├── .gitignore ├── LICENSE.txt ├── README.md ├── atm_gray_ll ├── README.md ├── build │ ├── .gitignore │ └── genmake_local ├── code │ ├── CPP_OPTIONS.h │ ├── DIAGNOSTICS_SIZE.h │ ├── SIZE.h │ ├── SIZE.h_mpi │ └── packages.conf ├── input │ ├── SST_cos0.bin │ ├── data │ ├── data.atm_gray │ ├── data.atm_phys │ ├── data.diagnostics │ ├── data.pkg │ ├── data.shap │ ├── data.zonfilt │ ├── eedata │ ├── eedata.mth │ ├── gendata.m │ └── ini_theta.bin ├── results │ └── output.txt └── run │ └── .gitignore ├── atm_strato ├── build │ ├── .gitignore │ └── genmake_local ├── code │ ├── CPP_OPTIONS.h │ ├── DIAGNOSTICS_SIZE.h │ ├── SIZE.h │ ├── SIZE.h_mpi │ └── packages.conf ├── input │ ├── ape_ozone_cs32_40l.bin │ ├── atm_cst.m │ ├── calc_hs_forcing.m │ ├── data │ ├── data.atm_gray │ ├── data.atm_phys │ ├── data.diagnostics │ ├── data.pkg │ ├── data.shap │ ├── eedata │ ├── eedata.mth │ ├── gen_o3file.m │ ├── gendata.m │ ├── pickup.0000129600.data │ ├── pickup.0000129600.meta │ ├── prepare_run │ ├── psAnom_ini_cs32.bin │ └── theta_hs94_cs32_40l.bin ├── results │ └── output.txt └── run │ └── .gitignore ├── cpl_aqua_cs24 ├── README.md ├── build_atm │ ├── .gitignore │ └── genmake_local ├── build_cpl │ ├── .gitignore │ └── genmake_local ├── build_ocn │ ├── .gitignore │ └── genmake_local ├── code_atm │ ├── AIM_OPTIONS.h │ ├── CPP_EEOPTIONS.h │ ├── CPP_OPTIONS.h │ ├── DIAGNOSTICS_SIZE.h │ ├── DIAG_OPTIONS.h │ ├── SIZE.h │ └── packages.conf ├── code_cpl │ ├── ATMSIZE.h │ ├── OCNSIZE.h │ └── packages.conf ├── code_ocn │ ├── CPP_EEOPTIONS.h │ ├── CPP_OPTIONS.h │ ├── DIAGNOSTICS_SIZE.h │ ├── DIAG_OPTIONS.h │ ├── DIC_OPTIONS.h │ ├── GAD_OPTIONS.h │ ├── PTRACERS_SIZE.h │ ├── SIZE.h │ └── packages.conf ├── grid_cs24 │ ├── grid_cs24.face001.bin │ ├── grid_cs24.face002.bin │ ├── grid_cs24.face003.bin │ ├── grid_cs24.face004.bin │ ├── grid_cs24.face005.bin │ └── grid_cs24.face006.bin ├── input_atm │ ├── DDrake.c24.L.Albedo_25pc.bin │ ├── DDrake.c24.L.LandFrc.bin │ ├── DDrake.c24.L.VegFrc_75pc.bin │ ├── data │ ├── data.aimphys │ ├── data.cpl │ ├── data.diagnostics │ ├── data.ice │ ├── data.land │ ├── data.pkg │ ├── data.shap │ ├── eedata │ ├── pickup.0556243200.data │ ├── pickup.0556243200.meta │ ├── pickup_aimCo2.0556243200 │ ├── pickup_cpl.0556243200.data │ ├── pickup_cpl.0556243200.meta │ ├── pickup_ic.0556243200.data │ ├── pickup_ic.0556243200.meta │ ├── pickup_land.0556243200.data │ ├── pickup_land.0556243200.meta │ └── prepare_run ├── input_cpl │ ├── DDrake.c24.runOff_135.bin │ ├── RA.bin │ └── data.cpl ├── input_ocn │ ├── DDr3p0_Cpl277S_C24_z15.bin │ ├── DDr3p0_Cpl277T_C24_z15.bin │ ├── DDrake.c24.Bathy.3p0km.bin │ ├── data │ ├── data.cpl │ ├── data.diagnostics │ ├── data.dic │ ├── data.gchem │ ├── data.gmredi │ ├── data.pkg │ ├── data.ptracers │ ├── eedata │ ├── pickup.0185414400.data │ ├── pickup.0185414400.meta │ ├── pickup_cpl.0185414400.data │ ├── pickup_cpl.0185414400.meta │ ├── pickup_dic.0185414400.data │ ├── pickup_dic.0185414400.meta │ ├── pickup_ptracers.0185414400.data │ ├── pickup_ptracers.0185414400.meta │ └── prepare_run ├── results │ ├── atmSTDOUT.0000 │ └── ocnSTDOUT.0000 └── shared_code │ ├── ATMIDS.h │ └── OCNIDS.h ├── cpl_gray+ocn ├── build_atm │ ├── .gitignore │ └── genmake_local ├── build_cpl │ ├── .gitignore │ └── genmake_local ├── build_ocn │ ├── .gitignore │ └── genmake_local ├── code_atm │ ├── CPP_EEOPTIONS.h │ ├── CPP_OPTIONS.h │ ├── DIAGNOSTICS_SIZE.h │ ├── SIZE.h │ └── packages.conf ├── code_cpl │ ├── ATMSIZE.h │ ├── OCNSIZE.h │ └── packages.conf ├── code_ocn │ ├── CPP_EEOPTIONS.h │ ├── CPP_OPTIONS.h │ ├── DIAGNOSTICS_SIZE.h │ ├── SIZE.h │ └── packages.conf ├── input_atm │ ├── data │ ├── data.atm_gray │ ├── data.atm_phys │ ├── data.cpl │ ├── data.diagnostics │ ├── data.pkg │ ├── data.shap │ ├── eedata │ ├── eedata.mth │ └── prepare_run ├── input_cpl │ └── data.cpl ├── input_ocn │ ├── data │ ├── data.cpl │ ├── data.diagnostics │ ├── data.gmredi │ ├── data.pkg │ ├── eedata │ ├── eedata.mth │ ├── flat_4km.bin │ ├── gendata.m │ ├── prepare_run │ ├── sIni_cpl.bin │ ├── tIni_cpl.bin │ ├── wall_S_DbD.bin │ └── wall_W_DbD.bin ├── results │ ├── atmSTDOUT.0000 │ └── ocnSTDOUT.0000 └── shared_code │ ├── ATMIDS.h │ └── OCNIDS.h ├── cpl_gray+swamp+ocn ├── README.md ├── build_atm │ ├── .gitignore │ └── genmake_local ├── build_cpl │ ├── .gitignore │ └── genmake_local ├── build_ocn │ ├── .gitignore │ └── genmake_local ├── code_atm │ ├── CPP_EEOPTIONS.h │ ├── CPP_OPTIONS.h │ ├── DIAGNOSTICS_SIZE.h │ ├── SIZE.h │ ├── SIZE.h.24p │ └── packages.conf ├── code_cpl │ ├── ATMSIZE.h │ ├── OCNSIZE.h │ └── packages.conf ├── code_ocn │ ├── CPL_PARAMS.h │ ├── CPP_EEOPTIONS.h │ ├── CPP_OPTIONS.h │ ├── DIAGNOSTICS_SIZE.h │ ├── GGL90_OPTIONS.h │ ├── SIZE.h │ ├── SIZE.h.3p │ ├── cpl_readparms.F │ ├── ocn_apply_import.F │ └── packages.conf ├── input_atm │ ├── Albedo.bin │ ├── MixedLayerDepth.bin │ ├── albgrad_2to8.bin │ ├── data │ ├── data.aimphys │ ├── data.atm_gray │ ├── data.atm_phys │ ├── data.cpl │ ├── data.diagnostics │ ├── data.mnc │ ├── data.pkg │ ├── data.shap │ ├── eedata │ ├── eedata.mth │ └── prepare_run ├── input_cpl │ └── data.cpl ├── input_ocn │ ├── Bathymetry.bin │ ├── FreshwaterBalanceWeights.bin │ ├── data │ ├── data.cpl │ ├── data.diagnostics │ ├── data.ggl90 │ ├── data.gmredi │ ├── data.mnc │ ├── data.pkg │ ├── eedata │ ├── eedata.mth │ ├── gendata.m │ ├── prepare_run │ ├── sIni_cpl.bin │ ├── tIni_cpl.bin │ ├── wall_S.bin │ └── wall_W.bin ├── results │ ├── atmSTDOUT.0000 │ └── ocnSTDOUT.0000 ├── run_dir │ └── run_cpl.slurm └── shared_code │ ├── ATMIDS.h │ └── OCNIDS.h ├── global_oce_cs32 ├── README.md ├── build │ └── .gitignore ├── code │ ├── AUTODIFF_OPTIONS.h │ ├── CPP_OPTIONS.h │ ├── CTRL_OPTIONS.h │ ├── CTRL_SIZE.h │ ├── DIAGNOSTICS_SIZE.h │ ├── DIAG_OPTIONS.h │ ├── ECCO_OPTIONS.h │ ├── EXF_OPTIONS.h │ ├── GGL90_OPTIONS.h │ ├── GMREDI_OPTIONS.h │ ├── LAYERS_SIZE.h │ ├── MDSIO_OPTIONS.h │ ├── MOM_COMMON_OPTIONS.h │ ├── PROFILES_SIZE.h │ ├── SEAICE_OPTIONS.h │ ├── SIZE.h │ ├── SIZE.h_mpi │ ├── packages.conf │ └── tamc.h ├── code_ad ├── input │ ├── data │ ├── data.autodiff │ ├── data.cal │ ├── data.cost │ ├── data.ctrl │ ├── data.diagnostics │ ├── data.down_slope │ ├── data.ecco │ ├── data.err │ ├── data.exch2 │ ├── data.exf │ ├── data.ggl90 │ ├── data.gmredi │ ├── data.layers │ ├── data.mnc │ ├── data.optim │ ├── data.pkg │ ├── data.profiles │ ├── data.ptracers │ ├── data.rbcs │ ├── data.salt_plume │ ├── data.sbo │ ├── data.seaice │ ├── data.smooth │ ├── eedata │ └── prepare_run ├── input_OI │ ├── README │ ├── data │ ├── data.ctrl │ ├── data.ecco │ ├── data.optim │ ├── data.pkg │ ├── data.profiles │ ├── prepare_run │ ├── xx_kapgm_effective.data │ ├── xx_kapgm_effective.err │ └── xx_kapgm_effective.meta ├── input_ad.sens │ ├── data.ctrl │ ├── data.ecco │ ├── data.profiles │ ├── north10_maskS │ ├── north10_maskW │ ├── some_mask.m │ ├── south30_maskC │ ├── south30_maskK │ └── south30_maskT ├── input_ad │ ├── data │ ├── data.autodiff │ ├── data.ctrl │ ├── data.gmredi │ ├── data.grdchk │ ├── data.pkg │ ├── data.seaice │ └── prepare_run ├── input_fields │ ├── bathy_global.bin │ ├── bathy_north.bin │ ├── bathy_south.bin │ ├── grid_cs32.face001.bin │ ├── grid_cs32.face002.bin │ ├── grid_cs32.face003.bin │ ├── grid_cs32.face004.bin │ ├── grid_cs32.face005.bin │ ├── grid_cs32.face006.bin │ ├── siAREA.ini │ ├── siHEFF.ini │ ├── siHSNOW.ini │ ├── siTICE.ini │ ├── siUICE.ini │ ├── siVICE.ini │ ├── smooth2Dnorm001.data │ ├── smooth2Dnorm001.meta │ ├── smooth2Dscales001 │ ├── smooth3Dnorm001.data │ ├── smooth3Dnorm001.meta │ ├── smooth3DscalesH001 │ ├── smooth3DscalesZ001 │ ├── some_SSS_atlas.bin │ ├── some_S_atlas.bin │ ├── some_S_sigma.bin │ ├── some_TS_atlas.sortedInTime.nc │ ├── some_T_atlas.bin │ ├── some_T_sigma.bin │ ├── some_eta_sigma.bin │ ├── some_eta_step.bin │ ├── some_obs_weights.m │ ├── some_scale.bin │ ├── some_sst_sigma.bin │ ├── some_sst_step.bin │ ├── wt_aqh.data │ ├── wt_atemp.data │ ├── wt_diffkr.data │ ├── wt_kapgm.data │ ├── wt_kapredi.data │ ├── wt_lwdown.data │ ├── wt_ones.bin │ ├── wt_precip.data │ ├── wt_salt.data │ ├── wt_swdown.data │ ├── wt_tauu.data │ ├── wt_tauv.data │ ├── wt_theta.data │ ├── wt_uwind.data │ └── wt_vwind.data ├── results │ ├── output.txt │ ├── output_adm.sens.txt │ └── output_adm.txt └── run │ └── .gitignore ├── global_oce_llc90 ├── README.md ├── build │ └── .gitignore ├── code │ ├── AUTODIFF_OPTIONS.h │ ├── CPP_OPTIONS.h │ ├── CTRL_OPTIONS.h │ ├── CTRL_SIZE.h │ ├── DIAGNOSTICS_SIZE.h │ ├── DIAG_OPTIONS.h │ ├── ECCO_OPTIONS.h │ ├── EXF_OPTIONS.h │ ├── GGL90_OPTIONS.h │ ├── GMREDI_OPTIONS.h │ ├── LAYERS_SIZE.h │ ├── MDSIO_OPTIONS.h │ ├── MOM_COMMON_OPTIONS.h │ ├── PROFILES_SIZE.h │ ├── SEAICE_OPTIONS.h │ ├── SIZE.h │ ├── SIZE.h_mpi │ ├── mom_calc_visc.F │ ├── mom_calc_visc.F.ref │ ├── packages.conf │ └── tamc.h ├── code_ad ├── input.core2 │ ├── data.exf │ └── prepare_run ├── input.ecco_v4 │ ├── data │ ├── data.cal │ ├── data.ecco │ ├── data.exf │ ├── data.gmredi │ ├── data.seaice │ └── prepare_run ├── input.ecmwf │ ├── data.cal │ ├── data.exf │ ├── data.seaice │ └── prepare_run ├── input │ ├── data │ ├── data.cal │ ├── data.cost │ ├── data.ctrl │ ├── data.diagnostics │ ├── data.ecco │ ├── data.err │ ├── data.exch2 │ ├── data.exf │ ├── data.ggl90 │ ├── data.gmredi │ ├── data.mnc │ ├── data.optim │ ├── data.pkg │ ├── data.profiles │ ├── data.salt_plume │ ├── data.seaice │ ├── eedata │ ├── prepare_run │ └── unused │ │ ├── data.diagnostics_layers │ │ ├── data.down_slope │ │ ├── data.kpp │ │ ├── data.layers │ │ ├── data.ptracers │ │ ├── data.rbcs │ │ ├── data.rbcs_spin │ │ └── data.sbo ├── input_ad.core2 │ ├── data │ ├── data.ctrl │ ├── data.exf │ ├── data.grdchk │ └── prepare_run ├── input_ad.ecco_v4 │ ├── data.ctrl │ ├── data.grdchk │ ├── data.pkg │ ├── data.salt_plume │ └── prepare_run ├── input_ad.ecmwf │ ├── data.cal │ ├── data.ctrl │ ├── data.exf │ ├── data.gmredi │ ├── data.grdchk │ ├── data.pkg │ └── prepare_run ├── input_ad │ ├── data │ ├── data.autodiff │ ├── data.ctrl │ ├── data.grdchk │ ├── data.pkg │ ├── data.smooth │ └── prepare_run ├── input_verifs │ └── .gitignore ├── results │ ├── output.core2.txt │ ├── output.ecco_v4.txt │ ├── output.ecmwf.txt │ ├── output.txt │ ├── output_adm.core2.txt │ ├── output_adm.ecco_v4.txt │ ├── output_adm.ecmwf.txt │ └── output_adm.txt └── run │ └── .gitignore ├── global_ocean.gm_k3d ├── build │ ├── .gitignore │ └── genmake_local ├── code │ ├── CPP_OPTIONS.h │ ├── DIAGNOSTICS_SIZE.h │ ├── GMREDI_OPTIONS.h │ ├── SIZE.h │ ├── SIZE.h_mpi │ └── packages.conf ├── input.geom │ ├── data │ ├── data.diagnostics │ ├── data.exch2.mpi │ ├── data.gmredi │ ├── pickup_gmredi.0000036000 │ ├── pickup_gmredi.0000036000.meta │ └── prepare_run ├── input │ ├── data │ ├── data.diagnostics │ ├── data.exch2.mpi │ ├── data.gmredi │ ├── data.pkg │ ├── eedata │ ├── eedata.mth │ └── prepare_run ├── results │ ├── output.geom.txt │ └── output.txt └── run │ └── .gitignore ├── global_ocean.gm_res ├── build │ ├── .gitignore │ └── genmake_local ├── code │ ├── CPP_OPTIONS.h │ ├── DIAGNOSTICS_SIZE.h │ ├── GMREDI_OPTIONS.h │ ├── SIZE.h │ ├── SIZE.h_mpi │ └── packages.conf ├── input │ ├── data │ ├── data.diagnostics │ ├── data.exch2.mpi │ ├── data.gmredi │ ├── data.pkg │ ├── eedata │ ├── eedata.mth │ └── prepare_run ├── results │ └── output.txt └── run │ └── .gitignore ├── offline_cheapaml ├── README ├── build │ └── .gitignore ├── code │ ├── CPP_OPTIONS.h │ ├── DIAGNOSTICS_SIZE.h │ ├── SEAICE_OPTIONS.h │ ├── SEAICE_SIZE.h │ ├── SIZE.h │ ├── SIZE.h_mpi │ └── packages.conf ├── input.dyn │ ├── data │ ├── data.cheapaml │ ├── data.diagnostics │ ├── data.ice │ ├── data.pkg │ ├── data.seaice │ ├── eedata │ └── eedata.mth ├── input │ ├── channel.bin │ ├── const+20.bin │ ├── const_00.bin │ ├── data │ ├── data.cheapaml │ ├── data.diagnostics │ ├── data.ice │ ├── data.pkg │ ├── dlw_270y.bin │ ├── dsw_70y.bin │ ├── eedata │ ├── eedata.mth │ ├── gendata.m │ ├── ice0_area.bin │ ├── qa70_-10.bin │ ├── tair_-10.bin │ ├── tocn_1x.bin │ ├── tr_checklist │ ├── windx_10ms.bin │ └── windy_conv.bin ├── results │ ├── output.dyn.txt │ └── output.txt └── run │ └── .gitignore ├── shelfice_remeshing ├── README ├── build │ └── .gitignore ├── code │ ├── CPP_OPTIONS.h │ ├── DIAGNOSTICS_SIZE.h │ ├── OBCS_OPTIONS.h │ ├── SHELFICE.h │ ├── SHELFICE_LOCAL.h │ ├── SHELFICE_OPTIONS.h │ ├── SIZE.h │ ├── STREAMICE_OPTIONS.h │ ├── ini_masks_etc.F │ ├── ini_masks_remesh.F │ ├── obcs_balance_flow.F │ ├── packages.conf │ ├── shelfice_dig_shelf.F │ ├── shelfice_init_fixed_remesh.F │ ├── shelfice_massmin.F │ ├── shelfice_readparms.F │ ├── shelfice_remeshing.F │ ├── shelfice_restore_sealevel.F │ ├── shelfice_sea_level_avg.F │ ├── shelfice_step_icemass.F │ ├── shelfice_thermodynamics.F │ ├── shelfice_update_masks_remesh.F │ └── shelfice_vert_dens.F ├── code_vrm │ ├── CPP_OPTIONS.h │ ├── DIAGNOSTICS_SIZE.h │ ├── SHELFICE_OPTIONS.h │ ├── SIZE.h │ ├── STREAMICE_OPTIONS.h │ └── packages.conf ├── input │ ├── HBCy.box │ ├── bathy.box │ ├── data │ ├── data.diagnostics │ ├── data.obcs │ ├── data.pkg │ ├── data.shelfice │ ├── data.streamice │ ├── eedata │ ├── etainit.round.bin │ ├── gendata.m │ ├── h0.bin │ ├── hmask3.box │ ├── pickup.0000008640.data │ ├── pickup.0000008640.meta │ ├── pickup_shelfice.0000008640.data │ ├── pickup_shelfice.0000008640.meta │ ├── pickup_streamice.0000008640.data │ ├── pickup_streamice.0000008640.meta │ ├── pload.pig.jmd95z │ ├── rdmds_init.m │ ├── salt.init │ ├── salt.obw │ ├── shelficemassinit.bin │ ├── shelftopo.round.bin │ ├── theta.init │ ├── theta.obw │ ├── ufacemask3.box │ ├── vdirich.box │ ├── vfacemask3.box │ ├── vmassflux3.box │ └── vvel.obw ├── input_vrm │ ├── data │ ├── data.diagnostics │ ├── data.obcs │ ├── data.pkg │ ├── data.shelfice │ ├── data.streamice │ ├── eedata │ ├── pickup.0000011395.data │ ├── pickup.0000011395.meta │ ├── pickup_shelfice.0000011395.data │ ├── pickup_shelfice.0000011395.meta │ ├── pickup_streamice.0000011395.data │ ├── pickup_streamice.0000011395.meta │ └── prepare_run ├── results │ ├── output.txt │ └── output_vrm.txt └── run │ └── .gitignore ├── small_toy ├── README.md ├── build │ └── .gitignore ├── code │ ├── CTRL_OPTIONS.h │ ├── DIAGNOSTICS_SIZE.h │ ├── EXF_OPTIONS.h │ ├── SIZE.h │ └── packages.conf ├── input.baseTime │ ├── data │ └── data.cal ├── input.ctrl │ ├── data │ ├── data.ctrl │ ├── data.exf │ ├── data.optim │ ├── data.pkg │ └── xx_sst.0000000001 ├── input.no_exf │ ├── data │ └── data.pkg ├── input │ ├── bathy_1km.bin │ ├── data │ ├── data.cal │ ├── data.diagnostics │ ├── data.exf │ ├── data.pkg │ ├── eedata │ ├── gendata.m │ ├── ones_64b.bin │ ├── target_SST.100.bin │ ├── tr_checklist │ └── zero_64b.bin ├── results │ ├── output.baseTime.txt │ ├── output.ctrl.txt │ ├── output.no_exf.txt │ └── output.txt └── run │ └── .gitignore └── update_history /.gitignore: -------------------------------------------------------------------------------- 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