├── .gitignore ├── README.md ├── docs ├── HLCA_mapping_overview_figure.png └── HLCA_metadata_explanation.csv ├── envs └── scarches_mapping_conda_env.yml ├── notebooks └── LCA_scArches_mapping_new_data_to_hlca.ipynb ├── scripts ├── data_import_and_cleaning.py └── scarches_label_transfer.py └── supporting_files ├── HLCA_celltypes_ordered.csv └── HLCA_scarches_gene_order.csv /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/LungCellAtlas/mapping_data_to_the_HLCA/HEAD/.gitignore -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/LungCellAtlas/mapping_data_to_the_HLCA/HEAD/README.md -------------------------------------------------------------------------------- /docs/HLCA_mapping_overview_figure.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/LungCellAtlas/mapping_data_to_the_HLCA/HEAD/docs/HLCA_mapping_overview_figure.png -------------------------------------------------------------------------------- /docs/HLCA_metadata_explanation.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/LungCellAtlas/mapping_data_to_the_HLCA/HEAD/docs/HLCA_metadata_explanation.csv -------------------------------------------------------------------------------- /envs/scarches_mapping_conda_env.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/LungCellAtlas/mapping_data_to_the_HLCA/HEAD/envs/scarches_mapping_conda_env.yml -------------------------------------------------------------------------------- /notebooks/LCA_scArches_mapping_new_data_to_hlca.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/LungCellAtlas/mapping_data_to_the_HLCA/HEAD/notebooks/LCA_scArches_mapping_new_data_to_hlca.ipynb -------------------------------------------------------------------------------- /scripts/data_import_and_cleaning.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/LungCellAtlas/mapping_data_to_the_HLCA/HEAD/scripts/data_import_and_cleaning.py -------------------------------------------------------------------------------- /scripts/scarches_label_transfer.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/LungCellAtlas/mapping_data_to_the_HLCA/HEAD/scripts/scarches_label_transfer.py -------------------------------------------------------------------------------- /supporting_files/HLCA_celltypes_ordered.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/LungCellAtlas/mapping_data_to_the_HLCA/HEAD/supporting_files/HLCA_celltypes_ordered.csv -------------------------------------------------------------------------------- /supporting_files/HLCA_scarches_gene_order.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/LungCellAtlas/mapping_data_to_the_HLCA/HEAD/supporting_files/HLCA_scarches_gene_order.csv --------------------------------------------------------------------------------