├── .gitignore ├── LICENSE ├── README.md ├── requirements.txt ├── runPdoc_documentation.py ├── src ├── __init__.py ├── agents │ ├── Agent.py │ ├── Agent_Med_NCA.py │ ├── Agent_Multi_NCA.py │ ├── Agent_NCA.py │ ├── Agent_UNet.py │ └── __init__.py ├── datasets │ ├── Data_Instance.py │ ├── Dataset_3D.py │ ├── Dataset_Base.py │ ├── Nii_Gz_Dataset.py │ ├── Nii_Gz_Dataset_3D.py │ └── __init__.py ├── examples │ ├── __init__.py │ ├── train_Backbone2D_NCA.py │ ├── train_Med_NCA.py │ └── train_Unet2D.py ├── images │ ├── backbone_model_MedNCA.png │ └── model_MedNCA.png ├── losses │ ├── LossFunctions.py │ └── __init__.py ├── models │ ├── Model_BackboneNCA.py │ ├── Model_BasicNCA.py │ └── __init__.py └── utils │ ├── Experiment.py │ ├── __init__.py │ └── helper.py ├── train_Backbone2D_NCA.ipynb ├── train_Med_NCA.ipynb └── train_UNet2D.ipynb /.gitignore: -------------------------------------------------------------------------------- 1 | *.pyc 2 | *.gif 3 | runs/ 4 | html/ 5 | M:/Models/* 6 | Study/* 7 | -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MECLabTUDA/Med-NCA/HEAD/LICENSE -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MECLabTUDA/Med-NCA/HEAD/README.md -------------------------------------------------------------------------------- /requirements.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MECLabTUDA/Med-NCA/HEAD/requirements.txt -------------------------------------------------------------------------------- /runPdoc_documentation.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MECLabTUDA/Med-NCA/HEAD/runPdoc_documentation.py -------------------------------------------------------------------------------- /src/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MECLabTUDA/Med-NCA/HEAD/src/__init__.py -------------------------------------------------------------------------------- /src/agents/Agent.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MECLabTUDA/Med-NCA/HEAD/src/agents/Agent.py -------------------------------------------------------------------------------- /src/agents/Agent_Med_NCA.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MECLabTUDA/Med-NCA/HEAD/src/agents/Agent_Med_NCA.py -------------------------------------------------------------------------------- /src/agents/Agent_Multi_NCA.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MECLabTUDA/Med-NCA/HEAD/src/agents/Agent_Multi_NCA.py -------------------------------------------------------------------------------- /src/agents/Agent_NCA.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MECLabTUDA/Med-NCA/HEAD/src/agents/Agent_NCA.py -------------------------------------------------------------------------------- /src/agents/Agent_UNet.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MECLabTUDA/Med-NCA/HEAD/src/agents/Agent_UNet.py -------------------------------------------------------------------------------- /src/agents/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MECLabTUDA/Med-NCA/HEAD/src/agents/__init__.py -------------------------------------------------------------------------------- /src/datasets/Data_Instance.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MECLabTUDA/Med-NCA/HEAD/src/datasets/Data_Instance.py -------------------------------------------------------------------------------- /src/datasets/Dataset_3D.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MECLabTUDA/Med-NCA/HEAD/src/datasets/Dataset_3D.py -------------------------------------------------------------------------------- /src/datasets/Dataset_Base.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MECLabTUDA/Med-NCA/HEAD/src/datasets/Dataset_Base.py -------------------------------------------------------------------------------- /src/datasets/Nii_Gz_Dataset.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MECLabTUDA/Med-NCA/HEAD/src/datasets/Nii_Gz_Dataset.py -------------------------------------------------------------------------------- /src/datasets/Nii_Gz_Dataset_3D.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MECLabTUDA/Med-NCA/HEAD/src/datasets/Nii_Gz_Dataset_3D.py -------------------------------------------------------------------------------- /src/datasets/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MECLabTUDA/Med-NCA/HEAD/src/datasets/__init__.py -------------------------------------------------------------------------------- /src/examples/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MECLabTUDA/Med-NCA/HEAD/src/examples/__init__.py -------------------------------------------------------------------------------- /src/examples/train_Backbone2D_NCA.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MECLabTUDA/Med-NCA/HEAD/src/examples/train_Backbone2D_NCA.py -------------------------------------------------------------------------------- /src/examples/train_Med_NCA.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MECLabTUDA/Med-NCA/HEAD/src/examples/train_Med_NCA.py -------------------------------------------------------------------------------- /src/examples/train_Unet2D.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MECLabTUDA/Med-NCA/HEAD/src/examples/train_Unet2D.py -------------------------------------------------------------------------------- /src/images/backbone_model_MedNCA.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MECLabTUDA/Med-NCA/HEAD/src/images/backbone_model_MedNCA.png -------------------------------------------------------------------------------- /src/images/model_MedNCA.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MECLabTUDA/Med-NCA/HEAD/src/images/model_MedNCA.png -------------------------------------------------------------------------------- /src/losses/LossFunctions.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MECLabTUDA/Med-NCA/HEAD/src/losses/LossFunctions.py -------------------------------------------------------------------------------- /src/losses/__init__.py: -------------------------------------------------------------------------------- 1 | """ 2 | Loss functions go here. 3 | 4 | """ -------------------------------------------------------------------------------- /src/models/Model_BackboneNCA.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MECLabTUDA/Med-NCA/HEAD/src/models/Model_BackboneNCA.py -------------------------------------------------------------------------------- /src/models/Model_BasicNCA.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MECLabTUDA/Med-NCA/HEAD/src/models/Model_BasicNCA.py -------------------------------------------------------------------------------- /src/models/__init__.py: -------------------------------------------------------------------------------- 1 | """ 2 | Models go here. 3 | 4 | """ -------------------------------------------------------------------------------- /src/utils/Experiment.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MECLabTUDA/Med-NCA/HEAD/src/utils/Experiment.py -------------------------------------------------------------------------------- /src/utils/__init__.py: -------------------------------------------------------------------------------- 1 | """ 2 | Utility functions are stored here. 3 | 4 | """ -------------------------------------------------------------------------------- /src/utils/helper.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MECLabTUDA/Med-NCA/HEAD/src/utils/helper.py -------------------------------------------------------------------------------- /train_Backbone2D_NCA.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MECLabTUDA/Med-NCA/HEAD/train_Backbone2D_NCA.ipynb -------------------------------------------------------------------------------- /train_Med_NCA.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MECLabTUDA/Med-NCA/HEAD/train_Med_NCA.ipynb -------------------------------------------------------------------------------- /train_UNet2D.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MECLabTUDA/Med-NCA/HEAD/train_UNet2D.ipynb --------------------------------------------------------------------------------