├── CAT_pack ├── CAT_pack ├── about.py ├── add_names.py ├── bins.py ├── check.py ├── contigs.py ├── download.py ├── prepare.py ├── reads.py ├── shared.py ├── summarise.py └── tax.py ├── CHANGELOG.md ├── LICENSE.md ├── README.md └── tests └── data ├── PATRIC.weighted_mean_genome_size.txt ├── contigs └── small_contigs.fa └── prepare ├── lineages.txt ├── names.dmp ├── nodes.dmp ├── prot2acc.txt └── small.fa.gz /CAT_pack/CAT_pack: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MGXlab/CAT_pack/HEAD/CAT_pack/CAT_pack -------------------------------------------------------------------------------- /CAT_pack/about.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MGXlab/CAT_pack/HEAD/CAT_pack/about.py -------------------------------------------------------------------------------- /CAT_pack/add_names.py: 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