGGCGGUGACAGUGGGCAGCAACCGGGCGACCGGUAGCUAAUCUCCAAAAACCGUCUCAGUUCGGAUUGUUCUCUGCAACUCGAGAGCAUGAAGGCGGAAUCGCUAGUAAUCGCGGAUCAGCAUGCCGCGGUGAAUACGUUCCCAGGCCUUGUACACACCGCCCGUCACACCAUGGGAGUUGGAUUCACCCGAAGGCGUUGCGCUAACCUAGCAAUAGGAGGCAGGCGACCACGGUGGGUUUAGCGACUGGGGUGAAGUC1 4 | -------------------------------------------------------------------------------- /data/23S-5/.DS_Store: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/LinearFold/LinearTurboFold/445808976857df01c57e5d9302a0bbee10515bb5/data/23S-5/.DS_Store -------------------------------------------------------------------------------- /data/HIV-5/.DS_Store: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/LinearFold/LinearTurboFold/445808976857df01c57e5d9302a0bbee10515bb5/data/HIV-5/.DS_Store -------------------------------------------------------------------------------- /data/RNaseP-20/.DS_Store: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/LinearFold/LinearTurboFold/445808976857df01c57e5d9302a0bbee10515bb5/data/RNaseP-20/.DS_Store -------------------------------------------------------------------------------- /data/RNaseP-20/k5group35/RNaseP_database_a_bacterial-C.trachomatis.seq: -------------------------------------------------------------------------------- 1 | ; 2 | C.trachomatis.seq 3 | UCGGAAGAGUAAGGCAACCGCUGAAACCAGCUUUUUAAAAAAGAUGAGUACCAGAGGAAAGUCCGGACUUUAUAAGAAAAGAUGCUGGAGAAAUUCCAGGGGCCGUAAGGCUACGGAAAGUGCAACAGAAAACACUCCGCUAUAAAUUGUAUAAUUUAUAGACAGGCUGAAAAAUCUUACUUUAGGAGUAAGAGCUGCUAGGGAGACCUAGCAGACUUGUAAACCCCAUCUGAAGCAAGAGAAAAAGUUAUUUGUUUCUGCAAACAACCUUUCUAACGAAAGGCACAGGCUUUUUCAUAAUCGCUUGAGGAGUACAGUAAUGUGCUCCCUAGAUGAAUGGUUGCCCGCAAGCAAGAACUUCCGUUCGUGCUUGUCGACAGAAUCCGGCUUACUCGCUCUUCCGAGCUU1 4 | -------------------------------------------------------------------------------- /data/RNaseP-20/k5group35/RNaseP_database_a_bacterial-M.tuberculosis.seq: -------------------------------------------------------------------------------- 1 | ; 2 | M.tuberculosis.seq 3 | CGGAUGAGUUGGCUGGGCGGCCGCGGCUCGCGUAGGGCUUGUGUGGAUUCACGAGGUUCAGCGUCGAGUCGAGGAAAGUCCGGACUUCACAGAGCAGGGUGAUUGCUAACGGCAAUCCGAGGUGACUCGCGGGAAAGUGCCACAGAAAACAGACCGCCAUCCUCGUGGUGGCAAGGGUGAAACGGUGCGGUAAGAGCGCACCAGCAUUCCGGGUGACCGGGGUGGCUAGGCAAACCCCACCCGAAGCAAGGCCAAGAAGGCCGCACCGAAAGUGCGGCCGCGCAGGCGCUUGAGGGUUGCUCGCCCGAGCCUGCGGGUAGGCCGCUCGAGGCACCCGGUAACGGUGUGUCCAGAUGGAUGGUCGCCGCCGUGCCGCCGUUAGCUUGGCUGGUGGCGGCGCGGAACAGAAUCCGGCUUACAGGCCAACUCGUCCG1 4 | -------------------------------------------------------------------------------- /data/RNaseP-20/k5group35/RNaseP_database_a_bacterial-SM-A06.seq: -------------------------------------------------------------------------------- 1 | ; 2 | SM-A06.seq 3 | GAGGAAAGUCCGGGCUCCUCAGGACAGGAUGGUCGAUAACGUCGACCGGCCGCGAGGUCAGGGAAAGUGCAACAGAAAGCAGACCGCCGAACGGUCCUUCGGGACGCGUGGCAAGGGUGAAACGGUGCGGCAAGAGCGCACCAGCGGUCGAGGUGACUCGAUCGGCUUUGUAAACCCCAUCCGGAGCUAGACCAAACAGGUUGCAGUCGUCGAGUUCGCUCGACGCGCGAAGUCGUCCGCUUCGUUAUCGACAUCCGGGUAGGUCGCGAUUGAGGCGACGAGCAAUCGUCGUGCACAGAUAGAUGGUCGUCGACGCCCCAGCGGCGUUACAGAACCCGGCUUA1 4 | -------------------------------------------------------------------------------- /data/RNaseP-20/k5group35/RNaseP_database_a_bacterial-T.maritima-g.seq: -------------------------------------------------------------------------------- 1 | ; 2 | T.maritima-g.seq 3 | GGAGAGGAGCAGGCGGUCGCGGGGGCGCACACCUGCGCUUCCCGAGGAAAGUCCGGACUCUGGAGCGGGGUGCCGGGUAACGCCCGGGAGGGGUGACCCUCGGACAGGGCCAUAGAGAAGAAGACCGCCCGUUGAGGGCAAGGGUGGAACGGUGGGGUAAGAGCCCACCAGCGUCGGGGCAACCCGGCGGCUUGGCAACCCCCACCUGGAGCAAGGCCAAGCAGGGGGUUGGGUCGCUCCCCCUAUUCCCCCGGGUUGGCCGCUUGAGGUGUGCGGUAACGCACACCCCAGAUUGAUGACCGCCCACGACAGAAUCCGGCUUAUGCUCCUCUCCCGUG1 4 | -------------------------------------------------------------------------------- /data/RNaseP-20/k5group35/RNaseP_database_a_bacterial-V.spinosum.seq: -------------------------------------------------------------------------------- 1 | ; 2 | V.spinosum.seq 3 | GAGGAAAGUCCGGGCACCUCAGGGCAGUGUGCCGUGUGAAAACGCGGGGGCUGGCGGCGUAAGCUUCCGGUCACGGAAAGUGUCACAGAAAACAUACCGCCGCGGGCAACUGCGGUAAGGGUGAAAAGGCGAGGUAAGAGCUCACCGCUCCGACUGAAAGGAAGGAGGCAGGACAAACCCCACACGGUGCAAGACAGAACAGGGGAAACGGCCCGCCCUGGCCGCACUGACUCCGCAAGGAGUUGGGAUAACCCCGGGUAUUAGUCGCACCUCGCGCAAAGCGGGGAGCACGGGGCGCAAGCCCCGGGCUAGAGAAAUGACCGCCACCUUUUGCGGCAACGCGGGAGGCACAGAACCCGGCUUA1 4 | -------------------------------------------------------------------------------- /data/RNaseP-20/k5group36/RNaseP_database_a_bacterial-C.difficile.seq: -------------------------------------------------------------------------------- 1 | ; 2 | C.difficile.seq 3 | AAUAUUAAGUAAGCCAGAUAAUCGCAUGUAAUCUUACAUGAGGAAAGUCGGAGCUCCAUAGAGCAGGGUGCUAGGUAACGCCUAGUGGGAGCGAUCCUAAGGAUAGUGCAACAGAAAUAAACCGCCACUAUUGUGGUAAGGAUGGAAAGGCGAGGUAAGAGCUCACCAGCAGCUAGGCGACUAGUUGGCUAUGUAAACCCCACCUGGAGCAAGACCAAGAUAGGAAUAAAGAGUGCUGCUCGUACUCUCCGGUAGGUAGGUCGCUUGAGCCUAUUGGUGACAAUAGGCCUAGAAAGAUGAUUAUCUAAUACAGAACUCCGCUUAUAGCCUUGCUUAAUUA1 4 | -------------------------------------------------------------------------------- /data/RNaseP-20/k5group36/RNaseP_database_a_bacterial-SM-A16(21).seq: -------------------------------------------------------------------------------- 1 | ; 2 | SM-A16(21).seq 3 | GAGGAAAGUCCGGGCAACAAAGAGCGCCAUACUUCCUAACGGGAAGGAGGCUGACUGGAGACGGUCAGUUUACAGAAAGUGCCACAGAAAAUAUACCGUUCCGAUAGCUAUCGGGAUAAGGGUGAAAAGGUAGGGUAAGAGCCUACCGCUCCGCCAGUGAUGUCGGGGGCAUGGUAAACCUUAUGGGUUGAAAGAUCAAAUAGGUUCCGCAUUGGAUUAAGUUCCAAGAAGAGUUGCUCGCUCUUACGCGGAAUGGGUAGAUCGAUGGAUCCUGAUUGUGAAGUCAGGGCUAGAUAAAUGGCAAGAAUCCUUUUGGUUUAUAUCAGAUGGAAACAGAACCCGGCUUAC1 4 | -------------------------------------------------------------------------------- /data/RNaseP-20/k5group36/RNaseP_database_a_bacterial-SM-A18(31).seq: -------------------------------------------------------------------------------- 1 | ; 2 | SM-A18(31).seq 3 | GAGGAAAGUCCGGGCUCCAUGGAAGCGCGGUGCCGGAUAACGUCCGGCGGGGGCGACCUCAGGGAAAGUGCCACAGAAAGCAAACCGCCCUCGAGGCCGAAAGGCUUCGCGGAGGGUAAGGGUGAAAGGGUGCGGUAAGAGCGCACCGCGUCUUUGGCAACAAAGGCGGCAAGGCAAACCCCACCGGGAGCAAGACCAAAUAGGGGCUGCACGGACGAGAGAUCGUCCAGGUCUGUUUCCAGACCCGCGGCCCGGGUUGGUUGCAAGAGGCGUCUCGCAAGAGGCGUCCCAGAUGAAUGGCCAUCACCUCGCAGCAAUGCGAGGAACAGAACCCGGCUUA1 4 | -------------------------------------------------------------------------------- /data/RNaseP-20/k5group36/RNaseP_database_a_bacterial-SM-A21(35).seq: -------------------------------------------------------------------------------- 1 | ; 2 | SM-A21(35).seq 3 | GAGGAAAGUCCGGGCAGCAUAGAGUGCCGUACUUCCUAACGGGAAGGUCCCAAUAAAACGGGAACAGAAAGUGCCACAGAAAAUAUACCGUCUCGAUCUAAUCGGGAUAAGGGUGAAAUGGUGAGGUAAGAGCUCACCGCUUCUGCAGUGAUGCAGUUGGCAGGGUAAACCUUACGGGUUGAAAGGCCAAAUAGGUCCUGUUUUCCUUCGUGGAAUUGGGUUGCUCGCUCAAUCGCAAGAGGCAGGAUGGGUAGGCUGAUCGAUCCCGGUAGCGAUACCGGGACCAGAUAAAUGAUAAGAUUCCGUUCAUUUCGGGAACAGAACCCGGCUUA1 4 | -------------------------------------------------------------------------------- /data/RNaseP-20/k5group36/RNaseP_database_a_bacterial-Y.pestis.seq: -------------------------------------------------------------------------------- 1 | ; 2 | Y.pestis.seq 3 | GGAGUUGACUAGACAGUCGCCGCUUCACUGCCGUCCCUUUCGGGGGAGACAGGUGGAGGGGAGGAAAGUCCGGGCUCCAUAGGGCAGGGUGCCAGGUAACGCCUGGGAGGCGCAAGCCUACGACAAGUGCAACAGAGAGCAAACCGCCGAUGGCCCACGCAAGUGGGAUCAGGUAAGGGUGAAAGGGUGCGGUAAGAGCGCACCGCGCGGCUGGCAACAGUUCGUGGCAUGGUAAACUCCACCCGGAGCAAGGCCAAAUAGGGGUUCGCAUGGUACGGCCCGUACUGAACCCGGGUAGGCUGCUUGAGCCAGUGAGCGAUUGCUGGCCUAGAGGAAUGACUGUCCACGACAGAACCCGGCUUACCGGUCAACUCCAC1 4 | -------------------------------------------------------------------------------- /data/RNaseP-20/k5group37/RNaseP_database_a_bacterial-A.nidulans.seq: -------------------------------------------------------------------------------- 1 | ; 2 | A.nidulans.seq 3 | GCGGGGAAAGGAGGCGAGGCAGUUGCGGCUCAGGCUUCGGUUAUGGGCUGAGGAAAGUCCGGGCUCCCAAAAGACCAGACUUGCUGGGUAACGCCCAGUGCGGGUGACCGUGAGGAGAGUGCCACAGAAACAUACCGCCGAUGGCCUGCUUGCAGGCACAGGUAAGGGUGCAAGGGUGCGGUAAGAGCGCACCAGCAACAUCGAGAGGUGUUGGCUCGGUAAACCCCGGUUGGGAGCAAGGUGGAGGGACAACGGUUGGUCUUUUACCUGUUCCGUUUAUGGACCGCUAGAGGUGGCUAGUAAUAGCCAUCCCAGAGAGAUAACAGCCCUCUGUCUUCGACAGAGAACAGAACCCGGCUUAUGUCCUGCUUUCCCUACUUUAUUU1 4 | -------------------------------------------------------------------------------- /data/RNaseP-20/k5group37/RNaseP_database_a_bacterial-Calothrix-PCC7601.seq: -------------------------------------------------------------------------------- 1 | ; 2 | Calothrix-PCC7601.seq 3 | AAGGAGAGAGUAGGCGUAGGCGGUUGCAGAUCAGUCACAAAAACUGAAUUUGAGGAAAGUCCGGGCUCCCGAAAGACCAAACUUGCUGGAUAACGUCCAGUGCGAGCGAUCGUGAGGAUAGUGCCACAGAAAGAUACCGCCAAUUAGUCAUUAGUCAUUUGUCAUUAGUCAUUUGGAAAAACACAAAGGACAAAGGACAAAGAACAAAUGACCAAAUUGGUAAGGGUGCAAAGGUGCGGUAAGAGCGCACCAGCAACGUCGAGAGGCGUUGGCUCGGUAAACCCCGGUUGGGAGCAAGGCGAAAGGAACUAUGGUUGGUCUUUUACCAGUUCCGCUAAAACAGAGCCGCUAGAGGCGUUUGGUAACAAACGUCCCAGAUAGAUAACCGCCCUCAUGUAGAGAAGUUACUUGUAACAUUUCUACAUUCGAGAACAGAACCCGGCUUACUACCAACUCUUUCCCUUUUU1 4 | -------------------------------------------------------------------------------- /data/RNaseP-20/k5group37/RNaseP_database_a_bacterial-LGB23.seq: -------------------------------------------------------------------------------- 1 | ; 2 | LGB23.seq 3 | GAGGAAAGUCCGGGCUCCAUGAAGCAAGGGUGCCGGGUAAUGCCCGGCCGGGGAAACCCGAGGGAAAGCGCCACAGAGAAGAGUCUGCCCCGAGCUUCGGGGUGAUGGUGAAACGGUGGGGUAAGAGCCCACCGCGGACCGGGCAACCGGGACGGCACGGCAAGCCCCACCCGGAGCAAUGCCGAAUAGGGGCCCCGCGCGGGCUGGUCCCGGACUACGGUCCGCGAUACCGCCGCAGGGAUGCUUCAGCCCAGGGGCCCGGGUUGGCAGCUUGAGCCCGUCGGUAACGGCGGGCCUAGAGGAAUGGUCAUCCAGGGGGCGCAAGCCCCCGGACAGAAUCCGGCUUA1 4 | -------------------------------------------------------------------------------- /data/RNaseP-20/k5group37/RNaseP_database_a_bacterial-P.gingivalis.seq: -------------------------------------------------------------------------------- 1 | ; 2 | P.gingivalis.seq 3 | CAGCAGAUCGGUCUGUCGCUCACUCUUUCGAGAGUGGGAGGAACGUCCGGGCAACGCAGAGCACCAUCCUUCCUAACAGGAAGUUACUCGUGAGGGUAAAGGAGCGUAGAAGAGAAUGACCGCCAUUUUCCAUGAGUUGUCUGUGCUUCGGUACGGACUACGUGGAGGGUAAGGGUGAGAAGGUGGGGUAAGAGCCUACCGGAUGCAGCGGUGACGCUGCAUGCCGUACGUCUGAUGGGUUGUAAGAUCAUGUAUACCGGCGCAUGUAGGGUGGCUCGCCCGAUGCCGGGGGGUAGAUCGCUGGAGCCAUGCGGUGACGCACGGCCAAGAUAAAUGACAGACGCUCUGGCUACGUGUGGCCGUGAGUACAGAACCCGGCUUACAGAUCUGCUGCUUUU1 4 | -------------------------------------------------------------------------------- /data/RNaseP-20/k5group37/RNaseP_database_a_bacterial-P.marinus-2.seq: -------------------------------------------------------------------------------- 1 | ; 2 | P.marinus-2.seq 3 | GAAAGCAGGAGAGGUGAUCGCAAUCGAGAUUUAUCGCGUUUCCGCAAUAAACUCUCGGUUGAGGAAAGUCCGGGCUCCCAGAUGGUCCAACUUGCUGGGUAACUCCCAGUGCGGGUGACCGUGAGGAUAGUGCCACAGAAACACACCGCCGAUGUCUCAUAGAGCACAGGCAAGGGUGCAAAGGUGCGGUAAGAGCGCACCAGCAGUAUCGAGAGGUACUGGCUUGGUAAACCCCGGUUGGGUGCAAGGCAAAGGUUUUAGGAUGACCAUUUUGCCUAUUUCCUAUUUAAAGCCGCUCGAGGCUGUUGGAGACAACAGUCCCAGAUAGAUGAUCACCCACUAACCAAUUUUGGAUAGUGAACAGAACCCGGCUUACUUCCUGCUUUC1 4 | -------------------------------------------------------------------------------- /data/RNaseP-20/k5group38/RNaseP_database_a_bacterial-A.eutrophus.seq: -------------------------------------------------------------------------------- 1 | ; 2 | A.eutrophus.seq 3 | AAAGCAGGCCAGGCAACCGCUGCCUGCACCGCAAGGUGCAGGGGGAGGAAAGUCCGGACUCCACAGGGCAGGGUGUUGGCUAACAGCCAUCCACGGCAACGUGCGGAAUAGGGCCACAGAGACGAGUCUUGCCGCCGGGUUCGCCCGGCGGGAAGGGUGAAACGCGGUAACCUCCACCUGGAGCAAUCCCAAAUAGGCAGGCGAUGAAGCGGCCCGCUGAGUCUGCGGGUAGGGAGCUGGAGCCGGCUGGUAACAGCCGGCCUAGAGGAAUGGUUGUCACGCACCGUUUGCCGCAAGGCGGGCGGGGCGCACAGAAUCCGGCUUAUCGGCCUGCUUUGCUU1 4 | -------------------------------------------------------------------------------- /data/RNaseP-20/k5group38/RNaseP_database_a_bacterial-A.ferrooxidans.seq: -------------------------------------------------------------------------------- 1 | ; 2 | A.ferrooxidans.seq 3 | GGAGUGGGCCAGGCGACCGCCGCGGAGCAAUCCGGGGAGGAAAGUCCGGGCUCCAUAGGGCAAGGCGCCGGUUAACGGCCGGGGGGCGUGAGCCUACGGAAAGUGCCACAGAAAAUAUACCGCCAAGCGCGUAAGCGCGGUAAGGGUGAAAAGGUGCGGUAAGAGCGCACCGCAUUUCCGGUAACGGAAAUGGCAGGGAAAACCCCGCCUGGAGCAAGACCAAAUAGGCGUGCGAUACCGUGGCCCGCGGUGCACGCGGGUAGGUUGCUGGAGCCUGUGCGUAAGUGCAGGCCUAGAGGAAUGGUCGUCCACGACAGAACCCGGCUUAUCGGCCCACUCCAAUU1 4 | -------------------------------------------------------------------------------- /data/RNaseP-20/k5group38/RNaseP_database_a_bacterial-B.burgdorferi-g.seq: -------------------------------------------------------------------------------- 1 | ; 2 | B.burgdorferi-g.seq 3 | AGCUGGCAGUCAGCCAUCGCUUAGUUUUAUAAUUAAAGCUUAAGAGGAAAGUCCGAGCUCCAAUAAGAACAUAAUGCUAGGUAAUGCCUAGGGGUUUUAAACCUAAGAAAGUGUCGCAGAAAAUUACCGCCGUAAAAGGUAAGGGUGAAAAGGUGAGGUAAGAGCUCACCGCUUAUUUAGCAAUAAAUACAGGCAAGAUAAACCUCAUUAGGAGCAAGAUCAAGUAUGUAAGCACCCUUUGUUCUUGAGGACAUGCUUACGGGUAGAUCGCACGAUUUUUUUAGCGAUAAAAAAAUAAGAGAGAUGAUGGCAUAGUACAGAACUCGGCUUAUGGGUGUCAGCUUAAUUUCAU1 4 | -------------------------------------------------------------------------------- /data/RNaseP-20/k5group38/RNaseP_database_a_bacterial-C.pneumoniae-AR39.seq: -------------------------------------------------------------------------------- 1 | ; 2 | C.pneumoniae-AR39.seq 3 | AUCGGAAGAGAAAGGCAACCGCUGUUUAUAUUUCUCAAAAAAUAUAAAGAGAGGAAAGUCUGGACUUCAUAAGAGAAGAUACUGGAGAAAUUCCAGGGGCCGUAAGGCUACGGAAAGUGCAACAGAAAACACUCCGCUAUAAAAUUUAUUUUAUAGACAGGCUGAAAAUUCCUACUUUAGGAGUAGGAGCCAUUAAGGUGACUUAAUAGGCAUGCAAACCCUAUCUGAAGCAAGAGAAAAAAGCUUUUUGUGUCUGCAAAUGUGAGAGGAAUUCCUCCCAUAGGCUUUUUCGAAAUCGCUUGAGGGAUCUAGUAAUAGCUCCCCUAGAUGAAUGGUUGCCCUUAGGAUAGUUCGCAAGAGCUAUCUUAUAGACAGAAUCCAGCUUACCCUCUCUUCCGAUAUUUUU1 4 | -------------------------------------------------------------------------------- /data/RNaseP-20/k5group38/RNaseP_database_a_bacterial-C.psittaci-R54.seq: -------------------------------------------------------------------------------- 1 | ; 2 | C.psittaci-R54.seq 3 | AACCGCUUCUUGUACCUUAACUAAGGUAGAUUAAGAGGAAAGUCUGGACUUCAUAAGAAAAGAUACUGGAGAAACUCCAGGGGCCGUAAGGCUACGGAAAGUGCAACAGAAAACAUUCCGCUAUAAAAGGGUCUUUUUAUAGACAGGCUGAAAAUUCCUAUUUUAAGAAUAGGAGCUAUUAAGGUGACUUAGUAGACAUGCAAACCCUAUCUGAAGCAAGAGAAAAAGUUUUUGUUUCUGCAUAAUGAGGGAGGGUAUCCCUCAUGAACUUUUUCAUAAUCGCUUGAGGGAUAUAGUAAUAUAUCCCCUAGAUGAAUGGUUGCCCUCAAGAUGAGUUUUCUCAUCUUGUAG1 4 | -------------------------------------------------------------------------------- /data/RNaseP-20/k5group39/RNaseP_database_a_bacterial-C.diphtheriae.seq: -------------------------------------------------------------------------------- 1 | ; 2 | C.diphtheriae.seq 3 | UGAGCCGGCUGGGCGAUCGCGACUUUGCGUACCACAUGCGAUGAACAUGGUGGCGCAAGGACGAGGAAAGUCCGGACUCCACAGAGCACGGUGAUUGUUAACAACAACCCGGGGUGACCCGCGGGCAAGUGCAACAGAAAGUAAACCGCCUAGAAUUUUUCUAGGUAAGGGUGAAACGGUGCGGUAAGAGCGCACCAGCGAGGUAGGUGACUACCUCGGCUAGGUAAACCCCACUGGGAGCAAGGCAUUAGGGCGUACCGUCGUUUCAGACGGUAUGUCUGCACGAACGCUUGAAGGCUGCUCGCCUGAGUUCGUGGGUAGCUGCUUGAGGCGGCCAGUGAUGGUUUCGUCCAGAUGGAUGAUCGCCGCUGAUCUCCGCUUGUCGGGGGUGAGUACAGAAUCCGGCUUAUAUGCUGGCUCAUUCG1 4 | -------------------------------------------------------------------------------- /data/RNaseP-20/k5group39/RNaseP_database_a_bacterial-D.desulfuricans.seq: -------------------------------------------------------------------------------- 1 | ; 2 | D.desulfuricans.seq 3 | GGAGUCGGACGGAUCGUCGCCGCGGGGGCAACUCCGGGGAGGAAAGUCCGGGCUCCAAAGGGCAGAACGCUGGAUAACAUCCAGGGAGGGCAACCUCCGGACAGCGCCACAGAAAGCAAACCGCCCGGCCUCGGCCGGGUAAGGGUGAAACGGUGGUGUAAGAGACCACCAGAUGCCGUGGUGACACGGCAUGCUCGGCAUACCCCGUUCGGAGCAAGACCAAAUAGGGAAGGCGGCCGGCCCGGCCGAAGCCUUCCGGGUAGGUUGCUUGAGGGUGUGGGCAACCGCACUCCUAGAGGAAUGACGGUCACACGCGGGCAACCGUGUGGACAGAACCCGGCUUACAGUCCGACUCCCGCA1 4 | -------------------------------------------------------------------------------- /data/RNaseP-20/k5group39/RNaseP_database_a_bacterial-LGA6.seq: -------------------------------------------------------------------------------- 1 | ; 2 | LGA6.seq 3 | GAGGAAAGUCCGGGCUCCACAGGACAGAGUGGUCGGUAACGCCGACCGGCCGAAAGGCUCGGGACAGGGCAACAGAAAGCAAACCGCCGCAUGGGACCGGGCCCCCGUCCAAGUCCAUGCGGUAAGGGUGAAACGGUGCGGUAAGAGCGCACCAGCAGCCAAGGUGACUUGACUGGCUAGGCAACCCCCACUCGGAGCAAGACCAAACAGGGAGCAGACGCGUUUUUCGAAACGCGUCGUGGGCUCGUCCGGCCCGCUAUCGACUCCCGGGUAGGUCGCUCGAACCGCCGAGCAAUCGUCGGUCUAGAUGAAUGGCCGUCACCUGAUUCACAGAACCCGGCUUA1 4 | -------------------------------------------------------------------------------- /data/RNaseP-20/k5group39/RNaseP_database_a_bacterial-S.cyanea-K168T.seq: -------------------------------------------------------------------------------- 1 | ; 2 | S.cyanea-K168T.seq 3 | GAGGAAAGUCCGGGCUCCACAGGGCAGGGUGGUUGCUAACGGCAACCCGGGGUGACCCGCGGGACAGUGCCACAGAAAACAGACCGCCCGGCCUUAACGGUCGGAUAAGGGUGAAACGGUGGUGUAAGAGACCACCAGCGCCUCGGGUGACCGGGGCGGCUCGGUAAACCCCACCCGGAGCAAGGCCAAGAGGGAGCCGCGAGGCUCCUGCGCAGGCGAUCGAGGGCGGCCCGUCCGAUGCCUGCGGGUAGGUCGCUCGAGCCUGUCGGCGACGGCAGGCCCAGAUGGAUGGUCGCCCAUCGCCCGCCGCGAGGCGGGCGUGGACAGAACCCGGCUUAG1 4 | -------------------------------------------------------------------------------- /data/RNaseP-20/k5group39/RNaseP_database_a_bacterial-S.glauca-K195.seq: -------------------------------------------------------------------------------- 1 | ; 2 | S.glauca-K195.seq 3 | GAGGAAAGUCCGGGCUCCACAGGGCAGGGUGGUUGCUAACGGCAACCCGGGGUGACCCGCGGGACAGUGCCACAGAAAACAGACCGCCCGGCCGACAGCGGCCGGGUAAGGGUGAAACGGUGGUGUAAGAGACCACCAGCGCCUCGGGUGACCGGGGCGGCUCGGUAAACCCCACCCGGAGCAAGGCCAAGAGGAAGCCCUCGGGCUUCUGCGCAGGCGUUCGAGGGCGGCCCGUCCGAUGCCUGCGGGUAGGCCGCUAGAGCCUGUCGGCGACGGCAGGCCCAGAUGGAUGGUCGCCCAUCGUCCGCCGCGAGGCGGGCGUGGAUAGAACCCGGCGUAG1 4 | -------------------------------------------------------------------------------- /data/RNaseP-20/k5group40/RNaseP_database_a_bacterial-C.pecorum-E58.seq: -------------------------------------------------------------------------------- 1 | ; 2 | C.pecorum-E58.seq 3 | UCGGAAGAGUAAGGCAACCGCUGUUUAUGCUUUUUCACAAUGAAAAAGCAUAAAGAGAGGAAAGUCUGGACUUCAUAAGAAAAGAUACUGGAGAAACUCCAGGGGCCGUGAGGCUACGGAAAGUGCAACAGAAAACAUUCCGCUAUAAAAUGAAAGUUUUAUAGACAGGCUGAAAAUUCCUACUUUAGGAGUAGGAGCUAUUAAGGUGACUUAAUAGACAUGCAAACCCUAUCUGAAGCAAGAGAAAAAAGCUUUUUUGUUUCUGCAAAAUUGAGAAGUUUUCUUCUCAUAAGUUUUUUCAUAAUCGCUCGAGGGAUUUAGAGAUAGAUCCCCUAGAUGAAUGGUUGCCCUCAGGGAGACGUUUGUCCACCCUGCAGACAGAANCCGGCUUACUCGCUC1 4 | -------------------------------------------------------------------------------- /data/RNaseP-20/k5group40/RNaseP_database_a_bacterial-LGW18.seq: -------------------------------------------------------------------------------- 1 | ; 2 | LGW18.seq 3 | GAGGAAAGUCCGGGCUCCGCAGGGCAGUGUGGUUCCUAACGGGAACCGGGAGUAAUCCCAGGGAAAGUGCCACAGAAAACAUACCGCCGCAAGGAAGGCGACUUCGUUGCGGUAAGGGUGAAAAGGUGCGGUAAGAGCGCACCGCUUCUCUGGUGACAGGGAAGGCAGGGUAAACCCCACACGGAGCAAGAUCAAAUAAGGAGGCCCCAAAGCGGCCCGCUUUGCUUCCGGAAACGGAAGCGGGCUUCCGGGUAGAUCGCCAGAGGAGCCUGGCGACAGGCUUCCCAGAGGAAUGGCCAUCCGUUCGUUAGCAACCUUACGGCUACUAAUGGAUGUACAGAACCCGGCUUA1 4 | -------------------------------------------------------------------------------- /data/RNaseP-20/k5group40/RNaseP_database_a_bacterial-PS27.seq: -------------------------------------------------------------------------------- 1 | ; 2 | PS27.seq 3 | GAGGAAAGUCCGGGCUCCACGGAACGCGGUGCCGGGUAACACCCGGCGGGGGCGACCCCAGGGACAGUGCCACAGAGAGCAGACCGCCGAUCGGCGUUUCGACGUCGAGGCAAGGGUGAAAGGGUGCGGCAAGAGCGCACCGCGCGACGGGUAACCGAAGCGGCAUGGCAAACCCCACCGGGAGCAAGACCGAAUAGGGGCGGCACGAGCCUCGUGCGCAAGCAUGGAGUUCCGGGCAGGAACCGGCCCAGCCGCCCGGGUUGGUUGCUUGAGGCGUCCGGUGACGGGCGUCCUAGAGGAAUGAUCGUCGCCGGCUUUCGGGCCGGGACAGAACCCGGCUUA1 4 | -------------------------------------------------------------------------------- /data/RNaseP-20/k5group40/RNaseP_database_a_bacterial-S.marcescens.seq: -------------------------------------------------------------------------------- 1 | ; 2 | S.marcescens.seq 3 | GGAGUUGACCAGACAGUCGCCGCUUCAUUGCCGUCCUCUUCGGGGGAGACAGAUGGAGGGGAGGAAAGUCCGGGCUCCAUAGGGCAGGGUGCCAGGUAACGCCUGGGAGGCGCAAGCCUACGACUAGUGCAACAGAGAGCAAACCGCCGAUGGCCCGCGCAAGCGGGAUCAGGUAAGGGUGAAAGGGUGCGGUAAGAGCGCACCGCGCGGCUGGUAACAGUUCGUGGCACGGUAAACUCCACCCGGAGCAAGGCCAAAUAGGGGUUCACAUGGUACGGCCCGUACUGAACCCGGGUAGGCUGCUUGAGCCAGUGAGCGAUUGCUGGCCUAGAGGAAUGACUGUCCACGACAGAACCCGGCUUAUCGGUCAACUCCCUC1 4 | -------------------------------------------------------------------------------- /data/RNaseP-20/k5group40/RNaseP_database_a_bacterial-S.viridis-K73T.seq: -------------------------------------------------------------------------------- 1 | ; 2 | S.viridis-K73T.seq 3 | GAGGAAAGUCCGGGCUCCACAGGGCAGGGUGGUUGCUAACAGCAACCCGGGGUGACCCGCGGGAAAGUGCCACAGAAAGCAGACCGCCCGGCCACCUCGGCCGGGUAAGGGUGAAAGGGUGGUGUAAGAGACCACCAGCGCCUCGGGUGACCGGGGCGGCUCGGUAAACCCCACCCGGAGCAAGGCCAGAAGGGAGCCGUUGCGGCUCCUGCGCAGGCGUUUGAGGGCGGCCCGUCCGAUGCCUGCGGGUAGGCCGCUUGAGCCUGUCGGCGACGGCAGGCCCAGAUGGAUGGUCGCCCAGCGCUGCGCCGUAAGGCGGGCGUGGACAGAAUCCGGCGUAG1 4 | -------------------------------------------------------------------------------- /data/RNaseP-20/k5group41/RNaseP_database_a_bacterial-CPA49.seq: -------------------------------------------------------------------------------- 1 | ; 2 | CPA49.seq 3 | GAGGAAAGUCCGGGCAACACAGAGCACCAUACUUCCUAACGGGAAGGCUUUCUGCUGGUGACGGCAGAAAGACAGACAGGGCCACAGAAACAAACCGCCCUUUGACUUCAAGGCUUGCCAAGAACGUCGAAAGGUAAGGGUGAAAAGGUGGGGUAAGAGCCCACCGUUCCGAUGGUGACAUCGGAAGCUAGGCAAACCUUAUGGGUUGAAAGGUCAAAUAGGCCCCGGGCAAAGAGCUGCUCGUUCGAUUUCUCCUUCGGGAGGAUUCCGGGGUGGGUAGAUCGAUGGAUCCCGAUUGCAAAGUCGGGACUAGAUAAAUGGCAAGAGCCCAUUUUCCCUCGUGGAAAAUGGGAUACAGAACCCGGCUUAU1 4 | -------------------------------------------------------------------------------- /data/RNaseP-20/k5group41/RNaseP_database_a_bacterial-CPA56.seq: -------------------------------------------------------------------------------- 1 | ; 2 | CPA56.seq 3 | GAGGAAAGUCCGGGCAACACAGAGCAUCGUACUUCCUAACGGGAAGGAUUCCGCUUUAGCGGGAGACAGAAAGUGCCACAGAAAACAAACUACUCGCGCUUAGGUGUGAGAAAAGGUGAAAAGGUGGGGUAAGAGCCCACCGGUCUUGAAAGUGAUUUCAGAUGCAUGGCAAACCUUACGAGUUGAAAGGCCAAAUAGGUCACGCUCACGAAAGUGAUUAGCUGCUCGCUGAUAGUGCAAGCUGGCGUGAUUGGGUAGGCUGCUUGAUUCUAAUGGCGACAUUAGGGCUAGAUAAAUGAUAGGCACUUCGAAAGAGGAACAGAACCCGGCUUAU1 4 | -------------------------------------------------------------------------------- /data/RNaseP-20/k5group41/RNaseP_database_a_bacterial-Nostoc-PCC6705.seq: -------------------------------------------------------------------------------- 1 | ; 2 | Nostoc-PCC6705.seq 3 | GGGGAGGAAAGUCCGGGCUCCCGAAAGACCAGACUUGCUGGAUAACGUCCAGUGCGAGCGAUCGUGAGGAUAGUGCCACAGAAAAAUACCGCCAAGAUUGGGGACUGGGGACUAGGGGUUGGGGACUGGGGAAGGAAACUUCCCAAUCCCUAAUCCCCCAUACCCAAUACCCAACUCUUGGUAAGGGUGCAAAGGUGCGGUAAGAGCGCACCAGCAGUAUCGAGAGGUACUGGCUCGGUAAACCCCGGUUGGGAGCAAGGCCGAAGGAACUAUGGUUGGUCUUUUACCAGUUCCGCUAUCAGAGAGCCGCUAGAGGCGUUUGGUAACAAACGUCCCAGAUAGAUAAUCGCCCUCGUGUAAAGCAAUUUACACAGAGAACAGAACCCGGCUUAC1 4 | -------------------------------------------------------------------------------- /data/RNaseP-20/k5group41/RNaseP_database_a_bacterial-PS26.seq: -------------------------------------------------------------------------------- 1 | ; 2 | PS26.seq 3 | GAGGAAAGUCCGGGCUCCACGGAAACGACGGUGCCGGAUAAUGUCCGGCGAGGGUGACCUUAGGGAAAGUGCCACAGAGAGCAAACCGCCGAUGGUCCUUUAAGGGACACAGGCAAGGGUGAAAGGGUGCGGUAAGAGCGCACCGCGCGACCGGUAACGGAAGCGGCAAGGCAAACCCCACCCGGAGCAAGACCGAAUAGGGACUGCGCGCCCGCAAGGGCAGGCCUGUUUCGGGCCGGCAGUCCGGGUUGGUCGCUUGAGCGCGCCCGGCAACGGGCCGCCUAGAGGAAUGGCUGCCGGUGCGGAUACGGUCGACUUGUGCGAUACCGUCCGCGCCACAGAACCCGGCUAA1 4 | -------------------------------------------------------------------------------- /data/RNaseP-20/k5group41/RNaseP_database_a_bacterial-Wolbachia-sp.seq: -------------------------------------------------------------------------------- 1 | ; 2 | Wolbachia-sp.seq 3 | UAGGUGGAAUAAGUAGCUGCUGUUGUGUGAUAAACAUAGCAGAGGAAAGUCCGGGCUCCAAGGAAAAAUAGUGACGGGUAAUGCCCGCCGGAGGUAACUCCAGUUAUAGGGCUACAGAAAAUUACCGCCUAAAAUAUUUUUAGGUAAGGGUGAAAAGGUGUGGUAAGAGCACACCAUGGCAAUGGCAACAUUGGUAGUCGAGUAACCAACACUAGGAGCAAGAUUAAAUAGAAGUAGAUUUUAUGUUUUCCUCAUAUCUACUCGGGUAAAUCGCAUGCGGUAAAUGGUAACAUUUACUCCAGAUAAAUAGCUACAUAAACAGAACUCGGCUUAUAUUUCACCUAGGCG1 4 | -------------------------------------------------------------------------------- /data/RNaseP-20/k5group42/RNaseP_database_a_bacterial-C.psittaci-2.seq: -------------------------------------------------------------------------------- 1 | ; 2 | C.psittaci-2.seq 3 | GAGGAAAGUCCGGGCUUCAUAAGAAAAGAUACUGGAGAAACUCCAGGGGCCGUAAGGCUACGGAAAGUGCAACAGAAAACAUUCCGCUAUAAAAGGGUCUUUUUAUAGACAGGCUGAAAAUUCCUAUUUUAAGAAUAGGAGCUAUUAAGGUGACUUAGUAGACGUGCAAACCCUAUCUGAAGCAAGAGAAAAAGUUUUUGUUUCUGCAUAAUGAGGAAUGGUAUUCCUCAUGAACUUUUUCAUAAUCGCUUGAGGGAUAUAGUAAUAUAUCCCCUAGAUGAAUGGUUGCCCUCAAGAUGGGUUUUCUCAUCUUGUAGACAGAACCCGGCUUA1 4 | -------------------------------------------------------------------------------- /data/RNaseP-20/k5group42/RNaseP_database_a_bacterial-LGW23.seq: -------------------------------------------------------------------------------- 1 | ; 2 | LGW23.seq 3 | GAGGAAAGUCCGGGCUCCAUAGGGCAAGGUGCCAGGUAACGCCUGGGGGGCGCGAGCCCACGGACAGUGCAACAGAAAGCAAACCGCCUAUGUCACGGCUCGUGCAAACGGGUCGCGGCAGGUAAGGGUGAAAGGGUGCGGUAAGAGCGCACCGCGCCGGUGGCAACAUUCGGCGGCACGGCAAACCCCACCUGGAGCAAGACCAAAUAGGGAAGCGCGCGGACCUUCGGGUCCGUUCCUGCUGCCCGCAGGGGCUUCCGGGUAGGUCGCUCGAGGCGCACGGCUGUCGUGCGUCCCAGAUGGAUGGUUGUCCUCGACAGAACCCGGCUUA1 4 | -------------------------------------------------------------------------------- /data/RNaseP-20/k5group42/RNaseP_database_a_bacterial-S.putrefaciens.seq: -------------------------------------------------------------------------------- 1 | ; 2 | S.putrefaciens.seq 3 | CGAGUUGGCCAGACAGUCGCCGCGUUCGCAAGAACGGGGAGGAAAGUCCGGGCUUCAAAGAGCAGGGUGCCAGGUAACGCCUGGGCGGUGUGAACCGACGACAAGUGCAACAGAGAGGAGACCGCCAUCAUAGCCUCGGCUAAGGUGGUAAGGGUGAAAGGGUGCGGUAAGAGCGCACCGUGCGGCUAGCAAUAGUCCGUAGCAAGGUAAACUCCACCCGAAGCAAGACCAAAUAGGGUUCCGUAUGGCGUGGCUCGCGUUGGAACCGGGUAGGUCGCUUGAGCCUGUGAGCGAUUGCAGGCCUAGAUGAAUGACUGUCCACGACAGGACCCGGCUUAUCGGCCAACUCAACCU1 4 | -------------------------------------------------------------------------------- /data/RNaseP-20/k5group42/RNaseP_database_a_bacterial-SM-A17(26).seq: -------------------------------------------------------------------------------- 1 | ; 2 | SM-A17(26).seq 3 | GAGGAAAGUCCGGGCUCCGCAGGGCGGGAUGCCAGGUAAUGCCUGGGAGGUGAAAACCUAUGGAAAGUGCCACAGAAAAUAUACCGCCCCGCCGCGCACGCGCGCUGGGGUAAGGGUGAAAUGGUGCGGUAAGAGCGCACCGCGCUGCUGGUAACAGCAGUGGCAGGGUAAACCCCAUCCGGAGCAAGACCAAAUAGGGAAGCAUGCGACUGGUUCGCAAUCUGUGGCCCGCAGAUGCUUCCGGGUAGGUUGCUUGAGGCAUUCGGUGACGAAUGACCCAGAUGAAUGACUAUCCGUUGUCUCCAGGCUAAUGGAGAUUCUGACAGAAUCCGGCUUAU1 4 | -------------------------------------------------------------------------------- /data/RNaseP-20/k5group42/RNaseP_database_a_bacterial-T.maritima.seq: -------------------------------------------------------------------------------- 1 | ; 2 | T.maritima.seq 3 | GGAGAGGAGCAGGCGGUCGCGGGGGCGCACACCUGCGCUUCCCGAGGAAAGUCCGGACUCUGGAGCGGGGUGCCGGGUAACGCCCGGGAGGGGUGACCCUCGGACAGGGCCAUAGAGAAGAAGACCGCCCGUUGAGGGCAAGGGUGGAACGGUGGGGUAAGAGCCCACCAGCGUCGGGGCAACCCGGCGGCUUGGCAACCCCCACCUGGAGCAAGGCCAAGCAGGGGGUUGGGUCGCUCCCCCUAUUCCCCCGGGUUGGCCGCUUGAGGUGUGCGGUAACGCACACCCCAGAUUGAUGACCGCCCACGACAGAAUCCGGCUUAUGCUCCUCUCCCGUG1 4 | -------------------------------------------------------------------------------- /data/RNaseP-20/k5group43/RNaseP_database_a_bacterial-Anabaena-ATCC29413.seq: -------------------------------------------------------------------------------- 1 | ; 2 | Anabaena-ATCC29413.seq 3 | GGGGAGGAAAGUCCGGGCUCCCGAAAGACCAGACUUGCUGGAUAACUUCCAGUGCGAGCGAUCGUGAGGAUAGUGCCACAGAAAAAUACCGCCAAAACAAUUCAAAAUUCAAAAUUCAAAAUUCAAAAUGAAUAAUUUUGGAUUUUGAGUCUUAGUUAUGAAUUCAAUUUUGGUAAGGGUGCAAAGGUGCGGUAAGAGCGCACCAGCAGUAUCGAGAGGUACUGGCUCGGUAAACCCCGGUUGGGAGCAAGGCCGAAGGAACUAUGGUUGGUCUUUUACCAGUUCCGUUAUCAGAGAGCCGCUAGAGGCGUUUGGUAACAAACGUCCCAGAUAGAUAAUCGCCCUCGUGUAAAGCAAUUUACACAGAGAACAGAACCCGGCUUAC1 4 | -------------------------------------------------------------------------------- /data/RNaseP-20/k5group43/RNaseP_database_a_bacterial-C.pneumoniae.seq: -------------------------------------------------------------------------------- 1 | ; 2 | C.pneumoniae.seq 3 | GAGGAAAGUCCGGACUUUAUAAGAAAAGAUACUGGAGAAAUUCCAGGGGCCGUAAGGCUACGGAAAGUGCAACAGAAAACACUCCGCUAUAAAAUUUAUUUUAUAGACAGGCUGAAAAUUCCUACUUUAGGAGUAGGAGCCAUUAAGGUGACUUAAUAGGCAUGCAAACCCUAUCUGAAGCAAGAGAAAAAAGCUUUUUGUGUCUGCAUAUGUGAGAGGAAUUCCUCCCAUGAACUUUUUCGAAAUCGCUUGAGGGAUCUAGUAAUAGCUCCCCUAGAUGAAUGGUUGCCCUUAGGAUAGUUCGCAAGAGCUAUCUUAUAGACAGAACCCGGCUUA1 4 | -------------------------------------------------------------------------------- /data/RNaseP-20/k5group43/RNaseP_database_a_bacterial-G.sulfurreducens.seq: -------------------------------------------------------------------------------- 1 | ; 2 | G.sulfurreducens.seq 3 | GAAGCAGAACAGAUGGCCGCCCUUCGCGUGCGGGGGGAGGAAAGUCCGGGCUCCACAGGGCAUGGUGCUGGAUAACGUCCAGCGGGGGCGACCCCAGGGAUAGUGCCACAGAGAGAAGUCCGCCCGCUCAGGCGGGUAAGGGUGAAAGGGUGAGGUAAGAGCUCACCGGGUUCGGCGGUGACGUCGGAUGCCAGGUAAACCCCACCAGGAGCAAGGCCGAAUAGGGAAGCGUCAAGGAUGGCCCGUCCGUGCUUCCGGGUUGGCUGCUUGAGGCCGUCGGUAACGGCGGUCCCAGAGGAAUGGUCAUCGCCCGCCAAGGGGUAACCCGCGGCGGGAACAGAACCCGGCUUAUGGGCUGCUUCGACCA1 4 | -------------------------------------------------------------------------------- /data/RNaseP-20/k5group43/RNaseP_database_a_bacterial-R.prowazekii.seq: -------------------------------------------------------------------------------- 1 | ; 2 | R.prowazekii.seq 3 | CUAAAUGGUCGUGCAGUUGCGUGAUGAUAAUCACGAGGAAAGUCCGGACUCUAUAGAGGUAUGGUGCCGGUUAACAUCCGGCAGAGUAUUAUUACUUUAGGGCUAGUACCACAGAAAAUAUACCGCCGAGUAUUUCGGUAAGGGUGAAAAGGUGUGGUAAGAGCACACCGGUAAGUUGGCAACAAGUUACGCAUGGUUAACCCCACCAAGAGCAAGAUCAAAUAGGCAUUACAGAAUUUAAAUAUUUAUUUAAGUUCCUGGGUUACCUCUAAUCGGAUUGUAAUGCGGGUAGAUCGCUUGAGGUAAACGGUAACGUUUAUCCUAGAUAAAUAACUGCAAUGAAUUAAUAUUCAUACAGAAUCCGGCUUAUAGACCAGAUGAGCAG1 4 | -------------------------------------------------------------------------------- /data/RNaseP-20/k5group43/RNaseP_database_a_bacterial-V.cholera.seq: -------------------------------------------------------------------------------- 1 | ; 2 | V.cholera.seq 3 | AGUUGACUGGGUAGUCGCUGCCUUAUUGACGUCCCUUGGCCUAUCGCCAGGGAGACUGAUAAGGGGGAGGAAAGUCCGGGCUCCAUAGAGCAGGGUGCCAGGUAACGCCUGGGGGGCGCAAGCCUACGACAAGUGCAACAGAGAGCAAACCGCCGAUGGCCUCUCUUCGGGAUGGGAUCAGGUAAGGGUGAAAGGGUGCGGUAAGAGCGCACCGUGCGACUGGCAACAGUUCGUAGCAGGGUAAACUCCACCCGGAGCAAGACCAAAUAGGCCUCCACAUAGCGUUGCUCGCGUUAGGAGGCGGGUAGGUUGCUUGAGCCAGUGAGUGAUUGCUGGCCUAGAGGAAUGGCUACUACCGCGCAAGCGGAACAGAACCCGGCUUAUACGUCGACUCCACCU1 4 | -------------------------------------------------------------------------------- /data/RNaseP-20/k5group44/RNaseP_database_a_bacterial-Anabaena-PCC7120.seq: -------------------------------------------------------------------------------- 1 | ; 2 | Anabaena-PCC7120.seq 3 | AGGGAGAGAGUAGGCGUUGGCGGUUGCAGACCAGUUAGCUUAACUGAUUUGAGGAAAGUCCGGACUCCCGAAAGACCAGACUUGCUGGAUAACGUCCAGUGCGAGCGAUCGUGAGGAUAGUGCCACAGAAAAAUACCGCCAAGAUUGGGGACUGGGGACUAGGGGUUGGGGACUGGGGAAGAAACUUCCCAAUCCCUAAUCCCCCAUACCCAAUACCCAACUCUUGGUAAGGGUGCAAAGGUGCGGUAAGAGCGCACCAGCAGUAUCGAGAGGUACUGGCUCGGUAAACCCCGGUUGGGAGCAAGGCCGAAGAACUAUGGUUGGUCUUUUACCAGUUCCGCUAUCAGAGAGCCGCUAGAGGCGUUUGGUAACAAACGUCCCAGAUAGAUAAUCGCCCUCGUGUAAAGCAAUUUACACAGAGAACAGAACCCGGCUUACCACCAACUCUCUCCUCUUU1 4 | -------------------------------------------------------------------------------- /data/RNaseP-20/k5group44/RNaseP_database_a_bacterial-C.trachomatis-2.seq: -------------------------------------------------------------------------------- 1 | ; 2 | C.trachomatis-2.seq 3 | UCGGAAGAGUAAGGCAACCGCUGAAACCAGCUUUUUAAAAAAGAUGAGUACCAGAGGAAAGUCCGGACUUUAUAAGAAAAGAUGCUGGAGAAAUUCCAGGGGCCGUAAGGCUACGGAAAGUGCAACAGAAAACACUCCGCUAUAAAUUGUAUAAUUUAUAGACAGGCUGAAAAAUCUUACUUUAGGAGUAAGAGCUGCUAGGGAAACCUAGCAGACUUGUAAACCCCAUCUGAAGCAAGAGAAAAAGUUAUUUGUUUCUGCAAACAACCUUUCUAACGAAAGGCACAGGCUUUUUCAUAAUCGCUUGAGGAGUACAGUAAUGUGCUCCCUAGAUGAAUGGUUGCCCGCAAGCAAGAACUUCCGUUCGUGCUUGUCGACAGAAUCCGGCUUACUCGCUCUUCCGAGCUU1 4 | -------------------------------------------------------------------------------- /data/RNaseP-20/k5group44/RNaseP_database_a_bacterial-N.meningitidis-Z2491.seq: -------------------------------------------------------------------------------- 1 | ; 2 | N.meningitidis-Z2491.seq 3 | CGGGACGGGCAGACAGUCGCCGCGUAUCGCGUAAGGCAUACGGGGAGGAAAGUCCGGGCUCCGCAGGGUAGAAUGCCGGUUAACGGCCGGGCGCGGUAACGCGACGGAAAGUGGAACAGAAAGCAAAACCGCCGAUGGCUGCUUUGGCAGCACAGGCAAGGGUGAAAAGGUGCGGUAAGGGCGCACCGCGCAUUUGGUAACAAUAUGCGGCAGGCCAAACCCCAUUCGGAGCAAGACCAAACAGAACGCAAUGACGCUGCCCGCCGAGCGUUCGGGUAGGUUGCUUGAGCAUACCGGCAACGGUAUGCCUAGAGGAAUGACUGUCCGAGACAGAACCCGGCUUACCGCCUGUCCGGUGUG1 4 | -------------------------------------------------------------------------------- /data/RNaseP-20/k5group44/RNaseP_database_a_bacterial-Synechococcus-PCC7001.seq: -------------------------------------------------------------------------------- 1 | ; 2 | Synechococcus-PCC7001.seq 3 | GGGGAGGAAAGUCCGGGCUCCCCAAUGGCCAGGCUUGCUGGGUAACGCCCAGUGCGGGUGACCGUGAGGAGAGUGCCACAGAAACACACCGCCGAUGGCUCCGCUUCCGCUGCGGUGGAGACGAGCACAGGCAAGGGUGCAAAGGUGCGGUAAGAGCGCACCAGCAGCAUCGAGAGGUGCUGGCUCGGUAAACCCCGGCCGGGAGCAAGGCCCAGGGACCAACGGUUGGCCAUGACACCGGUCCCGCCCCAAGUGCGCCGCUCGAGGCCGCCGGAGACGGCGGUCCCAGACAGAUGAUCACCCCGGGCAGGGUCCGCCCCACCCGGAACAGAACCCGGCUUA1 4 | -------------------------------------------------------------------------------- /data/RNaseP-20/k5group44/RNaseP_database_a_bacterial-Synechocystis-PCC6803.seq: -------------------------------------------------------------------------------- 1 | ; 2 | Synechocystis-PCC6803.seq 3 | GAGAGUUAGGGAGGGAGUUGCGGAUUCCUGUCACAGGGAAUCUGAGGAAAGUCCGGGCUUCCCAAAGGCCAAACUUGCUGGGUAACGCCCAGUGCGCGCGAGCGUGAGGACAGUGCCACAGAAAAAUACCGCCCUUUUUAGAAAACAGCAACCAGUAAACAGUUAACAGGGUUUUUCUGCUGACUAACUGGUAACUGACCACUGAAAAGGUAAGGGUGCAAAGGUGCGGUAAGAGCGCACCAGCAGUAUCGAGAGGUACUGGCUCGGUAAACCCCGGUUGGAAGCAAGGUCGGAGGGGCAAAGGUUGGUCUUUUUCCUGCCCCAUGAUUGGUGGAACCGCUUGAGGAAUUUGGUAACAAAUUUCCCAGAUAGAUAACUCCCCAAGGGUGCCUCGCAUCCUGGAACAGAACCCGGCUUACGACUAACUCUCUUUUUUU1 4 | -------------------------------------------------------------------------------- /data/RNaseP-20/k5group45/RNaseP_database_a_bacterial-C.felis-FP.seq: -------------------------------------------------------------------------------- 1 | ; 2 | C.felis-FP.seq 3 | UCGGAAGAGUAAGGCAACCGCUUCCUGUAUCUCUAGUAGAUAUGGUAAGAGGAAAGUCUGGACUUCAUAAGAAGAGAUACUGGAGAAACUCCAGGGGCCGUAAGGCUACGGAAAGUGCAACAGAAAACACUCCGCUAUAAUAUAGACAGGCUGAAAAUUCCUACUUUAAGAGUAGGAGCUAUUAAGGUGACUUAAUAGACGUGCAAACCCUAUCUGAAGCAAGAGAAAAAGUUUUUGUUUCUGCAUAAUGAGGAGCUCUGUUCCUCAUAAACUUUUUCACAAUCGCUUGAGGGAUAUAGUAAUAUAUCCCCUAGAUGAAUGGUUGCCCUCAAGAUGGUCUUUGCCAUCUUGUAGACAGAANCCGGCUUACUCGCUC1 4 | -------------------------------------------------------------------------------- /data/RNaseP-20/k5group45/RNaseP_database_a_bacterial-LGA1.seq: -------------------------------------------------------------------------------- 1 | ; 2 | LGA1.seq 3 | GAGGAAAGUCCGGGCAGCACAGAGCAAUGCACCGGUGAAUAGCCGGGUUCCGUCUUUGACGGAAACAGACAGUGCCACAGAAAAUAACUGCCUUCCCCUCUCCUUUAGGAGAGGGUUGAGGUAGGGUUGAAAACGUGAGGUAAGAGCUCACGUCCCGAUAUGGUGACAUAUCGGGAGGGUAAACCUUGCAUGCUGAAAUGCCACAUAGGUCAGCGCCUGAGAACUGCUCGUUCAAUGCUGAUGGGUAGGCAGAUUGAUCCCGGUUGGUAACUUCCGGGACAGAUAAAUGAUAGCCACUAAUCCACCUUGCUAAGGCUACGGUGGACAGAACCCGGCUUA1 4 | -------------------------------------------------------------------------------- /data/RNaseP-20/k5group45/RNaseP_database_a_bacterial-Nostoc-PCC7107.seq: -------------------------------------------------------------------------------- 1 | ; 2 | Nostoc-PCC7107.seq 3 | GGGGAGGAAAGUCCGGGCUCCCGAAAGACCAAACUUGCUGGAUAACGUCCAGUGCGAGCGAUCGUGAGGAUAGUGCCACAGAAAGAUACCGCCAAAACAAGUAAAAAGUAAAAAGCAAAAAAGCAAAAGAAACAAAAAUUUCUUUUUACUUUUGCCCUUUAACUUUUGCCUUUUUUUGGUAAGGGUGCAAAGGUGCGGUAAGAGCGCACCAGCAGCGUCGAGAGGCGUUGGCUCGGUAAACCCCGGUUGGGAGCAAGGCCAGAGGAACUACGGUUGGUCUUUUACCAGUUCCGCGUAUGAGAGCCGCUAGAGGCUUUUGGUAACAACCGUCCCAGAUAGAUAACUGCCAUCAUGUAAAAUUUUUACAUAGAUAACAGAACCCGGCUUAC1 4 | -------------------------------------------------------------------------------- /data/RNaseP-20/k5group45/RNaseP_database_a_bacterial-S.caesia-K182.seq: -------------------------------------------------------------------------------- 1 | ; 2 | S.caesia-K182.seq 3 | GAGGAAAGUCCGGGCUCCACAGGGCAGGGUGGUUGCUAACAGCAACCCGGGGUGACCCGCGGGACAGUGCCACAGAGAACAGACCGCCCGGCCGUCUCGGCCGGGUAAGGGUGAAACGGUGGUGUAAGAGACCACCAGCGCCUCGGGUGACCGGGGCGGCUCGGUAAACCCCACCCGGAGCAAGGCCAAGAGGGAGCCGCGAGGCUCCUGCGCAGGCGUUCGAGGGCGGCCCGUCCGAUGCCUGCGGGUAGGCCGCUGGAGCCUGUCGGCGACGGCAGGCCAAGAUGGAUGGUCGCCCAGCGUCCGCCGCGAGGCGGGCGUGGACAGAACCCGGCGUAG1 4 | -------------------------------------------------------------------------------- /data/RNaseP-20/k5group45/RNaseP_database_a_bacterial-SM-A27(43).seq: -------------------------------------------------------------------------------- 1 | ; 2 | SM-A27(43).seq 3 | GAGGAAAGUCCGGGCUCCACAGGGCAGGAUGGUCCUUAACGGGGACCGGGGGCGACCUUAGGGAUAGUGCCACAGAGAGAAGACCGCCCGCCAUCGUUUUUGCGAUGGCAGGUAAGGGUGAAAGGGUGAGGUAAGAGCUCACCAGUGUCGGCGGUGACGUCGGCAGCUAGGUAAACCCCAUCCGGAGCAAGGCCAAAUAGGGGAGUGCUUGAGGACGGCCCGUCCGAAGCUCCCGGGUCAGGCUGCUUGAGGCCGUCGGCAACGGCGGUCCUAGAGGAAUGAUCGUCACUCUGCAGGGGGUAACCGCUACAGAGGACAGAACCCGGCUUAC1 4 | -------------------------------------------------------------------------------- /data/RNaseP-20/k5group46/RNaseP_database_a_bacterial-C.acetobutylicum.seq: -------------------------------------------------------------------------------- 1 | ; 2 | C.acetobutylicum.seq 3 | CGAGUAAGCCAGACAAUCGCUGCUGCAAUUUGCAGGAGAGGAAAGUCCGAGCUCCAUAGGGCAGGGUGCCGGGUAACUCCCGGUCAAGGCGACUUGAAGGAAAGUGCAACAGAGAUAUACCGCCAUUUUAUAAUGGUAAGGGUGGAAAGGCGAGGUAAGAGCUCACCAGCGCAUUGGCGACUUUGCGGCUAUGUAAACCCCAUCUGGAGCAAGAUCAAAUAGGGAAGCGUUUUGGAGUGGCCCGCUCUGCUUCCGGGUAGCAUCGCUUGAAUCUUAUGGUAACAUAAGGUCUAGAUAGAUGAUUGUCGAAUACAGAACUCGGCUUACAGGUUUAGUCGUCCAUUG1 4 | -------------------------------------------------------------------------------- /data/RNaseP-20/k5group46/RNaseP_database_a_bacterial-C.trachomatis-L1.seq: -------------------------------------------------------------------------------- 1 | ; 2 | C.trachomatis-L1.seq 3 | UCGGAAGAGUAAGGCAACCGCUGAAACCAGCUUUUUAAAAAAGAUGAGUACCAGAGGAAAGUCCGGACUUUAUAAGAAAAGAUGCUGGAGAAAUUCCAGGGGCCGUAAGGCUACGGAAAGUGCAACAGAAAACACUCCGCUAUAAAUUGUAUAAUUUAUAGACAGGCUGAAAAAUCUUACUUUAGGAGUAAGAGCUGCUAGGGAAACCUAGCAGACUUGUAAACCCCAUCUGAAGCAAGAGAAAAAGUUAUUUGUUUCUGCAAACAACCUUUCUAACGAAAGGCACAGGCUUUUUCAUAAUCGCUUGAGGAGUACAGUAAUGUGCUCCCUAGAUGAAUGGUUGCCCGCAAGCAAGAACUUCCGUUCGUGCUUGUCGACAGAANCCGGCUUACUCGCUC1 4 | -------------------------------------------------------------------------------- /data/RNaseP-20/k5group46/RNaseP_database_a_bacterial-CPA62.seq: -------------------------------------------------------------------------------- 1 | ; 2 | CPA62.seq 3 | GAGGAAAGUCCGGGCUCCACGGAUCAACGGUGCCGGAUAACGUCCGGCGGGGGCAACCCCAGGGAAAGUGCCACAGAAAAGUAAACCGCCACGGGCGCGUUGCGUUUAGCCUGCGGCAAGGGUGAAACGGUGCGGUAAGAGCGCACCGCGUUUCCGGCAACGGAAGCGGCAGGGCAAACCCCACCGGGAGCAAAACCGAAUAGGAACGGCGCGCGUUUCCGCGCAAGCGGGAAAGCAGAUCGAUCCGGAUCAGCCGUUCGGGUAGGUCGCUUCAGGCACACAGCAAUCUGUGCCGCAGAGGAAUGGCCGUCACGUGCUGCGUUAUCGCGCAGCGCCAUACAGAACCCGGCUUAC1 4 | -------------------------------------------------------------------------------- /data/RNaseP-20/k5group46/RNaseP_database_a_bacterial-M.leprae.seq: -------------------------------------------------------------------------------- 1 | ; 2 | M.leprae.seq 3 | CGGACGAGUUGGCUGGGCGGCCGCGGCUCGUGUCGGUCUGAAAGGCCCGGUAACGAGUCGAGGAAAGUCCGGACUUCACAGAGCAGGGUGAUUGCUAACAGCAAUCCGAGGUGACUCGCGGGAUAGUGCCACAGAAAACAAACCGCCAUCCUCGCGGUGGUAAGGGUGAAACGGUGCGGUAAGAGCGCACCAGCAUCCCGGGUGACCGGGAUGGCUUGGUAAACCCCACCCGAAGCAAGGUCAAGAAGGCUGCACUACAAGUGCGGCCGCGCAGGCGUUCGAGAGCUGCUCGCCCGAGCCUGCGGGUAGGCCGCUUGAGGCACCCGGCAACGGUGUGUCCAGAUGGAUGGUCGCCGCCGCGCCACCGUAGGCAAUGCCUGCGUUGGCGGGGAACAGAAUCCGGCUUAUAGGCCAACUCGCCCG1 4 | -------------------------------------------------------------------------------- /data/RNaseP-20/k5group46/RNaseP_database_a_bacterial-Prochlorococcus-PAC1A.seq: -------------------------------------------------------------------------------- 1 | ; 2 | Prochlorococcus-PAC1A.seq 3 | GAGGAAAGUCCGGGCUCCUAUUUGGCCAGGCUUGCUGGGUAAUUCCCAGUGCGGGUGACCGUGAGGAUAGUGCCACAGAAACACACCGCCUAAUGCUUAAUGGGGAAAUCCCAACAAGCGCGGCAAGGGUGCAAAGGUGCGGUAAGAGCGCACCAGCAGCAUCGAGAGGUGCUGGCUAGGUAAACCCCGGCCAGGAGCAAGGCGAGGGGCACUGGAUGGCCAUAGACCUUGUCCCUGUAGAGAGCCGCUUGAGGCUACCGGUAACGUUAGUCCCAGAUAGAUGAUUACCCAUUCUCUUUCUAAAGAAAGAGGAAAGAACAGAACCCGGCUUAC1 4 | -------------------------------------------------------------------------------- /data/RNaseP-20/k5group47/RNaseP_database_a_bacterial-D.radiodurans-g.seq: -------------------------------------------------------------------------------- 1 | ; 2 | D.radiodurans-g.seq 3 | GCGGGGAAACUCCUGGUCGCGCCUGACCUGCUUUUUCGGCAGGGAAGGUGAGGAAAGUCCGGGCACCGCAGGGCAAGGAUGCCAGCUAACGGCUGGUCGGCGAGCCGAGCGUCCGCCUGAGUGCCGCAAGCAGGCGGAAAGCGGCGAAGUCGAAGGACAGUGCCACAGAAACCAGACCGCCACCCCACACAGGCCCCGGCGCGGGCGCGGGUGGUCAGGGUGAAACGGUGCGGUAAGAGCGCACCAGGUUCCCGGGAGACCGGGAGCGUCUGGUCAACCCCAUCCGGUGCAAGACCCGACAGUGCGGCGAGGGCGGCCCGCCCGUUUGAGCCGCCAGGAUGGUCGCUUGAGGCGUCCUGGCAACAGGCGUCCCAGACAGAUGAUCAGGCUGCCCCAGGGCCAACCCUCUGGGGCAGACAGAACCCGGCUUACCGUUUCCCCGUGCCA1 4 | -------------------------------------------------------------------------------- /data/RNaseP-20/k5group47/RNaseP_database_a_bacterial-EM14b-11.seq: -------------------------------------------------------------------------------- 1 | ; 2 | EM14b-11.seq 3 | GAGGAAAGUCCGGGCUCCAAAGGGCAGGGCGCCGGGUAAUACCCGGGGUGGGGAAACCCCACACGGUAAGGGCCACAGAAACGAGACCGCCGAAGCGGUAAGCCAGGCAAGGGUGAAAGGGUGGGGUAAGGGCCCACCGGCUCCGCGGUAACGCGGGGUGAGGGGGUAAAAAUCCCCCGGCGGGUUUUCCCGCUCUGGUAACCUCCCGCCCGGAGCAAGGCCAAGUAGCGCCGCACCCCGAAAGGGGAUAAGGUGGCCCGCCGAAAUGCGGUGCGGGUAGGCCGCAAUGGAAGUCGGGGGGCAACUCCCGACUCAAGAUAGAUGACCACCUAGUACAGAACCCGGCUUA1 4 | -------------------------------------------------------------------------------- /data/RNaseP-20/k5group47/RNaseP_database_a_bacterial-R.capsulatus.seq: -------------------------------------------------------------------------------- 1 | ; 2 | R.capsulatus.seq 3 | GCGGAAGACCGGAUGACCGCGGCGGCCCAUAGCUCCGUUUUUCGGAUAGCUGGGCCUCCGAGGAAAGUCCGGACUCCAUGAAGCAACGGUGCCGGGUAACGCCCGGCGGGGGCAACCCCAGGGAAAGCGCCACAGAGAACAGACCGCCCCGCUUGCGGGGUGAGGGUGAAACGGUGGGGUAAGAGCCCACCGCGGGACUGGCAACAGGACCGGCACGGCAAGCCCCACCGGGAGCAACGCCGAAUAGGGAUGCCGCGCCGCAACCGGAAACGGGGGACGGCAGGGGAGCUUCGCCCCGAGGUGUCCGGGUUGGCGGCUUGAGGCUGCGGGUGACCGCAGACCCAGAGGAAUGGUCAUCCAGGGGGCAACCCCGGACAAAAUCCGGCUUACAGGUCUUCCGCGCGC1 4 | -------------------------------------------------------------------------------- /data/RNaseP-20/k5group47/RNaseP_database_a_bacterial-R.rubrum.seq: -------------------------------------------------------------------------------- 1 | ; 2 | R.rubrum.seq 3 | CCAGUCGGCCGGAUGGCCGCUCUCCGUCAUCGUCCCCGGGCCACCCCCGAUGGACCGUCGGGGGGAGGAAAGUCCGGGCUCCACGGGAACACGGUGCCGGGUAACGCCCGGCGGGGGCGACCCUAGGGAAAGUGCCACAGAGAGCAAACCGCCGGCCUAUACGGCCGGUAAGGGUGAAAGGGUGCGGUAAGAGCGCACCGCCUGCCCGGCAACGGGGAGGGCAUGGUAAACCCCACCGGGAGCAAGAUCGAAUAGGGACGGCACGCCCCGGUUUUCCGGGGCAAGCGGCGUUUCCGCGCCGCCGUCCGGGUAGUAUCGCGCGAGGCGUCCGGUAACGGGCGUCCCAGAUGAAUGGCCAUCCCCGUCGUCGCGUCCCUUGCGGGAUACGGCCGGCGUGGACAGAACCCGGCUUACAGGCCGUCUGGCGGU1 4 | -------------------------------------------------------------------------------- /data/RNaseP-20/k5group47/RNaseP_database_a_bacterial-T.thermophilus.seq: -------------------------------------------------------------------------------- 1 | ; 2 | T.thermophilus.seq 3 | UGGCCCGGGACGAGGGCGCGGUCGCGCCGAGGGCCGAACCCCUCGGGUGAGGAAAGUCCGGGCACCAUAGGGCAGGGUGCCAGGUAACGCCUGGGCGGGGUAACCCGACGGAAAGUGCCACAGAGAAGAGACCGCCAGCGGCCGGGGCUUCCCCCGGUGCGGGCAAGGGUGAAACGGCGGGGUAAGAGCCCACCGCCUGGCCUGGCAACAGGCCGGGGCACGGCAAACCCCACCCGGUGCAAGGCCCGGUAGGCAGGGAGGGCUUGCCCGGCCCGAGAGAACCUGCGGGAUGGGCCGCUUGAGGCCGGUGGCGACACCGGUCCCAGAGAGAUGACCGCGGAAAACAGAACCCGGCUUACGCCUCGUCCCGGAGGCGCCCGAGCGUUCGGGCG1 4 | -------------------------------------------------------------------------------- /data/RNaseP-20/k5group48/RNaseP_database_a_bacterial-Buchnera-APS.seq: -------------------------------------------------------------------------------- 1 | ; 2 | Buchnera-APS.seq 3 | UGAAGUUGACUAAAAACAGUCGCUGUUUAGUUUUUAAAAAUUAAAAAGAGGAAAGUCCGGGCUCCAUAGAGCAGGGUGCCAGAUAACAUCUGGAAAGCGUGAGCUUAUGACUAGUGCAACAGAAAAUAAACCACCUAUUUUGUAAUAUAUAAAAAUAUGGCCAGGGUGAAAAGGCGUGGUAAGAGCACACCGCAUAAUUGGUAACAAUUCAUGGCAUGGUAAACUCCACCCGGAGCAAAGCCAAAUAUAGGAUAAAUUUUUUGUACUGCUCGUACUUCUUAAACCUGGGUAGGCUGCUUGAAUUAGUAAGUGAUUGCUAAUCUAGAUGAAUGACUGUUAAAACAGAACCCGGCUUACACGAGUCAACUUCAAUAAC1 4 | -------------------------------------------------------------------------------- /data/RNaseP-20/k5group48/RNaseP_database_a_bacterial-C.crescentus.seq: -------------------------------------------------------------------------------- 1 | ; 2 | C.crescentus.seq 3 | CGGACCAGAUGAUCGGGCGGUCGCGUCGUCUUCGGACGCCGAGGAAAGUCCGGGCUCCACGGUGACAAGGCGGUGGGUAACGCCCACCGGGAGCGAUCCCAGGGAUAGCGCCACAGAAAGCAAACCUCCUCCCUACGGGGCGGGAAGGGUGAAAGGGUGGGGUAAGAGCCCACCGCGGACCUGGUGACAGGGACGGCAUGGCAAGCCCCGCCUGGAGCAAGACCGAAUAGGGAUCCCGCGUCGGCCUCGCGCCGACUAGGCCGUCACUGGCUGAGAGGAUCCGGGUAGGUCGCGAGAGCCGUCCAGCAAUGGCCGGCCUAGAGGAAUGAUCGUCGCCGUCUCCCUGUCUUCGGAUGGGCGGGGCGGAACAGAACCCGGCUUACAGAUCAUCUGGUCCG1 4 | -------------------------------------------------------------------------------- /data/RNaseP-20/k5group48/RNaseP_database_a_bacterial-C.hydrogenoformans.seq: -------------------------------------------------------------------------------- 1 | ; 2 | C.hydrogenoformans.seq 3 | AAAAGCGAGUAAGCCGGAUGACCGCGGGGAGAAAUCCCUGAGGAAAGUCCGAGCUCCAUAGGGCAGGAUGCCGGGUAACGCCCGGUGGAGGCGACUCCAAGGAAAGUGCCACAGAAACAAACCGCCGGUAAGGGUGGAAAGGUGAGGUAAGAGCUCACCAGCGGGCAGGUAACUGUCCGGCUAGGCAAACCCCAUCCGGAGCAAGACCAAAUAGGGGGACUAUAGAGUGGCCCGCUCUGUCCCCGGGUUGGUCGCUUAAGGCCUCUGGUGACAGAGGUCUCAGAUAGAUGGUCAUCCUCGACAGAACUCGGCUUACAGGCUUACUCGCUUG1 4 | -------------------------------------------------------------------------------- /data/RNaseP-20/k5group48/RNaseP_database_a_bacterial-P.marinus.seq: -------------------------------------------------------------------------------- 1 | ; 2 | P.marinus.seq 3 | GAAAGCAGGAGAGGUGAUCGCAAUCGAGAUUUAUCGCGUUUCCGCAAUAAACUCUCGGUUGAGGAAAGUCCGGGCUCCCAGAUGGUCCAACUUGCUGGGUAACUCCCAGUGCGGGUGACCGUGAGGAUAGUGCCACAGAAACACACCGCCGAUGUCUCAUAGAGCACAGGCAAGGGUGCAAAGGUGCGGUAAGAGCGCACCAGCAGUAUCGAGAGGUACUGGCUUGGUAAACCCCGGUUGGGUGCAAGGCAAAGGUUUUAGGAUGACCAUUUUGCCUAUUUCCUAUUUAAAGCCGCUCGAGGCUGUUGGAGACAACAGUCCCAGAUAGAUGAUCACCCACUAACCAAUUUUGGAUAGUGAACAGAACCCGGCUUACUUCCUGCUUUC1 4 | -------------------------------------------------------------------------------- /data/RNaseP-20/k5group48/RNaseP_database_a_bacterial-S.caesia-K76T.seq: -------------------------------------------------------------------------------- 1 | ; 2 | S.caesia-K76T.seq 3 | GAGGAAAGUCCGGGCUCCACAGGGCAGGGUGGUUGCUAACAGCAACCCGGGGUGACCCGCGGGACAGUGCCACAGAGAACAGACCGCCCGGCCGUCUCGGCCGGGUAAGGGUGAAACGGUGGUGUAAGAGACCACCAGCGCCUCGGGUGACCGGGGCGGCUCGGUAAACCCCACCCGGAGCAAGGCCAAGAGGGAGCCGCGAGGCUCCUGCGCAGGCGUUCGAGGGCGGCCCGUCCGAUGCCUGCGGGUAGGCCGCUGGAGCCUGUCGGCGACGGCAGGCCAAGAUGGAUGGUCGCCCAGCGUCCGCCGCGAGGCGGGCGUGGACAGAACCCGGCGUAG1 4 | -------------------------------------------------------------------------------- /data/RNaseP-20/k5group49/RNaseP_database_a_bacterial-B.thetaiotaomicron.seq: -------------------------------------------------------------------------------- 1 | ; 2 | B.thetaiotaomicron.seq 3 | GCAGUUGGCCGGUCUGUCGCGUGCGCGUUUCGUGCAGGAGGAAAGUCCGGGCAACACAGAGCAUCCUACUUCCUAACAGAAAGCUGUCCGCGAGGGUAGAGUAACGUAGAAGAAAAUAACCGCCGCUCCUUUCGGGGAGAGGUAAGGGUGAGAAGGUGGGGUAAGAGCCUACCAGCAGCAUGGUGACAUGUGGGCUGUACGUCUUAGGAGUUGUAAGGUCAUGUAAACCGGCGUUAUGAGAGUUGCUCGCUCCAUGUCGGAGGGUAGACCGCUAAAGUGUCGUGGUGACACGCCACUCAGAUAAAUGACAGGCACCUUAUUAUAUAAGGUACAGAACUCGGCUUAUAGGCUGACUGCUUUU1 4 | -------------------------------------------------------------------------------- /data/RNaseP-20/k5group49/RNaseP_database_a_bacterial-EM14b-9.seq: -------------------------------------------------------------------------------- 1 | ; 2 | EM14b-9.seq 3 | GAGGAAAGUCCGGGCUCAGAGGGUGCGCGUAUCCCGUUAAGGCUGAUGAAGCCGGAGCGGGGGCGUGAGAGCGCCGGAAAGUGCCACAGAAAACAUACCGCCUUAUGUGUCUUCACACAUAAGGUAAGGGUGAAAAGGUGCGGUAAGAGCGCACCCAGGAAAGGAGAAGGUUUAAGGGAAAAAACGCCCUUGCCGAAUCCUUUCCUGCGGUAAACCCAUACGCGAGCAAGGCCAAGCAGAGGGGAAUUGCGGGAGUUUUCCAAAUCUGACUCCCGCAUGCGGGUUGCACCCUUCCCGCUAACACCCUCGGGUAGGCCGCUUAGAGUAAUGACCCCUUAACACAGAACCCGGCUUA1 4 | -------------------------------------------------------------------------------- /data/RNaseP-20/k5group49/RNaseP_database_a_bacterial-P.aeruginosa.seq: -------------------------------------------------------------------------------- 1 | ; 2 | P.aeruginosa.seq 3 | AGAGUCGAUUGGACAGUCGCUGUCGCGCAAUAGCGCGGUGGAGGAAAGUCCGGGCUCCAUAGGGCAGAGUGCCAGGUAACGCCUGGGAGGCGCGAGCCUACGGAAAGUGCCACAGAAAAUAACCGCCUAAGCGCAACAGCGCCGGUAAGGGUGAAAAGGUGCGGUAAGAGCGCACCGCACGGCUGGCAACAGUGCGUGGCUAGGUAAACCCCACUCGGAGCAAGACCAAAUAGGAAUCCAUUGGCGCGGCCCGCGUUGGAUUCGGGUAGGUCGCUUGAGGCGUACAGUGAUGUGCGUCCCAGAGGAAUGGCUGUCCUCGACAGAACCCGGCUUAUAGAUCGACUCUCCCA1 4 | -------------------------------------------------------------------------------- /data/RNaseP-20/k5group49/RNaseP_database_a_bacterial-S.typhi.seq: -------------------------------------------------------------------------------- 1 | ; 2 | S.typhi.seq 3 | GAAGCUGACCAGACAGUCGCCGCUUCGUCGUCGUCCUUUCGGGGAGACGGGCGGAGGGGAGGAAAGUCCGGGCUCCAUAGGGCAGGGUGCCAGGUAACGCCUGGGGGGGGAAACCCACGACCAGUGCAACAGAGAGCAAACCGCCGAUGGCCCACGCAAGUGGGAUCAGGUAAGGGUGAAAGGGUGCGGUAAGAGCGCACCGCGCGGCUGGUAACAGUCCGUGGCACGGUAAACUCCACCCGGAGCAAGGCCAAAUAGGGGUUCAUAAGGUACGGCCCGUACUGAACCCGGGUAGGCUGCUUGAGCCAGUGAGCGAUUGCUGGCCUAGAUGAAUGACUGUCCACGACAGAACCCGGCUUAUCGGUCAGUUUCAC1 4 | -------------------------------------------------------------------------------- /data/RNaseP-20/k5group49/RNaseP_database_a_bacterial-Saccharomonospora-K180.seq: -------------------------------------------------------------------------------- 1 | ; 2 | Saccharomonospora-K180.seq 3 | GAGGAAAGUCCGGGCUCCACAGGGCAGGGUGGUUGCUAACGGCAACCCGGGGUGACCCGCGGGACAGUGCCACAGAAAACAGACCGCCCGGCCACCGGCCGGGUAAGGGUGAAACGGUGGUGUAAGAGACCACCAGCGCCUCGGGUGACCGGGGCGGCUCGGUAAACCCCACCCGGAGCAAGGCCAAGAGGGAGCCGUGAGGUUCCUGCGCAGGCGUUCGAGGGCUGCCCGCCCGAUGCCUGCGGGUAGGCCGCUUGAGCCUGCCGGCGACGGCAGGCCCAGAUGGAUGGUCGCCCAUCGUCCGCCGCGAGGCGGACGUGGACAGAACCCGGCGUAG1 4 | -------------------------------------------------------------------------------- /data/RNaseP-20/k5group50/RNaseP_database_a_bacterial-C.psittaci-6BC.seq: -------------------------------------------------------------------------------- 1 | ; 2 | C.psittaci-6BC.seq 3 | UCGGAAGAGUAAGGCAACCGCUUUUUGUACCUUUACUAAGGUAUAUUAAGAGGAAAGUCUGGACUUCAUAAGAAAAGAUACUGGAGAAACUCCAGGGGCCGUAAGGCUACGGAAAGUGCAACAGAAAACAUUCCGCUAUAAAAGGGUCUUUUUAUAGACAGGCUGAAAAUUCCUAUUUUAAGAAUAGGAGCUAUUAAGGUGACUUAGUAGACGUGCAAACCCUAUCUGAAGCAAGAGAAAAAGUUUUUGUUUCUGCAUAAUGAGGAAUGGUAUUCCUCAUGAACUUUUUCAUAAUCGCUUGAGGGAUAUAGUAAUAUAUCCCCUAGAUGAAUGGUUGCCCUCAAGAUGGGUUUUCUCAUCUUGUAGACAGAANCCGGCUUACUCGCUC1 4 | -------------------------------------------------------------------------------- /data/RNaseP-20/k5group50/RNaseP_database_a_bacterial-H.influenza.seq: -------------------------------------------------------------------------------- 1 | ; 2 | H.influenza.seq 3 | CGAGUUGGUUAGACAAUCGCUGGUUUAUUGAAGCCCUUAACCGUAUUUAUACGACCUAGUGGGACAAGUAAACGAGAGGAAAGUCCGAGCUACACAGGGCAGAGUGCCGGAUAACGUCCGGGCGGCGUGAGCCGACGACCAGUGCAACAGAGAGCAGACCGCCGUGUAAACGGUAAGGGUGAAAGGGUGCGGUAAGAGCGCACCGUGCCGUUGGUAACAACGUGCAGCAGGGUAAACUCCACUCGUAGCAAGACCAAAUAGGAACUCAAUGGGUGGCCCGUCCAGAGUUCGGGUAGGUUGCUUGAGCGGCAGAGUAAUUUGUCGCCUAGAGGAAUGAUUGUCCACGACAGAACUCGGCUUAUCGACCAACUCAAAAC1 4 | -------------------------------------------------------------------------------- /data/RNaseP-20/k5group50/RNaseP_database_a_bacterial-M.bovis.seq: -------------------------------------------------------------------------------- 1 | ; 2 | M.bovis.seq 3 | CGGACGAGUUGGCUGGGCGGCCGCGGCUUGUGUGGAUUCACGAGGUUCAGCGUCGAGUCGAGGAAAGUCCGGACUUCACAGAGCAGGGUGAUUGCUAACGGCAAUCCGAGGUGACUCGCGGGAAAGUGCCACAGAAAACAGACCGCCAUCCUCGUGGUGGCAAGGGUGAAACGGUGCGGUAAGAGCGCACCAGCAUUCCGGGUGACCGGGGUGGCUAGGCAAACCCCACCCGAAGCAAGGCCAAGAAGGCCGCACCGAAAGUGCGGCCGCGCAGGCGCUUGAGGGUUGCUCGCCCGAGCCUGCGGGUAGGCCGCUCGAGGCACCCGGUAACGGUGUGUCCAGAUGGAUGGUCGCCGCCGUGCCGCCGUUAGCUUGGCUGUGGCGGCGCGGAACAGAAUCCGGCUUACAGGCCAACUCGUCCG1 4 | -------------------------------------------------------------------------------- /data/RNaseP-20/k5group50/RNaseP_database_a_bacterial-PS31.seq: -------------------------------------------------------------------------------- 1 | ; 2 | PS31.seq 3 | GAGGAAAGUCCGGGCUCCACGAAACAAGGGUGGCGGGUAACGCCCGCCGGCGUUCCUUCGGGGGCGCAAGGGAAAGUGCCACAGAGAGUAUACCGCCGAUGAUCCCGGACUUGAUCCGGGAACAGGCAAGGGUGAAAGGGUGCGGUAAGGGCGCACCGGGGGGCUGGCAACAGCCACCGCAUGGCAAACCCCACCCGGAGCAAGGCCGAAUAGGGGCCGCGUGCCCAUCAGCAAUGGUGGGUAGGGGAGUUUCGCCCCGAGCGGCCCGGGUUGGCUGCUAAAGCGCCGGAGCAAUCCGGCGACCAGAUGAAUGGCUGCCACCGCAGGCCCGUCCCGCAAGGGAUACCGCCUGAGGAGACAGAACCCGGCUUA1 4 | -------------------------------------------------------------------------------- /data/RNaseP-20/k5group50/RNaseP_database_a_bacterial-Rr368.seq: -------------------------------------------------------------------------------- 1 | ; 2 | Rr368.seq 3 | GAGGAAAGUCCGGGCACCGCAGGGCAGGAUGCCAGCUAACGGCUGGUCGGCGAGUCGAGCACCCGCACGCGCGCCUUGGCGUGUAGGAAGCGGCGAAGCCGAAGGAAAGUGCCACAGAAACCAGACCGCCAUUCCCGGACAGCCCCGGCGCGGGCGGGAGUGGUCAGGGUGAAACGGUGCGGUAAGAGCGCACCAGGCUCCCCGGAGACGGCGAGCGCUGGUAAACCCCAUCCGGUGCAAGACCCGACAGUGCGGUAUGGAACGGCCCGUUCCUUUGACCGCCAGGAUGGUCGCUAGAGGCGCGCGGCGACGUGCGUCCCAGAGAGAUGACCGUGACCCCACGCGAGUGGGCCACAGAAUCCGGCUUA1 4 | -------------------------------------------------------------------------------- /data/RNaseP-20/k5group51/RNaseP_database_a_bacterial-D.vulgaris.seq: -------------------------------------------------------------------------------- 1 | ; 2 | D.vulgaris.seq 3 | GGAGUCGGACAGGUCGUCGUCGCGGGUCGCAAGACCCGGGGAGGAAAGUCCGGGCUUCACAGGGCAGGACGCUGGGUAACGCCCAGGGGGAGCGAUCUCCGGAGAGUGCCACAGAGAGCAGACCGCCCGCGUUCGCGCGGGUUAGGGUGAAACAGGUGGGGUAAGAGCCCACCAGUUGCGGGUGGUGACAUCGCAAGCUAGGAAAACCCCGUCCGAAGCAAGACCAAAUAGGGGAGCGCCAAGGUCGGCCCGACCGAUGCUCCCGGGUAGGUUGCUUGAGGGUGCAGGUAACUGCACUCCUAGAGGAAUGACGACCCCCCGCGAGGGGACAGAACCCGGCUUAUCGUCCGACUCCCACU1 4 | -------------------------------------------------------------------------------- /data/RNaseP-20/k5group51/RNaseP_database_a_bacterial-E.coli-JM109.seq: -------------------------------------------------------------------------------- 1 | ; 2 | E.coli-JM109.seq 3 | GAAGCUGACCAGACAGUCGCCGCUUCGUCGUCGUCCUCUUCGGGGGAGACGGGCGGAGGGGAGGAAAGUCCGGGCUCCAUAGGGCAGGGUGCCAGAUAACGCCUGGGGGGGAAACCCACGACCAGUGCAACAGAGAGCAAACCGCCGAUGGCCCGCGCAAGCGGGAUCAGGUAAGGGUGAAAGGGUGCGGUAAGAGCGCACCGCGCGGCUGGUAACAGUCCGUGGCACGGUAAACUCCACCCGGAGCAAGGCCAAAUAGGGGUUCAUAAGGUACGGCCCGUACUGAACCCGGGUAGGCUGCUUGAGCCAGUGAGCGAUUGCUGGCCUAGAUGAAUGACUGUCCACGACAGAACCCGGCUUAUCGGUCAGUUUCACCU1 4 | -------------------------------------------------------------------------------- /data/RNaseP-20/k5group51/RNaseP_database_a_bacterial-M.xanthus.seq: -------------------------------------------------------------------------------- 1 | ; 2 | M.xanthus.seq 3 | GAGGAAAGUCCGGGCUCCAGAGGGCAGGGUGCUGGCUAACGGCCAGUCGAGGCGACUCGCAGGAAAGUGCCACAGAAAACAGACCGCCCGUUCCGAAAGGGGCGGGUAAGGGUGAAACGGUGCGGUAAGAGCGCACCGCGUCCGGGGUGACUCGGACGGCUCGGUAAACCCCGCCUGGAGCAAGAGCCAAUAGGAGCGCGUCCUCGCCGUACGGAGGACAGGGAUGGCCCGUCCCAUGCGUUCGGGUUGCUCGCUGAUGAGGCCCCUGGGCAACCAGGGCCCUUAGAUGAAUGUUCACCGCCCAUCCCGAAAGGGGUGGGAACAGAAUCCGGCUUA1 4 | -------------------------------------------------------------------------------- /data/RNaseP-20/k5group51/RNaseP_database_a_bacterial-Oscillatoria-PCC7515.seq: -------------------------------------------------------------------------------- 1 | ; 2 | Oscillatoria-PCC7515.seq 3 | GGGGAGGAAAGUCCGGGCUCCCAAAAGGCCAAGCUUGCUGGGUAACGCCCAGUGCGAGCGAUCGCGAGGAUAGUGCCACAGAAAUAUACCGCCCUCUAGAUAGAAGAUUUCUCCUGUUUAGUGGGGUAAGGGUGCAAAGGUGCGGUAAGAGCGCACCAGCAGUGUCGUGAGGCACUGGCUAGGUAAACCCCGGCUGGGAGCAAGGUCGGAGGAAUCAUGGUUGGUCUUUUUCCAGUUCCGUCGCACUAUAGGUAAAUCUAUGGUGUUAGGUGUACCGCAAGAGGUGUCUGGUAACAGGCAUCCCAGAUAGAUAACUGCCCUCUUAACUGGUUUCAGCUAAGGGAACAGAACCCGGCUUA1 4 | -------------------------------------------------------------------------------- /data/RNaseP-20/k5group51/RNaseP_database_a_bacterial-S.caesia-K163.seq: -------------------------------------------------------------------------------- 1 | ; 2 | S.caesia-K163.seq 3 | GAGGAAAGUCCGGGCUCCACAGGGCAGGGUGGUUGCUAACAGCAACCCGGGGUGACCCGCGGGACAGUGCCACAGAGAACAGACCGCCCGGCCGUCUCGGCCGGGUAAGGGUGAAACGGUGGUGUAAGAGACCACCAGCGCCUCGGGUGACCGGGGCGGCUCGGUAAACCCCACCCGGAGCAAGGCCAAGAGGGAGCCGCGAGGCUCCUGCGCAGGCGUUCGAGGGCGGCCCGUCCGAUGCCUGCGGGUAGGCCGCUGGAGCCUGUCGGCGACGGCAGGCCAAGAUGGAUGGUCGCCCAGCGUCCGCCGCGAGGCGGGCGUGGACAGAACCCGGCGUAG1 4 | -------------------------------------------------------------------------------- /data/RNaseP-20/k5group52/RNaseP_database_a_bacterial-A.ferrooxidans-g.seq: -------------------------------------------------------------------------------- 1 | ; 2 | A.ferrooxidans-g.seq 3 | GGAGUGGGCCAGACGACCGCCGCGGAGCAAUCCGGGGAGGAAAGUCCGGGCUCCACAGGGCAAGGCGCCGGCUAACGGCCGGGAGGCGUGAGCCUACGGAAAGUGCCACAGAAAAUAUACCGCCAAAGCGCGUAAGCGCCGGUAAGGGUGAAAAGGUGCGGUAAGAGCGCACCGCAUUUCCGGCGACGGGAAUGGCAGGGAAAACCCCGCCUGGAGCAAGACCAAAUAGGCGUGCGAUACCGUGGCCCGCGGUGCAUGCGGGUAGGUUGCUGGAGCCUGCGCGUAAGUUCAGGCCUAGAGGAAUGGUCGUCCACGACAGAACCCGGCUUAUCGGCCCACUCCAAUU1 4 | -------------------------------------------------------------------------------- /data/RNaseP-20/k5group52/RNaseP_database_a_bacterial-CPB70.seq: -------------------------------------------------------------------------------- 1 | ; 2 | CPB70.seq 3 | GAGGAAAGUCCGGGCUCCACAGGGCAGGGUGGUUGCUAACGGCAACCCGAGGCGACUCGCGGGAAAGUGCCACAGAGAACAGACCGCCGCGGCGACUUCGUCGCUGCGGUAAGGGUGAAACGGUGGUGUAAGAGACCACCAGCGGGCUGGGCGACCAGCUCGGCUUGGUAAACCCCACCCGGAGCAAGGUCAAAAGGGCAGGUUCGCCUGUCUGCGCAAGCGUUCGAGGGCGGCCCGCCCGAGCUUGCGGGUAGACCGCUAGAACCGGUCGGCAACGGCCGGUCCAGAUGGAUGGUCGCCACUGCGCGAGAGCGCGGUACAGAAUCCGGCUUAC1 4 | -------------------------------------------------------------------------------- /data/RNaseP-20/k5group52/RNaseP_database_a_bacterial-E.thermomarinus.seq: -------------------------------------------------------------------------------- 1 | ; 2 | E.thermomarinus.seq 3 | GAGGAAAGUCCGGGCUCCGCAGGGCAGGAUGCUGGGUAAUACCCAGUGGGGGCGACCCUAAGGAUAGUGCAACAGAAAUAUACCGCCUGACACUUAAUAUAUGUAGCUAUAGAUGUUACCAUAUAUUAAGUGCCGGGUAAGGGUGGGAAGGUGAGGUAAGAGCUCACCAGCAGCUAGGCGACUAGCUGGCUCUGUAAACCCCAUCUGGAGCAAGACCAAGUUAGGGACAUAAAAAGGUGGUGGCCCGUCACCGUCCCGGUUGGUAGGUCGCUAGAGCCUAUUGGCGACAAUAGGCGUAGAUAGAUGGCUGUCUAACACAGAACCCGGCUUA1 4 | -------------------------------------------------------------------------------- /data/RNaseP-20/k5group52/RNaseP_database_a_bacterial-PF101.seq: -------------------------------------------------------------------------------- 1 | ; 2 | PF101.seq 3 | GAGGAAAGUCCGGGCUCCAUAGGGCAGGGCGCUCGUCGAGACUGGCGGCGGAAGUUCGCCAGUCAAGGCGAGGGAGUUGCUCCGGCGAGAUGCUGGGGCAACUUCGGAAAGUGCCACAGAAACCAUACCGCCGUCGGGCUAAGCGGCACUGUGGCUUCCGCUGCCAGCCGCUGCAGUGUUCGCGUUUCCCGGCGGUAAGGGUGAAAUGGUGGGGUAAGAGCCCACCAGCACGACCGCGAGGUCGUGGCUGGGCAAACCCCGCCCGGAGCAAGACCAAAUAGGGGGCGCUAUCAGGUUGCCCGCCGAUGCCCCCGGGUCGGUCGCUUAGAGAAAUGGUCGCCAGCGUCAGGGCUAAAACCUGACGCCACAGAACCCGGCUUA1 4 | -------------------------------------------------------------------------------- /data/RNaseP-20/k5group52/RNaseP_database_a_bacterial-T.aquaticus.seq: -------------------------------------------------------------------------------- 1 | ; 2 | T.aquaticus.seq 3 | UGCCCCAGGAUAGGGGUGCGGUCGCGCCCGGGGGACUUCCCCCCUGGGUGAGGAAAGUCCGGGCACCAUAGGGCAGGGUGCCAGCUAACGGCUGGGCGGGGCAACCCGACGGAAAGUGCCACAGAGAAGAGACCGCCAGCGGCCGGGGCUUCCCCGGUGCGGGCAAGGGUGAAACGGUGGGGUAAGAGCCCACCGCCUGGCCUGGCAACAGGCUGGGGCACGGCAAACCCCACCCGGUGCAAGGCCCGAUAGGCAGGAAGGGCUUGCCCGGCCCGUUAGAACCUGCGGGAUGGGCCGCUUGAGGCCGGUGGCGACACCGGUCCCAGAGAGAUGACCGCGUAAAACAGAACCCGGCUUACGCCCUAUCCUGGGGACCCCGAGCGCAGGCUCGGGG1 4 | -------------------------------------------------------------------------------- /data/RNaseP-20/k5group53/RNaseP_database_a_bacterial-CPB144.seq: -------------------------------------------------------------------------------- 1 | ; 2 | CPB144.seq 3 | GAGGAAAGUCCGGGCUCCAUAGGGCAGGGUGCCAGGUAACGCCUGGGGGGCGCAAGCCCACGACCAGUGCAACAGAGAGCAAACCGCCGAUGGCCCCCCCAAUAGAUUUCAGGUUGCAGCAAGGCAGCAAUCGCUUGAGUCCUCAGGAGCUUAGGUAACUAAGUGACUGGGGUGAAAGCGAGAAGCUAACGCAGCAGCGGCCUGAAAGAUGCAGGGGAUGUGGGAUCAGGUAAGGGUGAAAGGGUGCGGUAAGAGCGCACCGCGCGGCUGGUAACAGUUCGUGGCACGGUAAACUCCACCCGGAGCAAGGCCAAAUAGGGGUUCACCAGGUACGGUCCGUACUGAACCCGGGUAGGCUGCUUGAGCCAGUGAGCGAUUGCUGGCCUAGAUGAAUGACUGUCCACGACAGAACCCGGCUUAC1 4 | -------------------------------------------------------------------------------- /data/RNaseP-20/k5group53/RNaseP_database_a_bacterial-Pseudoanabaena-PCC6903.seq: -------------------------------------------------------------------------------- 1 | ; 2 | Pseudoanabaena-PCC6903.seq 3 | GAAAGAGUAAGCGAGCAGUUGCGAAAUUAGUCUUAAAGUAUAAUGAAAAUUUGCUUUAAGUACGGAUUUUGAGGAAAGUCCGGGCUUCCAAGAAGAUCAGGCUGCUGGAUAACGCCCAGUGCGAGCAAUCGUGAGGAUAGUGCCACAGAAAGAUACCGCCUAACUUCGGUUAGGUAAGGGUGCAAAGGUGUGUUAAGAGCGCACCAGCAGGGUCGUGAGGCUCUGGCUCGGUAAACCCCAGUCGGAAGCAAGGCGAGAGGAAAUAAGCGUUGCGAUCUUCAAUAGACCUUAUUUCCGUGACUUAACUGCGUUUAGUGCGCGAAAGCGUGGCAAGCGUAGUUAAGUGUGUGCCGCAAGAGGUAUUUGGUAACAAAUAUCCCAGAUAGAUAACCGCUAGGGCAGUUGUUAUCAACUCCCAAAACAGAACCCGGCUUAUGUCUUACUCUUUCU1 4 | -------------------------------------------------------------------------------- /data/RNaseP-20/k5group53/RNaseP_database_a_bacterial-SM-A34(56).seq: -------------------------------------------------------------------------------- 1 | ; 2 | SM-A34(56).seq 3 | GAGGAAAGUCCGGGCUCCUUCGGACAGGGCGCCAGGUAACGCCUGGGGGGCGUGAGCCCACGGAAAGUGCCACAGAAAAUAUACCGCCAGCUUCGGCUGGUAAGGGUGAAAUGGUGCGGUAAGAGCGCACCGCGCGACUGGCAACAGCUCGCGGCACGGUAAACCCCGCCCGGAGCAAGACCAAAUAGGGGAGUAGGGCGAUGUACGACGCCCCCAAAAGGGGUGUUCGGGUGUUGCCCACCGCCGGUUCCGANCGGACUCCCGGGUAGGUUGCUUGAGGUAGCCGGUGACGGCUAUCCCANAUGAAUGGUUGUCGAUGACAGAAUCCGGCUUA1 4 | -------------------------------------------------------------------------------- /data/RNaseP-20/k5group53/RNaseP_database_a_bacterial-X.fastidiosa.seq: -------------------------------------------------------------------------------- 1 | ; 2 | X.fastidiosa.seq 3 | GCGGUGAAGUCGGCUGGGCAGUCGCGUCAUCCGAGAGGAUGCCGAGGAAAGUCCGGGCUCCAUAGGGCAAGGUGCCAGGUAACACCUGGGCGGCGUGAGUCGACGGAAAGUGCAACAGAAAGAUACCGCCAAUAUUCCUUUCUAGGAUUCGGUAAGGGUGAAAUGGUGCGGUAAGAGCGCACCGCGAGUUCGGUAACGGACCGGCACGGCAAACCCCACCUGGAGCAAGACCAAAUAGGGAUCCUAUGGUGUGGCCCGCGCUGGAUCCGGGUAGGUUGCUUGAGCACCGUGGUGACGCGGUGCCUAGAUGAAUGGCUGUUCAUGACAGAACCCGGCUUAUAGGCCGACUUCACCGCUUU1 4 | -------------------------------------------------------------------------------- /data/RNaseP-20/k5group53/RNaseP_database_a_bacterial-vHge3-5.seq: -------------------------------------------------------------------------------- 1 | ; 2 | vHge3-5.seq 3 | GAGGAAAGUCCGGGCUCCGCAGGGCAGGGUGCCGGGUAACUCCCGGUGAAGGUGACUUCAAGGAAAGUGCAACAGAGAUAUACCGCGGGCUAGAGAACAGAGAACAGAAUAUUAAGUUUGCUGCAAAGGCAAUCGUAAUCUGGUCUCUGACAUCUGUUCUCUGUUCUCUGGAACGUAAGGGUGGAAAGGUGAGGUAAGAGCUCACCAGCGGCAUGGCGACUUGCCGGUCUAUGUAAACCCCACUCGGAGCAACACCAUGGAGGGACAUAUGGGCUGCCCGCCCGUCCCAUGGAGGUGGCUUGAGCUGUACAGAAAUGUAUGGCCUAGAUAGAUGAUCGUCAAAUACAGAAUCCGGCUUA1 4 | -------------------------------------------------------------------------------- /data/RNaseP-20/k5group54/RNaseP_database_a_bacterial-C.tepidum.seq: -------------------------------------------------------------------------------- 1 | ; 2 | C.tepidum.seq 3 | AAACCGCAAGUGUGCAGUCGCUGUAUGGUAUAACCAUGCAGAGGAAAGUCCGAACUUCACAGGGCAGGGUGCCGGUCGAGAACGUUUGUUCAAGACCGGGGGCAGCGGCGCAAGCUGUCUGUCACAGAGAGUGCAACAGAAAGCAAACCGCUCCGGCUUAAACCGGAGUAAGGGUGAAAAGGGGGUGUAAGAGACCACCAGGCAGGUCAGCAAUGCCCUGCGCUAUGAAAACCUCCCCGAAGCAAGGCCAAAUAAGGAAGCAUUUCCUGCAAGGGAAGAAGGGUUGCCCGCCCAAUGUUUCCGGGUAGGCCGCAUCAGAUAAAUGGCUGCAACAUCACUACUUGAUGGUGAUGGACAGAAUUCGGCUUACAGCUUCGGUUU1 4 | -------------------------------------------------------------------------------- /data/RNaseP-20/k5group54/RNaseP_database_a_bacterial-LGW17.seq: -------------------------------------------------------------------------------- 1 | ; 2 | LGW17.seq 3 | GAGGAAAGUCCGGGCUCCAUAGGGCAGGAUGCCAGUUAACGGCUGGGUGCUAUACGUCGCAAGACCAAGGCAACGGACAGUGCAACAGAGAACAGACCGCCGAUGGCUUUGGGCUGUGCCGCUGCUUGCAGCGGAAAAGUCCCUUUAGCAGAGCGAUGAUCGUUUCGACGGCCAGCGUUUUGCGGGGGGCGAGGCCCAAAGAUCAGGUAAGGGUGAAACGGCGAGGUAAGAGCUCACCGCGCUGGCGGUAACGUUCAGCGGCACGGUGAACCCCAUCCGGAGCAAGACCAAAUAGGGAAGCAUUAGGCGUGGCCCGCGCUGCUUCCGGGUAGGUUGCUUGAGCCUGUCGGUGACGGCAGGCCUAGAGGAAUGAUUGCCGAACCCCGCAAGGGGGGAACAGAACCCGGCUUA1 4 | -------------------------------------------------------------------------------- /data/RNaseP-20/k5group54/RNaseP_database_a_bacterial-M.tuberculosis-g.seq: -------------------------------------------------------------------------------- 1 | ; 2 | M.tuberculosis-g.seq 3 | CGGAUGAGUUGGCUGGGCGGCCGCGGCUCGCGUAGGGCUUGUGUGGAUUCACGAGGUUCAGCGUCGAGUCGAGGAAAGUCCGGACUUCACAGAGCAGGGUGAUUGCUAACGGCAAUCCGAGGUGACUCGCGGGAAAGUGCCACAGAAAACAGACCGCCAUCCUCGUGGUGGCAAGGGUGAAACGGUGCGGUAAGAGCGCACCAGCAUUCCGGGUGACCGGGGUGGCUAGGCAAACCCCACCCGAAGCAAGGCCAAGAAGGCCGCACCGAAAGUGCGGCCGCGCAGGCGCUUGAGGGUUGCUCGCCCGAGCCUGCGGGUAGGCCGCUCGAGGCACCCGGUAACGGUGUGUCCAGAUGGAUGGUCGCCGCCGUGCCGCCGUUAGCUUGGCUGUGGCGGCGCGGAACAGAAUCCGGCUUACAGGCCAACUCGUCCG1 4 | -------------------------------------------------------------------------------- /data/RNaseP-20/k5group54/RNaseP_database_a_bacterial-Nostoc-PCC7413.seq: -------------------------------------------------------------------------------- 1 | ; 2 | Nostoc-PCC7413.seq 3 | GGGGAGGAAAGUCCGGGCUCCCGAAAGACCAGACUUGCUGGAUAACGUCCAGUGCGAGCGAUCGUGAGGAUAGUGCCACAGAAAAAUACCGCCAAGAUUGGGGGCUAGGGACUAGGGACUGGGGACUGGGGAAGAAACUUCCCAAUCCCUAAUCUCAGAUGCUCGAUCCCCAACUUUUGGUAAGGGUGCAAAGGUGCGGUAAGAGCGCACCAGCAGUAUCGAGAGGUACUGGCUCGGUAAACCCCGGUUGGGAGCAAGGCCGAAGGAACUAUGGUUGGUCUUUUACCAGUUCCGCUAUCAGAGAGCCGCUAGAGGCGUUUGGUAACAAACGUCCCAGAUAGAUAAUCGCCCUCGUGUAAAGGAAUUUACAUUGAGAACAGAACCCGGCUUA1 4 | -------------------------------------------------------------------------------- /data/RNaseP-20/k5group54/RNaseP_database_a_bacterial-Prochlorococcus-NATL1.seq: -------------------------------------------------------------------------------- 1 | ; 2 | Prochlorococcus-NATL1.seq 3 | UUGAGGAAAGUCCGGGCUCCUAUUUGGCCAGGCUUGCUGGGUAAUUCCCAGUGCGGGUGACCGUGAGGAUAGUGCCACAGAAACACACCGCCUAAUGCUUAAUGGGGAAAUCCCAACAAGCGCGGCAAGGGUGCAAAGGUGCGGUAAGAGCGCACCAGCAGCAUCGAGAGGUGCUGGCUAGGUAAACCCCGGCCAGGAGCAAGGCGAGGGGCACUGGAUGGCCAUAGACCUUGUCCCUGUAGAGAGCCGCUUGAGGCUAGCGGUAACGUUAGUCCCAGAUAGAUGAUUGCCCAUUCCCUUUCUAAAGAAAGAGGAAAGAACAGAACCCGGCUU1 4 | -------------------------------------------------------------------------------- /data/SRP-10/.DS_Store: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/LinearFold/LinearTurboFold/445808976857df01c57e5d9302a0bbee10515bb5/data/SRP-10/.DS_Store -------------------------------------------------------------------------------- /data/SRP-10/k5group25/SRP_database_protozoan-Babe.bige._GSP-5866.seq: -------------------------------------------------------------------------------- 1 | ; 2 | Babe.bige._GSP-5866.seq 3 | ACCCGGCUUUUGCUGUAACUCUUCUGAGGGGUGCUGGCUUGAACCCAGUGGGCUGUCAUGCUGGCGCGUCCUUGCGCUGGGCUGUCUGGCGCGGGCGGGAGUCGUCCUUGGUGGCCUUCCGUAGGGGAGGCUUCCGGGUCGUUGAAUGCGGCGUACCGCUUCAGGCUGGCAACAGAGCAGAGAUAAGCUUCAGCUUCCGCUACGCGGCAGACCGCAGCCCGCGCUGCUCGCAGUCCAUCAUCGUCAGGCCCCCCACCGGUGAACUUGCCCGCUAUUUUUU1 4 | -------------------------------------------------------------------------------- /data/SRP-10/k5group25/SRP_database_protozoan-Enta.hist._AF487684.seq: -------------------------------------------------------------------------------- 1 | ; 2 | Enta.hist._AF487684.seq 3 | GAUCCUAUCAUAUUUAUCAACGUUUGAGACUACCUCAUACCAUAUCUUCGUACUUCAUUACUAGAUAUACGUAGGUAGAUUUAGUGCGGAAGUAACGAACAGGGUACUGCGUGAGGCCGGUUACGGAGCAACGAAAACCUGUCUACGAUGAUAGACCUGGGUUGAUAUGGAUGUCAAGUUAAUACCUAUGCUAGUAUUGGAACUAAUUUU1 4 | -------------------------------------------------------------------------------- /data/SRP-10/k5group25/SRP_database_protozoan-Leis.infa._AM502223.seq: -------------------------------------------------------------------------------- 1 | ; 2 | Leis.infa._AM502223.seq 3 | GCCGGAGCUCAGCUCUGUAACCGUCGGGGGCUAAUCAGGCUUAGCGGGGAGGACGUGGACCAGCGAGGGUGACGCGCUGCGUUGACGUGGUGCUCUGCUUGGCUGUGUGUCGGUGUGACCCGCACCCCUGCAGAGGGGUGGCGCGGGCCCGCCGUUGAAGCGAGGGAACCGGGUCAGGCCGGAAACGGAGCAGCCCACCCCGCGCACGUCCGCCGUUGCAGAAUCACACCGCGGAGCAUGUCCGCACUUGAGCCCCACGCCUCGUCGCAAAGCCUUUUU1 4 | -------------------------------------------------------------------------------- /data/SRP-10/k5group25/SRP_database_protozoan-Tetr.ther._X56981.seq: -------------------------------------------------------------------------------- 1 | ; 2 | Tetr.ther._X56981.seq 3 | GCCAGGGUAGCAAUACCUGUGUCUAUAUGUGGCAUAAACAAUGUAGGUUGUGAUAGAUAGGAUAUGAGAGUUUGAUGAGACAGUUUGCUAAGAGUGUGCCCGCUCCAAACAAUGAGUUGCUAUGGUGGUAACCUAGUAAUAGGACUCCACCAGGGCAUUAAAGAGCUAAGGAAACGCCUCAGGCUGGCAACAGAACAGGGAAAACUUGCCGCUUGUUGUGGUGGAAGGAUAACAUACUCAUUAACUGUCAAACUAAUCGGUUCUACUAUCAAAGCCAGACAUU1 4 | -------------------------------------------------------------------------------- /data/SRP-10/k5group25/SRP_database_protozoan-Tryp.bruc._AF047723.seq: -------------------------------------------------------------------------------- 1 | ; 2 | Tryp.bruc._AF047723.seq 3 | AGCCGGAGCGCAUUGCUCUGUAACCUUCGGGGGCUGAUCCCGCUUAGCGGGGACGUCUUGGACAAGCGGGGGUUCUGUUGCGUUGACUUGGUGUUCUGCUUGGUUGCGUGUCGGUGUUGAGGUCGCCACUGUAGAGAGGCGUUCUCGCGCCGUUAAAGUGGGGGGAACGGGUCAGGCCGGUGACGGAGCAGCCCACCUUGCGCACGUUCCCGUUGCAGAAGCACACCGAGGAGCAUCUCAGGACUUUGCGCCCCAAGUGUCGUCGCGAGGCGG1 4 | -------------------------------------------------------------------------------- /data/SRP-10/k5group26/SRP_database_protozoan-Cryp.homi._GSP-353151.seq: -------------------------------------------------------------------------------- 1 | ; 2 | Cryp.homi._GSP-353151.seq 3 | GACUGGCUGGGAUAACGCCCAGCUGUAACCAAGUGGAGUCGUUAAAGGUUUAGGAUGGGAUACUGUGUCACUACAUCCUGGAAGUAACAUUGCACGAUGGCUGCCCAUUACAAGGCUGCAGUCUCUAGAGUUGCCUUGGUGGAGACCGAGGUGACUUGUGAGAUAGUGAAACCCGUACCGCCGGAGGCUGGAAACAGAGCACGGAAAAGGGUUCGCUGUAGUACGGUGUAAGGAUAACAGUAGUUGUGUAACUUCCUGGCAUCUCAGUGAUUCGCGAGAUUCAUCUCGGACUAAAUUUUU1 4 | -------------------------------------------------------------------------------- /data/SRP-10/k5group26/SRP_database_protozoan-Enta.inva._GSP-370355.seq: -------------------------------------------------------------------------------- 1 | ; 2 | Enta.inva._GSP-370355.seq 3 | GCUCGGAUAUUUUACGAAUAUCUGUGACCAUAAGGUUUGGGAGCUUAAAAAUUGGAAUUGGUGUUUUGAGAAGUAGAUGUGUUUGAGACUACCUCGAUCCAUAUCUUCGUUCAUCACUGCGAGUUUUUCGGAAGAGAGGCUUUUGGGGAUGGUAAGGAACAGGGUAAUGCGUCAGGCCGGCAACGGAGCAGCGAAAACCUGUCGACGAAUGAUAGACCUGGAACGAAAUGGAUGUCAAGUGUUUACCAAUCAAAAUGCUGGGACUGAUUUU1 4 | -------------------------------------------------------------------------------- /data/SRP-10/k5group26/SRP_database_protozoan-Oxyt.trif._GSP-99928.seq: -------------------------------------------------------------------------------- 1 | ; 2 | Oxyt.trif._GSP-99928.seq 3 | GCUCAGGAGGAUUUAUUCUCUGUAACAUCGUGGGUUCGGUUCUGCGUGUGCUUGUAGGACUAAGAGUGAACCUGUUAUGACGCUGUGCUUUGGCUUGUCCAUUUCAAAUUAGGUGUCAACAAUGUGGGCUUAGAGUAGUCUUCGCUUUCAUGGUUGUCAAAGAAGUCGGGAAUGCCUCAGGCUGGCAACAGAGCAGGGAAAACGACUCGCACUUAAUAGUGAAAGGAUAGCAAGCCUUUAUAGCGUCGAAGGUUAUCGCUUGGCUCCUAACUGGUAUUCGCAUGGCUGUGGCAUCAAUACCUUU1 4 | -------------------------------------------------------------------------------- /data/SRP-10/k5group26/SRP_database_protozoan-Phyt.ramo._GSP-164328.seq: -------------------------------------------------------------------------------- 1 | ; 2 | Phyt.ramo._GSP-164328.seq 3 | GCUGGGUUGGGUGGCGCCAACUUGUAACGGGUAUGCUUCUGCUCGGGUAGUAAGGUGUGAGGGUUGUGGCAUGCGUUGUGUUGUCACUAUCCCCAGGAUGUGGAAGGCGCGUCCAUCUCAAACCAGGAGUCGACAUUGGGACAUUGUCGUAAGACACUGUACCGAGGUCACUAAGGAAUGGUGAACUGCCCCAGGCUGGAUAACAGAGCAGGGAAAAGCCCUCGCUCUUGGUAGUGGGAGGAUCUCGUGCCAGAAUUCUGACGUGCUAACGCAUCGCUGCAAGCCGCAAUUCGAUCACCUUGCGAUUACAUUUU1 4 | -------------------------------------------------------------------------------- /data/SRP-10/k5group26/SRP_database_protozoan-Tetr.rost._SDB-5909.seq: -------------------------------------------------------------------------------- 1 | ; 2 | Tetr.rost._SDB-5909.seq 3 | GCCAGGGUAGCAAUGCCUGUGACCUCGUGUGGCAUAAACAAUGUAGUUAGAAUAGUCAGAGUAUGAGAGUUUGAUGAGACAGUUUGCUAAGAGUGUGCCCGUUCCAAACAGUGAGUUGCUAUGGUGGAAACCUAGUAAUAGGACUUCACCAGGGCAUUAAAGAGCUGAGGAACCGCCUCAGGCUGGCAACAGAACAGGGAAAACUUGCCGCUUAUUGUGGUGGAAGGAUAACAUACUCAUUAACUGUCAAGCUAAUCGGUUCUGCUAUUCUGAUCAGACACU1 4 | -------------------------------------------------------------------------------- /data/SRP-10/k5group27/SRP_database_protozoan-Dict.disc._BJ387276.seq: -------------------------------------------------------------------------------- 1 | ; 2 | Dict.disc._BJ387276.seq 3 | GCAGGNAUUGGGUAGCGGCAACCUGUAAUCAAGCGAUGCAUUCGAGGCGAGGACGAGAGCAUUGUUAGGACCUUUGGGACAAGCGACGCAUACAGUUGAUCCACACUAACGUUGGUGUCGACAUACUAUCAGUCUCUAAGGAUUGAAAGUAAGUUGAUAAUGACCAAGUCAAGGUCCAGGCUGGCAACAGAGCAGACAGAGCGAGGCACAUCGAUGGGUAGCGAGGAAAGUCGACUUAAAGUCGUCCAAAGGAAAUAACAAUGUAAACUCGAACAAA1 4 | -------------------------------------------------------------------------------- /data/SRP-10/k5group27/SRP_database_protozoan-Leis.infa._SDB-5671.seq: -------------------------------------------------------------------------------- 1 | ; 2 | Leis.infa._SDB-5671.seq 3 | GCCGGAGCUCAGCUCUGUAACCGUCGGGGGCUAAUCAGGCUUAGCGGGGAGGACGUGGACCAGCGAGGGUGACGCGCUGCGUUGACGUGGUGCUCUGCUUGGCUGUGUGUCGGUGUGACCCGCACCCCUGCAGAGGGGUGGCGCGGGCCCGCCGUUGAAGCGAGGGAACCGGGUCAGGCCGGAAACGGAGCAGCCCACCCCGCGCACGUCCGCCGUUGCAGAAUCACACCGCGGAGCAUGUCCGCACUUGAGCCCCACGCCUCGUCGCAAAGCCUUUUU1 4 | -------------------------------------------------------------------------------- /data/SRP-10/k5group27/SRP_database_protozoan-Lept.coll._AF006750.seq: -------------------------------------------------------------------------------- 1 | ; 2 | Lept.coll._AF006750.seq 3 | GCCGGAGCCUUGCUCUGUAACCUUCGGGGGCUUUCACCAGCUGAACAGGGAGCUGUCUGGACCAGCAUAGGGUGCUUGCGGCGUUGACGUGGUGCUCUGCUUGGCUGUGUGUCGGAGGCCUCCGGGUGCCCCCUUGCAGAAGGGGCGCGCCCCCUCCGUUAAAGUAGAGGAACUGGGUCAGGCCGGCAACGGAGCAGCCCACCUCGCGCACGUCUGCCGUUGCAGAACCACACCGCGGAGCCUGUCAUCACCUGCGCCCCAGGCGAUCCUGUGAAGCUUU1 4 | -------------------------------------------------------------------------------- /data/SRP-10/k5group27/SRP_database_protozoan-Plas.falc._AE014819.seq: -------------------------------------------------------------------------------- 1 | ; 2 | Plas.falc._AE014819.seq 3 | GUCCGGCUACUGUUCUUUUUAAGUUCAGUAGCUGUUACAUUCUUGGGACUGCAUUUCGAUGCAAAAGGAAUGGGAUGCUAUAAUAUUUCUGAGAAUUUUCAAUAUCUUAAAAAUUCCCGCCUAUCACAAGACGUCAGUUACUGAACAUAUUCUUCUGGAGAGAGAAUAUGUUGAAGUAAUGAUGAAUCAUGAACCGCCUCAGGCUGGAAACAGAGCAGGGUUAGUGAUCGCUGACGUACGGUGUGAAGAUUACGGUUGAAUAAAAGGAUAUUUCAGAAUCUCAUAAGUAUAAUAUGUACACCAUUUU1 4 | -------------------------------------------------------------------------------- /data/SRP-10/k5group27/SRP_database_protozoan-Tryp.bruc._X57047.seq: -------------------------------------------------------------------------------- 1 | ; 2 | Tryp.bruc._X57047.seq 3 | AGCCGGAGCGCAUUGCUCUGUAACCUUCGGGGGCUGAUCCCGCUUAGCGGGGACGUCUUGGACAAGCGGGGGUUCUGUUGCGUUGACUUGGUGUUCUGCUUGGUUGCGUGUCGGUGUUGAGGUCGCCACUGUAGAGAGGCGUUCUCGCGCCGUUAAAGUGGGGGGAACGGGUCAGGCCGGUGACGGAGCAGCCCACCUUGCGCACGUUCCCGUUGCAGAAGCACACCGAGGAGCAUCUCAGGACUUUGCGCCCCAAGUGUCGUCGCGAGGCGG1 4 | -------------------------------------------------------------------------------- /data/SRP-10/k5group28/SRP_database_protozoan-Cryp.parv._AA532232.seq: -------------------------------------------------------------------------------- 1 | ; 2 | Cryp.parv._AA532232.seq 3 | CCCAGCUGUAACCAAGUGGAGUCGUUAAAGGUUUAGGAUGGGAUACUGUGUCACUACAUCCCGGAAGUAACAUUGCACGAUGGCUGCCCAUUACAAGGCUGCAGUCUCUAGAGUUGCCUUGGUGGAGACCGAGGUGACUUGUGAGAUAGUGAAACCCGUACCGCCGGAGGCUGGAAACAGAGCACGGAAAAGGGUUCGCUGUAGUACGGUGUAAGGAUAACAGUAGUUGUGUAACUUCCUGGCAUCUCAGUGAUUCGCGAGAUUCAUCUCGGACUAAA1 4 | -------------------------------------------------------------------------------- /data/SRP-10/k5group28/SRP_database_protozoan-Eime.tene._CD666347.seq: -------------------------------------------------------------------------------- 1 | ; 2 | Eime.tene._CD666347.seq 3 | GCGAGCCGCUGUUACCCGUGCGGGGGUCGGCUCGGUGGAGGCCUCAGUGGUGCCGCUGUAGUGUGGGGUGUUAGCGGCCAAACGCCCCACUGGGAUCGCACCCCCCGGCGAUCCCCGCGCGGAGGCGGGAGGAUCGCUGGAGAUGCUGCGGCGCGCAACGCCCCAGGCUGGAAACAGAGCAUGUUAAAGUGCCCGCUGCGUUCCGCGGUGGGACAACGGGGGGCCGCGCCCGGGCUGCGGCGGCCCGCGGCGGCCAACGCCGAGCUUUU1 4 | -------------------------------------------------------------------------------- /data/SRP-10/k5group28/SRP_database_protozoan-Leis.braz._SDB-87235.seq: -------------------------------------------------------------------------------- 1 | ; 2 | Leis.braz._SDB-87235.seq 3 | GCCGGAGCGUUGCUCUGUAACCUUCGGGGGCUUCCUAGGUGGAGCGGGGGUGUCGUGGACCAGCGAGGGUGGCGCGCUGCGUUGACGCGGUGCUCUGCUUGGCUGUGUGUCGGUGUGGCCUGCCCCCCUGUAGAGGGGUGUCGUAGGCUACCCGUUGAAGCGAGGGAAACCGGGUCAGGCCGGAAACGGAACAGCCCAUCCUGCGCACGUCCGCCGUUGCAGAAUCACGCCGCGGAGCAUGACCGCACUUGAGCCCCACGCGCCGUCGCAAAACCUUUU1 4 | -------------------------------------------------------------------------------- /data/SRP-10/k5group28/SRP_database_protozoan-Plas.falc._AU088164.seq: -------------------------------------------------------------------------------- 1 | ; 2 | Plas.falc._AU088164.seq 3 | GUCCGGCUACUGUUCUUUUUAAGUUCAGUAGCUGUUACAUUCUUGGGACUGCAUUUCGAUGCAAAAGGAAUGGGAUGCUAUAAUAUUNCUGAGAAUUUUCANNNUCUUAAAAAUUCCCGCCUAUCACAAGACGUCAGUUACUGAACAUAUUCUUCUGGAGAGAGAAUAUGUUGAAGUAAUGAUGAAUCAUGAACCGCCUCAGGCUGGAAACAGAGCAGGGUUAGUGAUCGCUGACGUACGGUGUGAAGAUUACGGUUGAAUAAAAGGAUAUUUCGGAAUCUCAUAAGUAUAAUAUGUACACCAUUUU1 4 | -------------------------------------------------------------------------------- /data/SRP-10/k5group28/SRP_database_protozoan-Thei.annu._NW_001091934.seq: -------------------------------------------------------------------------------- 1 | ; 2 | Thei.annu._NW_001091934.seq 3 | GCCUGGCUUAUUGCUGUAACUCCGGAGGCACGAGUGUGAACAUGAGGGGGUGUAUUAGUUCGCGGGUUAGCCGCGCCUGUCUGCUGGACGUCUGAGUCGAUUGCGGGCUCUAGUGUAAGCUUGAGCUCGCGGCCGGUGCGGUUCGGCGGAACGCUCCAGGCUGGUAACAGAGCAGAGAAAAGCCGACGCUUUGACUGGCCAGCAGACCGCAGGUGUAUCUCAACCCGUCCAGACUUCAAAUGCAUUGUACCCACCAGGACAUGCUCGUAUUUUUU1 4 | -------------------------------------------------------------------------------- /data/SRP-10/k5group29/SRP_database_protozoan-Cryp.parv._XM_626716.seq: -------------------------------------------------------------------------------- 1 | ; 2 | Cryp.parv._XM_626716.seq 3 | GACUGGCUGGGAUAACGCCCAGCUGUAACCAAGUGGAGUCGUUAAAGGUUUAGGAUGGGAUACUGUGUCACUACAUCCCGGAAGUAACAUUGCACGAUGGCUGCCCAUUACAAGGCUGCAGUCUCUAGAGUUGCCUUGGUGGAGACCGAGGUGACUUGUGAGAUAGUGAAACCCGUACCGCCGGAGGCUGGAAACAGAGCACGGAAAAGGGUUCGCUGUAGUACGGUGUAAGGAUAACAGUAGUUGUGUAACUUCCUGGCAUCUCAGUGAUUCGCGAGAUUCAUCUCGGACUAAAUUUUU1 4 | -------------------------------------------------------------------------------- /data/SRP-10/k5group29/SRP_database_protozoan-Dict.disc._AJ699381.seq: -------------------------------------------------------------------------------- 1 | ; 2 | Dict.disc._AJ699381.seq 3 | AUGCAGGAUUGGGUAGCGGCAACCUGUAAUCAAGCGAUGCAUUCGAGGCGAGGACGAGAGCAUUGUUAGGACCUUUGGGACAAGCGACGCAUACAGUUGAUCCACACUAACGUUGGUGUCGACAUACUAUCAGUCUCUAAGGAUUGAAAGUAAGUUGAUAAUGACCAAGUCAAGGUCCAGGCUGGCAACAGAGCAGACAGAGCGAGGCACAUCGAUGGGUAGCGAGGAAAGUCGACUUAAAGUCGUCCAAAGGAAAUAACAAUGUAAACUCGAACAAA1 4 | -------------------------------------------------------------------------------- /data/SRP-10/k5group29/SRP_database_protozoan-Perk.mari._GSP-31276.seq: -------------------------------------------------------------------------------- 1 | ; 2 | Perk.mari._GSP-31276.seq 3 | GCUGGGUGAGUAGCGAUCGCCUGUAACCCAUGCGGGAGCUGGAUCUGUGUGAAUGGUCGGUCGUGCCUAGGGCUGAUCAGAGAUCGGCCGCCCGUCCCAAGGGGCCACCAGGUCUGGGUGGGAUGAUGGAAGUCGUCGCAUCCGGACAUCUGAAGAAGCGGGUACAGGCUAAGGCUGGGAACAGAGCAGGCAAUACCGCGCGGUGGAAUCAGUGAGGAUGGAAAGUGGUCGAGAGACUGGUAGCCUGGGCAAUAACAUCGACAUGCCAAACACAAAGAUCGUUUUUU1 4 | -------------------------------------------------------------------------------- /data/SRP-10/k5group29/SRP_database_protozoan-Phyt.soja._GSP-67593.seq: -------------------------------------------------------------------------------- 1 | ; 2 | Phyt.soja._GSP-67593.seq 3 | GCCGGGUUGGGUGGCGCCAACUUGUCACGGAUACGCUUCUGUCCGGGUAGUAAGGUGUGAGGGCUGUGGCAUGCGUGGUGGUGUCACUAUCCCCAGGAUGUGGAUGGCGCGUCCAUCUCAAACCAGGAGUCGACAUUGGGACAUUGUCGUAAGGGACUGUACCGAGGUCACUAAGGAAGGGUGUACCGCCCCAGGCUGGUUAACAGAGCAGGGAAAAACCCUCGCUCUUGGUAGUGGGAGGAUCUCGUGCCAGAAUUCUGAUGUGCCGCUACUACGCUGUAAGCCACAGUUCGAUCACCUUGCGUAACACCUUUU1 4 | -------------------------------------------------------------------------------- /data/SRP-10/k5group29/SRP_database_protozoan-Tryp.viva._SDB-5699.seq: -------------------------------------------------------------------------------- 1 | ; 2 | Tryp.viva._SDB-5699.seq 3 | GCCGGAGCUCUCUGCUCUGUCACCUUCGGGGGCCGGCGCCUGUGAGCGGGGAAAGCCUGGACCAGCGGGGGUACUGCUGCGUUGACUUGGUGUUCUGCUUGGCGGUGCGUCCGUUCCGGCGGCGUCACUGUAGAGCGACGCUGGCGAGCGGUUAAUGCGUGGGAAACGGGUCAGGCCGGCAACGGAGCAGCCCACCUCGCGCGCGCCGCCGUUGCAGAAGCACACCGAGGAGCAUCCCAGUGCUCUGCGCCCCAGGCGUCGUCGCGAGCCGGCGCUCAAACUCGAUUUUU1 4 | -------------------------------------------------------------------------------- /data/SRP-10/k5group30/SRP_database_protozoan-Dict.disc._BJ360333.seq: -------------------------------------------------------------------------------- 1 | ; 2 | Dict.disc._BJ360333.seq 3 | AUGCAGGAUUGGGUAGCGGCAACCUGUAAUCAAGCGAUGCAUUCGAGGCGAGGACGAGAGCAUUGUUAGGACCUUUGGGACAAGCGACGCAUACAGUUGAUCCACACUAACGUUGGUGUCGACAUACUAUCAGUCUCUAAGGAUUGAAAGUAAGUUGAUAAUGACCAAGUCAAGGUCCAGGCUGGCAACAGAGCAGACAGAGCGAGGCACAUCGAUGGGUAGCGAGGAAAGUCGACUUAAAGUCGUCCAAAGGAAAUAACAAUGUAAACUCGAACAAA1 4 | -------------------------------------------------------------------------------- /data/SRP-10/k5group30/SRP_database_protozoan-Enta.disp._GSP-370354.seq: -------------------------------------------------------------------------------- 1 | ; 2 | Enta.disp._GSP-370354.seq 3 | GAUUGGAUGAGUAACGCCCAUCUGUAACCAAAUUGUUUGGAAUCAUUAUAAAAAAAUAGAAUUGAUCCUAUCAUAAUUAUGAACAUUUGAGACUACCCCAUCCCAUAUCUUCGUACUUCAUUACUUAAUUUACGUAGGUAGAUUUAGUGCGGAAGGUAACGAACAGGGUACAGCGUGAGGCCGGUUAACGGAGCAACGAAAACCUGUCUACGAAUGAUAGACCUGGGUUGAAAAGGAUGUCAAGUUGAUAUGAUUGAUAGUAUUGGAACUAUUU1 4 | -------------------------------------------------------------------------------- /data/SRP-10/k5group30/SRP_database_protozoan-Leis.braz._AM494942.seq: -------------------------------------------------------------------------------- 1 | ; 2 | Leis.braz._AM494942.seq 3 | GCCGGAGCGUUGCUCUGUAACCUUCGGGGGCUUCCUAGGUGGAGCGGGGGUGUCGUGGACCAGCGAGGGUGGCGCGCUGCGUUGACGCGGUGCUCUGCUUGGCUGUGUGUCGGUGUGGCCUGCCCCCCUGUAGAGGGGUGUCGUAGGCUACCCGUUGAAGCGAGGGAAACCGGGUCAGGCCGGAAACGGAACAGCCCAUCCUGCGCACGUCCGCCGUUGCAGAAUCACGCCGCGGAGCAUGACCGCACUUGAGCCCCACGCGCCGUCGCAAAACCUUUU1 4 | -------------------------------------------------------------------------------- /data/SRP-10/k5group30/SRP_database_protozoan-Plas.gall._GSP-5849.seq: -------------------------------------------------------------------------------- 1 | ; 2 | Plas.gall._GSP-5849.seq 3 | GUCCGGCUAUGUCCGUGCAAGUGCGGAUUUAGCUGUAACUUUCGAGGGGCAGCACUCUUGUGCAGAUAAAUGGGAUACUAUUAAGUUUAUGAGAAUUUCAAUAUUAUAUAUGUUCCCGUCUAUCACAAGACAUCAGUUACUGAGCAUAUUUUGCUGGAAAGGGAAUAUGCUGAAGUAAUGAUGAAUCAUGAACCGCCUCAGGCUGGAAACAGAGCAGGGUAAGUGGUCGCUGAUGUACGGUGUGAAGAUUACGGUUGAACAUUAAGAUAUUUCAGAAUUCUCGUAAACGUAAUAUGUACACCAUUUCUCC1 4 | -------------------------------------------------------------------------------- /data/SRP-10/k5group30/SRP_database_protozoan-Toxo.gond._GSP-398031.seq: -------------------------------------------------------------------------------- 1 | ; 2 | Toxo.gond._GSP-398031.seq 3 | GGUGAGCGUAACGUCUCGCUGUCACCUGAGUGGGGGUCGUCCGUUGGUGGCAGGAGAAUCGCGCUUCCCUGCCUGGCACCGGGUACAAGUGACAAUCUGCCCCUUGCAAGGCCGCAGUCUCCGGUGGGAUGGGGACGGAGGUCCCCAUCUCUCGGGUGAUGAUGAGACGCGCAACGCCUCAGGCUGGAAACAGAGCAGGGAAAAGUGUCCGCUGUGGCGCAGAGCAGGGAUCACAGAGUGUCACCCCGGCUGAACAGGGCAGGUGGAGGAGCUCCUCACACCGCGUUU1 4 | -------------------------------------------------------------------------------- /data/SRP-10/k5group31/SRP_database_protozoan-Eime.tene._GSP-413949.seq: -------------------------------------------------------------------------------- 1 | ; 2 | Eime.tene._GSP-413949.seq 3 | GGCGGGCGUAGCGAGCCGCUGUUACCCGUGCGGGGGUCGGCUCGGUGGAGGCAUCAGUGGUGCCGCUGUAGUGUGGGGUGUUAGCGGCCAAACGCCCCACUGGGAUCGCAGCCCCCGGCGAUCCCCGCGCGGAGGCGGGAGGAUCGCUGGAGAUGCUGCGGCGCGCAACGCCCCAGGCUGGAAACAGAGCAGGGAAAAGUGCCCGCUGCGUUCCGCGGUGGGACAACGGGGGGCCGCGCCCGGGCUGCGGCGGCCCGCGGCGGCCAACGCCGAGCUUUUUU1 4 | -------------------------------------------------------------------------------- /data/SRP-10/k5group31/SRP_database_protozoan-Enta.mosh._GSP-41668.seq: -------------------------------------------------------------------------------- 1 | ; 2 | Enta.mosh._GSP-41668.seq 3 | GUUCGGAUGACUAACGACCAUCUGUUACCUCAAGGUGAGGGAACUUAAGAAUUGGAAUUGGCUACUCGGAAUGUUUGAUCGUCUGAGACUACCCCAACCCAUAUCUUCGUGCAUCACUGUGUGUCUUUCGGAUGGAGGGCAACUGGGGAUGGUAAGGAACAGGGUACUGCGUGAGGCCGGCAACGGAGCAACGAAAACCUGUCCACGGAUGAUAGACCUGGGUUGAAAAGGAUGUCGAGAUCUUGCGGACCUUGUGGGUGGAACUGAUUCUUU1 4 | -------------------------------------------------------------------------------- /data/SRP-10/k5group31/SRP_database_protozoan-Enta.terr._GSP-110771.seq: -------------------------------------------------------------------------------- 1 | ; 2 | Enta.terr._GSP-110771.seq 3 | GAUUGGAUGAGUAACGCCCAUCUGUAACCAUUUUGUAUGGAAUCUUUAAAAAUAGAAUUGAUCCUAUCAUAUUUAUCAACGUUUGAGACUACCUCAUCCCAUAUCUUCGUACUUCAUUACUAGAUUUACGUAGGUAGAUUUAGUGCGGAAGCUAACGAACAGGGUACUGCGUGAGGCCGGUUAACGGAGCAACGAAAACCUGUCUACGAAUGAUAGACCUGGGUUGAUAUGGAUGUCAAGUUAAUACCUAUGCUAGUAUUGGAACUAUUUU1 4 | -------------------------------------------------------------------------------- /data/SRP-10/k5group31/SRP_database_protozoan-Leis.majo._SDB-347515.seq: -------------------------------------------------------------------------------- 1 | ; 2 | Leis.majo._SDB-347515.seq 3 | GCCGGAGCUCUGCUCUGUAACCUUCGGGGGCUAACCAGGCUUAGCGGGGAGGACGUGGACCAGCGAGGGUGAUUUGCUGCGUUGACGUGGUGCUCUGCUUGGCUGUGUGUCGGUGUGGCUUGCCCCCCUGCAGAGGGUGGCGCGGGUCCGCCGUUGAAGCGAGGGAACCGGGUCAGGCCGGAAACGGAGCAGCCCACCCCACGCACGUCCGCCGUUGCAGAAUCACACCGCGGAGCAUGUCCGCACUUGAGCCCCACGCUUCGUCGCGAAGCCUU1 4 | -------------------------------------------------------------------------------- /data/SRP-10/k5group31/SRP_database_protozoan-Plas.viva._GSP-31273.seq: -------------------------------------------------------------------------------- 1 | ; 2 | Plas.viva._GSP-31273.seq 3 | GUCUGGCUGUAUGCCCUCGGGUAUGCAGCUGUAACUUUUAGAGACACGCAAAUUCGUUUGCAAAGAUCAUGGGAUGCUACAAUGUGGAGAGGAUAUUCAACGCCUAAAGUUCGUUCCCGUCUAUCGCAAGACACCAGUUACUGAACAUGUCCUGUUGGAAAGAGAACAUGUUGAAGUAAUGAUGAACUGCAAACCGCCUCAGGCUGGAAACAGAGCAGGGUCAGUGGUCGCUGGUGUACGGUGCGAAGAUUACGGUUGAGCGGGCAAGGUGUCCGAAUCUCUCUGACAGGGUAUGUGCACCAUUGUUUUUGU1 4 | -------------------------------------------------------------------------------- /data/SRP-10/k5group32/SRP_database_protozoan-Enta.hist._BK005670.seq: -------------------------------------------------------------------------------- 1 | ; 2 | Enta.hist._BK005670.seq 3 | GAUUGGAUGAGUAACGCCCAUCUGUAACCAUUUUGUAUGGAAUCUUUAAAAAUAGAAUUGAUCCUAUCAUAUUUAUCAACGUUUGAGACUACCUCAUCCCAUAUCUUCGUACUUCAUUACUAGAUUUACGUAGGUAGAUUUAGUGCGGAAGCUAACGAACAGGGUACUGCGUGAGGCCGGUUAACGGAGCAACGAAAACCUGUCUACGAAUGAUAGACCUGGGUUGAUAUGGAUGUCAAGUUAAUACCUAUGCUAGUAUUGGAACUAUUUU1 4 | -------------------------------------------------------------------------------- /data/SRP-10/k5group32/SRP_database_protozoan-Plas.know._GSP-5851.seq: -------------------------------------------------------------------------------- 1 | ; 2 | Plas.know._GSP-5851.seq 3 | AUCCGGAUGCAUGCUUUCGGGUAUGCAGCUGUAACUUAUGAGACGCGCAAAUUUAUUUGCAAAAAUCAUGGGAUGCUACAAUGUGGAGAGGAUAUUCCAAUGCCUAACGUCCGUUCCCGUCUAUUGCAAGACACCAGUUACUGAAUGUGUUCUGUUGGAAAGAGAACAUAUUGAAGUAAUAAUGAACUGCAAACCGCGUCAGGCUGGAAACAGAGCAGGGUCAGUGGUCGCUGGUGUACGGUGCGAAGAUUACGGUUGAGCGGGCCAGGUGUAUGAAUCUCUCUUGCAGGGUAUGUGCACCA1 4 | -------------------------------------------------------------------------------- /data/SRP-10/k5group32/SRP_database_protozoan-Tric.vagi._GSP-5722-1.seq: -------------------------------------------------------------------------------- 1 | ; 2 | Tric.vagi._GSP-5722-1.seq 3 | GGGUGGGUUGGUGUGACUCCAGCCUGUAAAGCGUAUGCUACCCUUAAAAAAUAGGCAGUCGCGUAGAUCAAGGUAAACUGCGGUUGUCAUGUGUUGAGUGCCCUCCUACCAGGUACUGCUGCGGGGUCGUGGGUCCGACGAAGGUUGGAAUUUCGAUCUUGAUAAUGCAAUCUGCACUGCGUGAGGCCGGUAAACGGAACAGCGAAAAGGAUUCCAGCGGUAUGGUGCGUAGAUUCUGGGCGCGAGCAUGCGCUUCAGCCUCUGACUUGGUUCAAACGGUCCACUAUUUUUUUCCUCGAUCCUUUUU1 4 | -------------------------------------------------------------------------------- /data/SRP-10/k5group32/SRP_database_protozoan-Tric.vagi._GSP-5722-2.seq: -------------------------------------------------------------------------------- 1 | ; 2 | Tric.vagi._GSP-5722-2.seq 3 | GGGUGGGUUGGUGUGACUCCAGCCUGUAAAGCGUACGCUACCCUUAAAAAAUAGGCAGUCGCGUAGAUCAAGGUAAACUGCGGUUGUCAUGUGUUGAGUGCCCUCCUACCAGGUACUGCUGCGGGGUCGUGGGUCCGACGAAGGUUGGAAUUUCGAUCUUGAUAAUGCAAUCUGCACUGCGUGAGGCCGGUAAACGGAACAGCGAAAAGGAUUCCAGCGGUAUGGUGCGUAGAUUCUGGGCGCGAGCAUGCGCUUCAGCCUCUGACUUGGUUCAAACGGUCCACUAUUUUUUCCUCGAUCCUUUUU1 4 | -------------------------------------------------------------------------------- /data/SRP-10/k5group32/SRP_database_protozoan-Tryp.bruc._M80262.seq: -------------------------------------------------------------------------------- 1 | ; 2 | Tryp.bruc._M80262.seq 3 | AGCCGGAGCGCAUUGCUCUGUAACCUUCGGGGGCUGAUCCCGCUUAGCGGGGACGUCUUGGACAAGCGGGGGUUCUGUUGCGUUGACUUGGUGUUCUGCUUGGUUGCGUGUCGGUGUUGAGGUCGCCACUGUAGAGAGGCGUUCUCGCGCCGUUAAAGUGGGGGGAACGGGUCAGGCCGGUGACGGAGCAGCCCACCUUGCGCACGUUCCCGUUCGAGAAGCACACCGAGGAGCAUCUCAGGACUUUGCGCCCCAAGUGUCGUCGCGAGGCGG1 4 | -------------------------------------------------------------------------------- /data/SRP-10/k5group33/SRP_database_protozoan-Plas.berg._DC223490.seq: -------------------------------------------------------------------------------- 1 | ; 2 | Plas.berg._DC223490.seq 3 | GGGGUAUGCAGCUGUAACCGUAAGGGGAAAGCAAAGUAAUUUGCGCAGCCUUUAAGGGAUGUUACUCAUGCCACGAGAAAUUCAAUAUAUAAGAGCUCUCGUCUAUUGCAAGAUAUAAGUUACUGAGCAUGUUAUGUUGGAAAGAUAACAUGCUGUAGUAAUAAUGAAUUGCGGAACGCCUUAGGCUGGAAACAGAGCAGGGUUAGCAAUCGCUUGUAUACGGUGCAAAGUUUGCGAUGAGCGAUUAGUAUAUCUCGAAUCUCGUCAAGCAUGGUAAGCACACCAAUUGGUUG1 4 | -------------------------------------------------------------------------------- /data/SRP-10/k5group33/SRP_database_protozoan-Plas.falc._EF690554.seq: -------------------------------------------------------------------------------- 1 | ; 2 | Plas.falc._EF690554.seq 3 | CUGUUACAUUCUUGGGACUGCAUUUCGAUGCAAAAGGAAUGGGAUGCUAUAAUAUUUCUGAGAAUUUUCAAUAUCUUAAAAAUUCCCGCCUAUCACAAGACGUCAGUUACUGAACAUAUUCUUCUGGAGAGAGAAUAUGUUGAAGUAAUGAUGAAUCAUGAACCGCCUCAGGCUGGAAACAGAGCAGGGUUAGUGAUCGCUGACGUACGGUGUGAAGAUUACGGUUGA1 4 | -------------------------------------------------------------------------------- /data/SRP-10/k5group33/SRP_database_protozoan-Plas.reic._GSP-5854.seq: -------------------------------------------------------------------------------- 1 | ; 2 | Plas.reic._GSP-5854.seq 3 | GUCCGGCUACUGUUCUUUUUAAGUUCAGUAGCUGUUACAUUCUUGGGACUGCAUUUCGAUGCGAAGGAAUGGGAUGCUAUAAUAUUUCUGAGAAUUUUCAAUAUCUAAAAAUUCCCGCCUAUCACAAGACGUCAGUUACUGAACAUAUUCUUCUGGAGAGAGAAUAUGUUGAAGUAAUGAUGAAUCAUGAACCGCCUCAGGCUGGAAACAGAGCAGGGUUAGUGAUCGCUGACGUAUGGUGUGAAGAUUACGGUUGAAUAAAAGGAUAUUUCAGAAUCUCAUAAGUAUAAUAUGUACACCAUUUUUUUUUUU1 4 | -------------------------------------------------------------------------------- /data/SRP-10/k5group33/SRP_database_protozoan-Plas.yoel._GSP-352914.seq: -------------------------------------------------------------------------------- 1 | ; 2 | Plas.yoel._GSP-352914.seq 3 | GUCUGGCUGUAUGCUCCUCGGGGUAUGCAGCUGUAACCGUAAGGGGAAAGCAAAGCAAUUUGCGCAGCCUUUAAGGGAUGUUAUCCAUGUUACGAGAAAUUCAAUAUAUAAGAGCUCUCGUCUGUUGCAAGAUAUAAGUUGCUGAGCAUGUUAUGUUGGAAAGAUAACAUGCUGGAGUAAUAAUGAAUUGCGGAACGCCUUAGGCUGGAAACAGAGCAGGGUUAGCAAUCGCUUGUAUACGGUGCAAAGUUUGCGAUGAGCGAUUAGUAUAUCUCGAAUCUCGUCAAGCAUGGUAAGCACACCA1 4 | -------------------------------------------------------------------------------- /data/SRP-10/k5group33/SRP_database_protozoan-Tryp.bruc._S56681.seq: -------------------------------------------------------------------------------- 1 | ; 2 | Tryp.bruc._S56681.seq 3 | AGCCGGAGCGCAUUGCUCUGUAACCUUCGGGGGCUGAUCCCGCUUAGCGGGGACGUCUUGGACAAGCGGGGGUUCUGUUGCGUUGACUUGGUGUUCUGCUUGGUUGCGUGUCGGUGUUGAGGUCGCCACUGUAGAGAGGCGUUCUCGCGCCGUUAAAGUGGGGGGAACGGGUCAGGCCGGUGACGGAGCAGCCCACCUUGCGCACGUUCCCGUUGCAGAAGCACACCGAGGAGCAUCUCAGGACUUUGCGCCCCAAGUGUCGUCGCGAGGCGGUUU1 4 | -------------------------------------------------------------------------------- /data/SRP-10/k5group34/SRP_database_protozoan-Ento.sulc._AF095839.seq: -------------------------------------------------------------------------------- 1 | ; 2 | Ento.sulc._AF095839.seq 3 | GCCUGGAGGGUGUCACGCCCCUCUGUCACCUGAGUUGGGAGGCACUGUGUGCCUGGGACUGCCCCACACACCCUAGGCCUCCCUUGGCCUGGUUGCACCAUGGUGCCAUGCAGAGACUGCGCCCACUGAAAGACAGCUGCCCUCACUGGCACCGCCUGGCAACAUUGGCGGUGUCUUGGAGGCUAUGAUGCGGAGGGGACUGGGCAAGGCUGGCAACAGAGCAGCCAAAACCUCCCACAGCUGUCAGUUCAGGGAACACGCAGUUGAGUGGUGCUGCAGCAGGUUGGGCUGAGGGUGCAAGGUAGGACUGGGCAUACC1 4 | -------------------------------------------------------------------------------- /data/SRP-10/k5group34/SRP_database_protozoan-Phyt.infe._CV919934.seq: -------------------------------------------------------------------------------- 1 | ; 2 | Phyt.infe._CV919934.seq 3 | GGCGCCAACUUGUCACGGGCAUGCUUCUGUCCGGGUAGUUAGGUGUGAGGGUUGUGGCAUGCGUUAUUGUGACGCUGUCCCCAGGAUGUGGAUGAUGCGUCCAUCCCAAACCAGGAGUUGACAUUGAGGUAUAGUCGUAAGACAGUACAUCGAGGUCACUAAGGAAAGGUAUACCGCCCCAGGCUGGUAAACAGAGCAGGGAAAAGCCCUCGCUCUUGGUAGUGGGAGGAUCUCGUAUCAGAACUCUGAUGUGCU1 4 | -------------------------------------------------------------------------------- /data/SRP-10/k5group34/SRP_database_protozoan-Plas.berg._DC223613.seq: -------------------------------------------------------------------------------- 1 | ; 2 | Plas.berg._DC223613.seq 3 | GGGGUAUGCAGCUGUAACCGUAAGGGGAAAGCAAAGUAAUUUGCGCAGCCUUUAAGGGAUGUUACUCAUGCCACGAGAAAUUCAAUAUAUAAGAGCUCUCGUCUAUUGCAAGAUAUAAGUUACUGAGCAUGUUAUGUUGGAAAGAUAACAUGCUGUAGUAAUAAUGAAUUGCGGAACGCCUUAGGCUGGAAACAGAGCAGGGUUAGCAAUCGCUUGUAUACGGUGCAAAGUUUGCGAUGAGCGAUUAGUAUAUCUCGAAUCUCGUCAAGCAUGGUAAGCACACCAAUUGGUUG1 4 | -------------------------------------------------------------------------------- /data/SRP-10/k5group34/SRP_database_protozoan-Plas.chab._GSP-31271.seq: -------------------------------------------------------------------------------- 1 | ; 2 | Plas.chab._GSP-31271.seq 3 | AACCGGCUGUAUGCUCCUCGGGGUAUGCAGCUGUAACCGUAAGGGGAAAGCAAAGUAAUUUGCGCAGUCUUUAAGGGAUGCUACAUAUGUCGCGGGAAAUUCAAUAUAUAAGAGCUCUCGUCUGUUGCAAGAUAUAAGUUACUGAGCAUGCUAUGUUGGAAAGAUAGCAUGCUGGAGUAAUAAUGAAUUGCGGAACGCCUUAGGCUGGAAACAGAGCAGGGUUAGCAAUCGCUUGUAUACGGUGCAAAGUUUGCGAUGAGCGAUUAGUAUAUCUCGAAUCUCGUCAAGCAUGGUAAGCACACCAAAGGGCUGUUUUUUU1 4 | -------------------------------------------------------------------------------- /data/SRP-10/k5group34/SRP_database_protozoan-Thei.parv._GSP-333668.seq: -------------------------------------------------------------------------------- 1 | ; 2 | Thei.parv._GSP-333668.seq 3 | GCCUGGCUUAUUGCUGUAACUCUUGAGGCACGAGUGUGAACAUGAGGGUUUGUAUUGGGUCGGCGGUGCUCGGCGGCGCCUGUCUGCUAAAAUUCUGAGUCGGUUGCGCGCUUUUGUGUAAGCUUUAGAUCGCGACUGCUACGGCUAGGCGGACCGCUCCAGGCUGGCAACAGAGCAGGGAAUAGCUGACGCUCAGACUGACUAGCAAGACUGCAGAUGUAGCUUGAACCCGCUUCGACUUGAACUACAUUGUACCCACCAGGACAUGCUCGUAUUUCUU1 4 | -------------------------------------------------------------------------------- /data/telomerase-5/.DS_Store: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/LinearFold/LinearTurboFold/445808976857df01c57e5d9302a0bbee10515bb5/data/telomerase-5/.DS_Store -------------------------------------------------------------------------------- /data/telomerase-5/k5group55/telomerase_database-AF221912.98-564.seq: -------------------------------------------------------------------------------- 1 | ; 2 | AF221912.98-564.seq 3 | GGGAGUGGAGGGUGGGCCCGGGACGGGCGCGGACCCGGUAAUCUAACCCUGACUCACAAGAGGCGUAGGCGCCGUGCUUUUGCUCCCCGCGCGCUGUUUUUCUCGCUGACUUUCAGCGUUCGGAAAAGCCCUGUGGCCUAUCGCCAUCCACCAUCCUUUCUGGAACAAACAGACAAAAAAAAAAAUGUCAGCUGCUGGUCCGUUCGCUCCUCCCGGGCCCUGCGGUGGCCGCCAGCCCGCCCUCUCAUCCCCCGCGUCCCGCCUAGAGGCCGCGGUCGGCCCGGGGCUUCUCCGGAGGUGCCCAUUGCCGCCGCGAAGAGUUAGGCUCUGUCAGCCGCGGGCUCUCGGGGGGCCCAGGGCGAGGUUUAGGCCUCGUGGCCGCAGGGACAGCAACGGAGCGGGUCCCCGCGAGCCUGUGCGCGUCCCUGAGCCGUGGGACUUGCACCGGGGACUUUGCUCGGACAAUC1 4 | -------------------------------------------------------------------------------- /data/telomerase-5/k5group55/telomerase_database-AF221915.120-667.seq: -------------------------------------------------------------------------------- 1 | ; 2 | AF221915.120-667.seq 3 | UCACAUUGCUGCGGGGUGGAGGCGUUUUUAACUAACCCUAAUGCAGAGUAAGUGGCUGGGCCUUCCUCACACUGCCUCCCGCUGCGUGAAACCUCGCUGUUUUCUUGGCUAACUUUCAGCGAGGUGAGGCAAGGCGGCAAAAAAAAGUUGGGAGCAGCAACGGCAAGCAAAAAAAAAGUUCCAGCCGAGGCCUCCUCACCACGCGGCCUGGGUCUGAGGGUAACAUGGCCCUGCGGGAGAGAGCCAACACGGGGGGGCCCCGGUCCGGCUAACAGGGCAGGAGGUCGGCCCCAAUUGCCUCAGGCCCAGCCACUCCGGGCCGCGAUCAGCCCGGGCUUUCCCUACUUUGGGGCCCAAUGCUGUCGCGAAGAGUUCGGCUCUGUCAGCCCGGCUGGGUCCGGGUGGGGGCCGGCACAGAGGGACACACCGGGCCGGGGCGCCGAGGAUAGCUACCGCCCGCAGGGAUAGUAAAUAUCCGUGACCAGUGGCCUCGGUGGCUGCGUCUCCCGGAGCAAUGGGACCCGCAAGGCUGCCCUGGUCAUACACGC1 4 | -------------------------------------------------------------------------------- /data/telomerase-5/k5group55/telomerase_database-AF221926.103-507.seq: -------------------------------------------------------------------------------- 1 | ; 2 | AF221926.103-507.seq 3 | ACAGUGGGAAUAGGAGGGAGUCUAUAUUUCUAACCCUAAUAUACCCGGUUCAGGGCUCUUAUGUGGCGCUCGUUGUUUUGCCGGUUGCCUUUCAGCGGGCGAAAGAGCUCAGAGAAGCGAGGACCAAAAAACGGCAGCCGCGGGCCCUCCUGUUCCCACCAUCCCAGCUUUUCCACACUGCGCCUGGGUUCUCACUCAAGUGUUCGGCAGCUUCCACUUACGAGGCCGCGGUCUACCGCUGUCACUGGUAGUCGCGAAGAGUUCGUCUCUGUCAGCCUUGGGAGCCGCGGACGGAGUAUGAGGUCCAGUAAUGAGAGCAGGGAAGAGUAAAGCGAGCCGCGCUACUUGUCCUAUCUGCCGCUCCUAAGCUGUGGGGCGUGUAGGGUACACAAGGCUCCGACAUUC1 4 | -------------------------------------------------------------------------------- /data/telomerase-5/k5group55/telomerase_database-AF221927.113-556.seq: -------------------------------------------------------------------------------- 1 | ; 2 | AF221927.113-556.seq 3 | UCUCUCUGGAGCGGGGCGAUUUCUCUUCCUUCUAACCCUAAUGCGGUGCUUAGGCGACAGUUCUCCGGGUGCGCUCGCUGUUUUUCUGGCUAACUUUCAGCGAGCGGAGAGAGCGAAGCCGUGGUUUACGACGAUAGAGGAGAAAAAAUGUUAGCUGGGGAACGUCCCUUUCCCGAGAGCCCGCGCCAUCCUCUUCCUCGGGCCCAUUGGCGAUAGCCCCCGGCCUCCCUCGCUCACCAGGCCGCGGUCAGCCCGGGCCCUGGCUCUGCUAGGGCGUCCAAUGCUGCCGCGAAGAGUUCGUCUCUGAUUGCCUUGAGGUAGCCGGGCUCGAAUAGGUGGGCUCGCGGCGAUGCGCAGGAAAGAGCAAAACAGUGAACUGGGCGUGUGCUGGGGUCGCGUCCCUGAAGUGUGGGAUGUGCGAUCUGUCCGCUUGUUCAGACAUUG1 4 | -------------------------------------------------------------------------------- /data/telomerase-5/k5group55/telomerase_database-AF221939.99-544.seq: -------------------------------------------------------------------------------- 1 | ; 2 | AF221939.99-544.seq 3 | GGGUUGUGGAGGGUGGGCCUGGGAGGGGAAGCGGUCAGUUUUUGUCUAACCCUAACUGAGAAGGGCGUAGGCGCCGCGCUUUUGUUUCCCGCACGCUGUUUUUUUCGCUGACUUUCAGCGGGCGGAAAAGCCUCGGCCUACCGCCGUCCACCGUACAGUUUGGAGCAAACAAAAAAUGUCAGCUGCUGACUUGCUCGCCCCUCCCAGGACCCUGCGGUGGCUCGCCUCCUUAGCCCCCGCGUCCCGCCUAGAGGCCGCGGUCGGCCCGGGGCUUCUCCGGAGGCACCCAUUGCCGUCGCGAAGAGUUGGGCUCUGUCAGCCGCGGGUCCCUUGGGGGGGCCGAGGGCGAGGCUCUGACCGCAGGGAGAGAAACGGGAGCAGGUCCCCGCGCGCGGUGCGCUUCCCUGAGCUGUGGGACUUGCACCCGGGACUGGGCUCAGACACAU1 4 | -------------------------------------------------------------------------------- /data/telomerase-5/k5group56/telomerase_database-AF221906.96-545.seq: -------------------------------------------------------------------------------- 1 | ; 2 | AF221906.96-545.seq 3 | GGGUUGCGGAGGGAGGGCCCGGGAGGGGUGAGCGUCCAUUAUCGUCUAACCCUAACUGAGAUGGGCGUAGGCGCCGCGCUUUUGCUUCCCGCGCGCUGUUUUUCUCGCUGACUUUCAGCGGGCGGAAAAGCCUCGGCCUACUGCCGUCUACUGUCGUAUCUGGAGCAAACAAAAAAUGUCAGCCGCUGGUCCGCUCGCCCCAUCCGGGAACCUGCGGUGGCUCGUCCGCCCUGCCCCCGCGCUCCGCCUAGAGGCCGCGGUCCGCCCGGGGCUUCUCCGGAGGCACCCAAUGCAGCCGCGAAGAGUUAGGCUCUGUCAGCCGCGGAUCCCGCGGGGGCCAAGGGUGAGGCUUAGGCCGCGGGCCGCAGGAAGAAAAACCGAGCGAGUUCUCACGCGCGGUGCGCUUCCCUGAGCUGUGGGUCGUGCGCCUGGGACUCGGCUCAGACACGU1 4 | -------------------------------------------------------------------------------- /data/telomerase-5/k5group56/telomerase_database-AF221917.99-542.seq: -------------------------------------------------------------------------------- 1 | ; 2 | AF221917.99-542.seq 3 | GGGUUGCGGAGGGUGGGCCUGGGAGGGGUGGCGGUCGUUUUAUGUCUAACCCUAACUGAGAAGGGCAUAGGCGCUGCGCUUUUGUUCCCCGCACGCUGUUUUUCUCGCUGACUUUCAGCGGGCGGAAAAGCCUCGGCCUACUGCCAUCCACCAUCCAGUUUGGAGCAAACAAAAAAUGUCAGCCGCCGGCCUGCUCGCCCCUCCCGGGAUCCUGCGGUGGCUCGCCCGCUUAGCCCCCGCGUCCCGCCUGGAGGCCGCGGUCGGCCCGGGGCUUCUCCGGAGGCACCCAUUGCCGUCGCGAAGAGUUGGGCUCUGUCAGCCGCGGGACCUUUGGGGGCCAAGGGCGAGGCUCUGGCCGCAGGGAGAGAAAACGGAGCGGGUCCCCUUGCGCGGUGCGCUUCCCUGAGCUGUGGGACUUGCACCCGGGACUAGGCUCACACACAU1 4 | -------------------------------------------------------------------------------- /data/telomerase-5/k5group56/telomerase_database-AF221918.97-547.seq: -------------------------------------------------------------------------------- 1 | ; 2 | AF221918.97-547.seq 3 | GGGCUGAGGAGGGUGGGCUCGGGAGGGGCCCGGUCAUUUCUCAUCUAACCCUAACUGAGCAGGGCGUAGGCGCCGCGCUUUUGUUUCCCCGCGCGCUGUUUUUCUCGCUGACUUUCAGCGCGUGGGAAAAGCCUUGGCCUACCGCCGUCCACCGUUCAUUUCGCAGUAAACAAAAAAUGUCAGCCGCUGGCCGGUUCGCCCUUCCCGGGGACCUGCGGUGGCUCGCCCGCCCGGCCCCCGUGCCCCGCCUGAGGCCGCGGUCGGCCCGGGGCUUCUCCGGAGGUGCCCAAUGCCGCCGCGAAGAGUUAGGCUCUGUCAGCCGCGGGUCCCUCGGGGGCCAAGGGCGAGGCGCAGGCCGUCUGGCCGCAGGGAGAGGAACGGAGCGGGUCCCCCAGCGUGGUGCGCUUCCCUGAGCUGUGGGACUUGCACCCGGGACUCGGCUCAAACACGC1 4 | -------------------------------------------------------------------------------- /data/telomerase-5/k5group56/telomerase_database-AF221933.121-679.seq: -------------------------------------------------------------------------------- 1 | ; 2 | AF221933.121-679.seq 3 | UCACAUUGCUGCGGGGUGGAGGCGAUUUUAACUAACCCUAAUGCAGAGUAAGUGGCUGGGCCUUCCUCACACUGCCUCCCGCUGCGCGAAACCUCGCUGUUUUCUUGGCUAACUUUCAGCGAGGUGAGGAGAGGCGGCAAAAAAAAAAGGUUGGGAGCAGCAGCGGCAAACAAAAAAAAAAGUUCCAGCCGAGGCCUCCUCACCCCCGCGGCCUGGGUCUGAGGGUAACACGGCCCUGCGGGAGAGAGGCAACACGGGGGCCCCCGGUCCGGCGAACAGGGCAGGAGGUCGGUCCCAAUCGCCUCACAGGCCCAGCCACUCCGGGCCGCGGUCAGCCCGGGGCUUUCCCCCCCACCAUGGGGGCCCAAUGCUGCCGCGAAGAGUUCGGCUCUGUCAGCCCGGCUGGGCCAGGGUGGGGGCCGGCACAGAGGGACACACCGGGCCGGGGCGCCGGGGAUAGCUACCGCCCGCAGGGAUAGCAAAUAUCCGUGACCAGUGGUCUCGGUGGCUGCGUCUCCCGGAGCAAUGGGACCCGCAAGGCUGCCCUGGUCAUACACAU1 4 | -------------------------------------------------------------------------------- /data/telomerase-5/k5group56/telomerase_database-AF221935.112-602.seq: -------------------------------------------------------------------------------- 1 | ; 2 | AF221935.112-602.seq 3 | GUCCAGCUGCGGGGAGAAAGUGUCGUUCUCUAACCCUAAUGCGAGGGCAAUGCGGGCCCUUUGUUUAAAGUCCCGUUGUCGCGCGAAGCGGGAGCCCUCGCUGUUUUCUUGGCUAACUUUCAGCGAUGGUGAAAGGGCCUAGCAAAGGUUGGGAAGCGUGAUUUAUUGUUGGUGGGCAGAGAGAAAAAAGUUUCAGCCGCGGCCUCCUCCCCGGCGGCCCAGGACCCCCUGUUGCAACGUGCGAAAUGGCGGCCUCGGCCCCCACCUUUGCUCGCAUGCCCAGCCGAGUAGGCCGCGGUCAGCGCCGGCUUCCACGCCAGUGUGGGGCUUGAUGCUGUCGCGAAGAGUUCGUCUCUGUCAGCCUGGCAGGGGGUGCUACGCAGGGUCGGGGUACGGGGGACAGGGAGAUUAAAUAGCUUGACCAGACGCUAUAACCUGUACUGCAUCUCCCAGAGCUGUGGGACCUGCAAAUCUGCGCUGGUCAUACAUUU1 4 | -------------------------------------------------------------------------------- /data/telomerase-5/k5group57/telomerase_database-AF221910.112-554.seq: -------------------------------------------------------------------------------- 1 | ; 2 | AF221910.112-554.seq 3 | UGUCAUUCCGGAGAGGGGCGUUUUCUUCUUUCUCUAACCCUAAUGUAUUGCUUGGGCAGCAGCUCUCUCGGUAUGCUCGCUGUUUUGCUGGCUAACUUUCAGCGAGCAGAGGGCGAAGUCGAAUUUCGGACAAGGGAGAAAAAAUGUUAGCCGGGGAACGCCCCUUUCCCGAAUGCCCGUGCCGUCCUUCCUCUCCUCUGGGCCCGUUGGCGAUAGCCCCCGGCCUCCCUCGCUCCUUAGGCCGCGGUCAGUCCGGGCCCUUGCUCUGGCAUGAGGUCCAUUGCUGCCGCGAAGAGUUCGUCUCUGUCAGCCUUGAGGUGGCCAGCAUGGAAUUGGCGGGCUUGUGGCGGCGCGCGGGAAAAAGCAAAUGGUGAACUAGGUGCGUGUUGUGGUCGUGUUCCUGAAGCGUGGAAUGUGCGAUCUGUGCGCUAGUUCAUACACAC1 4 | -------------------------------------------------------------------------------- /data/telomerase-5/k5group57/telomerase_database-AF221913.109-520.seq: -------------------------------------------------------------------------------- 1 | ; 2 | AF221913.109-520.seq 3 | UUAAUUAGAGGGAUUGGAAGGUUCCGCUUAUGCUAACCCUAAUAUUGGGGGUCUGUUGAAAACCUCUUUAAGAUAUGCGUGUUGUUUUAUUGGCUGACUUUCAGCGCGCAUUGAGAGGAGUUGCUGCCCAGGACUAAAAAAUGUCAGCUGGGAGUCCUUCCUCUCCCUUAUUUCUGCCUCACAACCUGGACUCUUUAUUUAGCGGUGCCCCAUUUGUCGAGGCCGCAGUCAGUCUUGUUCUUAUACGCUGCUGUUGCGAAGAGUUCGUCUCUGUCAGCCUCCGGGGCAACGCCUUGAAUUUGGAGAGCCUGGGAAUGUAACAAGGGGUAGGGAAAAUAACGAGAGCUGAGUUGGCUUCUCCUGUGCUGUUCCUGAGCUGUGGAACUUGCAAUCGCAGUCGGCUCUGACACUU1 4 | -------------------------------------------------------------------------------- /data/telomerase-5/k5group57/telomerase_database-AF221924.105-538.seq: -------------------------------------------------------------------------------- 1 | ; 2 | AF221924.105-538.seq 3 | CGCGUGGCGGAUGGGGAGGCUCCAGUCUCACUAACCCUAAUGGCUGCCGCCGUGCUCCCCGCACCCGUCCGCUGUUUUAUUCGCUGACUUUCAGCGGACGGGGGGAGCCGCCUGGGGGGGAAGGGGUUUGCAAUCAAAAAACGUCAGCGACGGGUCUCCCCAGCCCAGCCCGCCCUGGGGUCUCCGUCCCCCCACGCAGCCGGGGGCCUGCCGCGGAGGCUCCCUCCGCCGCACUUCACGGAGGCCGCGGUCGGCCGGUGUCCGCCACUGCCGCCGCGAAGAGUUCGUCUCUGUCAGCCUCGGCGGCGGUGGGGAGCGAGAGGGCUCGUCCCCGCGCCGGGGACCCCAGCAGAGCAAAACGGAGCGGCGUCCUCGGCACAGCCGCCGCGCUUCCCUCAACCGUGGGAUGCGCGGACGGCGCCGCUUCGACACCC1 4 | -------------------------------------------------------------------------------- /data/telomerase-5/k5group57/telomerase_database-AF221929.92-517.seq: -------------------------------------------------------------------------------- 1 | ; 2 | AF221929.92-517.seq 3 | UGGGCCGGGAGGGGUGGUGGUCUUCCCUGUCUAACCCUAAGGUGAAGAGGACGUGGGUGCCGUGUUUUUCGCUCCCGCACGCUGUUUUUCUCGCUGACUUUCAGCGUGCAGAAAAGCCUUGGCCUACCGUCGGUUAUUGUCUAAUUAGAAGCAAACAAAAAAUGUCAGCGUGGCCGGGCCGCCCCUCCCGGAUACCUGCGGCGGCUCGUCCACCGGCCCCCGAGCCCCGCCUAGGCCGCGGCCGGCGCGGGGCUUCCCUGGAGGCGCCCAUGGCCGCCGCGAAGAGUUCGUCUCUGUCAGCUGCGGGUCGCCCGGGGGCCGCGGGAGAGUCCCAGGCCUUGGCCGCAGGGAGAGAAACGGAGCAGGUCCUCGCGCGGUGCACUCCCCUGAGCUGUGGGAAGUGCACCGGGACGGGCUCCUACAAGC1 4 | -------------------------------------------------------------------------------- /data/telomerase-5/k5group57/telomerase_database-U85256.1-451.seq: -------------------------------------------------------------------------------- 1 | ; 2 | U85256.1-451.seq 3 | GGGUUGCGGAGGGUGGGCCUGGGAGGGGUGGUGGCCAUUUUUUGUCUAACCCUAACUGAGAAGGGCGUAGGCGCCGUGCUUUUGCUCCCCGCGCGCUGUUUUUCUCGCUGACUUUCAGCGGGCGGAAAAGCCUCGGCCUGCCGCCUUCCACCGUUCAUUCUAGAGCAAACAAAAAAUGUCAGCUGCUGGCCCGUUCGCCCCUCCCGGGGACCUGCGGCGGGUCGCCUGCCCAGCCCCCGAACCCCGCCUGGAGGCCGCGGUCGGCCCGGGGCUUCUCCGGAGGCACCCACUGCCACCGCGAAGAGUUGGGCUCUGUCAGCCGCGGGUCUCUCGGGGGCGAGGGCGAGGUUCAGGCCUUUCAGGCCGCAGGAAGAGGAACGGAGCGAGUCCCCGCGCGCGGCGCGAUUCCCUGAGCUGUGGGACGUGCACCCAGGACUCGGCUCACACAUGC1 4 | -------------------------------------------------------------------------------- /data/telomerase-5/k5group58/telomerase_database-AF221911.104-513.seq: -------------------------------------------------------------------------------- 1 | ; 2 | AF221911.104-513.seq 3 | CCGCUGCGGCGGCAGGUGGGGGCUCAGUCUUUCUAACCCUAAGCGAAAUGUGACCCCUCCCCGCUGCAGCCGUCCGCUGUUUUACUCGCUGACUUUCAGCGGACGGGGGGAGCGGGUGGAGACGCCAACCAAAAAACGUCAGCGAGGGGCCCUCCCCUCCCACGCCGACCUGGGCCUGUGGUGGGGCCCGCCAGCGAAGUCCCCGCCGCCCCGCCCCGGUGAGGCCGCGGUCAGCCGGCUCGCGCCACUGCUGCCGCGAAGAGUUCGUCUCUGUCAGCCUCGGGGGCGGCCGGGGUGGAAGGGCGGGUCCCGAGCCCGUCGGCCGGGAGAGCAAACGUGAGCGGCAGCCCCUGCGCCACCGCCCUCCCCUAAGCUGUGGGGCCCGCGGUCGGGGCUGCGCUCAGACACGC1 4 | -------------------------------------------------------------------------------- /data/telomerase-5/k5group58/telomerase_database-AF221914.112-589.seq: -------------------------------------------------------------------------------- 1 | ; 2 | AF221914.112-589.seq 3 | GUCCAGCUGCGGGGGAGACAGUGUCGCUCUCUAACCCUAAUGUGGGGGCAACGCGGGCCCUUUGUUUAAAGUCCCGCUGUCGGGAGCCCUCGCUGUUUUCUUGGCUAACUUUCAGCGAUGGCGAAAGGGCCCAGCAAAGGUUGGGAAGCGUGAUUUAUUGUUGGUGGGCAGAGAGAAAAAAGUUUAAGCCGCGGCCUCCUCCCCGGCGGCCCAGGACCCCCUGUUGCAACGUGCGGAAUGGCGGCCUCGGCCCCCCUGCUGCACGCCCAGCCGUUUAGGCCGCGGUCAGCGCCGGUUUCCACGCCAGUGUGGGGCUUGAUGCUGUCGCGAAGAGUUCGUCUCUGUUAGCCUGGCAGGGUGUGCUACGCAGGGUCGGGGUGCGGAGGGCAGGGAGAUUAAAUAGCUUGACCAGACGCUAUGGCCUGUACUGCAUUUCCCAGAGCUGUGGGACCUGCAAAUCUGCGCUGGUCAUACAUUU1 4 | -------------------------------------------------------------------------------- /data/telomerase-5/k5group58/telomerase_database-AF221920.99-541.seq: -------------------------------------------------------------------------------- 1 | ; 2 | AF221920.99-541.seq 3 | GGGUUGCGGAGGGUGGGCCCAGGAGCGGUGGCGGCCAUUUUUUAAGUCUAACCCUAACUGAAAGAGGCGUAGGCGCUGCGCUUUUGCUUCACGCGCGCUGUUUUUCUCGCUGACUUUCAGCGGGCGGAAAAGCCUCGGCCUACCGCCAUCCACCAUCCAGUCUGAAACAAACAAAAAAUGUCAGCCUCUGGCUCGCUCACUGCUCCCGGGAACCUGCGGUGGUUCGCCCGCCCAGCCCCCGCGCCCCGCCUGAGGCCGCGGUCGGCCCGGGGCUUCUCCGGAGGCGCCCAUUGCCGCCGCGAAGAGUUGGGCUCUGUCAGCCGCGGGUCCCUCGGGGGCCAAGGCGAGGCUCUGACCGCAGGGAAAGGAACGGAGUUGGUCCCCGCGCGCUGUGCGCUUCCCUAAGCUGUGGGCUGUGCACCUGGGACUCGGCUCAGACACUU1 4 | -------------------------------------------------------------------------------- /data/telomerase-5/k5group58/telomerase_database-AF221921.98-548.seq: -------------------------------------------------------------------------------- 1 | ; 2 | AF221921.98-548.seq 3 | GGCGGGUUGCGGGAGCUGCGAGCGGCCGUCUCGUCUAACCCUAAAGAGAAAGGCGUAGGUGCUUGGCCUUGGCGACUCGCCCGCUGUUUUUUGGCUGGCUUUCAGCGGGUGAAGAGGCCCAAGACCUACCGCCACCCACCGUCUAGUGUCUUAAGGGCACAAAGUCCUGCCCGCCACCCUUCGAGGAGCGAAACCCAAAAAAGUCAGCCCCUGGCCGCCUCUCGCCCUCUCGCAACCCGCCUCCGUCCCAGCCUCCAUCCCCGCCCCAGGCCGCGGUCGGUCCGGGCUUCUUCGGAAGUCCCGUUGCCGUCGCGAAGAGUUCGCCUCUGUCAGCCGCGGGGCUUGGGGCCAGGGACGGGACCCUGUCCGCAGGGAGAGAAACUGGAGCCGGGCCCUCCACGGUGCCUCCCCGAGCUGUGGGAUCUGCACCCGGGACUCGAACCCUACACUU1 4 | -------------------------------------------------------------------------------- /data/telomerase-5/k5group58/telomerase_database-AF221931.99-541.seq: -------------------------------------------------------------------------------- 1 | ; 2 | AF221931.99-541.seq 3 | GGGUUGCGGAGGGUGGGCUCGGGAGGGGUGGCGGUCAUUUUCUGUCUAACCCUAACUGAAACGGGCGUAGGCGCUGCGCUUUUGUUCCCCGCACGCUGUUUUUCUCGCUGACUUUCAGCGGGCGGAAAAGCCUUGGCCUACUGCCACACACCAUCCAGUUUGGAGCAAACAAAAAAUGUCAGCGGCUGGCCUGCUCGCCCCUCCCGGGAGCCUGCGGCGACUCGCCCGCUUAGCCCCCGCAUCCCGCCUGGAGGCCGCGGUCGGCCCGGGGCUUCUCCGGAGGCACCCAUUGCCGUCGCGAAGAGUUGGGCUCUGUCAGCCGCGGGACCCUUGGGGGCCAAGGGCGAGGCUCUGGCCGCAGGGAGAGAAACGGAGCGGGUCCCCUCGCGCGGUGCGCUUCCCUGAGCUGUGGGACUUGCACCCGGGACUAGGCUCACACACAC1 4 | -------------------------------------------------------------------------------- /data/telomerase-5/k5group59/telomerase_database-AF147806.247-692.seq: -------------------------------------------------------------------------------- 1 | ; 2 | AF147806.247-692.seq 3 | ACACGUGGCGGGUGGAAGGCUCCGCUGUGUCUAACCCUAAUCGGAGGUAUUGAUGGUACUGUCGCCGCGCUCCCUCCGCCCGCUGUUUACUCGCUGACUUUCAGCGGGCUAGGGGAGCCGCCCCAGGGGGCGCCGCGGGGGGGAGGGGGUGGGGCGGACGCGGGAGAAAGGACCGAAAGGGGCUCCACGGCAAACAAAAAAAAAAAAACGUCAGCGAGGGGUCCUCUCGCCCCCAUCCGCCCUGGGGUCCUCGCCCGCAGGCCGCGGUCGGCCGGCACCCGCCAUUGCCGCCGCGAAGAGUUCGCCUCUGUCAGCCUCGGCGGGGCCCGGGAGAUGCGGAGCGCGGCCCCGCGCCCCCAGCAGAGCAACACGGGAGCGGCGCCCCCGGGGCAACCCCCGCGCCCCCCUGCGCCGUGGGGCGCGCGGACGGCGUCGCUCCCACACGC1 4 | -------------------------------------------------------------------------------- /data/telomerase-5/k5group59/telomerase_database-AF221919.107-614.seq: -------------------------------------------------------------------------------- 1 | ; 2 | AF221919.107-614.seq 3 | GUGCGGACGGGCUGCGUGGGCGGGUCGGUCCGUCCUGGCACAUCUAACCCUAAAUGCGCGCUGGUUGAAGUGGCUUCUCCUGGGCGAUCGCUCGCUGUUUUUGUGGCUGGCUUUCAGCGGGCUGGAGGAGCCGGGAGCGGAGGCGGAGGACCGAGCCAAAAACGUCAGCCGAGGCCGGGCGGCCCCGCUCGUGGCCCGUCCGCACUGUCCGGGCCAGGCCCCGGCCCGAACCCCCUGGAGACAACUCCCGCAGGGUCUGCGCUGCGCCGCGGAGCCCCGGCUGCCCACGUAGAGGCGGCGGCCGUCUCGGGGCCCCUGCGUGCGGGGCGCCCACUGCGGCCGCCAAGAGCUCGUCUCUGUCAGCCUCGGGUGCACGUGGGCCCGCGGUCGAGCCCUAAGGCCGGGCGUGGGGCUGGGGUCGCAGGGAGAGUAACCGUGAGCCGGCGCCCAGCCUUCAGGGCGCUCCCUCGAGCUAUGGGAGCUGCCCCCGGGCACGGCUCGGACACCC1 4 | -------------------------------------------------------------------------------- /data/telomerase-5/k5group59/telomerase_database-AF221934.121-565.seq: -------------------------------------------------------------------------------- 1 | ; 2 | AF221934.121-565.seq 3 | UCUCUCCGGAGAGGGGCGGUUUCUCUGUCUUCUAACCCUAAUGCGGUGCUUCGGCAGAAGCUCUCCACUGCGUACGCUCACUGUUUUUCUAGCUAACUUUCAGUGAGCAGGGAGAGCGAAGUCCAGUUUCACGACAACGGAGAAAAAAUGUUAGCUGGGGAACGUCCCUUUCCCGAGAGCCCGCGCCGUCCUUUUUCUUCCUCGGGCCCGUUGGCAUAGCCCCUGGCCUCCUCGCUCUAUAGGCCGCGGUCAGCUCGGGCCCCAGCUCCGGCAGGGGUUCCACUGCUGCCGCGAAGAGUUCGCCUCUGUCAGCCUUGAGGUGGCCGGGAUAGAAUAGGCGGGCUCGCGGCAGCGCGCGGGAAAGAGCAAAUGGUGAACUGGGUGCCUGUUGGGGUCGCGUCCCUGAAGAGUGGGAAGUGCGAUCUGUGUUCCUGUUCAGACACAC1 4 | -------------------------------------------------------------------------------- /data/telomerase-5/k5group59/telomerase_database-AF221937.99-545.seq: -------------------------------------------------------------------------------- 1 | ; 2 | AF221937.99-545.seq 3 | GGGUUGAGAAUGGUGGGCCGGGAGGGGAGGUGGGCAUGUUUUGUCUAACCCUAACUAGGAGGAGGACGUAGGCGCCGUGCUUUUGUUCCCCGCGCGCUGUUUUUCUCGCUGACUUUCAGCGUGCGGAAAAGCCUUGGCCUGCCGUCGACCACUGUCUAAUUAAAAGCAAACAAAAAAUGUCAGCGUGGCCGGUCCGCCCCUCCCGGGUACCUGCGGCAGCUCGCCCGGCUGGCCCCCGAGCCCCGCCCAGGGCCACGGCUGGCGCGGGGCUUCUCCGGGAGCGCCAUGGCCGCCGCGAAGAGUUCGUCUCUGUCAGCCGCGGGUCGCGCGGGGGCCGCGGGGGAGUCCUAGGCCGAGUGGCCGCAGGAAGAGAAACGGAGCCUGUCCCUGUGCACGGGGCGCUUCUCUGAGCUGUGGGAAGUGCCCCGAGACUCGGCUCCUACAAGC1 4 | -------------------------------------------------------------------------------- /data/telomerase-5/k5group59/telomerase_database-AY312571.605-1069.seq: -------------------------------------------------------------------------------- 1 | ; 2 | AY312571.605-1069.seq 3 | ACGCGUGGCGGGUGGAAGGCUCCGCUGUGCCUAACCCUAAUCGGGGGAAUUGAUGGUGCUGUCGCCGCGCUCCCUCCGCCCGCCCGCUGUUUUACUCGCUGACUUUCAGCGGGCGAGAGGAGCCGCCCCGGGGGGGAGGCGGGCGGCGGGAGGGGGCCGGGGCGCCGCGGCGGUGGGGGUCGGGGGGGGGAGAGAAAGGGCCGAAAGGGGCUCCGCGGCCAAAAAAACGUCAGCGAGGGGUCCGCUCGCCCCGAUCCGCCCUGGGGUCCCCGCUCGCGUGGCCGCGGUCGGCCGGCACCCGCCAUUGCCGCCGCGAAGAGUUCGCCUCUGUCAGCCUCGGCGGCGCGCGGGAGGUGCGGCGCGCGGCCCCGCGCCCCCAGCAGAGCAAACGGGAGCGGCGCCCCCGGGGUAACCCCCGCGCUCCCCUGCGCCGUGGGGCGCGCGGACGGCGUCGCUCCCACACGC1 4 | -------------------------------------------------------------------------------- /input.fasta: -------------------------------------------------------------------------------- 1 | >Babe.bige._GSP-5866.seq 2 | ACCCGGCUUUUGCUGUAACUCUUCUGAGGGGUGCUGGCUUGAACCCAGUGGGCUGUCAUGCUGGCGCGUCCUUGCGCUGGGCUGUCUGGCGCGGGCGGGAGUCGUCCUUGGUGGCCUUCCGUAGGGGAGGCUUCCGGGUCGUUGAAUGCGGCGUACCGCUUCAGGCUGGCAACAGAGCAGAGAUAAGCUUCAGCUUCCGCUACGCGGCAGACCGCAGCCCGCGCUGCUCGCAGUCCAUCAUCGUCAGGCCCCCCACCGGUGAACUUGCCCGCUAUUUUUU 3 | >Enta.hist._AF487684.seq 4 | GAUCCUAUCAUAUUUAUCAACGUUUGAGACUACCUCAUACCAUAUCUUCGUACUUCAUUACUAGAUAUACGUAGGUAGAUUUAGUGCGGAAGUAACGAACAGGGUACUGCGUGAGGCCGGUUACGGAGCAACGAAAACCUGUCUACGAUGAUAGACCUGGGUUGAUAUGGAUGUCAAGUUAAUACCUAUGCUAGUAUUGGAACUAAUUUU 5 | >Leis.infa._AM502223.seq 6 | GCCGGAGCUCAGCUCUGUAACCGUCGGGGGCUAAUCAGGCUUAGCGGGGAGGACGUGGACCAGCGAGGGUGACGCGCUGCGUUGACGUGGUGCUCUGCUUGGCUGUGUGUCGGUGUGACCCGCACCCCUGCAGAGGGGUGGCGCGGGCCCGCCGUUGAAGCGAGGGAACCGGGUCAGGCCGGAAACGGAGCAGCCCACCCCGCGCACGUCCGCCGUUGCAGAAUCACACCGCGGAGCAUGUCCGCACUUGAGCCCCACGCCUCGUCGCAAAGCCUUUUU 7 | >Tetr.ther._X56981.seq 8 | GCCAGGGUAGCAAUACCUGUGUCUAUAUGUGGCAUAAACAAUGUAGGUUGUGAUAGAUAGGAUAUGAGAGUUUGAUGAGACAGUUUGCUAAGAGUGUGCCCGCUCCAAACAAUGAGUUGCUAUGGUGGUAACCUAGUAAUAGGACUCCACCAGGGCAUUAAAGAGCUAAGGAAACGCCUCAGGCUGGCAACAGAACAGGGAAAACUUGCCGCUUGUUGUGGUGGAAGGAUAACAUACUCAUUAACUGUCAAACUAAUCGGUUCUACUAUCAAAGCCAGACAUU 9 | >Tryp.bruc._AF047723.seq 10 | AGCCGGAGCGCAUUGCUCUGUAACCUUCGGGGGCUGAUCCCGCUUAGCGGGGACGUCUUGGACAAGCGGGGGUUCUGUUGCGUUGACUUGGUGUUCUGCUUGGUUGCGUGUCGGUGUUGAGGUCGCCACUGUAGAGAGGCGUUCUCGCGCCGUUAAAGUGGGGGGAACGGGUCAGGCCGGUGACGGAGCAGCCCACCUUGCGCACGUUCCCGUUGCAGAAGCACACCGAGGAGCAUCUCAGGACUUUGCGCCCCAAGUGUCGUCGCGAGGCGG 11 | -------------------------------------------------------------------------------- /src/ConfigParser.h: -------------------------------------------------------------------------------- 1 | /* 2 | *ConfigParser.h* 3 | header file for ConfigParser.cpp. 4 | 5 | author: Sizhen Li 6 | edited by: 10/2020 7 | */ 8 | 9 | #ifndef CONFIG_PARSER_H 10 | #define CONFIG_PARSER_H 11 | 12 | #include 13 | #include 14 | // #include "utils/ParseCommandLine.h" 15 | #include "utils/common_utils.h" 16 | #include "utils/structure_object.h" 17 | 18 | class ConfigParser { 19 | public: 20 | string mode; 21 | string OutAln; 22 | string conf_file; 23 | string AlnFormat; 24 | double percent; 25 | double meaGamma; 26 | double threshold; 27 | double turboGamma; 28 | double temperature; 29 | double turboIterations; 30 | int windowSize; 31 | int ColumnNumber; 32 | int pkIterations; 33 | int maxStructures; 34 | int minHelixLength; 35 | vector sequenceFiles, outputCtFiles, outputDotFiles, outputPfsFiles, shapeFiles, outputBppFiles; 36 | vector *fasta_sequences; 37 | 38 | ConfigParser(); 39 | void ParseConfig(int argc, char** argv); 40 | 41 | // linearturbofold 42 | int hmmbeam; 43 | int ckybeam; 44 | bool verbose; 45 | bool saveBpps; 46 | bool savePfs; 47 | }; 48 | 49 | #endif -------------------------------------------------------------------------------- /src/LinearPartition/.gitattributes: -------------------------------------------------------------------------------- 1 | *.cpp linguist-language=c++ 2 | *.h linguist-language=c++ -------------------------------------------------------------------------------- /src/LinearPartition/AUTHORS: -------------------------------------------------------------------------------- 1 | Liang Huang (all parts) 2 | He Zhang (all parts) 3 | -------------------------------------------------------------------------------- /src/LinearPartition/LICENSE: -------------------------------------------------------------------------------- 1 | Disclaimer and Copyright 2 | 3 | The programs, library and source code of the LinearPartition Package are free 4 | software. They are distributed in the hope that they will be useful 5 | but WITHOUT ANY WARRANTY; without even the implied warranty of 6 | MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. 7 | 8 | Permission is granted for research, educational, and commercial use 9 | and modification so long as 1) the package and any derived works are not 10 | redistributed for any fee, other than media costs, 2) proper credit is 11 | given to the authors. 12 | 13 | corresponding author: Liang Huang 14 | 15 | If you want to include this software in a commercial product, please contact 16 | the corresponding author. 17 | -------------------------------------------------------------------------------- /src/LinearPartition/Makefile: -------------------------------------------------------------------------------- 1 | ################################ 2 | # Makefile 3 | # 4 | # author: He Zhang 5 | # edited by: 03/2019 6 | ################################ 7 | 8 | CC=g++ 9 | DEPS=src/bpp.cpp src/LinearPartition.h src/Utils/energy_parameter.h src/Utils/feature_weight.h src/Utils/intl11.h src/Utils/intl21.h src/Utils/intl22.h src/Utils/utility_v.h src/Utils/utility.h 10 | CFLAGS=-std=c++11 -O3 11 | .PHONY : clean linearpartition 12 | objects=bin/linearpartition_v bin/linearpartition_c 13 | 14 | linearpartition: src/LinearPartition.cpp $(DEPS) 15 | chmod +x linearpartition 16 | mkdir -p bin 17 | $(CC) src/LinearPartition.cpp $(CFLAGS) -Dlpv -o bin/linearpartition_v 18 | $(CC) src/LinearPartition.cpp $(CFLAGS) -o bin/linearpartition_c 19 | 20 | clean: 21 | -rm $(objects) -------------------------------------------------------------------------------- /src/LinearPartition/testseq: -------------------------------------------------------------------------------- 1 | UGAGUUCUCGAUCUCUAAAAUCG 2 | AAAACGGUCCUUAUCAGGACCAAACA 3 | AUUCUUGCUUCAACAGUGUUUGAACGGAAU 4 | UCGGCCACAAACACACAAUCUACUGUUGGUCGA 5 | GUUUUUAUCUUACACACGCUUGUGUAAGAUAGUUA 6 | -------------------------------------------------------------------------------- /src/data_tables/autodetect.txt: -------------------------------------------------------------------------------- 1 | ** DO NOT DELETE OR CHANGE THE NAME OF THIS FILE ** 2 | 3 | This file is used to aid RNAstructure programs in auto-detecting the location of the thermodynamic parameter files. Specifically, if one of the standard search paths (e.g. ./data_tables or ../data_tables) contains a file called "autodetect.txt" it is assumed that it is a valid location for thermodynamic parameter files. 4 | 5 | So if you need to delete or rename this file, you must make a corresponding change to the DATAPATH_VERIFY_FILE constant in RNAstructure/src/defines.h -------------------------------------------------------------------------------- /src/data_tables/b-test.dynalignmiscloop.dg: -------------------------------------------------------------------------------- 1 | # Miscellaneous free energy rules 2 | # ------------------------------- 3 | 4 | # Extrapolation for large loops based on polymer theory 5 | # internal, bulge or hairpin loops > 30: dS(T)=dS(30)+param*ln(n/30) 6 | # --> 7 | 1.079 8 | 9 | # asymmetric internal loops: the ninio equation 10 | # the maximum correction 11 | # --> 12 | 3.0 13 | 14 | # the f(m) array (see Ninio for details) 15 | # --> 16 | .6 .6 .6 .6 17 | 18 | # multibranched loops 19 | # offset, per nuc penalty, helix penalty 20 | # --> 21 | 9.3 0.0 -0.9 22 | 23 | # efn2 multibranched loops 24 | # offset, per nuc penalty, helix penalty 25 | # --> 26 | 9.3 0.0 -0.9 27 | 28 | # miscloop asym 29 | # --> 30 | 0.9 31 | 32 | # multiloop strain 33 | # --> 34 | 3.1 35 | 36 | # terminal AU penalty 37 | # --> 38 | 0.5 39 | 40 | # bonus for GGG hairpin 41 | # --> 42 | -2.2 43 | 44 | # c hairpin slope 45 | # --> 46 | 0.3 47 | 48 | # c hairpin intercept 49 | # --> 50 | 1.6 51 | 52 | # c hairpin of 3 53 | # --> 54 | 1.5 55 | 56 | # Intermolecular initiation free energy 57 | # --> 58 | 4.1 59 | 60 | # Bonus for Single C bulges adjacent to C 61 | # --> 62 | -0.9 63 | -------------------------------------------------------------------------------- /src/data_tables/b-test.hexaloop.dg: -------------------------------------------------------------------------------- 1 | # Seq Energy 2 | # ------------- 3 | ACAGUGCU 2.9 4 | BCAGUGCU 2.9 5 | ACBGUGCU 2.9 6 | BCBGUGCU 2.9 7 | ACAGUGAU 3.6 8 | BCAGUGAU 3.6 9 | ACBGUGAU 3.6 10 | ACAGUGBU 3.6 11 | BCBGUGAU 3.6 12 | BCAGUGBU 3.6 13 | ACBGUGBU 3.6 14 | BCBGUGBU 3.6 15 | ACAGUGUU 1.8 16 | BCAGUGUU 1.8 17 | ACBGUGUU 1.8 18 | BCBGUGUU 1.8 19 | ACAGUACU 2.8 20 | BCAGUACU 2.8 21 | ACBGUACU 2.8 22 | ACAGUBCU 2.8 23 | BCBGUACU 2.8 24 | BCAGUBCU 2.8 25 | ACBGUBCU 2.8 26 | BCBGUBCU 2.8 27 | -------------------------------------------------------------------------------- /src/data_tables/b-test.hexaloop.dh: -------------------------------------------------------------------------------- 1 | # Seq enthalpy 2 | # ------------- 3 | ACAGUGCU -12.8 4 | BCAGUGCU -12.8 5 | ACBGUGCU -12.8 6 | BCBGUGCU -12.8 7 | ACAGUGAU -11.4 8 | BCAGUGAU -11.4 9 | ACBGUGAU -11.4 10 | ACAGUGBU -11.4 11 | BCBGUGAU -11.4 12 | BCAGUGBU -11.4 13 | ACBGUGBU -11.4 14 | BCBGUGBU -11.4 15 | ACAGUGUU -15.4 16 | BCAGUGUU -15.4 17 | ACBGUGUU -15.4 18 | BCBGUGUU -15.4 19 | ACAGUACU -16.8 20 | BCAGUACU -16.8 21 | ACBGUACU -16.8 22 | ACAGUBCU -16.8 23 | BCBGUACU -16.8 24 | BCAGUBCU -16.8 25 | ACBGUBCU -16.8 26 | BCBGUBCU -16.8 27 | -------------------------------------------------------------------------------- /src/data_tables/b-test.miscloop.dg: -------------------------------------------------------------------------------- 1 | # Miscellaneous free energy rules 2 | # ------------------------------- 3 | 4 | # Extrapolation for large loops based on polymer theory 5 | # internal, bulge or hairpin loops > 30: dS(T)=dS(30)+param*ln(n/30) 6 | # --> 7 | 1.079 8 | 9 | # asymmetric internal loops: the ninio equation 10 | # the maximum correction 11 | # --> 12 | 3.0 13 | 14 | # the f(m) array (see Ninio for details) 15 | # --> 16 | .6 .6 .6 .6 17 | 18 | # multibranched loops 19 | # offset, per nuc penalty, helix penalty 20 | # --> 21 | 9.3 -.0 -0.6 22 | 23 | # efn2 multibranched loops 24 | # offset, per nuc penalty, helix penalty 25 | # --> 26 | 9.3 0.0 -0.6 27 | 28 | # multiloop asym 29 | # --> 30 | 0.9 31 | 32 | # multiloop strain 33 | # --> 34 | 3.1 35 | 36 | # terminal AU penalty 37 | # --> 38 | 0.5 39 | 40 | # bonus for GGG hairpin 41 | # --> 42 | -2.2 43 | 44 | # c hairpin slope 45 | # --> 46 | 0.3 47 | 48 | # c hairpin intercept 49 | # --> 50 | 1.6 51 | 52 | # c hairpin of 3 53 | # --> 54 | 1.5 55 | 56 | # Intermolecular initiation free energy 57 | # --> 58 | 4.1 59 | 60 | # Bonus for Single C bulges adjacent to C 61 | # --> 62 | -0.9 63 | -------------------------------------------------------------------------------- /src/data_tables/b-test.tloop.dg: -------------------------------------------------------------------------------- 1 | # Seq Energy 2 | # ------------- 3 | CUACGG 2.8 4 | CUBCGG 2.8 5 | CUCCGG 2.7 6 | CUUCGG 3.7 7 | CUUUGG 3.7 8 | CCAAGG 3.3 9 | CCBAGG 3.3 10 | CCABGG 3.3 11 | CCBBGG 3.3 12 | CCCAGG 3.4 13 | CCCBGG 3.4 14 | CCGAGG 3.5 15 | CCGBGG 3.5 16 | CCUAGG 3.7 17 | CCUBGG 3.7 18 | CCACGG 3.7 19 | CCBCGG 3.7 20 | CCGCGG 3.6 21 | CCUCGG 2.5 22 | CUAAGG 3.6 23 | CUBAGG 3.6 24 | CUABGG 3.6 25 | CUBBGG 3.6 26 | CUCAGG 3.7 27 | CUCBGG 3.7 28 | CUUAGG 3.5 29 | CUUBGG 3.5 30 | CUGCGG 2.8 31 | CAACGG 5.5 32 | CBACGG 5.5 33 | CABCGG 5.5 34 | CBBCGG 5.5 35 | -------------------------------------------------------------------------------- /src/data_tables/b-test.tloop.dh: -------------------------------------------------------------------------------- 1 | # Seq Enthalpy 2 | # ------------- 3 | CUACGG -10.7 4 | CUBCGG -10.7 5 | CUCCGG -12.9 6 | CUUCGG -15.3 7 | CUUUGG -6.8 8 | CCAAGG -10.3 9 | CCBAGG -10.3 10 | CCABGG -10.3 11 | CCBBGG -10.3 12 | CCCAGG -8.9 13 | CCCBGG -8.9 14 | CCGAGG -6.6 15 | CCGBGG -6.6 16 | CCUAGG -3.5 17 | CCUBGG -3.5 18 | CCACGG -3.3 19 | CCBCGG -3.3 20 | CCGCGG -7.5 21 | CCUCGG -13.9 22 | CUAAGG -7.6 23 | CUBAGG -7.6 24 | CUABGG -7.6 25 | CUBBGG -7.6 26 | CUCAGG -6.6 27 | CUCBGG -6.6 28 | CUUAGG -6.2 29 | CUUBGG -6.2 30 | CUGCGG -10.7 31 | CAACGG 6.9 32 | CBACGG 6.9 33 | CABCGG 6.9 34 | CBBCGG 6.9 35 | -------------------------------------------------------------------------------- /src/data_tables/b-test.triloop.dg: -------------------------------------------------------------------------------- 1 | # Seq Energy 2 | # ------------- 3 | CAACG 6.8 4 | CBACG 6.8 5 | CABCG 6.8 6 | CBBCG 6.8 7 | GUUAC 6.9 8 | GUUBC 6.9 9 | -------------------------------------------------------------------------------- /src/data_tables/b-test.triloop.dh: -------------------------------------------------------------------------------- 1 | # Seq Enthalpy 2 | # ------------- 3 | CAACG 23.7 4 | CBACG 23.7 5 | CABCG 23.7 6 | CBBCG 23.7 7 | GUUAC 10.8 8 | GUUBC 10.8 9 | -------------------------------------------------------------------------------- /src/data_tables/description.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/LinearFold/LinearTurboFold/445808976857df01c57e5d9302a0bbee10515bb5/src/data_tables/description.txt -------------------------------------------------------------------------------- /src/data_tables/dists/CMCTdist.txt: -------------------------------------------------------------------------------- 1 | # Gamma mixture parameters for RNAstructure. First set of parameters is for paired, second for unparied. Order of parameters is: shape1, location1, scale1, shape2, location2, scale2, weight1, weight2 2 | 3.521 0.000 0.001 0.421 0.000 0.424 0.000 1.000 3 | 1.169 0.000 0.117 0.765 0.000 1.903 0.538 0.462 -------------------------------------------------------------------------------- /src/data_tables/dists/DMSdist.txt: -------------------------------------------------------------------------------- 1 | # Gamma mixture parameters for RNAstructure. First set of parameters is for paired, second for unparied. Order of parameters is: shape1, location1, scale1, shape2, location2, scale2, weight1, weight2 2 | 9.194 0.000 0.001 1.090 0.000 0.113 0.000 1.000 3 | 9.755 0.000 0.015 1.275 0.000 0.443 0.103 0.897 -------------------------------------------------------------------------------- /src/data_tables/dists/DMSdist_nt.txt: -------------------------------------------------------------------------------- 1 | # Gamma mixture parameters for RNAstructure. Listed in order: {paired, single-stranded} for A,C,G,U. Order of parameters is shape1, location1, scale1, shape2, location2, scale2, weight1, weight2 2 | 2.946859 0.0 0.01618898 1.097604 0.0 0.1474893 0.5306255 0.4693745 3 | 1.042704 0.0 0.4471318 5.252798 0.0 0.09562894 0.5862106 0.4137894 4 | 1.443028 0.0 0.001371612 0.5398256 0.0 0.1245133 0.5024876 0.4975124 5 | 0.7414619 0.0 0.4728517 2.941811 0.0 0.2213694 0.5173285 0.4826715 6 | 0.5907255 0.0 0.08339519 0.6442929 0.0 0.4183495 0.9210386 0.07896137 7 | 2.61078 0.0 0.06705969 0.4916115 0.0 0.6967055 0.2574648 0.7425352 8 | 1.992486 0.0 0.0006675828 0.4664866 0.0 0.2047313 0.294773 0.705227 9 | 0.8133309 0.0 0.3887736 1.927522 0.0 0.4016372 0.4689788 0.5310212 10 | -------------------------------------------------------------------------------- /src/data_tables/dists/SHAPEdist.txt: -------------------------------------------------------------------------------- 1 | # Gamma mixture parameters for RNAstructure. First set of parameters is for paired, second for unparied. Order of parameters is: shape1, location1, scale1, shape2, location2, scale2, weight1, weight2 2 | 12.475 0.000 0.008 1.488 0.000 0.117 0.317 0.683 3 | 3.336 0.000 0.065 1.299 0.000 0.575 0.457 0.543 -------------------------------------------------------------------------------- /src/data_tables/dna.dynalignmiscloop.dg: -------------------------------------------------------------------------------- 1 | #Miscellaneous free energy rules 2 | #------------------------------- 3 | 4 | #Extrapolation for large loops based on polymer theory 5 | #internal, bulge or hairpin loops > 30: dS(T)=dS(30)+param*ln(n/30) 6 | #--> 7 | 1.079 8 | 9 | #asymmetric internal loops: the ninio equation 10 | #the maximum correction 11 | #--> 12 | 3.0 13 | 14 | #the f(m) array (see ninio for details) 15 | #--> 16 | .4 .3 .2 .1 17 | 18 | #multibranched loops 19 | #offset, free base penalty, helix penalty 20 | #--> 21 | 3.0 .2 .2 22 | 23 | #efn2 multibranched loops 24 | #offset, free base penalty, helix penalty 25 | #--> 26 | 3.0 .2 .2 27 | 28 | #terminal AU penalty 29 | #--> 30 | 0.0 31 | 32 | #bonus for GGG hairpin 33 | #--> 34 | 0.0 35 | 36 | #c hairpin slope 37 | #--> 38 | 0.0 39 | 40 | #c hairpin intercept 41 | #--> 42 | 0.0 43 | 44 | #c hairpin of 3 45 | #--> 46 | 0.0 47 | 48 | #Intermolecular initiation free energy 49 | #--> 50 | 1.0 51 | 52 | #GAIL Rule (Grossly Asymmetric Interior Loop Rule) (on/off <-> 1/0) 53 | #--> 54 | 0 55 | -------------------------------------------------------------------------------- /src/data_tables/dna.dynalignmiscloop.dh: -------------------------------------------------------------------------------- 1 | # Miscellaneous free energy rules 2 | # ------------------------------- 3 | 4 | # Extrapolation for large loops based on polymer theory 5 | # internal, bulge or hairpin loops > 30: dS(T)=dS(30)+param*ln(n/30) 6 | # --> 7 | 1. 8 | 9 | # asymmetric internal loops: the ninio equation 10 | # the maximum correction 11 | # --> 12 | 0.0 13 | 14 | # the f(m) array (see ninio for details) 15 | # --> 16 | .0 .0 .0 .0 17 | 18 | # multibranched loops 19 | # offset, free base penalty, helix penalty 20 | # --> 21 | 0.0 .0 0.0 22 | 23 | # efn2 multibranched loops 24 | # offset, free base penalty, helix penalty 25 | # --> 26 | 0.0 .0 0.0 27 | 28 | # miscloop asym 29 | # --> 30 | 0.0 31 | 32 | # multiloop strain 33 | # --> 34 | 0.0 35 | 36 | # terminal AU penalty 37 | # --> 38 | 3.2 39 | 40 | # bonus for GGG hairpin 41 | # --> 42 | 0.0 43 | 44 | # c hairpin slope 45 | # --> 46 | 0.0 47 | 48 | # c hairpin intercept 49 | # --> 50 | 0.0 51 | 52 | # c hairpin of 3 53 | # --> 54 | 0.0 55 | 56 | # Intermolecular initiation free energy 57 | # --> 58 | -7.2 59 | 60 | # GAIL Rule (Grossly Asymmetric Interior Loop Rule) (on/off <-> 1/0) 61 | # --> 62 | 0 63 | 64 | # Bonus for Single C bulges adjacent to C 65 | # --> 66 | 0.0 67 | 68 | -------------------------------------------------------------------------------- /src/data_tables/dna.hexaloop.dg: -------------------------------------------------------------------------------- 1 | # Seq Energy 2 | # ------------- 3 | -------------------------------------------------------------------------------- /src/data_tables/dna.hexaloop.dh: -------------------------------------------------------------------------------- 1 | # Seq Energy 2 | # ------------- 3 | -------------------------------------------------------------------------------- /src/data_tables/dna.miscloop.dg: -------------------------------------------------------------------------------- 1 | # Miscellaneous free energy rules 2 | # ------------------------------- 3 | 4 | # Extrapolation for large loops based on polymer theory 5 | # internal, bulge or hairpin loops > 30: dS(T)=dS(30)+param*ln(n/30) 6 | # --> 7 | 1.079 8 | 9 | # asymmetric internal loops: the ninio equation 10 | # the maximum correction 11 | # --> 12 | 3.0 13 | 14 | # the f(m) array (see ninio for details) 15 | # --> 16 | .4 .4 .4 .4 17 | 18 | # multibranched loops 19 | # offset, free base penalty, helix penalty 20 | # --> 21 | 3.0 .2 .2 22 | 23 | # efn2 multibranched loops 24 | # offset, free base penalty, helix penalty 25 | # --> 26 | 3.0 .2 .2 27 | 28 | # miscloop asym 29 | # --> 30 | 0.0 31 | 32 | # multiloop strain 33 | # --> 34 | 0.0 35 | 36 | # terminal AU penalty 37 | # --> 38 | 0.0 39 | 40 | # bonus for GGG hairpin 41 | # --> 42 | 0.0 43 | 44 | # c hairpin slope 45 | # --> 46 | 0.0 47 | 48 | # c hairpin intercept 49 | # --> 50 | 0.0 51 | 52 | # c hairpin of 3 53 | # --> 54 | 0.0 55 | 56 | # Intermolecular initiation free energy 57 | # --> 58 | 1.0 59 | 60 | # Bonus for Single C bulges adjacent to C 61 | # --> 62 | 0.0 63 | 64 | -------------------------------------------------------------------------------- /src/data_tables/dna.miscloop.dh: -------------------------------------------------------------------------------- 1 | # Miscellaneous free energy rules 2 | # ------------------------------- 3 | 4 | # Extrapolation for large loops based on polymer theory 5 | # internal, bulge or hairpin loops > 30: dS(T)=dS(30)+param*ln(n/30) 6 | # --> 7 | 1. 8 | 9 | # asymmetric internal loops: the ninio equation 10 | # the maximum correction 11 | # --> 12 | 0.0 13 | 14 | # the f(m) array (see ninio for details) 15 | # --> 16 | .0 .0 .0 .0 17 | 18 | # multibranched loops 19 | # offset, free base penalty, helix penalty 20 | # --> 21 | 9.0 .0 0.0 22 | 23 | # efn2 multibranched loops 24 | # offset, free base penalty, helix penalty 25 | # --> 26 | 9.0 .0 0.0 27 | 28 | # miscloop asym 29 | # --> 30 | 0.0 31 | 32 | # multiloop strain 33 | # --> 34 | 0.0 35 | 36 | # terminal AU penalty 37 | # --> 38 | 3.2 39 | 40 | # bonus for GGG hairpin 41 | # --> 42 | 0.0 43 | 44 | # c hairpin slope 45 | # --> 46 | 0.0 47 | 48 | # c hairpin intercept 49 | # --> 50 | 0.0 51 | 52 | # c hairpin of 3 53 | # --> 54 | 0.0 55 | 56 | # Intermolecular initiation free energy 57 | # --> 58 | -7.2 59 | 60 | # Bonus for Single C bulges adjacent to C 61 | # --> 62 | 0.0 63 | 64 | -------------------------------------------------------------------------------- /src/data_tables/dna.tloop.dg: -------------------------------------------------------------------------------- 1 | # Seq Energy 2 | # ----------- 3 | ATTTTT -0.8 4 | ACGTGT 1.4 5 | CAAAAG 3.2 6 | CGACTG 1.3 7 | GCTTGC 3.4 8 | CGACCG 1.3 9 | -------------------------------------------------------------------------------- /src/data_tables/dna.tloop.dh: -------------------------------------------------------------------------------- 1 | # Seq Energy 2 | # ----------- 3 | ATTTTT 1.3 4 | ACGTGT -3.9 5 | CAAAAG 3.2 6 | CGACTG -2.6 7 | GCTTGC -0.3 8 | CGACCG -2.8 -------------------------------------------------------------------------------- /src/data_tables/dna.triloop.dg: -------------------------------------------------------------------------------- 1 | # Seq Energy 2 | # ------------- 3 | GGCAC 2.6 4 | CGCAG -0.2 5 | 6 | -------------------------------------------------------------------------------- /src/data_tables/dna.triloop.dh: -------------------------------------------------------------------------------- 1 | # Seq Energy 2 | # ------------- 3 | GGCAC 12.5 4 | CGCAG -2.9 5 | 6 | -------------------------------------------------------------------------------- /src/data_tables/dnadynalignmiscloop.dat: -------------------------------------------------------------------------------- 1 | Miscellaneous free energy rules 2 | ------------------------------- 3 | 4 | Extrapolation for large loops based on polymer theory 5 | internal, bulge or hairpin loops > 30: dS(T)=dS(30)+param*ln(n/30) 6 | --> 7 | 1.079 8 | 9 | asymmetric internal loops: the ninio equation 10 | the maximum correction 11 | --> 12 | 3.0 13 | 14 | the f(m) array (see ninio for details) 15 | --> 16 | .4 .3 .2 .1 17 | 18 | multibranched loops 19 | offset, free base penalty, helix penalty 20 | --> 21 | 3.0 .2 .2 22 | 23 | efn2 multibranched loops 24 | offset, free base penalty, helix penalty 25 | --> 26 | 3.0 .2 .2 27 | 28 | terminal AU penalty 29 | --> 30 | 0.0 31 | 32 | bonus for GGG hairpin 33 | --> 34 | 0.0 35 | 36 | c hairpin slope 37 | --> 38 | 0.0 39 | 40 | c hairpin intercept 41 | --> 42 | 0.0 43 | 44 | c hairpin of 3 45 | --> 46 | 0.0 47 | 48 | Intermolecular initiation free energy 49 | --> 50 | 1.0 51 | 52 | GAIL Rule (Grossly Asymmetric Interior Loop Rule) (on/off <-> 1/0) 53 | --> 54 | 0 55 | -------------------------------------------------------------------------------- /src/data_tables/dnadynalignmiscloop.dh: -------------------------------------------------------------------------------- 1 | Miscellaneous free energy rules 2 | ------------------------------- 3 | 4 | Extrapolation for large loops based on polymer theory 5 | internal, bulge or hairpin loops > 30: dS(T)=dS(30)+param*ln(n/30) 6 | --> 7 | 1. 8 | 9 | asymmetric internal loops: the ninio equation 10 | the maximum correction 11 | --> 12 | 0.0 13 | 14 | the f(m) array (see ninio for details) 15 | --> 16 | .0 .0 .0 .0 17 | 18 | multibranched loops 19 | offset, free base penalty, helix penalty 20 | --> 21 | 0.0 .0 0.0 22 | 23 | efn2 multibranched loops 24 | offset, free base penalty, helix penalty 25 | --> 26 | 0.0 .0 0.0 27 | 28 | miscloop asym 29 | --> 30 | 0.0 31 | 32 | multiloop strain 33 | --> 34 | 0.0 35 | 36 | terminal AU penalty 37 | --> 38 | 3.2 39 | 40 | bonus for GGG hairpin 41 | --> 42 | 0.0 43 | 44 | c hairpin slope 45 | --> 46 | 0.0 47 | 48 | c hairpin intercept 49 | --> 50 | 0.0 51 | 52 | c hairpin of 3 53 | --> 54 | 0.0 55 | 56 | Intermolecular initiation free energy 57 | --> 58 | -7.2 59 | 60 | GAIL Rule (Grossly Asymmetric Interior Loop Rule) (on/off <-> 1/0) 61 | --> 62 | 0 63 | 64 | Bonus for Single C bulges adjacent to C 65 | --> 66 | 0.0 67 | 68 | -------------------------------------------------------------------------------- /src/data_tables/dnahexaloop.dat: -------------------------------------------------------------------------------- 1 | Seq Energy 2 | ------------- 3 | -------------------------------------------------------------------------------- /src/data_tables/dnahexaloop.dh: -------------------------------------------------------------------------------- 1 | Seq Energy 2 | ------------- 3 | -------------------------------------------------------------------------------- /src/data_tables/dnamiscloop.dat: -------------------------------------------------------------------------------- 1 | Miscellaneous free energy rules 2 | ------------------------------- 3 | 4 | Extrapolation for large loops based on polymer theory 5 | internal, bulge or hairpin loops > 30: dS(T)=dS(30)+param*ln(n/30) 6 | --> 7 | 1.079 8 | 9 | asymmetric internal loops: the ninio equation 10 | the maximum correction 11 | --> 12 | 3.0 13 | 14 | the f(m) array (see ninio for details) 15 | --> 16 | .4 .4 .4 .4 17 | 18 | multibranched loops 19 | offset, free base penalty, helix penalty 20 | --> 21 | 3.0 .2 .2 22 | 23 | efn2 multibranched loops 24 | offset, free base penalty, helix penalty 25 | --> 26 | 3.0 .2 .2 27 | 28 | multiloop asym 29 | --> 30 | 0.0 31 | 32 | multiloop strain 33 | --> 34 | 0.0 35 | 36 | terminal AU penalty 37 | --> 38 | 0.0 39 | 40 | bonus for GGG hairpin 41 | --> 42 | 0.0 43 | 44 | c hairpin slope 45 | --> 46 | 0.0 47 | 48 | c hairpin intercept 49 | --> 50 | 0.0 51 | 52 | c hairpin of 3 53 | --> 54 | 0.0 55 | 56 | Intermolecular initiation free energy 57 | --> 58 | 1.0 59 | 60 | Bonus for Single C bulges adjacent to C 61 | --> 62 | 0.0 63 | 64 | -------------------------------------------------------------------------------- /src/data_tables/dnamiscloop.dh: -------------------------------------------------------------------------------- 1 | Miscellaneous free energy rules 2 | ------------------------------- 3 | 4 | Extrapolation for large loops based on polymer theory 5 | internal, bulge or hairpin loops > 30: dS(T)=dS(30)+param*ln(n/30) 6 | --> 7 | 1. 8 | 9 | asymmetric internal loops: the ninio equation 10 | the maximum correction 11 | --> 12 | 0.0 13 | 14 | the f(m) array (see ninio for details) 15 | --> 16 | .0 .0 .0 .0 17 | 18 | multibranched loops 19 | offset, free base penalty, helix penalty 20 | --> 21 | 9.0 .0 0.0 22 | 23 | efn2 multibranched loops 24 | offset, free base penalty, helix penalty 25 | --> 26 | 9.0 .0 0.0 27 | 28 | miscloop asym 29 | --> 30 | 0.0 31 | 32 | multiloop strain 33 | --> 34 | 0.0 35 | 36 | terminal AU penalty 37 | --> 38 | 3.2 39 | 40 | bonus for GGG hairpin 41 | --> 42 | 0.0 43 | 44 | c hairpin slope 45 | --> 46 | 0.0 47 | 48 | c hairpin intercept 49 | --> 50 | 0.0 51 | 52 | c hairpin of 3 53 | --> 54 | 0.0 55 | 56 | Intermolecular initiation free energy 57 | --> 58 | -7.2 59 | 60 | Bonus for Single C bulges adjacent to C 61 | --> 62 | 0.0 63 | 64 | -------------------------------------------------------------------------------- /src/data_tables/dnatloop.dh: -------------------------------------------------------------------------------- 1 | Seq Energy 2 | ----------- 3 | GGTCAC -22.0 4 | GGCTAC -23.1 5 | GGAAAC -15.3 6 | CTTTTG -28.0 7 | CAAAAG -19.7 8 | ATTTTT -38.9 9 | AAAAAT -32.6 10 | TTAATA -24.3 11 | GAAAAC -31.1 12 | GTAATC -26.3 13 | CTTTTG -42.4 14 | CAAAAG -22.9 15 | -------------------------------------------------------------------------------- /src/data_tables/dnatriloop.dat: -------------------------------------------------------------------------------- 1 | Seq Energy 2 | ------------- 3 | GGAAC -2.0 4 | CGAAG -2.0 5 | AGAAT -1.0 6 | TGAAA -1.0 7 | GGCAC -2.0 8 | CGCAG -2.0 9 | AGCAT -1.0 10 | TGCAA -1.0 11 | GGTAC -2.0 12 | CGTAG -2.0 13 | AGTAT -1.0 14 | TGTAA -1.0 15 | GGGAC -2.0 16 | CGGAG -2.0 17 | AGGAT -1.0 18 | TGGAA -1.0 19 | 20 | -------------------------------------------------------------------------------- /src/data_tables/dnatriloop.dh: -------------------------------------------------------------------------------- 1 | Seq Energy 2 | ------------- 3 | CGCAG -28.2 4 | CTTTG -32.3 5 | ATAAT -35.2 6 | -------------------------------------------------------------------------------- /src/data_tables/dynalignmiscloop.dat: -------------------------------------------------------------------------------- 1 | Miscellaneous free energy rules 2 | ------------------------------- 3 | 4 | Extrapolation for large loops based on polymer theory 5 | internal, bulge or hairpin loops > 30: dS(T)=dS(30)+param*ln(n/30) 6 | --> 7 | 1.079 8 | 9 | asymmetric internal loops: the ninio equation 10 | the maximum correction 11 | --> 12 | 3.0 13 | 14 | the f(m) array (see Ninio for details) 15 | --> 16 | .6 .6 .6 .6 17 | 18 | multibranched loops 19 | offset, per nuc penalty, helix penalty 20 | --> 21 | 9.3 0.0 -0.9 22 | 23 | efn2 multibranched loops 24 | offset, per nuc penalty, helix penalty 25 | --> 26 | 9.3 0.0 -0.9 27 | 28 | miscloop asym 29 | --> 30 | 0.9 31 | 32 | multiloop strain 33 | --> 34 | 3.1 35 | 36 | terminal AU penalty 37 | --> 38 | 0.5 39 | 40 | bonus for GGG hairpin 41 | --> 42 | -2.2 43 | 44 | c hairpin slope 45 | --> 46 | 0.3 47 | 48 | c hairpin intercept 49 | --> 50 | 1.6 51 | 52 | c hairpin of 3 53 | --> 54 | 1.5 55 | 56 | Intermolecular initiation free energy 57 | --> 58 | 4.1 59 | 60 | Bonus for Single C bulges adjacent to C 61 | --> 62 | -0.9 63 | -------------------------------------------------------------------------------- /src/data_tables/helix.dat: -------------------------------------------------------------------------------- 1 | DH of initiation = 3.6 2 | DS of initiation = -1.5 3 | DS penalty for symmetry = -1.4 4 | DH of terminal AU = 3.7 5 | DS of terminal AU = 10.5 6 | -------------------------------------------------------------------------------- /src/data_tables/helixdr.dat: -------------------------------------------------------------------------------- 1 | DH of initiation = 1.9 2 | DS of initiation = -3.9 3 | DS penalty for symmetry = 0.0 4 | DH of terminal AU = 0.0 5 | DS of terminal AU = 0.0 6 | -------------------------------------------------------------------------------- /src/data_tables/hexaloop.dat: -------------------------------------------------------------------------------- 1 | Seq Energy 2 | ------------- 3 | ACAGUGCU 2.9 4 | ACAGUGAU 3.6 5 | ACAGUGUU 1.8 6 | ACAGUACU 2.8 7 | -------------------------------------------------------------------------------- /src/data_tables/hexaloop.dh: -------------------------------------------------------------------------------- 1 | Seq enthalpy 2 | ------------- 3 | ACAGUGCU -12.8 4 | ACAGUGAU -11.4 5 | ACAGUGUU -15.4 6 | ACAGUACU -16.8 7 | -------------------------------------------------------------------------------- /src/data_tables/miscloop.dat: -------------------------------------------------------------------------------- 1 | Miscellaneous free energy rules 2 | ------------------------------- 3 | 4 | Extrapolation for large loops based on polymer theory 5 | internal, bulge or hairpin loops > 30: dS(T)=dS(30)+param*ln(n/30) 6 | --> 7 | 1.079 8 | 9 | asymmetric internal loops: the ninio equation 10 | the maximum correction 11 | --> 12 | 3.0 13 | 14 | the f(m) array (see Ninio for details) 15 | --> 16 | .6 .6 .6 .6 17 | 18 | multibranched loops 19 | offset, per nuc penalty, helix penalty 20 | --> 21 | 9.3 -.0 -0.6 22 | 23 | efn2 multibranched loops 24 | offset, per nuc penalty, helix penalty 25 | --> 26 | 9.3 0.0 -0.6 27 | 28 | multiloop asym 29 | --> 30 | 0.9 31 | 32 | multiloop strain 33 | --> 34 | 3.1 35 | 36 | terminal AU penalty 37 | --> 38 | 0.5 39 | 40 | bonus for GGG hairpin 41 | --> 42 | -2.2 43 | 44 | c hairpin slope 45 | --> 46 | 0.3 47 | 48 | c hairpin intercept 49 | --> 50 | 1.6 51 | 52 | c hairpin of 3 53 | --> 54 | 1.5 55 | 56 | Intermolecular initiation free energy 57 | --> 58 | 4.1 59 | 60 | Bonus for Single C bulges adjacent to C 61 | --> 62 | -0.9 63 | -------------------------------------------------------------------------------- /src/data_tables/miscloop.dh: -------------------------------------------------------------------------------- 1 | The Miscellaneous Enthalpy rules 2 | ------------------------------- 3 | 4 | Extrapolation for large loops based on polymer theory 5 | internal, bulge or hairpin loops > 30: dS(T)=dS(30)+param*ln(n/30) 6 | --> 7 | 0 8 | 9 | asymmetric internal loops: the ninio equation 10 | the maximum correction 11 | --> 12 | 0 13 | 14 | the f(m) array (see Ninio for details) 15 | --> 16 | 3.2 3.2 3.2 3.2 17 | 18 | multibranched loops 19 | offset, per nuc penalty, helix penalty 20 | --> 21 | 30.0 0.0 -2.2 22 | 23 | efn2 multibranched loops 24 | offset, per nuc penalty, helix penalty 25 | --> 26 | 30.0 0.0 -2.2 27 | 28 | multiloop asym 29 | --> 30 | 12.9 31 | 32 | multiloop strain 33 | --> 34 | 27.1 35 | 36 | terminal AU penalty 37 | --> 38 | 3.7 39 | 40 | bonus for GGG hairpin 41 | --> 42 | -14.8 43 | 44 | c hairpin slope 45 | --> 46 | 3.4 47 | 48 | c hairpin intercept 49 | --> 50 | 7.6 51 | 52 | c hairpin of 3 53 | --> 54 | 18.6 55 | 56 | Intermolecular initiation enthalpy 57 | --> 58 | 3.6 59 | 60 | Bonus for Single C bulges adjacent to C 61 | --> 62 | 0 63 | -------------------------------------------------------------------------------- /src/data_tables/pseudconst.dat: -------------------------------------------------------------------------------- 1 | This file contains constants for calculating pseudoknot penalty 2 | for SHAPEknots program. 3 | 4 | All lines are considered comments and the actual constants are read 5 | only following the arrows. The names (a, b, c2 etc) are ignored and 6 | only the order is important. 7 | 8 | Constant 'a' is the single-stranded length. It is being multiplied 9 | by unpaired nucleotide count. 10 | a is --> 6.5 11 | 12 | Constant 'b' is the nested helix length. It is being multiplied 13 | by number of internal branches. 14 | b is --> 15 15 | 16 | Constants 'c#" is the internal pseudoknot length. It is being multiplied 17 | by number of spanning helixes with length '#' nucleotides. 18 | c2 is --> 23.9 19 | c3 is --> 23.9 20 | c4 is --> 34.0 21 | c5 is --> 23.8 22 | c6 is --> 34.6 23 | c7 is --> 57.6 24 | c8 is --> 82.1 25 | c9 is --> 65.3 26 | c10 is --> 527.5 27 | c11 is --> 2446.9 28 | c12 is --> 4198.8 29 | c13 is --> 6564.3 30 | c14 is --> 12540 31 | 32 | Constant 'c15' is multiplied by number of spanning helix longer then 14 nucleotides 33 | c15 is --> 30000 34 | 35 | -------------------------------------------------------------------------------- /src/data_tables/rna.dynalignmiscloop.dg: -------------------------------------------------------------------------------- 1 | # Miscellaneous free energy rules 2 | # ------------------------------- 3 | 4 | # Extrapolation for large loops based on polymer theory 5 | # internal, bulge or hairpin loops > 30: dS(T)=dS(30)+param*ln(n/30) 6 | # --> 7 | 1.079 8 | 9 | # asymmetric internal loops: the ninio equation 10 | # the maximum correction 11 | # --> 12 | 3.0 13 | 14 | # the f(m) array (see Ninio for details) 15 | # --> 16 | .6 .6 .6 .6 17 | 18 | # multibranched loops 19 | # offset, per nuc penalty, helix penalty 20 | # --> 21 | 9.3 0.0 -0.9 22 | 23 | # efn2 multibranched loops 24 | # offset, per nuc penalty, helix penalty 25 | # --> 26 | 9.3 0.0 -0.9 27 | 28 | # miscloop asym 29 | # --> 30 | 0.9 31 | 32 | # multiloop strain 33 | # --> 34 | 3.1 35 | 36 | # terminal AU penalty 37 | # --> 38 | 0.5 39 | 40 | # bonus for GGG hairpin 41 | # --> 42 | -2.2 43 | 44 | # c hairpin slope 45 | # --> 46 | 0.3 47 | 48 | # c hairpin intercept 49 | # --> 50 | 1.6 51 | 52 | # c hairpin of 3 53 | # --> 54 | 1.5 55 | 56 | # Intermolecular initiation free energy 57 | # --> 58 | 4.1 59 | 60 | # Bonus for Single C bulges adjacent to C 61 | # --> 62 | -0.9 63 | -------------------------------------------------------------------------------- /src/data_tables/rna.hexaloop.dg: -------------------------------------------------------------------------------- 1 | # Seq Energy 2 | # ------------- 3 | ACAGUGCU 2.9 4 | ACAGUGAU 3.6 5 | ACAGUGUU 1.8 6 | ACAGUACU 2.8 7 | -------------------------------------------------------------------------------- /src/data_tables/rna.hexaloop.dh: -------------------------------------------------------------------------------- 1 | # Seq enthalpy 2 | # ------------- 3 | ACAGUGCU -12.8 4 | ACAGUGAU -11.4 5 | ACAGUGUU -15.4 6 | ACAGUACU -16.8 7 | -------------------------------------------------------------------------------- /src/data_tables/rna.miscloop.dg: -------------------------------------------------------------------------------- 1 | # Miscellaneous free energy rules 2 | # ------------------------------- 3 | 4 | # Extrapolation for large loops based on polymer theory 5 | # internal, bulge or hairpin loops > 30: dS(T)=dS(30)+param*ln(n/30) 6 | # --> 7 | 1.079 8 | 9 | # asymmetric internal loops: the ninio equation 10 | # the maximum correction 11 | # --> 12 | 3.0 13 | 14 | # the f(m) array (see Ninio for details) 15 | # --> 16 | .6 .6 .6 .6 17 | 18 | # multibranched loops 19 | # offset, per nuc penalty, helix penalty 20 | # --> 21 | 9.3 -.0 -0.6 22 | 23 | # efn2 multibranched loops 24 | # offset, per nuc penalty, helix penalty 25 | # --> 26 | 9.3 0.0 -0.6 27 | 28 | # multiloop asym 29 | # --> 30 | 0.9 31 | 32 | # multiloop strain 33 | # --> 34 | 3.1 35 | 36 | # terminal AU penalty 37 | # --> 38 | 0.5 39 | 40 | # bonus for GGG hairpin 41 | # --> 42 | -2.2 43 | 44 | # c hairpin slope 45 | # --> 46 | 0.3 47 | 48 | # c hairpin intercept 49 | # --> 50 | 1.6 51 | 52 | # c hairpin of 3 53 | # --> 54 | 1.5 55 | 56 | # Intermolecular initiation free energy 57 | # --> 58 | 4.1 59 | 60 | # Bonus for Single C bulges adjacent to C 61 | # --> 62 | -0.9 63 | -------------------------------------------------------------------------------- /src/data_tables/rna.miscloop.dh: -------------------------------------------------------------------------------- 1 | #The Miscellaneous Enthalpy rules 2 | #------------------------------- 3 | 4 | # Extrapolation for large loops based on polymer theory 5 | # internal, bulge or hairpin loops > 30: dS(T)=dS(30)+param*ln(n/30) 6 | # --> 7 | 0 8 | 9 | # asymmetric internal loops: the ninio equation 10 | # the maximum correction 11 | # --> 12 | 0 13 | 14 | # the f(m) array (see Ninio for details) 15 | # --> 16 | 3.2 3.2 3.2 3.2 17 | 18 | # multibranched loops 19 | # offset, per nuc penalty, helix penalty 20 | # --> 21 | 30.0 0.0 -2.2 22 | 23 | # efn2 multibranched loops 24 | # offset, per nuc penalty, helix penalty 25 | # --> 26 | 30.0 0.0 -2.2 27 | 28 | # multiloop asym 29 | # --> 30 | 12.9 31 | 32 | # multiloop strain 33 | # --> 34 | 27.1 35 | 36 | # terminal AU penalty 37 | # --> 38 | 3.7 39 | 40 | # bonus for GGG hairpin 41 | # --> 42 | -14.8 43 | 44 | # c hairpin slope 45 | # --> 46 | 3.4 47 | 48 | # c hairpin intercept 49 | # --> 50 | 7.6 51 | 52 | # c hairpin of 3 53 | # --> 54 | 18.6 55 | 56 | # Intermolecular initiation enthalpy 57 | # --> 58 | 3.6 59 | 60 | # Bonus for Single C bulges adjacent to C 61 | # --> 62 | 0 63 | -------------------------------------------------------------------------------- /src/data_tables/rna.tloop.dg: -------------------------------------------------------------------------------- 1 | # Seq Energy 2 | # ------------- 3 | CUACGG 2.8 4 | CUCCGG 2.7 5 | CUUCGG 3.7 6 | CUUUGG 3.7 7 | CCAAGG 3.3 8 | CCCAGG 3.4 9 | CCGAGG 3.5 10 | CCUAGG 3.7 11 | CCACGG 3.7 12 | CCGCGG 3.6 13 | CCUCGG 2.5 14 | CUAAGG 3.6 15 | CUCAGG 3.7 16 | CUUAGG 3.5 17 | CUGCGG 2.8 18 | CAACGG 5.5 19 | 20 | -------------------------------------------------------------------------------- /src/data_tables/rna.tloop.dh: -------------------------------------------------------------------------------- 1 | # Seq Enthalpy 2 | # ------------- 3 | CUACGG -10.7 4 | CUCCGG -12.9 5 | CUUCGG -15.3 6 | CUUUGG -6.8 7 | CCAAGG -10.3 8 | CCCAGG -8.9 9 | CCGAGG -6.6 10 | CCUAGG -3.5 11 | CCACGG -3.3 12 | CCGCGG -7.5 13 | CCUCGG -13.9 14 | CUAAGG -7.6 15 | CUCAGG -6.6 16 | CUUAGG -6.2 17 | CUGCGG -10.7 18 | CAACGG 6.9 19 | -------------------------------------------------------------------------------- /src/data_tables/rna.triloop.dg: -------------------------------------------------------------------------------- 1 | # Seq Energy 2 | # ------------- 3 | CAACG 6.8 4 | GUUAC 6.9 -------------------------------------------------------------------------------- /src/data_tables/rna.triloop.dh: -------------------------------------------------------------------------------- 1 | # Seq Enthalpy 2 | # ------------- 3 | CAACG 23.7 4 | GUUAC 10.8 5 | -------------------------------------------------------------------------------- /src/data_tables/tloop.dat: -------------------------------------------------------------------------------- 1 | Seq Energy 2 | ------------- 3 | CUACGG 2.8 4 | CUCCGG 2.7 5 | CUUCGG 3.7 6 | CUUUGG 3.7 7 | CCAAGG 3.3 8 | CCCAGG 3.4 9 | CCGAGG 3.5 10 | CCUAGG 3.7 11 | CCACGG 3.7 12 | CCGCGG 3.6 13 | CCUCGG 2.5 14 | CUAAGG 3.6 15 | CUCAGG 3.7 16 | CUUAGG 3.5 17 | CUGCGG 2.8 18 | CAACGG 5.5 19 | 20 | -------------------------------------------------------------------------------- /src/data_tables/tloop.dh: -------------------------------------------------------------------------------- 1 | Seq Enthalpy 2 | ------------- 3 | CUACGG -10.7 4 | CUCCGG -12.9 5 | CUUCGG -15.3 6 | CUUUGG -6.8 7 | CCAAGG -10.3 8 | CCCAGG -8.9 9 | CCGAGG -6.6 10 | CCUAGG -3.5 11 | CCACGG -3.3 12 | CCGCGG -7.5 13 | CCUCGG -13.9 14 | CUAAGG -7.6 15 | CUCAGG -6.6 16 | CUUAGG -6.2 17 | CUGCGG -10.7 18 | CAACGG 6.9 19 | -------------------------------------------------------------------------------- /src/data_tables/triloop.dat: -------------------------------------------------------------------------------- 1 | Seq Energy 2 | ------------- 3 | CAACG 6.8 4 | GUUAC 6.9 -------------------------------------------------------------------------------- /src/data_tables/triloop.dh: -------------------------------------------------------------------------------- 1 | Seq Enthalpy 2 | ------------- 3 | CAACG 23.7 4 | GUUAC 10.8 5 | -------------------------------------------------------------------------------- /src/utils/GuideTree.h: -------------------------------------------------------------------------------- 1 | #ifndef _GUIDETREE_ 2 | #define _GUIDETREE_ 3 | 4 | #include 5 | #include 6 | #include 7 | #include "SafeVector.h" 8 | #include "MultiSequence.h" 9 | #include "Sequence.h" 10 | 11 | using namespace std; 12 | 13 | //! TreeNode Class 14 | /*! 15 | The TreeNode Class provides unit for representing an alignment tree. 16 | */ 17 | 18 | class TreeNode { 19 | 20 | int sequenceLabel; // sequence label 21 | TreeNode *left, *right, *parent; // pointers to left, right children 22 | 23 | public: 24 | 25 | //! Constructor for a tree node. 26 | //! Note that sequenceLabel = -1 implies that the current node is not a leaf in the tree. 27 | TreeNode(int sequenceLabel); 28 | ~TreeNode(); 29 | 30 | 31 | // Getters 32 | int GetSequenceLabel() const ; 33 | TreeNode *GetLeftChild() const ; 34 | TreeNode *GetRightChild() const ; 35 | TreeNode *GetParent() const ; 36 | 37 | // Setters 38 | void SetSequenceLabel(int sequenceLabel); 39 | void SetLeftChild(TreeNode *left); 40 | void SetRightChild(TreeNode *right); 41 | void SetParent(TreeNode *parent); 42 | 43 | //! Computes a guide tree based on a given distance matrix. 44 | static TreeNode *ComputeTree(const SafeVector > &distMatrix); 45 | }; 46 | 47 | #endif -------------------------------------------------------------------------------- /src/utils/SafeVector.cpp: -------------------------------------------------------------------------------- 1 | #ifndef _SAFEVECTOR_ 2 | #define _SAFEVECTOR_ 3 | 4 | #include 5 | #include 6 | 7 | //! Class derived from the STL std::vector. 8 | template 9 | class SafeVector : public std::vector{ 10 | public: 11 | 12 | // miscellaneous constructors 13 | SafeVector() : std::vector() {} 14 | SafeVector (size_t size) : std::vector(size) {} 15 | SafeVector (size_t size, const TYPE &value) : std::vector(size, value) {} 16 | SafeVector (const SafeVector &source) : std::vector(source) {} 17 | 18 | }; 19 | 20 | #endif 21 | -------------------------------------------------------------------------------- /src/utils/SafeVector.h: -------------------------------------------------------------------------------- 1 | #ifndef _SAFEVECTOR_ 2 | #define _SAFEVECTOR_ 3 | 4 | #include 5 | #include 6 | 7 | //! Class derived from the STL std::vector. 8 | template 9 | class SafeVector : public std::vector{ 10 | public: 11 | 12 | // miscellaneous constructors 13 | SafeVector() : std::vector() {} 14 | SafeVector (size_t size) : std::vector(size) {} 15 | SafeVector (size_t size, const TYPE &value) : std::vector(size, value) {} 16 | SafeVector (const SafeVector &source) : std::vector(source) {} 17 | 18 | }; 19 | 20 | #endif 21 | -------------------------------------------------------------------------------- /src/utils/p_alignment.h: -------------------------------------------------------------------------------- 1 | #ifndef _P_ALIGNMENT_ 2 | #define _P_ALIGNMENT_ 3 | 4 | class t_p_alignment 5 | { 6 | public: 7 | t_p_alignment(char* _seq1_aln_line, char* _seq2_aln_line); 8 | ~t_p_alignment(); 9 | 10 | char* seq1_aln_line; 11 | char* seq2_aln_line; 12 | 13 | double get_aln_similarity(char gap_symbol); 14 | }; 15 | 16 | #endif // _P_ALIGNMENT_ 17 | 18 | -------------------------------------------------------------------------------- /src/utils/phmm_array.h: -------------------------------------------------------------------------------- 1 | #ifndef _PHMM_ARRAY_ 2 | #define _PHMM_ARRAY_ 3 | 4 | /* 5 | t_phmm_array is a 3D array that contains state and index information, for storing 6 | forward/backward/ML array computation results. 7 | */ 8 | 9 | class t_phmm_array 10 | { 11 | public: 12 | t_phmm_array(int _n1, int _n2, int _phmm_band_constraint_size, bool mallocate); 13 | ~t_phmm_array(); 14 | 15 | int n1; 16 | int n2; 17 | 18 | double n_bytes_alloced; 19 | 20 | static int low_phmm_limit(int i, int n1, int n2, int phmm_band_constraint_size); 21 | static int high_phmm_limit(int i, int n1, int n2, int phmm_band_constraint_size); 22 | static bool check_phmm_boundary(int i, int k, int n1, int n2, int phmm_band_constraint_size); 23 | bool check_phmm_boundary(int i, int k); 24 | 25 | void set_hmm_array_banded_limits(); 26 | 27 | int* low_phmm_array_limits; 28 | int* high_phmm_array_limits; 29 | 30 | int phmm_band_constraint_size; 31 | 32 | // Indexed by i1, k, i_state 33 | double*** array; 34 | 35 | double& x(int i, int k, int state); 36 | }; 37 | 38 | #endif // _PHMM_ARRAY_ 39 | 40 | 41 | -------------------------------------------------------------------------------- /src/utils/platform.h: -------------------------------------------------------------------------------- 1 | /* 2 | * Dynalign 3 | * by David Mathews, copyright 2002, 2003,2004,2005 4 | * 5 | * Contributors: Chris Connett and Andrew Yohn, 2006 6 | */ 7 | 8 | #ifndef PLATFORM_H 9 | #define PLATFORM_H 10 | 11 | #define sgifix strcat(line," "); 12 | 13 | inline int min(int i, int j) { 14 | return i < j ? i : j; 15 | } 16 | 17 | inline int max (int i, int j) { 18 | return i < j ? j : i; 19 | } 20 | 21 | inline int pow10(int n) { 22 | int j = 1; 23 | 24 | for (int i = 0; i < n; i++) { 25 | j *= 10; 26 | } 27 | 28 | return j; 29 | } 30 | 31 | 32 | 33 | #endif 34 | -------------------------------------------------------------------------------- /src/utils/utils.h: -------------------------------------------------------------------------------- 1 | #ifndef _UTILS_ 2 | #define _UTILS_ 3 | 4 | #include 5 | #include "defines.h" 6 | 7 | #define __MAX_PATH (10000) 8 | 9 | const char* resolve_data_dir(); 10 | bool check_file(char* fp); 11 | void validate_file(char* fp); 12 | char* x_fgets(char* buff, int size, FILE* file); 13 | FILE* open_f(const char* fp, const char* mode); 14 | 15 | #endif // _UTILS_ 16 | 17 | --------------------------------------------------------------------------------