├── .gitignore ├── LICENSE ├── README.md ├── assets ├── .directory ├── annotations.png ├── baseline_figure.png ├── hist_example.png ├── prediction_pipeline.png ├── regrcnn.png ├── retu_figure.png ├── teaser.png ├── toy_readme.png ├── train_gen.png ├── wcs_hists.png ├── wcs_readme.png ├── wcs_sketch.png └── wcs_text.png ├── custom_extensions ├── nms │ ├── nms.py │ ├── setup.py │ └── src │ │ ├── cuda_helpers.h │ │ ├── nms.cu │ │ └── nms_interface.cpp └── roi_align │ ├── 2D │ ├── setup.py │ └── src │ │ ├── RoIAlign_cuda.cu │ │ ├── RoIAlign_interface.cpp │ │ └── cuda_helpers.h │ ├── 3D │ ├── setup.py │ └── src │ │ ├── RoIAlign_cuda_3d.cu │ │ ├── RoIAlign_interface_3d.cpp │ │ └── cuda_helpers.h │ └── roi_align.py ├── data_manager.py ├── datasets ├── lidc │ ├── LIDC_XML_Documentation_1_Jan_2009.doc │ ├── analyze_dataset.py │ ├── configs.py │ ├── data_loader.py │ └── preprocessing.py ├── toy │ ├── configs.py │ ├── data_loader.py │ └── generate_toys.py └── toy_mdt │ ├── configs.py │ ├── data_loader.py │ └── generate_toys.py ├── default_configs.py ├── evaluator.py ├── exec.py ├── inference_analysis.py ├── models ├── backbone.py ├── detection_fpn.py ├── detection_unet.py ├── mrcnn.py └── retina_net.py ├── plotting.py ├── predictor.py ├── requirements.txt ├── setup.py ├── shell_scripts ├── cluster_runner_meddec.sh ├── job_starter.sh └── update_scripts_on_cluster.sh ├── unittests.py └── utils ├── dataloader_utils.py ├── exp_utils.py └── model_utils.py /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MIC-DKFZ/RegRCNN/HEAD/.gitignore -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MIC-DKFZ/RegRCNN/HEAD/LICENSE -------------------------------------------------------------------------------- /README.md: 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