├── .Rhistory ├── .gitattributes ├── .gitignore ├── .idea ├── .gitignore ├── .name ├── UnitedNet_NatComm.iml ├── inspectionProfiles │ ├── Project_Default.xml │ └── profiles_settings.xml ├── misc.xml ├── modules.xml └── vcs.xml ├── LICENSE ├── README.md ├── data ├── .DS_Store ├── UnitedNet.jpg └── explainablelearning.jpg ├── feature_relevance_figures └── .gitkeep ├── notebooks ├── ATACSeq-Relevance-Analysis.ipynb ├── ATACSeq.ipynb ├── DBiT-seq.ipynb ├── DLPFC.ipynb ├── PatchSeq-Relevance_Analysis.ipynb ├── PatchSeq.ipynb ├── feature_relevance_figures │ └── .gitkeep ├── niche_modality.md ├── saved_results │ └── .gitkeep └── shap_robustness │ ├── atacseq │ └── .gitkeep │ └── patchseq │ └── .gitkeep └── src ├── .DS_Store ├── __init__.py ├── configs ├── __init__.py ├── atacseq.py ├── dbitseq.py ├── default.py ├── dlpfc.py └── patchseq.py ├── constants.py ├── data.py ├── interface.py ├── loss.py ├── modules.py ├── plots.py └── scripts.py /.Rhistory: 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