├── .gitignore ├── .gitmodules ├── 90-day-post-discharge-mortality ├── FIDDLE_icd │ ├── config.py │ ├── config.yaml │ ├── helpers.py │ ├── run.py │ └── steps.py ├── cohort.ipynb ├── helper.py ├── log │ ├── model_clinical.txt │ ├── model_clinical_icd[0,1,2].txt │ ├── model_clinical_icd[0,1].txt │ └── model_clinical_icd[0].txt ├── main.ipynb ├── model.ipynb ├── model_clinical.py ├── model_clinical_icd[0,1,2].py ├── model_clinical_icd[0,1].py └── model_clinical_icd[0].py ├── README.md ├── eicu_experiments ├── 1_data_extraction │ ├── PopulationSummary.ipynb │ ├── extract_medication.py │ ├── extract_nurseCharting.py │ ├── extract_other_tables.ipynb │ ├── extract_pivoted.py │ ├── extract_resp_IO.ipynb │ ├── generate_labels.ipynb │ ├── population_ARF.ipynb │ ├── population_Shock.ipynb │ └── population_mortality.ipynb ├── 2_apply_FIDDLE │ ├── prepare_data.py │ ├── prepare_data.sh │ ├── prepare_data_mortality.py │ └── run_make_all.sh └── 3_ML_models │ ├── DataSummary.ipynb │ ├── Test.ipynb │ ├── config.yaml │ ├── lib │ ├── data.py │ ├── evaluate.py │ ├── experiment.py │ ├── models.py │ └── trainer.py │ ├── run_deep.py │ ├── run_deep_all.sh │ ├── run_deep_eval.py │ ├── run_shallow.py │ └── run_shallow_all.sh ├── environment.yml ├── mimic3_ablations ├── 2_apply_FIDDLE │ ├── FIDDLE_mask+Dt │ │ ├── config.py │ │ ├── config.yaml │ │ ├── helpers.py │ │ ├── run.py │ │ └── steps.py │ ├── FIDDLE_maskonly │ │ ├── config.py │ │ ├── config.yaml │ │ ├── helpers.py │ │ ├── run.py │ │ └── steps.py │ ├── FIDDLE_medianimpute │ │ ├── config.py │ │ ├── config.yaml │ │ ├── helpers.py │ │ ├── run.py │ │ └── steps.py │ ├── FIDDLE_noimpute │ │ ├── config.py │ │ ├── config.yaml │ │ ├── helpers.py │ │ ├── run.py │ │ └── steps.py │ ├── FIDDLE_ordinal │ │ ├── config.py │ │ ├── config.yaml │ │ ├── helpers.py │ │ ├── run.py │ │ └── steps.py │ ├── log │ │ ├── impute,benchmark,outcome=mortality,T=48.0,dt=1.0.err │ │ ├── impute,benchmark,outcome=mortality,T=48.0,dt=1.0.out │ │ ├── impute,benchmark,outcome=mortality,T=48.0,dt=12.0.err │ │ ├── impute,benchmark,outcome=mortality,T=48.0,dt=12.0.out │ │ ├── impute,benchmark,outcome=mortality,T=48.0,dt=4.0.err │ │ ├── impute,benchmark,outcome=mortality,T=48.0,dt=4.0.out │ │ ├── mask+Dt,benchmark,outcome=mortality,T=48.0,dt=1.0.err │ │ ├── mask+Dt,benchmark,outcome=mortality,T=48.0,dt=1.0.out │ │ ├── maskonly,benchmark,outcome=mortality,T=48.0,dt=1.0.err │ │ ├── maskonly,benchmark,outcome=mortality,T=48.0,dt=1.0.out │ │ ├── medianimpute,benchmark,outcome=mortality,T=48.0,dt=1.0.err │ │ ├── medianimpute,benchmark,outcome=mortality,T=48.0,dt=1.0.out │ │ ├── medianimpute,benchmark,outcome=mortality,T=48.0,dt=12.0.err │ │ ├── medianimpute,benchmark,outcome=mortality,T=48.0,dt=12.0.out │ │ ├── medianimpute,benchmark,outcome=mortality,T=48.0,dt=4.0.err │ │ ├── medianimpute,benchmark,outcome=mortality,T=48.0,dt=4.0.out │ │ ├── nofreq,benchmark,outcome=mortality,T=48.0,dt=1.0.err │ │ ├── nofreq,benchmark,outcome=mortality,T=48.0,dt=1.0.out │ │ ├── nofreq,benchmark,outcome=mortality,T=48.0,dt=12.0.err │ │ ├── nofreq,benchmark,outcome=mortality,T=48.0,dt=12.0.out │ │ ├── nofreq,benchmark,outcome=mortality,T=48.0,dt=4.0.err │ │ ├── nofreq,benchmark,outcome=mortality,T=48.0,dt=4.0.out │ │ ├── nofreq,benchmark,outcome=mortality,T=48.0,dt=48.0.err │ │ ├── nofreq,benchmark,outcome=mortality,T=48.0,dt=48.0.out │ │ ├── noimpute,benchmark,outcome=mortality,T=48.0,dt=1.0.err │ │ ├── noimpute,benchmark,outcome=mortality,T=48.0,dt=1.0.out │ │ ├── noimpute,benchmark,outcome=mortality,T=48.0,dt=12.0.err │ │ ├── noimpute,benchmark,outcome=mortality,T=48.0,dt=12.0.out │ │ ├── noimpute,benchmark,outcome=mortality,T=48.0,dt=4.0.err │ │ ├── noimpute,benchmark,outcome=mortality,T=48.0,dt=4.0.out │ │ ├── ordinal,benchmark,outcome=mortality,T=48.0,dt=1.0.err │ │ ├── ordinal,benchmark,outcome=mortality,T=48.0,dt=1.0.out │ │ ├── theta=0.001,medianimpute,benchmark,outcome=mortality,T=48.0,dt=1.0.err │ │ ├── theta=0.001,medianimpute,benchmark,outcome=mortality,T=48.0,dt=1.0.out │ │ ├── theta=0.001,noimpute,benchmark,outcome=mortality,T=48.0,dt=1.0.err │ │ └── theta=0.001,noimpute,benchmark,outcome=mortality,T=48.0,dt=1.0.out │ ├── run_mortality_impute.sh │ ├── run_mortality_mask+Dt.sh │ ├── run_mortality_maskonly.sh │ ├── run_mortality_nofreq.sh │ ├── run_mortality_noimpute.sh │ └── run_mortality_ordinal.sh └── 3_ML_models │ ├── config.yaml │ ├── lib │ ├── data.py │ ├── evaluate.py │ ├── experiment.py │ ├── models.py │ └── trainer.py │ ├── run_shallow_ablations.sh │ ├── run_shallow_impute.py │ ├── run_shallow_maskonly.py │ ├── run_shallow_medianimpute.py │ ├── run_shallow_nofreq.py │ ├── run_shallow_noimpute.py │ └── run_shallow_ordinal.py ├── mimic3_comparisons ├── 2_apply_FIDDLE │ ├── log │ │ ├── dt=12.0,benchmark,outcome=mortality,T=48.0,dt=1.0.err │ │ ├── dt=12.0,benchmark,outcome=mortality,T=48.0,dt=1.0.out │ │ ├── dt=24.0,benchmark,outcome=mortality,T=48.0,dt=1.0.err │ │ ├── dt=24.0,benchmark,outcome=mortality,T=48.0,dt=1.0.out │ │ ├── dt=4.0,benchmark,outcome=mortality,T=48.0,dt=1.0.err │ │ ├── dt=4.0,benchmark,outcome=mortality,T=48.0,dt=1.0.out │ │ ├── dt=48.0,benchmark,outcome=mortality,T=48.0,dt=1.0.err │ │ ├── dt=48.0,benchmark,outcome=mortality,T=48.0,dt=1.0.out │ │ ├── theta=0.01,benchmark,outcome=mortality,T=48.0,dt=1.0.err │ │ ├── theta=0.01,benchmark,outcome=mortality,T=48.0,dt=1.0.out │ │ ├── theta=0.05,benchmark,outcome=mortality,T=48.0,dt=1.0.err │ │ ├── theta=0.05,benchmark,outcome=mortality,T=48.0,dt=1.0.out │ │ ├── theta=0.1,benchmark,outcome=mortality,T=48.0,dt=1.0.err │ │ ├── theta=0.1,benchmark,outcome=mortality,T=48.0,dt=1.0.out │ │ ├── theta=0.2,benchmark,outcome=mortality,T=48.0,dt=1.0.err │ │ ├── theta=0.2,benchmark,outcome=mortality,T=48.0,dt=1.0.out │ │ ├── theta=0.4,benchmark,outcome=mortality,T=48.0,dt=1.0.err │ │ └── theta=0.4,benchmark,outcome=mortality,T=48.0,dt=1.0.out │ ├── run_mortality_dt.sh │ └── run_mortality_theta.sh └── 3_ML_models │ ├── config.yaml │ ├── lib │ ├── data.py │ ├── evaluate.py │ ├── experiment.py │ ├── models.py │ └── trainer.py │ ├── run_shallow_dt.py │ ├── run_shallow_dt.sh │ ├── run_shallow_theta.py │ └── run_shallow_theta.sh └── mimic3_experiments ├── 1_data_extraction ├── FIDDLE_input_lengths.ipynb ├── InclusionExclusion.ipynb ├── LabelDistributions.ipynb ├── PopulationSummary.ipynb ├── config.py ├── extract_data.py ├── generate_labels.py ├── grouped_variables.yaml ├── prepare_input.py ├── resources │ ├── IHM_benchmark.ipynb │ ├── all_stays.csv │ ├── test_listfile.csv │ ├── train_listfile.csv │ └── val_listfile.csv └── run_prepare_all.sh ├── 2_apply_FIDDLE ├── log,discretize=no │ ├── benchmark,outcome=mortality,T=48.0,dt=1.0.err │ ├── benchmark,outcome=mortality,T=48.0,dt=1.0.out │ ├── outcome=ARF,T=12.0,dt=1.0.err │ ├── outcome=ARF,T=12.0,dt=1.0.out │ ├── outcome=ARF,T=4.0,dt=1.0.err │ ├── outcome=ARF,T=4.0,dt=1.0.out │ ├── outcome=Shock,T=12.0,dt=1.0.err │ ├── outcome=Shock,T=12.0,dt=1.0.out │ ├── outcome=Shock,T=4.0,dt=1.0.err │ └── outcome=Shock,T=4.0,dt=1.0.out ├── log │ ├── benchmark,outcome=mortality,T=48.0,dt=1.0.err │ ├── benchmark,outcome=mortality,T=48.0,dt=1.0.out │ ├── outcome=ARF,T=12.0,dt=1.0.err │ ├── outcome=ARF,T=12.0,dt=1.0.out │ ├── outcome=ARF,T=4.0,dt=1.0.err │ ├── outcome=ARF,T=4.0,dt=1.0.out │ ├── outcome=Shock,T=12.0,dt=1.0.err │ ├── outcome=Shock,T=12.0,dt=1.0.out │ ├── outcome=Shock,T=4.0,dt=1.0.err │ ├── outcome=Shock,T=4.0,dt=1.0.out │ ├── outcome=mortality,T=48.0,dt=1.0.err │ └── outcome=mortality,T=48.0,dt=1.0.out ├── run_make_all,discretize=no.sh └── run_make_all.sh ├── 3_ML_models ├── DataSummary.ipynb ├── README.md ├── config.yaml ├── lib │ ├── data.py │ ├── evaluate.py │ ├── experiment.py │ ├── models.py │ └── trainer.py ├── run_deep.py ├── run_deep_all.sh ├── run_deep_eval.py ├── run_shallow.py └── run_shallow_all.sh ├── 4_evaluation ├── CombineFigures.ipynb ├── Evaluation.ipynb ├── PredictionGap.ipynb ├── d_items.csv └── d_labitems.csv ├── 5_baseline_NEWS ├── CalculateNEWS.ipynb └── NEWS_table.jpg ├── README.md └── config.yaml /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/.gitignore -------------------------------------------------------------------------------- /.gitmodules: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/.gitmodules -------------------------------------------------------------------------------- /90-day-post-discharge-mortality/FIDDLE_icd/config.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/90-day-post-discharge-mortality/FIDDLE_icd/config.py -------------------------------------------------------------------------------- /90-day-post-discharge-mortality/FIDDLE_icd/config.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/90-day-post-discharge-mortality/FIDDLE_icd/config.yaml -------------------------------------------------------------------------------- /90-day-post-discharge-mortality/FIDDLE_icd/helpers.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/90-day-post-discharge-mortality/FIDDLE_icd/helpers.py -------------------------------------------------------------------------------- /90-day-post-discharge-mortality/FIDDLE_icd/run.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/90-day-post-discharge-mortality/FIDDLE_icd/run.py -------------------------------------------------------------------------------- /90-day-post-discharge-mortality/FIDDLE_icd/steps.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/90-day-post-discharge-mortality/FIDDLE_icd/steps.py -------------------------------------------------------------------------------- /90-day-post-discharge-mortality/cohort.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/90-day-post-discharge-mortality/cohort.ipynb -------------------------------------------------------------------------------- /90-day-post-discharge-mortality/helper.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/90-day-post-discharge-mortality/helper.py -------------------------------------------------------------------------------- /90-day-post-discharge-mortality/log/model_clinical.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/90-day-post-discharge-mortality/log/model_clinical.txt -------------------------------------------------------------------------------- /90-day-post-discharge-mortality/log/model_clinical_icd[0,1,2].txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/90-day-post-discharge-mortality/log/model_clinical_icd[0,1,2].txt -------------------------------------------------------------------------------- /90-day-post-discharge-mortality/log/model_clinical_icd[0,1].txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/90-day-post-discharge-mortality/log/model_clinical_icd[0,1].txt -------------------------------------------------------------------------------- /90-day-post-discharge-mortality/log/model_clinical_icd[0].txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/90-day-post-discharge-mortality/log/model_clinical_icd[0].txt -------------------------------------------------------------------------------- /90-day-post-discharge-mortality/main.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/90-day-post-discharge-mortality/main.ipynb -------------------------------------------------------------------------------- /90-day-post-discharge-mortality/model.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/90-day-post-discharge-mortality/model.ipynb -------------------------------------------------------------------------------- /90-day-post-discharge-mortality/model_clinical.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/90-day-post-discharge-mortality/model_clinical.py -------------------------------------------------------------------------------- /90-day-post-discharge-mortality/model_clinical_icd[0,1,2].py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/90-day-post-discharge-mortality/model_clinical_icd[0,1,2].py -------------------------------------------------------------------------------- /90-day-post-discharge-mortality/model_clinical_icd[0,1].py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/90-day-post-discharge-mortality/model_clinical_icd[0,1].py -------------------------------------------------------------------------------- /90-day-post-discharge-mortality/model_clinical_icd[0].py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/90-day-post-discharge-mortality/model_clinical_icd[0].py -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/README.md -------------------------------------------------------------------------------- /eicu_experiments/1_data_extraction/PopulationSummary.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/eicu_experiments/1_data_extraction/PopulationSummary.ipynb -------------------------------------------------------------------------------- /eicu_experiments/1_data_extraction/extract_medication.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/eicu_experiments/1_data_extraction/extract_medication.py -------------------------------------------------------------------------------- /eicu_experiments/1_data_extraction/extract_nurseCharting.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/eicu_experiments/1_data_extraction/extract_nurseCharting.py -------------------------------------------------------------------------------- /eicu_experiments/1_data_extraction/extract_other_tables.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/eicu_experiments/1_data_extraction/extract_other_tables.ipynb -------------------------------------------------------------------------------- /eicu_experiments/1_data_extraction/extract_pivoted.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/eicu_experiments/1_data_extraction/extract_pivoted.py -------------------------------------------------------------------------------- /eicu_experiments/1_data_extraction/extract_resp_IO.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/eicu_experiments/1_data_extraction/extract_resp_IO.ipynb -------------------------------------------------------------------------------- /eicu_experiments/1_data_extraction/generate_labels.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/eicu_experiments/1_data_extraction/generate_labels.ipynb -------------------------------------------------------------------------------- /eicu_experiments/1_data_extraction/population_ARF.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/eicu_experiments/1_data_extraction/population_ARF.ipynb -------------------------------------------------------------------------------- /eicu_experiments/1_data_extraction/population_Shock.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/eicu_experiments/1_data_extraction/population_Shock.ipynb -------------------------------------------------------------------------------- /eicu_experiments/1_data_extraction/population_mortality.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/eicu_experiments/1_data_extraction/population_mortality.ipynb -------------------------------------------------------------------------------- /eicu_experiments/2_apply_FIDDLE/prepare_data.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/eicu_experiments/2_apply_FIDDLE/prepare_data.py -------------------------------------------------------------------------------- /eicu_experiments/2_apply_FIDDLE/prepare_data.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/eicu_experiments/2_apply_FIDDLE/prepare_data.sh -------------------------------------------------------------------------------- /eicu_experiments/2_apply_FIDDLE/prepare_data_mortality.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/eicu_experiments/2_apply_FIDDLE/prepare_data_mortality.py -------------------------------------------------------------------------------- /eicu_experiments/2_apply_FIDDLE/run_make_all.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/eicu_experiments/2_apply_FIDDLE/run_make_all.sh -------------------------------------------------------------------------------- /eicu_experiments/3_ML_models/DataSummary.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/eicu_experiments/3_ML_models/DataSummary.ipynb -------------------------------------------------------------------------------- /eicu_experiments/3_ML_models/Test.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/eicu_experiments/3_ML_models/Test.ipynb -------------------------------------------------------------------------------- /eicu_experiments/3_ML_models/config.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/eicu_experiments/3_ML_models/config.yaml -------------------------------------------------------------------------------- /eicu_experiments/3_ML_models/lib/data.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/eicu_experiments/3_ML_models/lib/data.py -------------------------------------------------------------------------------- /eicu_experiments/3_ML_models/lib/evaluate.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/eicu_experiments/3_ML_models/lib/evaluate.py -------------------------------------------------------------------------------- /eicu_experiments/3_ML_models/lib/experiment.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/eicu_experiments/3_ML_models/lib/experiment.py -------------------------------------------------------------------------------- /eicu_experiments/3_ML_models/lib/models.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/eicu_experiments/3_ML_models/lib/models.py -------------------------------------------------------------------------------- /eicu_experiments/3_ML_models/lib/trainer.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/eicu_experiments/3_ML_models/lib/trainer.py -------------------------------------------------------------------------------- /eicu_experiments/3_ML_models/run_deep.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/eicu_experiments/3_ML_models/run_deep.py -------------------------------------------------------------------------------- /eicu_experiments/3_ML_models/run_deep_all.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/eicu_experiments/3_ML_models/run_deep_all.sh -------------------------------------------------------------------------------- /eicu_experiments/3_ML_models/run_deep_eval.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/eicu_experiments/3_ML_models/run_deep_eval.py -------------------------------------------------------------------------------- /eicu_experiments/3_ML_models/run_shallow.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/eicu_experiments/3_ML_models/run_shallow.py -------------------------------------------------------------------------------- /eicu_experiments/3_ML_models/run_shallow_all.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/eicu_experiments/3_ML_models/run_shallow_all.sh -------------------------------------------------------------------------------- /environment.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/environment.yml -------------------------------------------------------------------------------- /mimic3_ablations/2_apply_FIDDLE/FIDDLE_mask+Dt/config.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_ablations/2_apply_FIDDLE/FIDDLE_mask+Dt/config.py -------------------------------------------------------------------------------- /mimic3_ablations/2_apply_FIDDLE/FIDDLE_mask+Dt/config.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_ablations/2_apply_FIDDLE/FIDDLE_mask+Dt/config.yaml -------------------------------------------------------------------------------- /mimic3_ablations/2_apply_FIDDLE/FIDDLE_mask+Dt/helpers.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_ablations/2_apply_FIDDLE/FIDDLE_mask+Dt/helpers.py -------------------------------------------------------------------------------- /mimic3_ablations/2_apply_FIDDLE/FIDDLE_mask+Dt/run.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_ablations/2_apply_FIDDLE/FIDDLE_mask+Dt/run.py -------------------------------------------------------------------------------- /mimic3_ablations/2_apply_FIDDLE/FIDDLE_mask+Dt/steps.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_ablations/2_apply_FIDDLE/FIDDLE_mask+Dt/steps.py -------------------------------------------------------------------------------- /mimic3_ablations/2_apply_FIDDLE/FIDDLE_maskonly/config.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_ablations/2_apply_FIDDLE/FIDDLE_maskonly/config.py -------------------------------------------------------------------------------- /mimic3_ablations/2_apply_FIDDLE/FIDDLE_maskonly/config.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_ablations/2_apply_FIDDLE/FIDDLE_maskonly/config.yaml -------------------------------------------------------------------------------- /mimic3_ablations/2_apply_FIDDLE/FIDDLE_maskonly/helpers.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_ablations/2_apply_FIDDLE/FIDDLE_maskonly/helpers.py -------------------------------------------------------------------------------- /mimic3_ablations/2_apply_FIDDLE/FIDDLE_maskonly/run.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_ablations/2_apply_FIDDLE/FIDDLE_maskonly/run.py -------------------------------------------------------------------------------- /mimic3_ablations/2_apply_FIDDLE/FIDDLE_maskonly/steps.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_ablations/2_apply_FIDDLE/FIDDLE_maskonly/steps.py -------------------------------------------------------------------------------- /mimic3_ablations/2_apply_FIDDLE/FIDDLE_medianimpute/config.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_ablations/2_apply_FIDDLE/FIDDLE_medianimpute/config.py -------------------------------------------------------------------------------- /mimic3_ablations/2_apply_FIDDLE/FIDDLE_medianimpute/config.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_ablations/2_apply_FIDDLE/FIDDLE_medianimpute/config.yaml -------------------------------------------------------------------------------- /mimic3_ablations/2_apply_FIDDLE/FIDDLE_medianimpute/helpers.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_ablations/2_apply_FIDDLE/FIDDLE_medianimpute/helpers.py -------------------------------------------------------------------------------- /mimic3_ablations/2_apply_FIDDLE/FIDDLE_medianimpute/run.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_ablations/2_apply_FIDDLE/FIDDLE_medianimpute/run.py -------------------------------------------------------------------------------- /mimic3_ablations/2_apply_FIDDLE/FIDDLE_medianimpute/steps.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_ablations/2_apply_FIDDLE/FIDDLE_medianimpute/steps.py -------------------------------------------------------------------------------- /mimic3_ablations/2_apply_FIDDLE/FIDDLE_noimpute/config.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_ablations/2_apply_FIDDLE/FIDDLE_noimpute/config.py -------------------------------------------------------------------------------- /mimic3_ablations/2_apply_FIDDLE/FIDDLE_noimpute/config.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_ablations/2_apply_FIDDLE/FIDDLE_noimpute/config.yaml -------------------------------------------------------------------------------- /mimic3_ablations/2_apply_FIDDLE/FIDDLE_noimpute/helpers.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_ablations/2_apply_FIDDLE/FIDDLE_noimpute/helpers.py -------------------------------------------------------------------------------- /mimic3_ablations/2_apply_FIDDLE/FIDDLE_noimpute/run.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_ablations/2_apply_FIDDLE/FIDDLE_noimpute/run.py -------------------------------------------------------------------------------- /mimic3_ablations/2_apply_FIDDLE/FIDDLE_noimpute/steps.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_ablations/2_apply_FIDDLE/FIDDLE_noimpute/steps.py -------------------------------------------------------------------------------- /mimic3_ablations/2_apply_FIDDLE/FIDDLE_ordinal/config.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_ablations/2_apply_FIDDLE/FIDDLE_ordinal/config.py -------------------------------------------------------------------------------- /mimic3_ablations/2_apply_FIDDLE/FIDDLE_ordinal/config.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_ablations/2_apply_FIDDLE/FIDDLE_ordinal/config.yaml -------------------------------------------------------------------------------- /mimic3_ablations/2_apply_FIDDLE/FIDDLE_ordinal/helpers.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_ablations/2_apply_FIDDLE/FIDDLE_ordinal/helpers.py -------------------------------------------------------------------------------- /mimic3_ablations/2_apply_FIDDLE/FIDDLE_ordinal/run.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_ablations/2_apply_FIDDLE/FIDDLE_ordinal/run.py -------------------------------------------------------------------------------- /mimic3_ablations/2_apply_FIDDLE/FIDDLE_ordinal/steps.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_ablations/2_apply_FIDDLE/FIDDLE_ordinal/steps.py -------------------------------------------------------------------------------- /mimic3_ablations/2_apply_FIDDLE/log/impute,benchmark,outcome=mortality,T=48.0,dt=1.0.err: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_ablations/2_apply_FIDDLE/log/impute,benchmark,outcome=mortality,T=48.0,dt=1.0.err -------------------------------------------------------------------------------- /mimic3_ablations/2_apply_FIDDLE/log/impute,benchmark,outcome=mortality,T=48.0,dt=1.0.out: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_ablations/2_apply_FIDDLE/log/impute,benchmark,outcome=mortality,T=48.0,dt=1.0.out -------------------------------------------------------------------------------- /mimic3_ablations/2_apply_FIDDLE/log/impute,benchmark,outcome=mortality,T=48.0,dt=12.0.err: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_ablations/2_apply_FIDDLE/log/impute,benchmark,outcome=mortality,T=48.0,dt=12.0.err -------------------------------------------------------------------------------- /mimic3_ablations/2_apply_FIDDLE/log/impute,benchmark,outcome=mortality,T=48.0,dt=12.0.out: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_ablations/2_apply_FIDDLE/log/impute,benchmark,outcome=mortality,T=48.0,dt=12.0.out -------------------------------------------------------------------------------- /mimic3_ablations/2_apply_FIDDLE/log/impute,benchmark,outcome=mortality,T=48.0,dt=4.0.err: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_ablations/2_apply_FIDDLE/log/impute,benchmark,outcome=mortality,T=48.0,dt=4.0.err -------------------------------------------------------------------------------- /mimic3_ablations/2_apply_FIDDLE/log/impute,benchmark,outcome=mortality,T=48.0,dt=4.0.out: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_ablations/2_apply_FIDDLE/log/impute,benchmark,outcome=mortality,T=48.0,dt=4.0.out -------------------------------------------------------------------------------- /mimic3_ablations/2_apply_FIDDLE/log/mask+Dt,benchmark,outcome=mortality,T=48.0,dt=1.0.err: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_ablations/2_apply_FIDDLE/log/mask+Dt,benchmark,outcome=mortality,T=48.0,dt=1.0.err -------------------------------------------------------------------------------- /mimic3_ablations/2_apply_FIDDLE/log/mask+Dt,benchmark,outcome=mortality,T=48.0,dt=1.0.out: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_ablations/2_apply_FIDDLE/log/mask+Dt,benchmark,outcome=mortality,T=48.0,dt=1.0.out -------------------------------------------------------------------------------- /mimic3_ablations/2_apply_FIDDLE/log/maskonly,benchmark,outcome=mortality,T=48.0,dt=1.0.err: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_ablations/2_apply_FIDDLE/log/maskonly,benchmark,outcome=mortality,T=48.0,dt=1.0.err -------------------------------------------------------------------------------- /mimic3_ablations/2_apply_FIDDLE/log/maskonly,benchmark,outcome=mortality,T=48.0,dt=1.0.out: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_ablations/2_apply_FIDDLE/log/maskonly,benchmark,outcome=mortality,T=48.0,dt=1.0.out -------------------------------------------------------------------------------- /mimic3_ablations/2_apply_FIDDLE/log/medianimpute,benchmark,outcome=mortality,T=48.0,dt=1.0.err: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_ablations/2_apply_FIDDLE/log/medianimpute,benchmark,outcome=mortality,T=48.0,dt=1.0.err -------------------------------------------------------------------------------- /mimic3_ablations/2_apply_FIDDLE/log/medianimpute,benchmark,outcome=mortality,T=48.0,dt=1.0.out: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_ablations/2_apply_FIDDLE/log/medianimpute,benchmark,outcome=mortality,T=48.0,dt=1.0.out -------------------------------------------------------------------------------- /mimic3_ablations/2_apply_FIDDLE/log/medianimpute,benchmark,outcome=mortality,T=48.0,dt=12.0.err: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_ablations/2_apply_FIDDLE/log/medianimpute,benchmark,outcome=mortality,T=48.0,dt=12.0.err -------------------------------------------------------------------------------- /mimic3_ablations/2_apply_FIDDLE/log/medianimpute,benchmark,outcome=mortality,T=48.0,dt=12.0.out: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_ablations/2_apply_FIDDLE/log/medianimpute,benchmark,outcome=mortality,T=48.0,dt=12.0.out -------------------------------------------------------------------------------- /mimic3_ablations/2_apply_FIDDLE/log/medianimpute,benchmark,outcome=mortality,T=48.0,dt=4.0.err: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_ablations/2_apply_FIDDLE/log/medianimpute,benchmark,outcome=mortality,T=48.0,dt=4.0.err -------------------------------------------------------------------------------- /mimic3_ablations/2_apply_FIDDLE/log/medianimpute,benchmark,outcome=mortality,T=48.0,dt=4.0.out: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_ablations/2_apply_FIDDLE/log/medianimpute,benchmark,outcome=mortality,T=48.0,dt=4.0.out -------------------------------------------------------------------------------- /mimic3_ablations/2_apply_FIDDLE/log/nofreq,benchmark,outcome=mortality,T=48.0,dt=1.0.err: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_ablations/2_apply_FIDDLE/log/nofreq,benchmark,outcome=mortality,T=48.0,dt=1.0.err -------------------------------------------------------------------------------- /mimic3_ablations/2_apply_FIDDLE/log/nofreq,benchmark,outcome=mortality,T=48.0,dt=1.0.out: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_ablations/2_apply_FIDDLE/log/nofreq,benchmark,outcome=mortality,T=48.0,dt=1.0.out -------------------------------------------------------------------------------- /mimic3_ablations/2_apply_FIDDLE/log/nofreq,benchmark,outcome=mortality,T=48.0,dt=12.0.err: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_ablations/2_apply_FIDDLE/log/nofreq,benchmark,outcome=mortality,T=48.0,dt=12.0.err -------------------------------------------------------------------------------- /mimic3_ablations/2_apply_FIDDLE/log/nofreq,benchmark,outcome=mortality,T=48.0,dt=12.0.out: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_ablations/2_apply_FIDDLE/log/nofreq,benchmark,outcome=mortality,T=48.0,dt=12.0.out -------------------------------------------------------------------------------- /mimic3_ablations/2_apply_FIDDLE/log/nofreq,benchmark,outcome=mortality,T=48.0,dt=4.0.err: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_ablations/2_apply_FIDDLE/log/nofreq,benchmark,outcome=mortality,T=48.0,dt=4.0.err -------------------------------------------------------------------------------- /mimic3_ablations/2_apply_FIDDLE/log/nofreq,benchmark,outcome=mortality,T=48.0,dt=4.0.out: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_ablations/2_apply_FIDDLE/log/nofreq,benchmark,outcome=mortality,T=48.0,dt=4.0.out -------------------------------------------------------------------------------- /mimic3_ablations/2_apply_FIDDLE/log/nofreq,benchmark,outcome=mortality,T=48.0,dt=48.0.err: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_ablations/2_apply_FIDDLE/log/nofreq,benchmark,outcome=mortality,T=48.0,dt=48.0.err -------------------------------------------------------------------------------- /mimic3_ablations/2_apply_FIDDLE/log/nofreq,benchmark,outcome=mortality,T=48.0,dt=48.0.out: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_ablations/2_apply_FIDDLE/log/nofreq,benchmark,outcome=mortality,T=48.0,dt=48.0.out -------------------------------------------------------------------------------- /mimic3_ablations/2_apply_FIDDLE/log/noimpute,benchmark,outcome=mortality,T=48.0,dt=1.0.err: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_ablations/2_apply_FIDDLE/log/noimpute,benchmark,outcome=mortality,T=48.0,dt=1.0.err -------------------------------------------------------------------------------- /mimic3_ablations/2_apply_FIDDLE/log/noimpute,benchmark,outcome=mortality,T=48.0,dt=1.0.out: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_ablations/2_apply_FIDDLE/log/noimpute,benchmark,outcome=mortality,T=48.0,dt=1.0.out -------------------------------------------------------------------------------- /mimic3_ablations/2_apply_FIDDLE/log/noimpute,benchmark,outcome=mortality,T=48.0,dt=12.0.err: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_ablations/2_apply_FIDDLE/log/noimpute,benchmark,outcome=mortality,T=48.0,dt=12.0.err -------------------------------------------------------------------------------- /mimic3_ablations/2_apply_FIDDLE/log/noimpute,benchmark,outcome=mortality,T=48.0,dt=12.0.out: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_ablations/2_apply_FIDDLE/log/noimpute,benchmark,outcome=mortality,T=48.0,dt=12.0.out -------------------------------------------------------------------------------- /mimic3_ablations/2_apply_FIDDLE/log/noimpute,benchmark,outcome=mortality,T=48.0,dt=4.0.err: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_ablations/2_apply_FIDDLE/log/noimpute,benchmark,outcome=mortality,T=48.0,dt=4.0.err -------------------------------------------------------------------------------- /mimic3_ablations/2_apply_FIDDLE/log/noimpute,benchmark,outcome=mortality,T=48.0,dt=4.0.out: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_ablations/2_apply_FIDDLE/log/noimpute,benchmark,outcome=mortality,T=48.0,dt=4.0.out -------------------------------------------------------------------------------- /mimic3_ablations/2_apply_FIDDLE/log/ordinal,benchmark,outcome=mortality,T=48.0,dt=1.0.err: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_ablations/2_apply_FIDDLE/log/ordinal,benchmark,outcome=mortality,T=48.0,dt=1.0.err -------------------------------------------------------------------------------- /mimic3_ablations/2_apply_FIDDLE/log/ordinal,benchmark,outcome=mortality,T=48.0,dt=1.0.out: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_ablations/2_apply_FIDDLE/log/ordinal,benchmark,outcome=mortality,T=48.0,dt=1.0.out -------------------------------------------------------------------------------- /mimic3_ablations/2_apply_FIDDLE/log/theta=0.001,medianimpute,benchmark,outcome=mortality,T=48.0,dt=1.0.err: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_ablations/2_apply_FIDDLE/log/theta=0.001,medianimpute,benchmark,outcome=mortality,T=48.0,dt=1.0.err -------------------------------------------------------------------------------- /mimic3_ablations/2_apply_FIDDLE/log/theta=0.001,medianimpute,benchmark,outcome=mortality,T=48.0,dt=1.0.out: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_ablations/2_apply_FIDDLE/log/theta=0.001,medianimpute,benchmark,outcome=mortality,T=48.0,dt=1.0.out -------------------------------------------------------------------------------- /mimic3_ablations/2_apply_FIDDLE/log/theta=0.001,noimpute,benchmark,outcome=mortality,T=48.0,dt=1.0.err: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_ablations/2_apply_FIDDLE/log/theta=0.001,noimpute,benchmark,outcome=mortality,T=48.0,dt=1.0.err -------------------------------------------------------------------------------- /mimic3_ablations/2_apply_FIDDLE/log/theta=0.001,noimpute,benchmark,outcome=mortality,T=48.0,dt=1.0.out: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_ablations/2_apply_FIDDLE/log/theta=0.001,noimpute,benchmark,outcome=mortality,T=48.0,dt=1.0.out -------------------------------------------------------------------------------- /mimic3_ablations/2_apply_FIDDLE/run_mortality_impute.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_ablations/2_apply_FIDDLE/run_mortality_impute.sh -------------------------------------------------------------------------------- /mimic3_ablations/2_apply_FIDDLE/run_mortality_mask+Dt.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_ablations/2_apply_FIDDLE/run_mortality_mask+Dt.sh -------------------------------------------------------------------------------- /mimic3_ablations/2_apply_FIDDLE/run_mortality_maskonly.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_ablations/2_apply_FIDDLE/run_mortality_maskonly.sh -------------------------------------------------------------------------------- /mimic3_ablations/2_apply_FIDDLE/run_mortality_nofreq.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_ablations/2_apply_FIDDLE/run_mortality_nofreq.sh -------------------------------------------------------------------------------- /mimic3_ablations/2_apply_FIDDLE/run_mortality_noimpute.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_ablations/2_apply_FIDDLE/run_mortality_noimpute.sh -------------------------------------------------------------------------------- /mimic3_ablations/2_apply_FIDDLE/run_mortality_ordinal.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_ablations/2_apply_FIDDLE/run_mortality_ordinal.sh -------------------------------------------------------------------------------- /mimic3_ablations/3_ML_models/config.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_ablations/3_ML_models/config.yaml -------------------------------------------------------------------------------- /mimic3_ablations/3_ML_models/lib/data.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_ablations/3_ML_models/lib/data.py -------------------------------------------------------------------------------- /mimic3_ablations/3_ML_models/lib/evaluate.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_ablations/3_ML_models/lib/evaluate.py -------------------------------------------------------------------------------- /mimic3_ablations/3_ML_models/lib/experiment.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_ablations/3_ML_models/lib/experiment.py -------------------------------------------------------------------------------- /mimic3_ablations/3_ML_models/lib/models.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_ablations/3_ML_models/lib/models.py -------------------------------------------------------------------------------- /mimic3_ablations/3_ML_models/lib/trainer.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_ablations/3_ML_models/lib/trainer.py -------------------------------------------------------------------------------- /mimic3_ablations/3_ML_models/run_shallow_ablations.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_ablations/3_ML_models/run_shallow_ablations.sh -------------------------------------------------------------------------------- /mimic3_ablations/3_ML_models/run_shallow_impute.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_ablations/3_ML_models/run_shallow_impute.py -------------------------------------------------------------------------------- /mimic3_ablations/3_ML_models/run_shallow_maskonly.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_ablations/3_ML_models/run_shallow_maskonly.py -------------------------------------------------------------------------------- /mimic3_ablations/3_ML_models/run_shallow_medianimpute.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_ablations/3_ML_models/run_shallow_medianimpute.py -------------------------------------------------------------------------------- /mimic3_ablations/3_ML_models/run_shallow_nofreq.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_ablations/3_ML_models/run_shallow_nofreq.py -------------------------------------------------------------------------------- /mimic3_ablations/3_ML_models/run_shallow_noimpute.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_ablations/3_ML_models/run_shallow_noimpute.py -------------------------------------------------------------------------------- /mimic3_ablations/3_ML_models/run_shallow_ordinal.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_ablations/3_ML_models/run_shallow_ordinal.py -------------------------------------------------------------------------------- /mimic3_comparisons/2_apply_FIDDLE/log/dt=12.0,benchmark,outcome=mortality,T=48.0,dt=1.0.err: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_comparisons/2_apply_FIDDLE/log/dt=12.0,benchmark,outcome=mortality,T=48.0,dt=1.0.err -------------------------------------------------------------------------------- /mimic3_comparisons/2_apply_FIDDLE/log/dt=12.0,benchmark,outcome=mortality,T=48.0,dt=1.0.out: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_comparisons/2_apply_FIDDLE/log/dt=12.0,benchmark,outcome=mortality,T=48.0,dt=1.0.out -------------------------------------------------------------------------------- /mimic3_comparisons/2_apply_FIDDLE/log/dt=24.0,benchmark,outcome=mortality,T=48.0,dt=1.0.err: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_comparisons/2_apply_FIDDLE/log/dt=24.0,benchmark,outcome=mortality,T=48.0,dt=1.0.err -------------------------------------------------------------------------------- /mimic3_comparisons/2_apply_FIDDLE/log/dt=24.0,benchmark,outcome=mortality,T=48.0,dt=1.0.out: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_comparisons/2_apply_FIDDLE/log/dt=24.0,benchmark,outcome=mortality,T=48.0,dt=1.0.out -------------------------------------------------------------------------------- /mimic3_comparisons/2_apply_FIDDLE/log/dt=4.0,benchmark,outcome=mortality,T=48.0,dt=1.0.err: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_comparisons/2_apply_FIDDLE/log/dt=4.0,benchmark,outcome=mortality,T=48.0,dt=1.0.err -------------------------------------------------------------------------------- /mimic3_comparisons/2_apply_FIDDLE/log/dt=4.0,benchmark,outcome=mortality,T=48.0,dt=1.0.out: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_comparisons/2_apply_FIDDLE/log/dt=4.0,benchmark,outcome=mortality,T=48.0,dt=1.0.out -------------------------------------------------------------------------------- /mimic3_comparisons/2_apply_FIDDLE/log/dt=48.0,benchmark,outcome=mortality,T=48.0,dt=1.0.err: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_comparisons/2_apply_FIDDLE/log/dt=48.0,benchmark,outcome=mortality,T=48.0,dt=1.0.err -------------------------------------------------------------------------------- /mimic3_comparisons/2_apply_FIDDLE/log/dt=48.0,benchmark,outcome=mortality,T=48.0,dt=1.0.out: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_comparisons/2_apply_FIDDLE/log/dt=48.0,benchmark,outcome=mortality,T=48.0,dt=1.0.out -------------------------------------------------------------------------------- /mimic3_comparisons/2_apply_FIDDLE/log/theta=0.01,benchmark,outcome=mortality,T=48.0,dt=1.0.err: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_comparisons/2_apply_FIDDLE/log/theta=0.01,benchmark,outcome=mortality,T=48.0,dt=1.0.err -------------------------------------------------------------------------------- /mimic3_comparisons/2_apply_FIDDLE/log/theta=0.01,benchmark,outcome=mortality,T=48.0,dt=1.0.out: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_comparisons/2_apply_FIDDLE/log/theta=0.01,benchmark,outcome=mortality,T=48.0,dt=1.0.out -------------------------------------------------------------------------------- /mimic3_comparisons/2_apply_FIDDLE/log/theta=0.05,benchmark,outcome=mortality,T=48.0,dt=1.0.err: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_comparisons/2_apply_FIDDLE/log/theta=0.05,benchmark,outcome=mortality,T=48.0,dt=1.0.err -------------------------------------------------------------------------------- /mimic3_comparisons/2_apply_FIDDLE/log/theta=0.05,benchmark,outcome=mortality,T=48.0,dt=1.0.out: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_comparisons/2_apply_FIDDLE/log/theta=0.05,benchmark,outcome=mortality,T=48.0,dt=1.0.out -------------------------------------------------------------------------------- /mimic3_comparisons/2_apply_FIDDLE/log/theta=0.1,benchmark,outcome=mortality,T=48.0,dt=1.0.err: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_comparisons/2_apply_FIDDLE/log/theta=0.1,benchmark,outcome=mortality,T=48.0,dt=1.0.err -------------------------------------------------------------------------------- /mimic3_comparisons/2_apply_FIDDLE/log/theta=0.1,benchmark,outcome=mortality,T=48.0,dt=1.0.out: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_comparisons/2_apply_FIDDLE/log/theta=0.1,benchmark,outcome=mortality,T=48.0,dt=1.0.out -------------------------------------------------------------------------------- /mimic3_comparisons/2_apply_FIDDLE/log/theta=0.2,benchmark,outcome=mortality,T=48.0,dt=1.0.err: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_comparisons/2_apply_FIDDLE/log/theta=0.2,benchmark,outcome=mortality,T=48.0,dt=1.0.err -------------------------------------------------------------------------------- /mimic3_comparisons/2_apply_FIDDLE/log/theta=0.2,benchmark,outcome=mortality,T=48.0,dt=1.0.out: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_comparisons/2_apply_FIDDLE/log/theta=0.2,benchmark,outcome=mortality,T=48.0,dt=1.0.out -------------------------------------------------------------------------------- /mimic3_comparisons/2_apply_FIDDLE/log/theta=0.4,benchmark,outcome=mortality,T=48.0,dt=1.0.err: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_comparisons/2_apply_FIDDLE/log/theta=0.4,benchmark,outcome=mortality,T=48.0,dt=1.0.err -------------------------------------------------------------------------------- /mimic3_comparisons/2_apply_FIDDLE/log/theta=0.4,benchmark,outcome=mortality,T=48.0,dt=1.0.out: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_comparisons/2_apply_FIDDLE/log/theta=0.4,benchmark,outcome=mortality,T=48.0,dt=1.0.out -------------------------------------------------------------------------------- /mimic3_comparisons/2_apply_FIDDLE/run_mortality_dt.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_comparisons/2_apply_FIDDLE/run_mortality_dt.sh -------------------------------------------------------------------------------- /mimic3_comparisons/2_apply_FIDDLE/run_mortality_theta.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_comparisons/2_apply_FIDDLE/run_mortality_theta.sh -------------------------------------------------------------------------------- /mimic3_comparisons/3_ML_models/config.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_comparisons/3_ML_models/config.yaml -------------------------------------------------------------------------------- /mimic3_comparisons/3_ML_models/lib/data.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_comparisons/3_ML_models/lib/data.py -------------------------------------------------------------------------------- /mimic3_comparisons/3_ML_models/lib/evaluate.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_comparisons/3_ML_models/lib/evaluate.py -------------------------------------------------------------------------------- /mimic3_comparisons/3_ML_models/lib/experiment.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_comparisons/3_ML_models/lib/experiment.py -------------------------------------------------------------------------------- /mimic3_comparisons/3_ML_models/lib/models.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_comparisons/3_ML_models/lib/models.py -------------------------------------------------------------------------------- /mimic3_comparisons/3_ML_models/lib/trainer.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_comparisons/3_ML_models/lib/trainer.py -------------------------------------------------------------------------------- /mimic3_comparisons/3_ML_models/run_shallow_dt.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_comparisons/3_ML_models/run_shallow_dt.py -------------------------------------------------------------------------------- /mimic3_comparisons/3_ML_models/run_shallow_dt.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_comparisons/3_ML_models/run_shallow_dt.sh -------------------------------------------------------------------------------- /mimic3_comparisons/3_ML_models/run_shallow_theta.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_comparisons/3_ML_models/run_shallow_theta.py -------------------------------------------------------------------------------- /mimic3_comparisons/3_ML_models/run_shallow_theta.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_comparisons/3_ML_models/run_shallow_theta.sh -------------------------------------------------------------------------------- /mimic3_experiments/1_data_extraction/FIDDLE_input_lengths.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_experiments/1_data_extraction/FIDDLE_input_lengths.ipynb -------------------------------------------------------------------------------- /mimic3_experiments/1_data_extraction/InclusionExclusion.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_experiments/1_data_extraction/InclusionExclusion.ipynb -------------------------------------------------------------------------------- /mimic3_experiments/1_data_extraction/LabelDistributions.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_experiments/1_data_extraction/LabelDistributions.ipynb -------------------------------------------------------------------------------- /mimic3_experiments/1_data_extraction/PopulationSummary.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_experiments/1_data_extraction/PopulationSummary.ipynb -------------------------------------------------------------------------------- /mimic3_experiments/1_data_extraction/config.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_experiments/1_data_extraction/config.py -------------------------------------------------------------------------------- /mimic3_experiments/1_data_extraction/extract_data.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_experiments/1_data_extraction/extract_data.py -------------------------------------------------------------------------------- /mimic3_experiments/1_data_extraction/generate_labels.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_experiments/1_data_extraction/generate_labels.py -------------------------------------------------------------------------------- /mimic3_experiments/1_data_extraction/grouped_variables.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_experiments/1_data_extraction/grouped_variables.yaml -------------------------------------------------------------------------------- /mimic3_experiments/1_data_extraction/prepare_input.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_experiments/1_data_extraction/prepare_input.py -------------------------------------------------------------------------------- /mimic3_experiments/1_data_extraction/resources/IHM_benchmark.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_experiments/1_data_extraction/resources/IHM_benchmark.ipynb -------------------------------------------------------------------------------- /mimic3_experiments/1_data_extraction/resources/all_stays.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_experiments/1_data_extraction/resources/all_stays.csv -------------------------------------------------------------------------------- /mimic3_experiments/1_data_extraction/resources/test_listfile.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_experiments/1_data_extraction/resources/test_listfile.csv -------------------------------------------------------------------------------- /mimic3_experiments/1_data_extraction/resources/train_listfile.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_experiments/1_data_extraction/resources/train_listfile.csv -------------------------------------------------------------------------------- /mimic3_experiments/1_data_extraction/resources/val_listfile.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_experiments/1_data_extraction/resources/val_listfile.csv -------------------------------------------------------------------------------- /mimic3_experiments/1_data_extraction/run_prepare_all.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_experiments/1_data_extraction/run_prepare_all.sh -------------------------------------------------------------------------------- /mimic3_experiments/2_apply_FIDDLE/log,discretize=no/benchmark,outcome=mortality,T=48.0,dt=1.0.err: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_experiments/2_apply_FIDDLE/log,discretize=no/benchmark,outcome=mortality,T=48.0,dt=1.0.err -------------------------------------------------------------------------------- /mimic3_experiments/2_apply_FIDDLE/log,discretize=no/benchmark,outcome=mortality,T=48.0,dt=1.0.out: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_experiments/2_apply_FIDDLE/log,discretize=no/benchmark,outcome=mortality,T=48.0,dt=1.0.out -------------------------------------------------------------------------------- /mimic3_experiments/2_apply_FIDDLE/log,discretize=no/outcome=ARF,T=12.0,dt=1.0.err: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_experiments/2_apply_FIDDLE/log,discretize=no/outcome=ARF,T=12.0,dt=1.0.err -------------------------------------------------------------------------------- /mimic3_experiments/2_apply_FIDDLE/log,discretize=no/outcome=ARF,T=12.0,dt=1.0.out: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_experiments/2_apply_FIDDLE/log,discretize=no/outcome=ARF,T=12.0,dt=1.0.out -------------------------------------------------------------------------------- /mimic3_experiments/2_apply_FIDDLE/log,discretize=no/outcome=ARF,T=4.0,dt=1.0.err: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_experiments/2_apply_FIDDLE/log,discretize=no/outcome=ARF,T=4.0,dt=1.0.err -------------------------------------------------------------------------------- /mimic3_experiments/2_apply_FIDDLE/log,discretize=no/outcome=ARF,T=4.0,dt=1.0.out: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_experiments/2_apply_FIDDLE/log,discretize=no/outcome=ARF,T=4.0,dt=1.0.out -------------------------------------------------------------------------------- /mimic3_experiments/2_apply_FIDDLE/log,discretize=no/outcome=Shock,T=12.0,dt=1.0.err: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_experiments/2_apply_FIDDLE/log,discretize=no/outcome=Shock,T=12.0,dt=1.0.err -------------------------------------------------------------------------------- /mimic3_experiments/2_apply_FIDDLE/log,discretize=no/outcome=Shock,T=12.0,dt=1.0.out: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_experiments/2_apply_FIDDLE/log,discretize=no/outcome=Shock,T=12.0,dt=1.0.out -------------------------------------------------------------------------------- /mimic3_experiments/2_apply_FIDDLE/log,discretize=no/outcome=Shock,T=4.0,dt=1.0.err: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_experiments/2_apply_FIDDLE/log,discretize=no/outcome=Shock,T=4.0,dt=1.0.err -------------------------------------------------------------------------------- /mimic3_experiments/2_apply_FIDDLE/log,discretize=no/outcome=Shock,T=4.0,dt=1.0.out: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_experiments/2_apply_FIDDLE/log,discretize=no/outcome=Shock,T=4.0,dt=1.0.out -------------------------------------------------------------------------------- /mimic3_experiments/2_apply_FIDDLE/log/benchmark,outcome=mortality,T=48.0,dt=1.0.err: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_experiments/2_apply_FIDDLE/log/benchmark,outcome=mortality,T=48.0,dt=1.0.err -------------------------------------------------------------------------------- /mimic3_experiments/2_apply_FIDDLE/log/benchmark,outcome=mortality,T=48.0,dt=1.0.out: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_experiments/2_apply_FIDDLE/log/benchmark,outcome=mortality,T=48.0,dt=1.0.out -------------------------------------------------------------------------------- /mimic3_experiments/2_apply_FIDDLE/log/outcome=ARF,T=12.0,dt=1.0.err: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_experiments/2_apply_FIDDLE/log/outcome=ARF,T=12.0,dt=1.0.err -------------------------------------------------------------------------------- /mimic3_experiments/2_apply_FIDDLE/log/outcome=ARF,T=12.0,dt=1.0.out: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_experiments/2_apply_FIDDLE/log/outcome=ARF,T=12.0,dt=1.0.out -------------------------------------------------------------------------------- /mimic3_experiments/2_apply_FIDDLE/log/outcome=ARF,T=4.0,dt=1.0.err: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_experiments/2_apply_FIDDLE/log/outcome=ARF,T=4.0,dt=1.0.err -------------------------------------------------------------------------------- /mimic3_experiments/2_apply_FIDDLE/log/outcome=ARF,T=4.0,dt=1.0.out: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_experiments/2_apply_FIDDLE/log/outcome=ARF,T=4.0,dt=1.0.out -------------------------------------------------------------------------------- /mimic3_experiments/2_apply_FIDDLE/log/outcome=Shock,T=12.0,dt=1.0.err: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_experiments/2_apply_FIDDLE/log/outcome=Shock,T=12.0,dt=1.0.err -------------------------------------------------------------------------------- /mimic3_experiments/2_apply_FIDDLE/log/outcome=Shock,T=12.0,dt=1.0.out: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_experiments/2_apply_FIDDLE/log/outcome=Shock,T=12.0,dt=1.0.out -------------------------------------------------------------------------------- /mimic3_experiments/2_apply_FIDDLE/log/outcome=Shock,T=4.0,dt=1.0.err: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_experiments/2_apply_FIDDLE/log/outcome=Shock,T=4.0,dt=1.0.err -------------------------------------------------------------------------------- /mimic3_experiments/2_apply_FIDDLE/log/outcome=Shock,T=4.0,dt=1.0.out: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_experiments/2_apply_FIDDLE/log/outcome=Shock,T=4.0,dt=1.0.out -------------------------------------------------------------------------------- /mimic3_experiments/2_apply_FIDDLE/log/outcome=mortality,T=48.0,dt=1.0.err: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_experiments/2_apply_FIDDLE/log/outcome=mortality,T=48.0,dt=1.0.err -------------------------------------------------------------------------------- /mimic3_experiments/2_apply_FIDDLE/log/outcome=mortality,T=48.0,dt=1.0.out: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_experiments/2_apply_FIDDLE/log/outcome=mortality,T=48.0,dt=1.0.out -------------------------------------------------------------------------------- /mimic3_experiments/2_apply_FIDDLE/run_make_all,discretize=no.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_experiments/2_apply_FIDDLE/run_make_all,discretize=no.sh -------------------------------------------------------------------------------- /mimic3_experiments/2_apply_FIDDLE/run_make_all.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_experiments/2_apply_FIDDLE/run_make_all.sh -------------------------------------------------------------------------------- /mimic3_experiments/3_ML_models/DataSummary.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_experiments/3_ML_models/DataSummary.ipynb -------------------------------------------------------------------------------- /mimic3_experiments/3_ML_models/README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_experiments/3_ML_models/README.md -------------------------------------------------------------------------------- /mimic3_experiments/3_ML_models/config.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_experiments/3_ML_models/config.yaml -------------------------------------------------------------------------------- /mimic3_experiments/3_ML_models/lib/data.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_experiments/3_ML_models/lib/data.py -------------------------------------------------------------------------------- /mimic3_experiments/3_ML_models/lib/evaluate.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_experiments/3_ML_models/lib/evaluate.py -------------------------------------------------------------------------------- /mimic3_experiments/3_ML_models/lib/experiment.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_experiments/3_ML_models/lib/experiment.py -------------------------------------------------------------------------------- /mimic3_experiments/3_ML_models/lib/models.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_experiments/3_ML_models/lib/models.py -------------------------------------------------------------------------------- /mimic3_experiments/3_ML_models/lib/trainer.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_experiments/3_ML_models/lib/trainer.py -------------------------------------------------------------------------------- /mimic3_experiments/3_ML_models/run_deep.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_experiments/3_ML_models/run_deep.py -------------------------------------------------------------------------------- /mimic3_experiments/3_ML_models/run_deep_all.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_experiments/3_ML_models/run_deep_all.sh -------------------------------------------------------------------------------- /mimic3_experiments/3_ML_models/run_deep_eval.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_experiments/3_ML_models/run_deep_eval.py -------------------------------------------------------------------------------- /mimic3_experiments/3_ML_models/run_shallow.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_experiments/3_ML_models/run_shallow.py -------------------------------------------------------------------------------- /mimic3_experiments/3_ML_models/run_shallow_all.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_experiments/3_ML_models/run_shallow_all.sh -------------------------------------------------------------------------------- /mimic3_experiments/4_evaluation/CombineFigures.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_experiments/4_evaluation/CombineFigures.ipynb -------------------------------------------------------------------------------- /mimic3_experiments/4_evaluation/Evaluation.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_experiments/4_evaluation/Evaluation.ipynb -------------------------------------------------------------------------------- /mimic3_experiments/4_evaluation/PredictionGap.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_experiments/4_evaluation/PredictionGap.ipynb -------------------------------------------------------------------------------- /mimic3_experiments/4_evaluation/d_items.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_experiments/4_evaluation/d_items.csv -------------------------------------------------------------------------------- /mimic3_experiments/4_evaluation/d_labitems.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_experiments/4_evaluation/d_labitems.csv -------------------------------------------------------------------------------- /mimic3_experiments/5_baseline_NEWS/CalculateNEWS.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_experiments/5_baseline_NEWS/CalculateNEWS.ipynb -------------------------------------------------------------------------------- /mimic3_experiments/5_baseline_NEWS/NEWS_table.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_experiments/5_baseline_NEWS/NEWS_table.jpg -------------------------------------------------------------------------------- /mimic3_experiments/README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_experiments/README.md -------------------------------------------------------------------------------- /mimic3_experiments/config.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLD3/FIDDLE-experiments/HEAD/mimic3_experiments/config.yaml --------------------------------------------------------------------------------