├── .gitignore ├── DataSources.md ├── LICENSE ├── README.md ├── bash_scripts ├── cmnist.sh ├── cxr.sh ├── cxr_subsample.sh ├── eicu.sh ├── eicu_corr_label.sh ├── eicu_corr_noise.sh ├── eicu_subsample.sh └── eicu_vary_lambda.sh ├── clinicaldg ├── __init__.py ├── algorithms.py ├── command_launchers.py ├── cxr │ ├── Augmentations.py │ ├── Constants.py │ ├── __init__.py │ ├── data.py │ ├── models.py │ ├── preprocess │ │ ├── cache_data.py │ │ ├── preprocess.py │ │ └── validate.py │ └── process.py ├── datasets.py ├── eicu │ ├── Augmentations.py │ ├── Constants.py │ ├── __init__.py │ ├── data.py │ ├── data_extraction │ │ ├── __init__.py │ │ ├── data_extraction_mortality.py │ │ └── utils.py │ └── models.py ├── hparams_registry.py ├── lib │ ├── fast_data_loader.py │ └── misc.py ├── networks.py ├── scripts │ ├── download.py │ ├── sweep.py │ └── train.py └── utils.py ├── environment.yml ├── hparams.md ├── notebooks └── agg_results.ipynb └── requirements.txt /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLforHealth/ClinicalDG/HEAD/.gitignore -------------------------------------------------------------------------------- /DataSources.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLforHealth/ClinicalDG/HEAD/DataSources.md -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLforHealth/ClinicalDG/HEAD/LICENSE -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLforHealth/ClinicalDG/HEAD/README.md -------------------------------------------------------------------------------- /bash_scripts/cmnist.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLforHealth/ClinicalDG/HEAD/bash_scripts/cmnist.sh -------------------------------------------------------------------------------- /bash_scripts/cxr.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLforHealth/ClinicalDG/HEAD/bash_scripts/cxr.sh -------------------------------------------------------------------------------- /bash_scripts/cxr_subsample.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLforHealth/ClinicalDG/HEAD/bash_scripts/cxr_subsample.sh -------------------------------------------------------------------------------- /bash_scripts/eicu.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLforHealth/ClinicalDG/HEAD/bash_scripts/eicu.sh -------------------------------------------------------------------------------- /bash_scripts/eicu_corr_label.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLforHealth/ClinicalDG/HEAD/bash_scripts/eicu_corr_label.sh -------------------------------------------------------------------------------- /bash_scripts/eicu_corr_noise.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLforHealth/ClinicalDG/HEAD/bash_scripts/eicu_corr_noise.sh -------------------------------------------------------------------------------- /bash_scripts/eicu_subsample.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLforHealth/ClinicalDG/HEAD/bash_scripts/eicu_subsample.sh -------------------------------------------------------------------------------- /bash_scripts/eicu_vary_lambda.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MLforHealth/ClinicalDG/HEAD/bash_scripts/eicu_vary_lambda.sh -------------------------------------------------------------------------------- /clinicaldg/__init__.py: -------------------------------------------------------------------------------- 1 | # Copyright (c) Facebook, Inc. and its affiliates. 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