./manage.py runserver
28 | ./manage.py migrate
29 | ./manage.py makemigrations
30 | Query class and prevent the conversion of snake_case class names to CamelCase:
35 | schema = graphene.Schema(query=Query, auto_camelcase=False)waveform-django/export/urls.py.
37 |
--------------------------------------------------------------------------------
/waveform-django/cron.py:
--------------------------------------------------------------------------------
1 | from datetime import datetime
2 | import os
3 |
4 | import pandas as pd
5 | import pytz
6 |
7 | from waveforms.models import Annotation
8 | from website.settings import base
9 |
10 |
11 | def update_annotations():
12 | """
13 | Automatically download the annotations to a CSV file as a cron job.
14 |
15 | Parameters
16 | ----------
17 | N/A
18 |
19 | Returns
20 | -------
21 | N/A
22 |
23 | """
24 | # Update the annotation CSV file each night at midnight.
25 | all_anns = Annotation.objects.all()
26 | csv_df = pd.DataFrame.from_dict({
27 | 'username': [a.user.username for a in all_anns],
28 | 'project' : [a.project for a in all_anns],
29 | 'record': [a.record for a in all_anns],
30 | 'event': [a.event for a in all_anns],
31 | 'decision': [a.decision for a in all_anns],
32 | 'comments': [a.comments for a in all_anns],
33 | 'decision_date': [str(a.decision_date) for a in all_anns],
34 | 'is_adjudication': [a.is_adjudication for a in all_anns],
35 | })
36 | file_name = datetime.now(pytz.timezone(base.TIME_ZONE)).strftime('all-anns_%H_%M_%d_%m_%Y.csv')
37 | out_file = os.path.join(base.HEAD_DIR, 'backups', file_name)
38 | csv_df.to_csv(out_file, sep=',', index=False)
39 |
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/waveform-django/export/__init__.py:
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https://raw.githubusercontent.com/MIT-LCP/waveform-annotation/85f199f421ea0475eddc73bdd46fabeb494afd50/waveform-django/export/__init__.py
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/waveform-django/export/apps.py:
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1 | from django.apps import AppConfig
2 |
3 |
4 | class ExportConfig(AppConfig):
5 | name = 'export'
6 |
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/waveform-django/export/schema.py:
--------------------------------------------------------------------------------
1 | import graphene
2 | from graphene_django.types import DjangoObjectType
3 | from graphene_django.filter import DjangoFilterConnectionField
4 |
5 | from waveforms.models import User, Annotation, UserSettings
6 |
7 |
8 | # View results at:
9 | # http://localhost:8000/waveform-annotation/graphql?query={all_users{edges{node{username,join_date}}}}
10 | class UserType(DjangoObjectType):
11 | class Meta:
12 | model = User
13 | filter_fields = ['username', 'join_date']
14 | interfaces = (graphene.relay.Node, )
15 |
16 |
17 | # View results at:
18 | # http://localhost:8000/waveform-annotation/graphql?query={all_annotations{edges{node{user{username},project,record,event,decision,comments,decision_date}}}}
19 | class AnnotationType(DjangoObjectType):
20 | class Meta:
21 | model = Annotation
22 | user = graphene.Field(UserType)
23 | filter_fields = ['user', 'project', 'record', 'event', 'decision',
24 | 'comments', 'decision_date']
25 | interfaces = (graphene.relay.Node, )
26 |
27 |
28 | # View results at:
29 | # http://localhost:8000/waveform-annotation/graphql?query={all_user_settings{edges{node{user{username},fig_height,fig_width,margin_left,margin_top,margin_right,margin_bottom,grid_color,sig_color,sig_thickness,ann_color,grid_delta_major,max_y_labels,n_ekg_sigs,down_sample_ekg,down_sample,time_range_min,time_range_max,window_size_min,window_size_max}}}}
30 | class UserSettingsType(DjangoObjectType):
31 | class Meta:
32 | model = UserSettings
33 | user = graphene.Field(UserType)
34 | filter_fields = ['user', 'fig_height', 'fig_width', 'margin_left',
35 | 'margin_top', 'margin_right', 'margin_bottom',
36 | 'grid_color', 'sig_color', 'sig_thickness',
37 | 'ann_color', 'grid_delta_major', 'max_y_labels',
38 | 'n_ekg_sigs', 'down_sample_ekg', 'down_sample',
39 | 'time_range_min', 'time_range_max',
40 | 'window_size_min', 'window_size_max']
41 | interfaces = (graphene.relay.Node, )
42 |
43 |
44 | class Query(graphene.ObjectType):
45 | all_users = DjangoFilterConnectionField(UserType)
46 | all_annotations = DjangoFilterConnectionField(AnnotationType)
47 | all_user_settings = DjangoFilterConnectionField(UserSettingsType)
48 |
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/waveform-django/export/tests.py:
--------------------------------------------------------------------------------
1 | from django.test.testcases import TestCase
2 | import graphene
3 | import json
4 | from schema import Query
5 |
6 | from waveforms.models import Annotation
7 |
8 |
9 | class TestGraphQL(TestCase):
10 | """
11 | Test the GraphQL API queries.
12 | """
13 | def test_all_annotations(self):
14 | """
15 | Test querying for annotations and their attributes.
16 |
17 | Parameters
18 | ----------
19 | N/A
20 |
21 | Returns
22 | -------
23 | N/A
24 |
25 | """
26 | schema = graphene.Schema(query=Query, auto_camelcase=False)
27 | query_correct = """
28 | query {
29 | all_annotations {
30 | user
31 | project
32 | record
33 | event
34 | decision
35 | comments
36 | decision_date
37 | }
38 | }
39 | """
40 | query_incorrect = """
41 | query {
42 | all_annotations {
43 | user
44 | project
45 | record
46 | event
47 | decision
48 | comments
49 | }
50 | }
51 | """
52 | correct_output = []
53 | for p in Annotation.objects.all():
54 | correct_output.append({
55 | 'user': p.user,
56 | 'project': p.project,
57 | 'record': p.record,
58 | 'event': p.event,
59 | 'slug': p.slug,
60 | 'decision': p.decision,
61 | 'comments': p.comments,
62 | 'decision_date': p.decision_date,
63 | })
64 | result_correct = schema.execute(query_correct)
65 | self.assertIsNone(result_correct.errors)
66 | result_incorrect = schema.execute(query_incorrect)
67 | self.assertIsNotNone(result_incorrect.errors)
68 | result_correct = json.loads(json.dumps(result_correct.to_dict()))['data']['all_annotations']
69 | matches = [i for i in result_correct if i not in correct_output]
70 | self.assertEqual(matches, [])
71 |
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/waveform-django/export/urls.py:
--------------------------------------------------------------------------------
1 | from django.urls import path
2 | from graphene_django.views import GraphQLView
3 | from schema import schema
4 |
5 |
6 | urlpatterns = [
7 | path('graphql', GraphQLView.as_view(graphiql=False, schema=schema),
8 | name='graphql'),
9 | ]
10 |
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/waveform-django/manage.py:
--------------------------------------------------------------------------------
1 | #!/usr/bin/env python3
2 | import os
3 | import sys
4 |
5 | if __name__ == "__main__":
6 | os.environ.setdefault("DJANGO_SETTINGS_MODULE", "website.settings.base")#sqlite")
7 | try:
8 | from django.core.management import execute_from_command_line
9 | except ImportError:
10 | # The above import may fail for some other reason. Ensure that the
11 | # issue is really that Django is missing to avoid masking other
12 | # exceptions on Python 2.
13 | try:
14 | import django
15 | except ImportError:
16 | raise ImportError(
17 | "Couldn't import Django. Are you sure it's installed and "
18 | "available on your PYTHONPATH environment variable? Did you "
19 | "forget to activate a virtual environment?"
20 | )
21 | raise
22 | execute_from_command_line(sys.argv)
23 |
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/waveform-django/schema.py:
--------------------------------------------------------------------------------
1 | import export.schema
2 | import graphene
3 |
4 |
5 | class Query(export.schema.Query, graphene.ObjectType):
6 | # This class will inherit from multiple Queries
7 | # as we begin to add more apps to our project
8 | pass
9 |
10 | schema = graphene.Schema(query=Query, auto_camelcase=False)
11 |
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/waveform-django/static/bootstrap/css/dashboard.css:
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1 | /*
2 | * Base structure
3 | */
4 |
5 | /* Move down content because we have a fixed navbar that is 3.5rem tall */
6 | body {
7 | padding-top: 3.5rem;
8 | }
9 |
10 | /*
11 | * Typography
12 | */
13 |
14 | h1 {
15 | margin-bottom: 20px;
16 | padding-bottom: 9px;
17 | border-bottom: 1px solid #eee;
18 | }
19 |
20 | /*
21 | * Sidebar
22 | */
23 |
24 | .sidebar {
25 | position: fixed;
26 | top: 51px;
27 | bottom: 0;
28 | left: 0;
29 | z-index: 1000;
30 | padding: 20px;
31 | overflow-x: hidden;
32 | overflow-y: auto; /* Scrollable contents if viewport is shorter than content. */
33 | border-right: 1px solid #eee;
34 | }
35 |
36 | /* Sidebar navigation */
37 | .sidebar {
38 | padding-left: 0;
39 | padding-right: 0;
40 | }
41 |
42 | .sidebar .nav {
43 | margin-bottom: 20px;
44 | }
45 |
46 | .sidebar .nav-item {
47 | width: 100%;
48 | }
49 |
50 | .sidebar .nav-item + .nav-item {
51 | margin-left: 0;
52 | }
53 |
54 | .sidebar .nav-link {
55 | border-radius: 0;
56 | }
57 |
58 | /*
59 | * Dashboard
60 | */
61 |
62 | /* Placeholders */
63 | .placeholders {
64 | padding-bottom: 3rem;
65 | }
66 |
67 | .placeholder img {
68 | padding-top: 1.5rem;
69 | padding-bottom: 1.5rem;
70 | }
71 |
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/waveform-django/static/bootstrap/js/ie10-viewport-bug-workaround.js:
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1 | /*!
2 | * IE10 viewport hack for Surface/desktop Windows 8 bug
3 | * Copyright 2014-2017 The Bootstrap Authors
4 | * Copyright 2014-2017 Twitter, Inc.
5 | * Licensed under MIT (https://github.com/twbs/bootstrap/blob/master/LICENSE)
6 | */
7 |
8 | // See the Getting Started docs for more information:
9 | // https://getbootstrap.com/getting-started/#support-ie10-width
10 |
11 | (function () {
12 | 'use strict'
13 |
14 | if (navigator.userAgent.match(/IEMobile\/10\.0/)) {
15 | var msViewportStyle = document.createElement('style')
16 | msViewportStyle.appendChild(
17 | document.createTextNode(
18 | '@-ms-viewport{width:auto!important}'
19 | )
20 | )
21 | document.head.appendChild(msViewportStyle)
22 | }
23 |
24 | }())
25 |
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/waveform-django/static/bootstrap/js/offcanvas.js:
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1 | $(document).ready(function () {
2 | $('[data-toggle="offcanvas"]').click(function () {
3 | $('.row-offcanvas').toggleClass('active')
4 | });
5 | });
6 |
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/waveform-django/static/caliper.mp4:
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https://raw.githubusercontent.com/MIT-LCP/waveform-annotation/85f199f421ea0475eddc73bdd46fabeb494afd50/waveform-django/static/caliper.mp4
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/waveform-django/static/caliper.png:
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https://raw.githubusercontent.com/MIT-LCP/waveform-annotation/85f199f421ea0475eddc73bdd46fabeb494afd50/waveform-django/static/caliper.png
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/waveform-django/static/favicon.ico:
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https://raw.githubusercontent.com/MIT-LCP/waveform-annotation/85f199f421ea0475eddc73bdd46fabeb494afd50/waveform-django/static/favicon.ico
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/waveform-django/static/font-awesome/HELP-US-OUT.txt:
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1 | I hope you love Font Awesome. If you've found it useful, please do me a favor and check out my latest project,
2 | Fort Awesome (https://fortawesome.com). It makes it easy to put the perfect icons on your website. Choose from our awesome,
3 | comprehensive icon sets or copy and paste your own.
4 |
5 | Please. Check it out.
6 |
7 | -Dave Gandy
8 |
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/waveform-django/static/font-awesome/fonts/FontAwesome.otf:
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https://raw.githubusercontent.com/MIT-LCP/waveform-annotation/85f199f421ea0475eddc73bdd46fabeb494afd50/waveform-django/static/font-awesome/fonts/FontAwesome.otf
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/waveform-django/static/font-awesome/fonts/fontawesome-webfont.eot:
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https://raw.githubusercontent.com/MIT-LCP/waveform-annotation/85f199f421ea0475eddc73bdd46fabeb494afd50/waveform-django/static/font-awesome/fonts/fontawesome-webfont.eot
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/waveform-django/static/font-awesome/fonts/fontawesome-webfont.ttf:
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https://raw.githubusercontent.com/MIT-LCP/waveform-annotation/85f199f421ea0475eddc73bdd46fabeb494afd50/waveform-django/static/font-awesome/fonts/fontawesome-webfont.ttf
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/waveform-django/static/font-awesome/fonts/fontawesome-webfont.woff:
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https://raw.githubusercontent.com/MIT-LCP/waveform-annotation/85f199f421ea0475eddc73bdd46fabeb494afd50/waveform-django/static/font-awesome/fonts/fontawesome-webfont.woff
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/waveform-django/static/font-awesome/fonts/fontawesome-webfont.woff2:
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https://raw.githubusercontent.com/MIT-LCP/waveform-annotation/85f199f421ea0475eddc73bdd46fabeb494afd50/waveform-django/static/font-awesome/fonts/fontawesome-webfont.woff2
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/waveform-django/static/font-awesome/less/animated.less:
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1 | // Animated Icons
2 | // --------------------------
3 |
4 | .@{fa-css-prefix}-spin {
5 | -webkit-animation: fa-spin 2s infinite linear;
6 | animation: fa-spin 2s infinite linear;
7 | }
8 |
9 | .@{fa-css-prefix}-pulse {
10 | -webkit-animation: fa-spin 1s infinite steps(8);
11 | animation: fa-spin 1s infinite steps(8);
12 | }
13 |
14 | @-webkit-keyframes fa-spin {
15 | 0% {
16 | -webkit-transform: rotate(0deg);
17 | transform: rotate(0deg);
18 | }
19 | 100% {
20 | -webkit-transform: rotate(359deg);
21 | transform: rotate(359deg);
22 | }
23 | }
24 |
25 | @keyframes fa-spin {
26 | 0% {
27 | -webkit-transform: rotate(0deg);
28 | transform: rotate(0deg);
29 | }
30 | 100% {
31 | -webkit-transform: rotate(359deg);
32 | transform: rotate(359deg);
33 | }
34 | }
35 |
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/waveform-django/static/font-awesome/less/bordered-pulled.less:
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1 | // Bordered & Pulled
2 | // -------------------------
3 |
4 | .@{fa-css-prefix}-border {
5 | padding: .2em .25em .15em;
6 | border: solid .08em @fa-border-color;
7 | border-radius: .1em;
8 | }
9 |
10 | .@{fa-css-prefix}-pull-left { float: left; }
11 | .@{fa-css-prefix}-pull-right { float: right; }
12 |
13 | .@{fa-css-prefix} {
14 | &.@{fa-css-prefix}-pull-left { margin-right: .3em; }
15 | &.@{fa-css-prefix}-pull-right { margin-left: .3em; }
16 | }
17 |
18 | /* Deprecated as of 4.4.0 */
19 | .pull-right { float: right; }
20 | .pull-left { float: left; }
21 |
22 | .@{fa-css-prefix} {
23 | &.pull-left { margin-right: .3em; }
24 | &.pull-right { margin-left: .3em; }
25 | }
26 |
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/waveform-django/static/font-awesome/less/core.less:
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1 | // Base Class Definition
2 | // -------------------------
3 |
4 | .@{fa-css-prefix} {
5 | display: inline-block;
6 | font: normal normal normal @fa-font-size-base/@fa-line-height-base FontAwesome; // shortening font declaration
7 | font-size: inherit; // can't have font-size inherit on line above, so need to override
8 | text-rendering: auto; // optimizelegibility throws things off #1094
9 | -webkit-font-smoothing: antialiased;
10 | -moz-osx-font-smoothing: grayscale;
11 |
12 | }
13 |
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/waveform-django/static/font-awesome/less/fixed-width.less:
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1 | // Fixed Width Icons
2 | // -------------------------
3 | .@{fa-css-prefix}-fw {
4 | width: (18em / 14);
5 | text-align: center;
6 | }
7 |
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/waveform-django/static/font-awesome/less/font-awesome.less:
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1 | /*!
2 | * Font Awesome 4.7.0 by @davegandy - http://fontawesome.io - @fontawesome
3 | * License - http://fontawesome.io/license (Font: SIL OFL 1.1, CSS: MIT License)
4 | */
5 |
6 | @import "variables.less";
7 | @import "mixins.less";
8 | @import "path.less";
9 | @import "core.less";
10 | @import "larger.less";
11 | @import "fixed-width.less";
12 | @import "list.less";
13 | @import "bordered-pulled.less";
14 | @import "animated.less";
15 | @import "rotated-flipped.less";
16 | @import "stacked.less";
17 | @import "icons.less";
18 | @import "screen-reader.less";
19 |
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/waveform-django/static/font-awesome/less/larger.less:
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1 | // Icon Sizes
2 | // -------------------------
3 |
4 | /* makes the font 33% larger relative to the icon container */
5 | .@{fa-css-prefix}-lg {
6 | font-size: (4em / 3);
7 | line-height: (3em / 4);
8 | vertical-align: -15%;
9 | }
10 | .@{fa-css-prefix}-2x { font-size: 2em; }
11 | .@{fa-css-prefix}-3x { font-size: 3em; }
12 | .@{fa-css-prefix}-4x { font-size: 4em; }
13 | .@{fa-css-prefix}-5x { font-size: 5em; }
14 |
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/waveform-django/static/font-awesome/less/list.less:
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1 | // List Icons
2 | // -------------------------
3 |
4 | .@{fa-css-prefix}-ul {
5 | padding-left: 0;
6 | margin-left: @fa-li-width;
7 | list-style-type: none;
8 | > li { position: relative; }
9 | }
10 | .@{fa-css-prefix}-li {
11 | position: absolute;
12 | left: -@fa-li-width;
13 | width: @fa-li-width;
14 | top: (2em / 14);
15 | text-align: center;
16 | &.@{fa-css-prefix}-lg {
17 | left: (-@fa-li-width + (4em / 14));
18 | }
19 | }
20 |
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/waveform-django/static/font-awesome/less/mixins.less:
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1 | // Mixins
2 | // --------------------------
3 |
4 | .fa-icon() {
5 | display: inline-block;
6 | font: normal normal normal @fa-font-size-base/@fa-line-height-base FontAwesome; // shortening font declaration
7 | font-size: inherit; // can't have font-size inherit on line above, so need to override
8 | text-rendering: auto; // optimizelegibility throws things off #1094
9 | -webkit-font-smoothing: antialiased;
10 | -moz-osx-font-smoothing: grayscale;
11 |
12 | }
13 |
14 | .fa-icon-rotate(@degrees, @rotation) {
15 | -ms-filter: "progid:DXImageTransform.Microsoft.BasicImage(rotation=@{rotation})";
16 | -webkit-transform: rotate(@degrees);
17 | -ms-transform: rotate(@degrees);
18 | transform: rotate(@degrees);
19 | }
20 |
21 | .fa-icon-flip(@horiz, @vert, @rotation) {
22 | -ms-filter: "progid:DXImageTransform.Microsoft.BasicImage(rotation=@{rotation}, mirror=1)";
23 | -webkit-transform: scale(@horiz, @vert);
24 | -ms-transform: scale(@horiz, @vert);
25 | transform: scale(@horiz, @vert);
26 | }
27 |
28 |
29 | // Only display content to screen readers. A la Bootstrap 4.
30 | //
31 | // See: http://a11yproject.com/posts/how-to-hide-content/
32 |
33 | .sr-only() {
34 | position: absolute;
35 | width: 1px;
36 | height: 1px;
37 | padding: 0;
38 | margin: -1px;
39 | overflow: hidden;
40 | clip: rect(0,0,0,0);
41 | border: 0;
42 | }
43 |
44 | // Use in conjunction with .sr-only to only display content when it's focused.
45 | //
46 | // Useful for "Skip to main content" links; see http://www.w3.org/TR/2013/NOTE-WCAG20-TECHS-20130905/G1
47 | //
48 | // Credit: HTML5 Boilerplate
49 |
50 | .sr-only-focusable() {
51 | &:active,
52 | &:focus {
53 | position: static;
54 | width: auto;
55 | height: auto;
56 | margin: 0;
57 | overflow: visible;
58 | clip: auto;
59 | }
60 | }
61 |
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/waveform-django/static/font-awesome/less/path.less:
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1 | /* FONT PATH
2 | * -------------------------- */
3 |
4 | @font-face {
5 | font-family: 'FontAwesome';
6 | src: url('@{fa-font-path}/fontawesome-webfont.eot?v=@{fa-version}');
7 | src: url('@{fa-font-path}/fontawesome-webfont.eot?#iefix&v=@{fa-version}') format('embedded-opentype'),
8 | url('@{fa-font-path}/fontawesome-webfont.woff2?v=@{fa-version}') format('woff2'),
9 | url('@{fa-font-path}/fontawesome-webfont.woff?v=@{fa-version}') format('woff'),
10 | url('@{fa-font-path}/fontawesome-webfont.ttf?v=@{fa-version}') format('truetype'),
11 | url('@{fa-font-path}/fontawesome-webfont.svg?v=@{fa-version}#fontawesomeregular') format('svg');
12 | // src: url('@{fa-font-path}/FontAwesome.otf') format('opentype'); // used when developing fonts
13 | font-weight: normal;
14 | font-style: normal;
15 | }
16 |
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/waveform-django/static/font-awesome/less/rotated-flipped.less:
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1 | // Rotated & Flipped Icons
2 | // -------------------------
3 |
4 | .@{fa-css-prefix}-rotate-90 { .fa-icon-rotate(90deg, 1); }
5 | .@{fa-css-prefix}-rotate-180 { .fa-icon-rotate(180deg, 2); }
6 | .@{fa-css-prefix}-rotate-270 { .fa-icon-rotate(270deg, 3); }
7 |
8 | .@{fa-css-prefix}-flip-horizontal { .fa-icon-flip(-1, 1, 0); }
9 | .@{fa-css-prefix}-flip-vertical { .fa-icon-flip(1, -1, 2); }
10 |
11 | // Hook for IE8-9
12 | // -------------------------
13 |
14 | :root .@{fa-css-prefix}-rotate-90,
15 | :root .@{fa-css-prefix}-rotate-180,
16 | :root .@{fa-css-prefix}-rotate-270,
17 | :root .@{fa-css-prefix}-flip-horizontal,
18 | :root .@{fa-css-prefix}-flip-vertical {
19 | filter: none;
20 | }
21 |
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/waveform-django/static/font-awesome/less/screen-reader.less:
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1 | // Screen Readers
2 | // -------------------------
3 |
4 | .sr-only { .sr-only(); }
5 | .sr-only-focusable { .sr-only-focusable(); }
6 |
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/waveform-django/static/font-awesome/less/stacked.less:
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1 | // Stacked Icons
2 | // -------------------------
3 |
4 | .@{fa-css-prefix}-stack {
5 | position: relative;
6 | display: inline-block;
7 | width: 2em;
8 | height: 2em;
9 | line-height: 2em;
10 | vertical-align: middle;
11 | }
12 | .@{fa-css-prefix}-stack-1x, .@{fa-css-prefix}-stack-2x {
13 | position: absolute;
14 | left: 0;
15 | width: 100%;
16 | text-align: center;
17 | }
18 | .@{fa-css-prefix}-stack-1x { line-height: inherit; }
19 | .@{fa-css-prefix}-stack-2x { font-size: 2em; }
20 | .@{fa-css-prefix}-inverse { color: @fa-inverse; }
21 |
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/waveform-django/static/font-awesome/scss/_animated.scss:
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1 | // Spinning Icons
2 | // --------------------------
3 |
4 | .#{$fa-css-prefix}-spin {
5 | -webkit-animation: fa-spin 2s infinite linear;
6 | animation: fa-spin 2s infinite linear;
7 | }
8 |
9 | .#{$fa-css-prefix}-pulse {
10 | -webkit-animation: fa-spin 1s infinite steps(8);
11 | animation: fa-spin 1s infinite steps(8);
12 | }
13 |
14 | @-webkit-keyframes fa-spin {
15 | 0% {
16 | -webkit-transform: rotate(0deg);
17 | transform: rotate(0deg);
18 | }
19 | 100% {
20 | -webkit-transform: rotate(359deg);
21 | transform: rotate(359deg);
22 | }
23 | }
24 |
25 | @keyframes fa-spin {
26 | 0% {
27 | -webkit-transform: rotate(0deg);
28 | transform: rotate(0deg);
29 | }
30 | 100% {
31 | -webkit-transform: rotate(359deg);
32 | transform: rotate(359deg);
33 | }
34 | }
35 |
--------------------------------------------------------------------------------
/waveform-django/static/font-awesome/scss/_bordered-pulled.scss:
--------------------------------------------------------------------------------
1 | // Bordered & Pulled
2 | // -------------------------
3 |
4 | .#{$fa-css-prefix}-border {
5 | padding: .2em .25em .15em;
6 | border: solid .08em $fa-border-color;
7 | border-radius: .1em;
8 | }
9 |
10 | .#{$fa-css-prefix}-pull-left { float: left; }
11 | .#{$fa-css-prefix}-pull-right { float: right; }
12 |
13 | .#{$fa-css-prefix} {
14 | &.#{$fa-css-prefix}-pull-left { margin-right: .3em; }
15 | &.#{$fa-css-prefix}-pull-right { margin-left: .3em; }
16 | }
17 |
18 | /* Deprecated as of 4.4.0 */
19 | .pull-right { float: right; }
20 | .pull-left { float: left; }
21 |
22 | .#{$fa-css-prefix} {
23 | &.pull-left { margin-right: .3em; }
24 | &.pull-right { margin-left: .3em; }
25 | }
26 |
--------------------------------------------------------------------------------
/waveform-django/static/font-awesome/scss/_core.scss:
--------------------------------------------------------------------------------
1 | // Base Class Definition
2 | // -------------------------
3 |
4 | .#{$fa-css-prefix} {
5 | display: inline-block;
6 | font: normal normal normal #{$fa-font-size-base}/#{$fa-line-height-base} FontAwesome; // shortening font declaration
7 | font-size: inherit; // can't have font-size inherit on line above, so need to override
8 | text-rendering: auto; // optimizelegibility throws things off #1094
9 | -webkit-font-smoothing: antialiased;
10 | -moz-osx-font-smoothing: grayscale;
11 |
12 | }
13 |
--------------------------------------------------------------------------------
/waveform-django/static/font-awesome/scss/_fixed-width.scss:
--------------------------------------------------------------------------------
1 | // Fixed Width Icons
2 | // -------------------------
3 | .#{$fa-css-prefix}-fw {
4 | width: (18em / 14);
5 | text-align: center;
6 | }
7 |
--------------------------------------------------------------------------------
/waveform-django/static/font-awesome/scss/_larger.scss:
--------------------------------------------------------------------------------
1 | // Icon Sizes
2 | // -------------------------
3 |
4 | /* makes the font 33% larger relative to the icon container */
5 | .#{$fa-css-prefix}-lg {
6 | font-size: (4em / 3);
7 | line-height: (3em / 4);
8 | vertical-align: -15%;
9 | }
10 | .#{$fa-css-prefix}-2x { font-size: 2em; }
11 | .#{$fa-css-prefix}-3x { font-size: 3em; }
12 | .#{$fa-css-prefix}-4x { font-size: 4em; }
13 | .#{$fa-css-prefix}-5x { font-size: 5em; }
14 |
--------------------------------------------------------------------------------
/waveform-django/static/font-awesome/scss/_list.scss:
--------------------------------------------------------------------------------
1 | // List Icons
2 | // -------------------------
3 |
4 | .#{$fa-css-prefix}-ul {
5 | padding-left: 0;
6 | margin-left: $fa-li-width;
7 | list-style-type: none;
8 | > li { position: relative; }
9 | }
10 | .#{$fa-css-prefix}-li {
11 | position: absolute;
12 | left: -$fa-li-width;
13 | width: $fa-li-width;
14 | top: (2em / 14);
15 | text-align: center;
16 | &.#{$fa-css-prefix}-lg {
17 | left: -$fa-li-width + (4em / 14);
18 | }
19 | }
20 |
--------------------------------------------------------------------------------
/waveform-django/static/font-awesome/scss/_mixins.scss:
--------------------------------------------------------------------------------
1 | // Mixins
2 | // --------------------------
3 |
4 | @mixin fa-icon() {
5 | display: inline-block;
6 | font: normal normal normal #{$fa-font-size-base}/#{$fa-line-height-base} FontAwesome; // shortening font declaration
7 | font-size: inherit; // can't have font-size inherit on line above, so need to override
8 | text-rendering: auto; // optimizelegibility throws things off #1094
9 | -webkit-font-smoothing: antialiased;
10 | -moz-osx-font-smoothing: grayscale;
11 |
12 | }
13 |
14 | @mixin fa-icon-rotate($degrees, $rotation) {
15 | -ms-filter: "progid:DXImageTransform.Microsoft.BasicImage(rotation=#{$rotation})";
16 | -webkit-transform: rotate($degrees);
17 | -ms-transform: rotate($degrees);
18 | transform: rotate($degrees);
19 | }
20 |
21 | @mixin fa-icon-flip($horiz, $vert, $rotation) {
22 | -ms-filter: "progid:DXImageTransform.Microsoft.BasicImage(rotation=#{$rotation}, mirror=1)";
23 | -webkit-transform: scale($horiz, $vert);
24 | -ms-transform: scale($horiz, $vert);
25 | transform: scale($horiz, $vert);
26 | }
27 |
28 |
29 | // Only display content to screen readers. A la Bootstrap 4.
30 | //
31 | // See: http://a11yproject.com/posts/how-to-hide-content/
32 |
33 | @mixin sr-only {
34 | position: absolute;
35 | width: 1px;
36 | height: 1px;
37 | padding: 0;
38 | margin: -1px;
39 | overflow: hidden;
40 | clip: rect(0,0,0,0);
41 | border: 0;
42 | }
43 |
44 | // Use in conjunction with .sr-only to only display content when it's focused.
45 | //
46 | // Useful for "Skip to main content" links; see http://www.w3.org/TR/2013/NOTE-WCAG20-TECHS-20130905/G1
47 | //
48 | // Credit: HTML5 Boilerplate
49 |
50 | @mixin sr-only-focusable {
51 | &:active,
52 | &:focus {
53 | position: static;
54 | width: auto;
55 | height: auto;
56 | margin: 0;
57 | overflow: visible;
58 | clip: auto;
59 | }
60 | }
61 |
--------------------------------------------------------------------------------
/waveform-django/static/font-awesome/scss/_path.scss:
--------------------------------------------------------------------------------
1 | /* FONT PATH
2 | * -------------------------- */
3 |
4 | @font-face {
5 | font-family: 'FontAwesome';
6 | src: url('#{$fa-font-path}/fontawesome-webfont.eot?v=#{$fa-version}');
7 | src: url('#{$fa-font-path}/fontawesome-webfont.eot?#iefix&v=#{$fa-version}') format('embedded-opentype'),
8 | url('#{$fa-font-path}/fontawesome-webfont.woff2?v=#{$fa-version}') format('woff2'),
9 | url('#{$fa-font-path}/fontawesome-webfont.woff?v=#{$fa-version}') format('woff'),
10 | url('#{$fa-font-path}/fontawesome-webfont.ttf?v=#{$fa-version}') format('truetype'),
11 | url('#{$fa-font-path}/fontawesome-webfont.svg?v=#{$fa-version}#fontawesomeregular') format('svg');
12 | // src: url('#{$fa-font-path}/FontAwesome.otf') format('opentype'); // used when developing fonts
13 | font-weight: normal;
14 | font-style: normal;
15 | }
16 |
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/waveform-django/static/font-awesome/scss/_rotated-flipped.scss:
--------------------------------------------------------------------------------
1 | // Rotated & Flipped Icons
2 | // -------------------------
3 |
4 | .#{$fa-css-prefix}-rotate-90 { @include fa-icon-rotate(90deg, 1); }
5 | .#{$fa-css-prefix}-rotate-180 { @include fa-icon-rotate(180deg, 2); }
6 | .#{$fa-css-prefix}-rotate-270 { @include fa-icon-rotate(270deg, 3); }
7 |
8 | .#{$fa-css-prefix}-flip-horizontal { @include fa-icon-flip(-1, 1, 0); }
9 | .#{$fa-css-prefix}-flip-vertical { @include fa-icon-flip(1, -1, 2); }
10 |
11 | // Hook for IE8-9
12 | // -------------------------
13 |
14 | :root .#{$fa-css-prefix}-rotate-90,
15 | :root .#{$fa-css-prefix}-rotate-180,
16 | :root .#{$fa-css-prefix}-rotate-270,
17 | :root .#{$fa-css-prefix}-flip-horizontal,
18 | :root .#{$fa-css-prefix}-flip-vertical {
19 | filter: none;
20 | }
21 |
--------------------------------------------------------------------------------
/waveform-django/static/font-awesome/scss/_screen-reader.scss:
--------------------------------------------------------------------------------
1 | // Screen Readers
2 | // -------------------------
3 |
4 | .sr-only { @include sr-only(); }
5 | .sr-only-focusable { @include sr-only-focusable(); }
6 |
--------------------------------------------------------------------------------
/waveform-django/static/font-awesome/scss/_stacked.scss:
--------------------------------------------------------------------------------
1 | // Stacked Icons
2 | // -------------------------
3 |
4 | .#{$fa-css-prefix}-stack {
5 | position: relative;
6 | display: inline-block;
7 | width: 2em;
8 | height: 2em;
9 | line-height: 2em;
10 | vertical-align: middle;
11 | }
12 | .#{$fa-css-prefix}-stack-1x, .#{$fa-css-prefix}-stack-2x {
13 | position: absolute;
14 | left: 0;
15 | width: 100%;
16 | text-align: center;
17 | }
18 | .#{$fa-css-prefix}-stack-1x { line-height: inherit; }
19 | .#{$fa-css-prefix}-stack-2x { font-size: 2em; }
20 | .#{$fa-css-prefix}-inverse { color: $fa-inverse; }
21 |
--------------------------------------------------------------------------------
/waveform-django/static/font-awesome/scss/font-awesome.scss:
--------------------------------------------------------------------------------
1 | /*!
2 | * Font Awesome 4.7.0 by @davegandy - http://fontawesome.io - @fontawesome
3 | * License - http://fontawesome.io/license (Font: SIL OFL 1.1, CSS: MIT License)
4 | */
5 |
6 | @import "variables";
7 | @import "mixins";
8 | @import "path";
9 | @import "core";
10 | @import "larger";
11 | @import "fixed-width";
12 | @import "list";
13 | @import "bordered-pulled";
14 | @import "animated";
15 | @import "rotated-flipped";
16 | @import "stacked";
17 | @import "icons";
18 | @import "screen-reader";
19 |
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/waveform-django/static/interface.mp4:
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/waveform-django/static/jquery-ui/LICENSE.txt:
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1 | Copyright jQuery Foundation and other contributors, https://jquery.org/
2 |
3 | This software consists of voluntary contributions made by many
4 | individuals. For exact contribution history, see the revision history
5 | available at https://github.com/jquery/jquery-ui
6 |
7 | The following license applies to all parts of this software except as
8 | documented below:
9 |
10 | ====
11 |
12 | Permission is hereby granted, free of charge, to any person obtaining
13 | a copy of this software and associated documentation files (the
14 | "Software"), to deal in the Software without restriction, including
15 | without limitation the rights to use, copy, modify, merge, publish,
16 | distribute, sublicense, and/or sell copies of the Software, and to
17 | permit persons to whom the Software is furnished to do so, subject to
18 | the following conditions:
19 |
20 | The above copyright notice and this permission notice shall be
21 | included in all copies or substantial portions of the Software.
22 |
23 | THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
24 | EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
25 | MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
26 | NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE
27 | LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION
28 | OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION
29 | WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
30 |
31 | ====
32 |
33 | Copyright and related rights for sample code are waived via CC0. Sample
34 | code is defined as all source code contained within the demos directory.
35 |
36 | CC0: http://creativecommons.org/publicdomain/zero/1.0/
37 |
38 | ====
39 |
40 | All files located in the node_modules and external directories are
41 | externally maintained libraries used by this software which have their
42 | own licenses; we recommend you read them, as their terms may differ from
43 | the terms above.
44 |
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/waveform-django/static/jquery-ui/package.json:
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1 | {
2 | "name": "jquery-ui",
3 | "title": "jQuery UI",
4 | "description": "A curated set of user interface interactions, effects, widgets, and themes built on top of the jQuery JavaScript Library.",
5 | "version": "1.13.0",
6 | "homepage": "http://jqueryui.com",
7 | "author": {
8 | "name": "jQuery Foundation and other contributors",
9 | "url": "https://github.com/jquery/jquery-ui/blob/1.13.0/AUTHORS.txt"
10 | },
11 | "main": "ui/widget.js",
12 | "maintainers": [
13 | {
14 | "name": "Jörn Zaefferer",
15 | "email": "joern.zaefferer@gmail.com",
16 | "url": "http://bassistance.de"
17 | },
18 | {
19 | "name": "Mike Sherov",
20 | "email": "mike.sherov@gmail.com",
21 | "url": "http://mike.sherov.com"
22 | },
23 | {
24 | "name": "TJ VanToll",
25 | "email": "tj.vantoll@gmail.com",
26 | "url": "http://tjvantoll.com"
27 | },
28 | {
29 | "name": "Felix Nagel",
30 | "email": "info@felixnagel.com",
31 | "url": "http://www.felixnagel.com"
32 | },
33 | {
34 | "name": "Alex Schmitz",
35 | "email": "arschmitz@gmail.com",
36 | "url": "https://github.com/arschmitz"
37 | }
38 | ],
39 | "repository": {
40 | "type": "git",
41 | "url": "git://github.com/jquery/jquery-ui.git"
42 | },
43 | "bugs": "https://bugs.jqueryui.com/",
44 | "license": "MIT",
45 | "scripts": {
46 | "test": "grunt"
47 | },
48 | "dependencies": {
49 | "jquery": ">=1.8.0 <4.0.0"
50 | },
51 | "devDependencies": {
52 | "commitplease": "3.2.0",
53 | "eslint-config-jquery": "3.0.0",
54 | "glob": "7.1.7",
55 | "grunt": "1.4.1",
56 | "grunt-bowercopy": "1.2.5",
57 | "grunt-cli": "1.4.3",
58 | "grunt-compare-size": "0.4.2",
59 | "grunt-contrib-concat": "1.0.1",
60 | "grunt-contrib-csslint": "2.0.0",
61 | "grunt-contrib-qunit": "5.0.1",
62 | "grunt-contrib-requirejs": "1.0.0",
63 | "grunt-contrib-uglify": "5.0.1",
64 | "grunt-eslint": "23.0.0",
65 | "grunt-git-authors": "3.2.0",
66 | "grunt-html": "14.5.0",
67 | "load-grunt-tasks": "5.1.0",
68 | "rimraf": "3.0.2",
69 | "testswarm": "1.1.2"
70 | },
71 | "keywords": []
72 | }
73 |
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/waveform-django/templates/base.html:
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1 |
2 | {% load static %}
3 |
4 |
5 |
6 |
42 |
43 | User: {{user.username}}... Logout
44 |
45 |
46 |
136 |
137 | {% endblock %}
138 |
139 | {% block body %}
140 |
141 | |
50 |
51 |
54 |
55 | |
56 | {% endif %}
57 | {% if user.is_adjudicator %}
58 |
59 |
60 |
63 |
67 |
68 | |
69 | {% endif %}
70 |
71 |
72 |
81 |
82 | |
83 |
84 |
85 |
94 |
95 | |
96 | {% url 'leaderboard' as url %}
97 |
98 |
99 |
102 |
103 | |
104 | {% url 'practice_test' as url %}
105 |
106 |
107 |
116 |
117 | |
118 | {% url 'viewer_tutorial' as url %}
119 |
120 |
121 |
124 |
125 | |
126 | {% url 'viewer_settings' as url %}
127 |
128 |
129 |
132 |
133 | |
134 |
|---|
7 |
169 | {% endfor %} 170 |
171 |
224 | {% endfor %} 225 |
226 | All Adjudications
8 |
9 | Total Complete
10 | {{ all_anns_frac }}
11 |
12 |
13 | 12 |
14 |
69 | {% endfor %} 70 | {% elif k == "inc" %} 71 | {% for batch in info %} 72 |
98 | {% endfor %} 99 | {% endif %} 100 | {% endfor %} 101 | {% endif %} 102 |
103 | Search for record
15 | {% if messages %} 16 | 21 | {% endif %} 22 | 26 | {% if search %} 27 | {% for k,info in search.items %} 28 | {% if k == "com" %} 29 | {% for batch in info %} 30 |
31 |
32 |
33 |
67 |
68 | | 36 | {{ cat }} 37 | | 38 | {% endfor %} 39 | 40 |41 | Edit adjudication 42 | | 43 |44 | Delete adjudication 45 | | 46 |
|---|---|---|
| 54 | {{ v }} 55 | | 56 | {% endfor %} 57 | {% else %} 58 | {% for v in val|slice:"2:" %} 59 |60 | {{ v }} 61 | | 62 | {% endfor %} 63 | {% endif %} 64 |
69 | {% endfor %} 70 | {% elif k == "inc" %} 71 | {% for batch in info %} 72 |
73 |
74 |
75 |
96 |
97 | | 78 | {{ cat }} 79 | | 80 | {% endfor %} 81 |82 | Edit adjudication 83 | | 84 |
|---|---|
| 90 | {{ v }} 91 | | 92 | {% endfor %} 93 |
98 | {% endfor %} 99 | {% endif %} 100 | {% endfor %} 101 | {% endif %} 102 |
104 |
106 | {% if complete_page %}
107 | Complete Adjudications
105 |
108 | {% if complete_page.has_previous %}
109 | Previous Page
110 | {% endif %}
111 | {% if complete_page.has_next %}
112 | Next Page
113 | {% endif %}
114 | {% if request.GET %}
115 | {% if request.GET.complete_page == 'all' %}
116 | Show pages
117 | {% else %}
118 | {% if n_complete > 5 %}
119 | Show all
120 | {% endif %}
121 | {% endif %}
122 | {% else %}
123 | {% if n_complete > 5 %}
124 | Show all
125 | {% endif %}
126 | {% endif %}
127 |
128 | {% endif %}
129 | {% for batch in complete_adjudications %}
130 |
131 |
132 |
133 |
167 |
168 | | 136 | {{ cat }} 137 | | 138 | {% endfor %} 139 | 140 |141 | Edit adjudication 142 | | 143 |144 | Delete adjudication 145 | | 146 |
|---|---|---|
| 154 | {{ v }} 155 | | 156 | {% endfor %} 157 | {% else %} 158 | {% for v in val|slice:"2:" %} 159 |160 | {{ v }} 161 | | 162 | {% endfor %} 163 | {% endif %} 164 |
169 | {% endfor %} 170 |
171 |
172 |
174 | {% if incomplete_page %}
175 | Incomplete Adjudications
173 |
176 | {% if incomplete_page.has_previous %}
177 | Previous Page
178 | {% endif %}
179 | {% if incomplete_page.has_next %}
180 | Next Page
181 | {% endif %}
182 | {% if request.GET %}
183 | {% if request.GET.incomplete_page == 'all' %}
184 | Show pages
185 | {% else %}
186 | {% if n_incomplete > 5 %}
187 | Show all
188 | {% endif %}
189 | {% endif %}
190 | {% else %}
191 | {% if n_incomplete > 5 %}
192 | Show all
193 | {% endif %}
194 | {% endif %}
195 |
196 | {% endif %}
197 | {% for batch in incomplete_adjudications %}
198 |
199 |
200 |
201 |
222 |
223 | | 204 | {{ cat }} 205 | | 206 | {% endfor %} 207 |208 | Edit adjudication 209 | | 210 |
|---|---|
| 216 | {{ v }} 217 | | 218 | {% endfor %} 219 |
224 | {% endfor %} 225 |
227 | 228 | {% endblock %} 229 | -------------------------------------------------------------------------------- /waveform-django/waveforms/templates/waveforms/adjudicator_console.html: -------------------------------------------------------------------------------- 1 | {% extends "base.html" %} 2 | {% load static %} 3 | {% load plotly_dash %} 4 | {% block content %} 5 | 14 | 15 | 16 |
17 |
28 |
29 |
66 | {% endblock %}
67 |
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/waveform-django/waveforms/templates/waveforms/admin_console.html:
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1 | {% extends "base.html" %}
2 | {% load static %}
3 |
4 | {% block content %}
5 |
6 | Adjudicator Console
18 | 19 | 20 | 23 | 24 |
25 | {% plotly_app_bootstrap name='waveform_graph_adjudicate' initial_arguments=dash_context %}
26 |
27 |
7 |
9 | 13 |
14 |
Admin Console
8 |9 | 13 |
14 |
All Users
15 |
16 | {% if messages %}
17 | {% for message in messages %}
18 | {% if message.level == DEFAULT_MESSAGE_LEVELS.ERROR %}
19 |
20 | {% elif message.level == DEFAULT_MESSAGE_LEVELS.INFO %}
21 |
177 | {% for evt,nfo in info.items %} 178 |
180 |
197 | {% endfor %} 198 |
199 | {% endif %} 200 |
201 | {% endfor %} 202 | {% endfor %} 203 | {% for project,k in unanimous_anns.items %} 204 |
219 | {% for evt,nfo in info.items %} 220 |
222 |
239 | {% endfor %} 240 |
241 | {% endif %} 242 |
243 | {% endfor %} 244 | {% endfor %} 245 | {% for project,k in all_anns.items %} 246 |
262 | {% for evt,nfo in info.items %} 263 |
265 |
282 | {% endfor %} 283 |
284 | {% endif %} 285 |
286 | {% endfor %} 287 | {% endfor %} 288 |
289 |
290 | {% endblock %}
291 |
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/waveform-django/waveforms/templates/waveforms/home.html:
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1 | {% extends "base.html" %}
2 | {% load static %}
3 | {% load plotly_dash %}
4 | {% block content %}
5 |
14 |
15 |
16 |
22 | {% else %}
23 |
61 |
76 |
77 |
79 |
102 |
103 | 104 |
106 |
159 |
160 |
161 | {% for project,k in conflict_anns.items %}
162 |
24 | {% endif %}
25 |
28 | {{ message|safe }}
29 |
30 | {% endfor %}
31 | {% endif %}
32 | Invite a new user by email address
33 | 59 |Invited users
60 || Last Invite Date | 64 |Joined | 65 |Joined Username | 66 ||
|---|---|---|---|
| {{ u.email }} | 70 |{{ u.last_invite_date }} | 71 |{{ u.joined }} | 72 |{{ u.joined_username }} | 73 |
77 |
Active Assignments
78 || Username | 81 |Events Remaining | 82 |Assignment Start Date | 83 |84 | |
|---|---|---|---|
| {{ u.username }} | 89 |{{ u.events_remaining }} | 90 |{{ u.date_assigned }} | 91 |92 | 97 | | 98 |
103 | 104 |
Joined users
105 || Username | 108 |Join Date | 109 |Last Login | 110 |Total Number of Annotations (across all projects) | 111 |New Settings <{field: [default,user set], ...}> | 112 |Adjudicator Control | 113 |Admin Control | 114 |
|---|---|---|---|---|---|---|
| {{ u.username }} | 118 |{{ u.join_date }} | 119 |{{ u.last_login }} | 120 |{{ u.num_annotations }} | 121 |{{ u.new_settings }} | 122 |
123 | {% if u.is_adjudicator %}
124 |
125 |
129 |
130 | {% else %}
131 |
132 |
136 |
137 | {% endif %}
138 | |
139 |
140 | {% if u.is_admin %}
141 |
142 |
146 |
147 | {% else %}
148 |
149 |
153 |
154 | {% endif %}
155 | |
156 |
160 |
Project: {{ project }}
163 |Conflicting Annotations
164 | 165 |
166 | {% if k.has_previous %}
167 | Previous Page
168 | {% endif %}
169 | {% if k.has_next %}
170 | Next Page
171 | {% endif %}
172 |
173 |
174 | {% for rec,info in k %}
175 | {% if info|length > 0 %}
176 | Record: {{ rec }}
177 | {% for evt,nfo in info.items %} 178 |
Event: {{ evt }} (View waveform )
179 || 183 | {{ cat }} 184 | | 185 | {% endfor %} 186 |
|---|
| 191 | {{ v }} 192 | | 193 | {% endfor %} 194 |
197 | {% endfor %} 198 |
199 | {% endif %} 200 |
201 | {% endfor %} 202 | {% endfor %} 203 | {% for project,k in unanimous_anns.items %} 204 |
Project: {{ project }}
205 |Unanimous Annotations
206 | 207 |
208 | {% if k.has_previous %}
209 | Previous Page
210 | {% endif %}
211 | {% if k.has_next %}
212 | Next Page
213 | {% endif %}
214 |
215 |
216 | {% for rec,info in k %}
217 | {% if info|length > 0 %}
218 | Record: {{ rec }}
219 | {% for evt,nfo in info.items %} 220 |
Event: {{ evt }} (View waveform )
221 || 225 | {{ cat }} 226 | | 227 | {% endfor %} 228 |
|---|
| 233 | {{ v }} 234 | | 235 | {% endfor %} 236 |
239 | {% endfor %} 240 |
241 | {% endif %} 242 |
243 | {% endfor %} 244 | {% endfor %} 245 | {% for project,k in all_anns.items %} 246 |
Project: {{ project }}
247 |Unfinished Annotations
248 | 249 |
250 | {% if k.has_previous %}
251 | Previous Page
252 | {% endif %}
253 | {% if k.has_next %}
254 | Next Page
255 | {% endif %}
256 |
257 |
258 |
259 | {% for rec,info in k %}
260 | {% if info|length > 0 %}
261 | Record: {{ rec }}
262 | {% for evt,nfo in info.items %} 263 |
Event: {{ evt }} (View waveform )
264 || 268 | {{ cat }} 269 | | 270 | {% endfor %} 271 |
|---|
| 276 | {{ v }} 277 | | 278 | {% endfor %} 279 |
282 | {% endfor %} 283 |
284 | {% endif %} 285 |
286 | {% endfor %} 287 | {% endfor %} 288 |
17 |
18 |
19 |
22 |
23 |
27 |
28 |
65 | {% endblock %}
66 |
--------------------------------------------------------------------------------
/waveform-django/waveforms/templates/waveforms/practice.html:
--------------------------------------------------------------------------------
1 | {% extends "base.html" %}
2 | {% load static %}
3 |
4 | {% block content %}
5 |
24 | {% plotly_app_bootstrap name='waveform_graph' initial_arguments=dash_context %}
25 |
26 |
6 |
17 |
45 | {% endblock %}
46 |
--------------------------------------------------------------------------------
/waveform-django/waveforms/templates/waveforms/settings.html:
--------------------------------------------------------------------------------
1 | {% extends "base.html" %}
2 | {% load static %}
3 |
4 | {% block content %}
5 | Answer practice questions
7 |
8 |
10 | Instructions
9 |-
11 |
- You will be assigned a set of {{ total }} waveform events to complete. 12 |
- You can come return to this page whenever you are ready to view the answers. 13 |
- This assessment will not be timed or graded, and may be exited at any time by pressing the "End Practice" button below. 14 |
- When you wish to continue working on the main dataset, simply press the "End Practice" button below. You will resume working on your active assignment. 15 |
- You may take the practice test as many times as you wish, but your score will be lost after you end the practice session. 16 |
18 | {% if user.practice_status == "CO" %}
19 |
31 | Results
20 | {% for project,events in results.items %} 21 | {% for event,responses in events.items %} 22 |23 | {{ project }} {{ event }} Correct answer: {{ responses.0 }} Your answer: {{ responses.1 }} 24 | {% if responses.0 == responses.1 %} ✔️ {% else %} ❌ {% endif %} 25 |
26 | {% endfor %} 27 | {% endfor %} 28 |Score: {{ correct }}/{{ total }}
29 | {% endif %} 30 |
32 |
43 |
44 |
6 |
8 | {% if messages %} 9 | {% for message in messages %} 10 | {% if message.level == DEFAULT_MESSAGE_LEVELS.ERROR %} 11 |
Form to change graph settings
7 |8 | {% if messages %} 9 | {% for message in messages %} 10 | {% if message.level == DEFAULT_MESSAGE_LEVELS.ERROR %} 11 |
12 | {% elif message.level == DEFAULT_MESSAGE_LEVELS.INFO %}
13 |
61 | {% endblock %} 62 | -------------------------------------------------------------------------------- /waveform-django/waveforms/templates/waveforms/tutorial.html: -------------------------------------------------------------------------------- 1 | {% extends "base.html" %} 2 | {% load static %} 3 | 4 | {% block content %} 5 |///', views.waveform_published_home, name='waveform_published_specific'),
13 | path('adjudicate////', views.adjudicator_console, name='waveform_published_specific_adjudicate'),
14 | path('adjudications/', views.render_adjudications, name='render_adjudications'),
15 | path('adjudications/delete////', views.delete_adjudication, name='delete_adjudication'),
16 | path('admin_console/', views.admin_console, name='admin_console'),
17 | path('adjudicator_console/', views.adjudicator_console, name='adjudicator_console'),
18 | path('annotations/', views.render_annotations, name='render_annotations'),
19 | path('annotations/delete////', views.delete_annotation, name='delete_annotation'),
20 | path('leaderboard/', views.leaderboard, name='leaderboard'),
21 | path('tutorial/', views.viewer_tutorial, name='viewer_tutorial'),
22 | path('practice/', views.practice_test, name='practice_test'),
23 | path('settings/', views.viewer_settings, name='viewer_settings'),
24 | ]
25 |
--------------------------------------------------------------------------------
/waveform-django/website/__init__.py:
--------------------------------------------------------------------------------
https://raw.githubusercontent.com/MIT-LCP/waveform-annotation/85f199f421ea0475eddc73bdd46fabeb494afd50/waveform-django/website/__init__.py
--------------------------------------------------------------------------------
/waveform-django/website/forms.py:
--------------------------------------------------------------------------------
1 | from django import forms
2 | from django.contrib.auth.forms import UserCreationForm, UsernameField
3 | from django.contrib.auth.models import User as d_User
4 | from django.contrib.sites.shortcuts import get_current_site
5 | from django.core.exceptions import ValidationError
6 | from django.core.mail import EmailMultiAlternatives
7 | from django.template import loader
8 | from django.utils.encoding import force_bytes
9 | from django.utils.http import urlsafe_base64_encode
10 | from django.utils.translation import gettext_lazy as _
11 |
12 | from waveforms.models import User
13 | from website.tokens import password_reset_token
14 |
15 |
16 | class CreateUserForm(UserCreationForm):
17 | """
18 | For creating a new user.
19 | """
20 | class Meta:
21 | model = d_User
22 | fields = ['username', 'email', 'password1', 'password2']
23 |
24 |
25 | class ResetPasswordForm(forms.Form):
26 | """
27 | For changing the user's password.
28 | """
29 | username = UsernameField(
30 | widget = forms.TextInput(attrs={'autofocus': True})
31 | )
32 | email = forms.EmailField(
33 | label=_('Email'),
34 | max_length=254,
35 | widget=forms.EmailInput(attrs={'autocomplete': 'email'})
36 | )
37 | class Meta:
38 | model = User
39 | fields = ['username', 'email']
40 |
41 | def clean(self):
42 | """
43 | Check for any invalid values that may break the code later.
44 |
45 | Parameters
46 | ----------
47 | N/A
48 |
49 | Returns
50 | -------
51 | N/A
52 |
53 | """
54 | if self.errors:
55 | return
56 |
57 | user = self.get_user(self.cleaned_data['username'])
58 | if self.cleaned_data['email'] != user.email:
59 | raise forms.ValidationError("""That email does not match the email
60 | for that username's account""")
61 |
62 | def send_mail(self, subject_template_name, email_template_name, context,
63 | from_email, to_email, html_email_template_name=None):
64 | """
65 | Send a django.core.mail.EmailMultiAlternatives to `to_email`.
66 |
67 | Parameters
68 | ----------
69 | subject_template_name : str
70 | The template for the email subject.
71 | email_template_name : str
72 | The template for the email.
73 | context : str
74 | The extra information (headers) needed for the email.
75 | from_email : str
76 | The email of the sender.
77 | to_email : str
78 | The email of the receiver.
79 | html_email_template_name : str, optional
80 | The template for the HTML email.
81 |
82 | Returns
83 | -------
84 | N/A
85 |
86 | """
87 | subject = loader.render_to_string(subject_template_name, context)
88 | # Email subject *must not* contain newlines
89 | subject = ''.join(subject.splitlines())
90 | body = loader.render_to_string(email_template_name, context)
91 |
92 | email_message = EmailMultiAlternatives(subject, body, from_email,
93 | [to_email])
94 | if html_email_template_name is not None:
95 | html_email = loader.render_to_string(html_email_template_name,
96 | context)
97 | email_message.attach_alternative(html_email, 'text/html')
98 |
99 | email_message.send()
100 |
101 | def get_user(self, username):
102 | """
103 | Given a username, return matching user who should receive a reset.
104 |
105 | Parameters
106 | ----------
107 | username : str
108 | The user's username.
109 |
110 | Returns
111 | -------
112 | user : User object
113 | The object from the User model that matches the requested
114 | username.
115 |
116 | """
117 | try:
118 | user = User.objects.get(username__exact=username)
119 | return user
120 | except User.DoesNotExist:
121 | self.add_error(
122 | 'username',
123 | ValidationError(_('That username was not found'),
124 | code='invalid')
125 | )
126 | return None
127 |
128 | def save(self, domain_override=None,
129 | subject_template_name='registration/password_reset_subject.txt',
130 | email_template_name='registration/password_reset_email.html',
131 | from_email=None, request=None, html_email_template_name=None,
132 | extra_email_context=None):
133 | """
134 | Generate a one-use only link for resetting password and send it to the
135 | user.
136 |
137 | Parameters
138 | ----------
139 | domain_override : str, optional
140 | The name of the site.
141 | subject_template_name : str, optional
142 | The template for the email subject.
143 | email_template_name : str, optional
144 | The template for the email.
145 | from_email : str, optional
146 | The email of the sender.
147 | request : Request object, optional
148 | The current HTTP request.
149 | html_email_template_name : str, optional
150 | The template for the HTML email.
151 | extra_email_context : str, optional
152 | The extra information (headers) needed for the email.
153 |
154 | Returns
155 | -------
156 | N/A
157 |
158 | """
159 | username = self.cleaned_data['username']
160 | email = self.cleaned_data['email']
161 | user = self.get_user(username)
162 |
163 | if not domain_override:
164 | current_site = get_current_site(request)
165 | site_name = current_site.name
166 | domain = current_site.domain
167 | else:
168 | site_name = domain = domain_override
169 |
170 | context = {
171 | 'email': email,
172 | 'domain': domain,
173 | 'site_name': site_name,
174 | 'uid': urlsafe_base64_encode(force_bytes(user.pk)),
175 | 'user': user,
176 | 'token': password_reset_token.make_token(user),
177 | 'protocol': 'http' if domain.startswith('localhost') else 'https',
178 | **(extra_email_context or {}),
179 | }
180 | self.send_mail(
181 | subject_template_name, email_template_name, context, from_email,
182 | email, html_email_template_name=html_email_template_name
183 | )
184 |
185 |
186 | class ChangePasswordForm(forms.Form):
187 | """
188 | The form to change the user's password.
189 | """
190 | username = UsernameField(
191 | widget = forms.TextInput(attrs={'autofocus': True})
192 | )
193 | password1 = forms.CharField(label=_('Password'),
194 | widget=forms.PasswordInput
195 | )
196 | password2 = forms.CharField(label=_('Password'),
197 | widget=forms.PasswordInput
198 | )
199 | class Meta:
200 | model = User
201 | fields = []
202 |
203 | def clean(self):
204 | """
205 | Check for any invalid values that may break the code later.
206 |
207 | Parameters
208 | ----------
209 | N/A
210 |
211 | Returns
212 | -------
213 | N/A
214 |
215 | """
216 | if self.errors:
217 | return
218 |
219 | if self.cleaned_data['password1'] != self.cleaned_data['password2']:
220 | raise forms.ValidationError("""Your two passwords do not
221 | match. Please try again.""")
222 |
223 | def save(self):
224 | """
225 | Save the new user's password.
226 |
227 | Parameters
228 | ----------
229 | N/A
230 |
231 | Returns
232 | -------
233 | N/A
234 |
235 | """
236 | user = d_User.objects.get(username__exact=self.cleaned_data['username'])
237 | user.set_password(self.cleaned_data['password1'])
238 | user.save()
239 |
--------------------------------------------------------------------------------
/waveform-django/website/middleware.py:
--------------------------------------------------------------------------------
1 | from __future__ import absolute_import, division, print_function
2 |
3 | try:
4 | from threading import local
5 | except ImportError:
6 | from django.utils._threading_local import local
7 |
8 | _thread_locals = local()
9 |
10 |
11 | def get_current_request():
12 | """ returns the request object for this thread """
13 | return getattr(_thread_locals, "request", None)
14 |
15 |
16 | def get_current_user():
17 | """ returns the current user, if exist, otherwise returns None """
18 | request = get_current_request()
19 | if request:
20 | temp_user = getattr(request, "user", None)
21 | return temp_user.username
22 |
23 |
24 | def thread_local_middleware(get_response):
25 | # One-time configuration and initialization.
26 | def middleware(request):
27 | # Code to be executed for each request before
28 | # the view (and later middleware) are called.
29 | _thread_locals.request = request
30 | response = get_response(request)
31 | # Code to be executed for each request/response after
32 | # the view is called.
33 | if hasattr(_thread_locals, "request"):
34 | del _thread_locals.request
35 | return response
36 | return middleware
37 |
--------------------------------------------------------------------------------
/waveform-django/website/settings/base.py:
--------------------------------------------------------------------------------
1 | """
2 | Django settings for waveform annotation project.
3 |
4 | Generated by 'django-admin startproject' using Django 1.11.5.
5 |
6 | For more information on this file, see
7 | https://docs.djangoproject.com/en/1.11/topics/settings/
8 |
9 | For the full list of settings and their values, see
10 | https://docs.djangoproject.com/en/1.11/ref/settings/
11 | """
12 | import os
13 |
14 | from decouple import config
15 |
16 | # Basic settings based on development environment
17 | DEBUG = config('DEBUG', default=False, cast=bool)
18 | CACHE = config('CACHE', default=False, cast=bool)
19 | SESSION_COOKIE_SECURE = False
20 | SESSION_ENGINE = 'django.contrib.sessions.backends.cached_db'
21 |
22 | ALLOWED_HOSTS = ['*']
23 |
24 | def custom_show_toolbar(request):
25 | return True
26 |
27 | DEBUG_TOOLBAR_CONFIG = {
28 | 'JQUERY_URL': '',
29 | # 'SHOW_TOOLBAR_CALLBACK': custom_show_toolbar,
30 | }
31 |
32 | # Build paths inside the project like this: os.path.join(BASE_DIR, ...)
33 | PROJECT_DIR = os.path.dirname(os.path.dirname(os.path.abspath(__file__)))
34 | BASE_DIR = os.path.dirname(PROJECT_DIR)
35 | HEAD_DIR = os.path.dirname(BASE_DIR)
36 | LOGIN_URL = 'login'
37 |
38 | # For password resets
39 | # Check output in another terminal window here:
40 | # python -m smtpd -n -c DebuggingServer localhost:1025
41 | EMAIL_BACKEND = 'django.core.mail.backends.smtp.EmailBackend'
42 | EMAIL_HOST = config('EMAIL_HOST', default='localhost')
43 | EMAIL_PORT = config('EMAIL_PORT', default=1025, cast=int)
44 | EMAIL_HOST_USER = ''
45 | EMAIL_HOST_PASSWORD = ''
46 | EMAIL_USE_TLS = False
47 | EMAIL_FROM = 'help@waveform-annotation.com'
48 |
49 | # Quick-start development settings - unsuitable for production
50 | # See https://docs.djangoproject.com/en/1.11/howto/deployment/checklist/
51 |
52 | SECRET_KEY = config('SECRET_KEY')
53 |
54 | # Application definition
55 | INSTALLED_APPS = [
56 | 'django_crontab',
57 | 'debug_toolbar',
58 | 'django.contrib.auth',
59 | 'django.contrib.contenttypes',
60 | 'django.contrib.staticfiles',
61 | 'django_plotly_dash.apps.DjangoPlotlyDashConfig',
62 | 'django.contrib.sessions',
63 | 'django.contrib.messages',
64 |
65 | 'graphene_django',
66 |
67 | 'export',
68 | 'waveforms',
69 | 'website'
70 | ]
71 |
72 | MIDDLEWARE = [
73 | 'django.middleware.security.SecurityMiddleware',
74 | 'whitenoise.middleware.WhiteNoiseMiddleware',
75 | 'django.contrib.sessions.middleware.SessionMiddleware',
76 | 'django.middleware.common.CommonMiddleware',
77 | 'django.contrib.auth.middleware.AuthenticationMiddleware',
78 | 'django_plotly_dash.middleware.BaseMiddleware',
79 | 'django_plotly_dash.middleware.ExternalRedirectionMiddleware',
80 | 'django.middleware.csrf.CsrfViewMiddleware',
81 | 'django.contrib.sessions.middleware.SessionMiddleware',
82 | 'django.contrib.auth.middleware.AuthenticationMiddleware',
83 | 'django.contrib.messages.middleware.MessageMiddleware',
84 | 'debug_toolbar.middleware.DebugToolbarMiddleware',
85 | 'django.middleware.clickjacking.XFrameOptionsMiddleware',
86 | 'website.middleware.thread_local_middleware'
87 | ]
88 |
89 | DATABASES = {
90 | 'default': {
91 | 'ENGINE': 'django.db.backends.sqlite3',
92 | 'NAME': os.path.join(HEAD_DIR,'db','db.sqlite3')
93 | }
94 | }
95 |
96 | # Cache
97 | if CACHE:
98 | # Requires `redis-server` to be running in another terminal tab
99 | CACHES = {
100 | 'default': {
101 | 'BACKEND': 'django_redis.cache.RedisCache',
102 | 'LOCATION': 'redis://localhost:6379',
103 | 'OPTIONS': {
104 | 'CLIENT_CLASS': 'django_redis.client.DefaultClient'
105 | }
106 | }
107 | }
108 |
109 | # .---------------- minute (0 - 59)
110 | # | .------------- hour (0 - 23)
111 | # | | .---------- day of month (1 - 31)
112 | # | | | .------- month (1 - 12) OR jan,feb,mar,apr ...
113 | # | | | | .---- day of week (0 - 6) (Sunday=0 or 7) OR sun,mon,tue,wed,thu,fri,sat
114 | # | | | | |
115 | # * * * * * user-name command to be executed
116 | CRONJOBS = [
117 | ('0 0 * * *', 'waveform-django.cron.update_annotations')
118 | ]
119 |
120 | ROOT_URLCONF = 'website.urls'
121 |
122 | if not DEBUG:
123 | LOGGING = {
124 | 'version': 1,
125 | 'disable_existing_loggers': False,
126 | 'formatters': {
127 | 'timestamp': {
128 | 'format': '{asctime} {levelname} {message}',
129 | 'style': '{',
130 | },
131 | },
132 | 'handlers': {
133 | 'file': {
134 | 'level': 'DEBUG',
135 | 'class': 'logging.FileHandler',
136 | 'filename': os.path.join(HEAD_DIR, 'debug', 'debug.log'),
137 | 'formatter': 'timestamp'
138 | }
139 | },
140 | 'loggers': {
141 | 'django': {
142 | 'handlers': ['file'],
143 | 'level': 'DEBUG',
144 | },
145 | },
146 | }
147 |
148 | TEMPLATES = [
149 | {
150 | 'BACKEND': 'django.template.backends.django.DjangoTemplates',
151 | 'DIRS': [os.path.join(BASE_DIR,'templates')],
152 | 'APP_DIRS': True,
153 | 'OPTIONS': {
154 | 'context_processors': [
155 | 'django.template.context_processors.debug',
156 | 'django.template.context_processors.request',
157 | 'django.contrib.auth.context_processors.auth',
158 | 'django.contrib.messages.context_processors.messages',
159 | ],
160 | },
161 | },
162 | ]
163 |
164 | X_FRAME_OPTIONS = 'SAMEORIGIN'
165 |
166 | PLOTLY_COMPONENTS = [
167 | 'dash_core_components',
168 | 'dash_html_components',
169 | 'dash_renderer',
170 | 'dpd_components',
171 | 'dpd_static_support',
172 | 'dash_bootstrap_components'
173 | ]
174 |
175 | PLOTLY_DASH = {
176 | # Route used for the message pipe websocket connection
177 | 'ws_route': 'dpd/ws/channel',
178 | # Route used for direct http insertion of pipe messages
179 | 'http_route': 'dpd/views',
180 | # Flag controlling existince of http poke endpoint
181 | 'http_poke_enabled': True,
182 | # Insert data for the demo when migrating
183 | 'insert_demo_migrations': False,
184 | # Timeout for caching of initial arguments in seconds
185 | 'cache_timeout_initial_arguments': 60,
186 | # Name of view wrapping function
187 | 'view_decorator': None,
188 | # Flag to control location of initial argument storage
189 | 'cache_arguments': CACHE,
190 | # Flag controlling local serving of assets
191 | 'serve_locally': False
192 | }
193 |
194 | # Session management
195 |
196 | # Internationalization
197 | # https://docs.djangoproject.com/en/1.11/topics/i18n/
198 |
199 | LANGUAGE_CODE = 'en-us'
200 |
201 | TIME_ZONE = 'America/New_York'
202 |
203 | USE_I18N = True
204 |
205 | USE_L10N = True
206 |
207 | USE_TZ = True
208 |
209 | # Django background tasks max attempts
210 | MAX_ATTEMPTS = 5
211 |
212 | # Static files (CSS, JavaScript, Images)
213 | # https://docs.djangoproject.com/en/1.11/howto/static-files/
214 | #USE_X_FORWARDED_HOST = True
215 | #FORCE_SCRIPT_NAME = '/waveform-annotation'
216 |
217 | if DEBUG:
218 | STATIC_URL = '/static/'
219 | STATIC_ROOT = 'assets'
220 | STATICFILES_DIRS = [os.path.join(BASE_DIR, 'static')]
221 | else:
222 | STATIC_URL = '/waveform-annotation/static/'
223 | STATIC_ROOT = os.path.join(HEAD_DIR, 'static')
224 | STATICFILES_DIRS = [os.path.join(BASE_DIR, 'static')]
225 | STATICFILE_FINDERS = [
226 | 'django.contrib.staticfiles.finder.FileSystemFinder',
227 | 'django.contrib.staticfiles.finder.AppDirectoriesFinder',
228 | 'django_plotly_dash.finders.DashAssetFinder',
229 | 'django_plotly_dash.finders.DashComponentFinder',
230 | 'django_plotly_dash.finders.DashAppDirectoryFinder'
231 | ]
232 | STATICFILES_STORAGE = 'whitenoise.storage.CompressedManifestStaticFilesStorage'
233 |
234 | RECORDS_FILE = 'RECORDS_VTVF_LIMIT-5'
235 | ASSIGNMENT_FILE = 'user_assignments.csv'
236 | ALL_PROJECTS = ['sample_data']
237 |
238 | # Projects in blacklist cannot be automatically assigned to users
239 | BLACKLIST = []
240 |
241 | # The minimum amount of events to assign
242 | MIN_ASSIGNED = 10
243 |
244 | # Events to be used in the practice data set
245 | PRACTICE_SET = {
246 | 'sample_data': {
247 | 'v101l': False,
248 | 'v111l': False,
249 | 'v131l': True,
250 | 'v135l': False,
251 | 'v139l': True
252 | }
253 | }
254 |
255 | # List of permitted HTML tags and attributes for rich text fields.
256 | # The 'default' configuration permits all of the tags below. Other
257 | # configurations may be added that permit different sets of tags.
258 |
259 | # Attributes that can be added to any HTML tag
260 | _generic_attributes = ['lang', 'title']
261 |
--------------------------------------------------------------------------------
/waveform-django/website/templates/registration/invite_user_email.html:
--------------------------------------------------------------------------------
1 | {% autoescape off %}
2 |
3 | Thank you for agreeing to help evaluate our new tool for expert-annotation of
4 | Ventricular Tachycardia (VT) and Ventricular Fibrillation (VF) alarms. We
5 | would like you to classify VT/VF alarms that have been generated by patient
6 | monitors as either “True” or “False”. You will find log-in here:
7 |
8 | {{ protocol }}://{{ domain }}{% url 'register' %}
9 |
10 | You can also find usage instructions here:
11 |
12 | {{ protocol }}://{{ domain }}{% url 'viewer_tutorial' %}
13 |
14 | If clicking any of the links above doesn't work, please copy and paste the URL
15 | in a new browser window instead.
16 |
17 | We would also love to set up a follow-up meeting to hear your feedback and
18 | suggestions for improvement. In particular, we are interested in understanding
19 | whether the tool provides all of the features that you need to perform the
20 | annotation task. If not, what are the specific features that are missing or
21 | could be improved upon? Please comment on usability, resolution, navigation,
22 | etc.
23 |
24 | Thank you again for your collaboration and happy annotating!
25 |
26 | Sincerely,
27 | The MIT VT/VF Annotation Team
28 |
29 | {% endautoescape %}
30 |
--------------------------------------------------------------------------------
/waveform-django/website/templates/registration/invite_user_subject.txt:
--------------------------------------------------------------------------------
1 | {% load i18n %}{% autoescape off %}
2 | {% blocktrans %}Invitation to join {{ site_name }}{% endblocktrans %}
3 | {% endautoescape %}
4 |
--------------------------------------------------------------------------------
/waveform-django/website/templates/registration/new_invite_email.html:
--------------------------------------------------------------------------------
1 | {% autoescape off %}
2 |
3 | A new user has recently been invited with email: {{ email }}!
4 | You can find more details here:
5 |
6 | {{ protocol }}://{{ domain }}{% url 'admin_console' %}
7 |
8 | Thank you for your continued support!
9 |
10 | Sincerely,
11 | The MIT VT/VF Annotation Team
12 |
13 | {% endautoescape %}
14 |
--------------------------------------------------------------------------------
/waveform-django/website/templates/registration/new_invite_subject.txt:
--------------------------------------------------------------------------------
1 | {% load i18n %}{% autoescape off %}
2 | {% blocktrans %}New user invited {{ site_name }}{% endblocktrans %}
3 | {% endautoescape %}
4 |
--------------------------------------------------------------------------------
/waveform-django/website/templates/registration/new_user_email.html:
--------------------------------------------------------------------------------
1 | {% autoescape off %}
2 |
3 | A new user has recently joined with email: {{ email }}!
4 | You can find more details here:
5 |
6 | {{ protocol }}://{{ domain }}{% url 'admin_console' %}
7 |
8 | Thank you for your continued support!
9 |
10 | Sincerely,
11 | The MIT VT/VF Annotation Team
12 |
13 | {% endautoescape %}
14 |
--------------------------------------------------------------------------------
/waveform-django/website/templates/registration/new_user_subject.txt:
--------------------------------------------------------------------------------
1 | {% load i18n %}{% autoescape off %}
2 | {% blocktrans %}New user joined {{ site_name }}{% endblocktrans %}
3 | {% endautoescape %}
4 |
--------------------------------------------------------------------------------
/waveform-django/website/templates/registration/password_reset_complete.html:
--------------------------------------------------------------------------------
1 | {% extends "base.html" %}
2 | {% block navbar%} {% endblock %}
3 | {% block content %}
4 |
5 |
6 | //',
27 | views.change_password, name='password_reset_confirm'),
28 | path('waveform-annotation/reset/done/',
29 | auth_views.PasswordResetCompleteView.as_view(
30 | template_name='registration/password_reset_complete.html'),
31 | name='password_reset_complete'),
32 | # Waveform annotator dashboard
33 | path('', views.redirect_home),
34 | path('waveform-annotation/waveforms/', include('waveforms.urls')),
35 | # GraphQL API interface
36 | path('waveform-annotation/', include('export.urls')),
37 | # Robots.txt for crawlers
38 | path('waveform-annotation/robots.txt',
39 | lambda x: HttpResponse('User-Agent: *\Allow: /',
40 | content_type='text/plain'), name='robots_file'),
41 | ]
42 |
--------------------------------------------------------------------------------
/waveform-django/website/views.py:
--------------------------------------------------------------------------------
1 | from django.contrib import messages
2 | from django.contrib.auth import authenticate, login, logout
3 | from django.contrib.auth.decorators import login_required
4 | from django.contrib.sites.shortcuts import get_current_site
5 | from django.shortcuts import render, redirect
6 | from django.utils import timezone
7 |
8 | from .forms import CreateUserForm, ResetPasswordForm, ChangePasswordForm
9 | from waveforms.models import InvitedEmails, User, UserSettings
10 | from website.settings import base
11 |
12 |
13 | def redirect_home(request):
14 | """
15 | Redirects users to home page
16 | """
17 | return redirect(login_page)
18 |
19 |
20 | def register_page(request):
21 | """
22 | Create a new account upon request.
23 |
24 | Parameters
25 | ----------
26 | request : Request object
27 | The current HTTP request.
28 |
29 | Returns
30 | -------
31 | N/A
32 |
33 | """
34 | if request.user.is_authenticated:
35 | return redirect('waveform_published_home')
36 | else:
37 | form = CreateUserForm()
38 | if request.method == 'POST':
39 | form = CreateUserForm(request.POST)
40 | if form.is_valid():
41 | form.save()
42 | username = form.cleaned_data.get('username')
43 | email = form.cleaned_data.get('email')
44 | try:
45 | invited_user = InvitedEmails.objects.get(email=email)
46 | invited_user.joined = True
47 | invited_user.joined_username = username
48 | invited_user.save()
49 | except InvitedEmails.DoesNotExist:
50 | pass
51 | messages.success(request,
52 | f'Account was created for {username}')
53 | # Create the default profile and settings for that user
54 | new_user = User(username=username, email=email,
55 | is_admin=False)
56 | new_user.save()
57 | UserSettings(user=new_user).save()
58 | # Send email to all admins notifying about new user
59 | admin_users = User.objects.filter(is_admin=True)
60 | current_site = get_current_site(request)
61 | domain = current_site.domain
62 | context = {
63 | 'protocol': 'http' if domain.startswith('localhost') else 'https',
64 | 'domain': domain,
65 | 'site_name': current_site.name,
66 | 'email': email
67 | }
68 | email_form = ResetPasswordForm()
69 | for admin_user in admin_users:
70 | email_form.send_mail(
71 | 'registration/new_user_subject.txt',
72 | 'registration/new_user_email.html', context,
73 | base.EMAIL_FROM, admin_user.email
74 | )
75 | return redirect('login')
76 | return render(request, 'website/register.html', {'form': form})
77 |
78 |
79 | def login_page(request):
80 | """
81 | Login the user upon request.
82 |
83 | Parameters
84 | ----------
85 | request : Request object
86 | The current HTTP request.
87 |
88 | Returns
89 | -------
90 | N/A
91 |
92 | """
93 | if request.user.is_authenticated:
94 | return redirect('waveform_published_home')
95 | else:
96 | if request.method == 'POST':
97 | username = request.POST.get('username')
98 | password =request.POST.get('password')
99 | user = authenticate(request, username=username, password=password)
100 | if user is not None:
101 | login(request, user)
102 | user = User.objects.get(username=username)
103 | user.last_login = timezone.now()
104 | user.save()
105 | if 'annotations' in request.environ['QUERY_STRING']:
106 | return redirect('render_annotations')
107 | else:
108 | return redirect('waveform_published_home')
109 | else:
110 | messages.info(request, 'Username OR password is incorrect')
111 | return render(request, 'website/login.html', {})
112 | else:
113 | if (request.GET.dict() == {}) or not (request.user.is_authenticated):
114 | return render(request, 'website/login.html', {})
115 | elif 'annotations' in request.GET.dict()['next']:
116 | return redirect('render_annotations')
117 | else:
118 | return redirect('waveform_published_home')
119 |
120 |
121 | def reset_password(request):
122 | """
123 | Reset the user's password.
124 |
125 | Parameters
126 | ----------
127 | request : Request object
128 | The current HTTP request.
129 |
130 | Returns
131 | -------
132 | N/A
133 |
134 | """
135 | form = ResetPasswordForm()
136 | if request.method == 'POST':
137 | form = ResetPasswordForm(request.POST)
138 | if form.is_valid():
139 | form.save(
140 | from_email = base.EMAIL_FROM,
141 | request = request
142 | )
143 | return redirect('password_reset_done')
144 | return render(request, 'registration/password_reset_form.html',
145 | {'form': form})
146 |
147 |
148 | def change_password(request):
149 | """
150 | Change the user's password.
151 |
152 | Parameters
153 | ----------
154 | request : Request object
155 | The current HTTP request.
156 |
157 | Returns
158 | -------
159 | N/A
160 |
161 | """
162 | form = ChangePasswordForm()
163 | if request.method == 'POST':
164 | form = ChangePasswordForm(request.POST)
165 | if form.is_valid():
166 | form.save()
167 | messages.info(request, 'Changed password successfully!')
168 | return redirect('login')
169 | return render(request, 'registration/password_reset_confirm.html',
170 | {'form': form})
171 |
172 |
173 | @login_required
174 | def logout_user(request):
175 | """
176 | Logout the user upon request.
177 |
178 | Parameters
179 | ----------
180 | request : Request object
181 | The current HTTP request.
182 |
183 | Returns
184 | -------
185 | N/A
186 |
187 | """
188 | logout(request)
189 | messages.info(request, 'Logged out successfully!')
190 | return redirect('login')
191 |
--------------------------------------------------------------------------------
/waveform-django/website/wsgi.py:
--------------------------------------------------------------------------------
1 | """
2 | WSGI config for website project.
3 |
4 | It exposes the WSGI callable as a module-level variable named ``application``.
5 |
6 | For more information on this file, see
7 | https://docs.djangoproject.com/en/2.2/howto/deployment/wsgi/
8 | """
9 |
10 | import os
11 |
12 | from django.core.wsgi import get_wsgi_application
13 |
14 | os.environ.setdefault("DJANGO_SETTINGS_MODULE", "website.settings.base")
15 |
16 | application = get_wsgi_application()
17 |
--------------------------------------------------------------------------------
14 | {% else %}
15 |
60 |
16 | {% endif %}
17 |
20 | {{ message|safe }}
21 |
22 | {% endfor %}
23 | {% endif %}
24 |
59 | 61 | {% endblock %} 62 | -------------------------------------------------------------------------------- /waveform-django/waveforms/templates/waveforms/tutorial.html: -------------------------------------------------------------------------------- 1 | {% extends "base.html" %} 2 | {% load static %} 3 | 4 | {% block content %} 5 |
6 |
40 |
86 | {% endblock %}
87 |
--------------------------------------------------------------------------------
/waveform-django/waveforms/urls.py:
--------------------------------------------------------------------------------
1 | from django.urls import include, path
2 | # Needed to render the graph
3 | from waveforms.dash_apps.finished_apps import waveform_vis
4 | from waveforms.dash_apps.finished_apps import waveform_vis_adjudicate
5 |
6 | from waveforms import views
7 |
8 |
9 | urlpatterns = [
10 | path('django_plotly_dash/', include('django_plotly_dash.urls')),
11 | path('', views.waveform_published_home, name='waveform_published_home'),
12 | path('Basic Usage Instructions
7 |
8 |
39 | -
9 |
- After logging in, you should see your username with the option to logout in the top left corner. 10 |
- Below that, you should see links to view your current annotations, view a brief tutorial explaining the layout of the annotator (this page), and a way to change the settings / preferences of your annotator (including grid color, time before and after an event, the level of downsampling, etc.). 11 |
- To begin annotating, go to the annotator home and scroll down to view the entire annotator. 12 |
- On the top left side, you should see the name of the current annotation record, event, and label (It has been filtered so only VTach and VFib/VFlutter events are displayed. Please let us know if you see otherwise!). 13 |
- Directly below this is where you can enter your decision for the label (True, False, Uncertain, Reject, or Save for Later) as well as your additional comments explaining your decision (this field is not necessary but may prove useful later on for either self-reference or research purposes). 14 |
- You can submit the annotation with the "Submit" button, or go to the next or previous annotation without saving using the arrows. Submitting the annotation will automatically send you to the next event. 15 |
- If you hover over the signals, you will be able to see its value and how it aligns with the other signals. 16 |
- Also, you can click and drag the signal in any direction to view more of it. 17 |
- At any point, you can view all of your previous annotations with the "View current annotations" link and either edit or delete them if needed. You will also be able to see your progress on the annotations using the fractions on the far right side. Also note that if you reload the annotator home page at any point, you will be forwarded to your first non-annotated event. 18 |
- You can also adjust the settings for the annotator using the "Change annotator settings" link; for example, you can reduce the downsampling to view more detail on the EKG signals if needed. 19 |
21 |
38 |
22 |
37 |
23 |
29 | Getting Events To Annotate
24 | 28 |
30 |
36 | Taking The Practice Test
31 | 35 |40 |
Interface Overview
41 |
42 |
65 |
66 |
85 |
43 |
61 | -
44 |
- Current record 45 |
- Current event 46 |
- Triggered alarm annotation 47 |
- Annotation decision 48 |
- Annotator comments 49 |
- Submit new annotation for this record and event 50 |
- Go to the previous annotation without saving annotation decision and comments 51 |
- Go to the next annotation without saving annotation decision and comments 52 |
- Download the current screen (only plotted signals, not sidebar) as a PNG image 53 |
- Pan across signal to view different ranges (click and hold anywhere, drag to the right to move the signal to the right / move backwards in time, drag upwards or downwards to view upper and lower portions of the signal) 54 |
- Zoom in (roughly by a factor of two each time) 55 |
- Zoom out (roughly by a factor of two each time) 56 |
- View the entire signal 57 |
- Go to the Plotly website which is the foundation of this plot 58 |
- The vertical blue line represents the timestamp of the alarm annotation 59 |
62 | 
63 |
64 | 65 |
66 |
67 |
84 |
68 |
83 |
69 |
75 | Adjusting And Scaling The Waveform Viewer
70 | 74 |
76 |
82 | Using The Caliper Tool
77 | 81 |
7 |
19 |
20 |
21 | {% endblock %}
22 |
--------------------------------------------------------------------------------
/waveform-django/website/templates/registration/password_reset_confirm.html:
--------------------------------------------------------------------------------
1 | {% extends "base.html" %}
2 | {% block navbar%} {% endblock %}
3 | {% block content %}
4 |
5 |
6 |
8 |
18 |
9 |
10 |
17 | 10 |
11 |
13 | Reset Password Final
12 |14 | Your password has been reset. You may go ahead and sign in now. 15 |
16 |
7 |
38 |
39 |
40 | {% endblock %}
41 |
--------------------------------------------------------------------------------
/waveform-django/website/templates/registration/password_reset_done.html:
--------------------------------------------------------------------------------
1 | {% extends "base.html" %}
2 | {% block navbar%} {% endblock %}
3 | {% block content %}
4 |
5 |
6 |
8 |
37 |
9 |
10 |
36 | 10 |
11 |
13 |
26 | {% comment %}
27 | Change Password
12 |28 | The password reset link was invalid, possibly because it has already been used. 29 | Please request a new password reset. 30 |
31 | {% endcomment %} 32 |33 | Return to login page 34 |
35 |
7 |
27 |
28 |
29 | {% endblock %}
30 |
--------------------------------------------------------------------------------
/waveform-django/website/templates/registration/password_reset_email.html:
--------------------------------------------------------------------------------
1 | {% autoescape off %}
2 |
3 | To initiate the password reset process for your Account {{ user.username }},
4 | click the link below:
5 |
6 | {{ protocol }}://{{ domain }}{% url 'password_reset_confirm' uidb64=uid token=token %}
7 |
8 | If clicking the link above doesn't work, please copy and paste the URL in a new browser
9 | window instead.
10 |
11 | You will have one hour to reset your password, else please try again.
12 |
13 | Sincerely,
14 | The MIT VT/VF Annotation Team
15 |
16 | {% endautoescape %}
17 |
--------------------------------------------------------------------------------
/waveform-django/website/templates/registration/password_reset_form.html:
--------------------------------------------------------------------------------
1 | {% extends "base.html" %}
2 | {% block navbar%} {% endblock %}
3 | {% block content %}
4 |
5 |
6 |
8 |
26 |
9 |
10 |
25 | 10 |
11 |
13 | Reset Password Confirm
12 |14 | We've emailed you instructions for resetting your password, if an account exists with the username you entered. 15 | You should receive them shortly. 16 |
17 |18 | If you don't receive an email, please make sure you've entered the username you registered with, 19 | and check your email's spam folder. 20 |
21 |22 | Return to login page 23 |
24 |
7 |
31 |
32 |
33 | {% endblock %}
34 |
--------------------------------------------------------------------------------
/waveform-django/website/templates/website/login.html:
--------------------------------------------------------------------------------
1 | {% extends "base.html" %}
2 | {% block navbar%} {% endblock %}
3 | {% block content %}
4 |
5 |
8 |
30 |
9 |
10 |
25 |
29 | 10 |
11 |
13 |
23 | {{ form.errors }}
24 | Reset Password
12 |25 |
26 | Remember your password? Return to login page 27 |
28 |
6 |
51 |
52 |
53 | {% endblock %}
54 |
--------------------------------------------------------------------------------
/waveform-django/website/templates/website/register.html:
--------------------------------------------------------------------------------
1 | {% extends "base.html" %}
2 | {% block navbar%} {% endblock %}
3 | {% block content %}
4 |
5 |
6 |
7 |
50 |
8 |
9 |
40 |
49 | 9 |
10 |
12 | Login
11 |
13 |
25 |
26 | {% for message in messages %}
27 | 28 | {{ message }} 29 |
30 | {% endfor %} 31 |
32 |
39 |
33 | Don't have an account? Sign Up
34 |
35 |
36 | Forgot your password? Reset Password
37 |
38 | 40 |
41 |
48 | Instructions
42 |-
43 |
- To start, click on the "Sign Up" link below the "Login" button to create an account. 44 |
- Enter your desired username and password. You will be asked to enter your password twice to confirm. 45 |
- After creating an account, you can now sign in here. 46 |
7 |
41 |
42 |
43 | {% endblock %}
44 |
--------------------------------------------------------------------------------
/waveform-django/website/tokens.py:
--------------------------------------------------------------------------------
1 | import datetime
2 |
3 | from django.contrib.auth.tokens import PasswordResetTokenGenerator
4 | from django.utils import six
5 |
6 |
7 | class UserTokenGenerator(PasswordResetTokenGenerator):
8 | """
9 | Generate a token for a user's new password.
10 | """
11 | def _make_hash_value(self, user, timestamp):
12 | # Reset the link every hour
13 | # TODO: Add a last_login field and incorporate this to the token in
14 | # order to more robustly inactivate the link.
15 | t_now = datetime.datetime.now()
16 | t_epoch = datetime.datetime(1970, 1, 1)
17 | timestamp = int((t_now - t_epoch).total_seconds()/60/60)
18 | return (
19 | six.text_type(user.pk) + user.username +
20 | six.text_type(timestamp)
21 | )
22 |
23 | password_reset_token = UserTokenGenerator()
24 |
--------------------------------------------------------------------------------
/waveform-django/website/urls.py:
--------------------------------------------------------------------------------
1 | from django.conf.urls import include
2 | from django.contrib.auth import views as auth_views
3 | from django.http import HttpResponse
4 | from django.urls import path
5 |
6 | import debug_toolbar
7 | from website import views
8 |
9 |
10 | urlpatterns = [
11 | # Debug toolbar
12 | path('__debug__/', include(debug_toolbar.urls)),
13 | # Account creation and handling pages
14 | path('waveform-annotation/register/',
15 | views.register_page, name='register'),
16 | path('waveform-annotation/login/',
17 | views.login_page, name='login'),
18 | path('waveform-annotation/logout/',
19 | views.logout_user, name='logout'),
20 | path('waveform-annotation/password_reset/',
21 | views.reset_password, name='password_reset'),
22 | path('waveform-annotation/password_reset/done/',
23 | auth_views.PasswordResetCompleteView.as_view(
24 | template_name='registration/password_reset_done.html'),
25 | name='password_reset_done'),
26 | path('waveform-annotation/reset/
8 |
40 |
9 |
10 |
33 |
39 | 10 |
11 |
13 |
31 | {{form.errors}}
32 | Register Account
12 |33 |
34 |
38 |
35 | Already have an account? Login
36 |
37 |