├── .github ├── ISSUE_TEMPLATE.md └── PULL_REQUEST_TEMPLATE.md ├── .gitignore ├── CMakeLists.txt ├── INSTALL ├── LICENSE ├── Makefile ├── README.md ├── cmake ├── Functions │ └── MPAS_Functions.cmake ├── Modules │ ├── FindGPTL.cmake │ ├── FindNetCDF.cmake │ ├── FindPIO.cmake │ └── FindPnetCDF.cmake └── PackageConfig.cmake.in ├── docs ├── Makefile ├── conf.py ├── index.rst └── ocean │ ├── design_docs │ └── index.rst │ └── index.rst ├── src ├── Makefile ├── Makefile.in.E3SM ├── core_atmosphere │ ├── .gitignore │ ├── CMakeLists.txt │ ├── Externals.cfg │ ├── Makefile │ ├── Registry.xml │ ├── build_options.mk │ ├── diagnostics │ │ ├── Makefile │ │ ├── README │ │ ├── Registry_cloud.xml │ │ ├── Registry_convective.xml │ │ ├── Registry_diagnostics.xml │ │ ├── Registry_isobaric.xml │ │ ├── Registry_pv.xml │ │ ├── Registry_soundings.xml │ │ ├── Registry_template.xml │ │ ├── mpas_atm_diagnostic_template.F │ │ ├── mpas_atm_diagnostics_manager.F │ │ ├── mpas_atm_diagnostics_utils.F │ │ ├── mpas_cloud_diagnostics.F │ │ ├── mpas_convective_diagnostics.F │ │ ├── mpas_isobaric_diagnostics.F │ │ ├── mpas_pv_diagnostics.F │ │ └── mpas_soundings.F │ ├── dynamics │ │ ├── .gitignore │ │ ├── Makefile │ │ ├── mpas_atm_boundaries.F │ │ ├── mpas_atm_iau.F │ │ └── mpas_atm_time_integration.F │ ├── mpas_atm_core.F │ ├── mpas_atm_core_interface.F │ ├── mpas_atm_dimensions.F │ ├── mpas_atm_halos.F │ ├── mpas_atm_threading.F │ ├── physics │ │ ├── .gitignore │ │ ├── Makefile │ │ ├── Registry_noahmp.xml │ │ ├── ccpp_kind_types.F │ │ ├── checkout_data_files.sh │ │ ├── mpas_atmphys_camrad_init.F │ │ ├── mpas_atmphys_constants.F │ │ ├── mpas_atmphys_control.F │ │ ├── mpas_atmphys_date_time.F │ │ ├── mpas_atmphys_driver.F │ │ ├── mpas_atmphys_driver_cloudiness.F │ │ ├── mpas_atmphys_driver_convection.F │ │ ├── mpas_atmphys_driver_gwdo.F │ │ ├── mpas_atmphys_driver_lsm.F │ │ ├── mpas_atmphys_driver_lsm_noahmp.F │ │ ├── mpas_atmphys_driver_microphysics.F │ │ ├── mpas_atmphys_driver_oml.F │ │ ├── mpas_atmphys_driver_pbl.F │ │ ├── mpas_atmphys_driver_radiation_lw.F │ │ ├── mpas_atmphys_driver_radiation_sw.F │ │ ├── mpas_atmphys_driver_seaice.F │ │ ├── mpas_atmphys_driver_sfclayer.F │ │ ├── mpas_atmphys_finalize.F │ │ ├── mpas_atmphys_functions.F │ │ ├── mpas_atmphys_init.F │ │ ├── mpas_atmphys_init_microphysics.F │ │ ├── mpas_atmphys_initialize_real.F │ │ ├── mpas_atmphys_interface.F │ │ ├── mpas_atmphys_landuse.F │ │ ├── mpas_atmphys_lsm_noahinit.F │ │ ├── mpas_atmphys_lsm_noahmpfinalize.F │ │ ├── mpas_atmphys_lsm_noahmpinit.F │ │ ├── mpas_atmphys_lsm_shared.F │ │ ├── mpas_atmphys_manager.F │ │ ├── mpas_atmphys_o3climatology.F │ │ ├── mpas_atmphys_packages.F │ │ ├── mpas_atmphys_rrtmg_lwinit.F │ │ ├── mpas_atmphys_rrtmg_swinit.F │ │ ├── mpas_atmphys_sfc_diagnostics.F │ │ ├── mpas_atmphys_todynamics.F │ │ ├── mpas_atmphys_update.F │ │ ├── mpas_atmphys_update_surface.F │ │ ├── mpas_atmphys_utilities.F │ │ ├── mpas_atmphys_vars.F │ │ ├── physics_noahmp │ │ │ ├── LICENSE.txt │ │ │ ├── README.md │ │ │ ├── RELEASE_NOTES.md │ │ │ ├── docs │ │ │ │ ├── NoahMP_refactored_variable_name_glossary_Feb2023.xlsx │ │ │ │ └── NoahMP_v5_technote.pdf │ │ │ ├── drivers │ │ │ │ └── mpas │ │ │ │ │ ├── BiochemVarInTransferMod.F90 │ │ │ │ │ ├── BiochemVarOutTransferMod.F90 │ │ │ │ │ ├── ConfigVarInTransferMod.F90 │ │ │ │ │ ├── ConfigVarOutTransferMod.F90 │ │ │ │ │ ├── EnergyVarInTransferMod.F90 │ │ │ │ │ ├── EnergyVarOutTransferMod.F90 │ │ │ │ │ ├── ForcingVarInTransferMod.F90 │ │ │ │ │ ├── ForcingVarOutTransferMod.F90 │ │ │ │ │ ├── Makefile │ │ │ │ │ ├── NoahmpDriverMainMod.F90 │ │ │ │ │ ├── NoahmpGroundwaterInitMod.F90 │ │ │ │ │ ├── NoahmpIOVarFinalizeMod.F90 │ │ │ │ │ ├── NoahmpIOVarInitMod.F90 │ │ │ │ │ ├── NoahmpIOVarType.F90 │ │ │ │ │ ├── NoahmpInitMainMod.F90 │ │ │ │ │ ├── NoahmpReadNamelistMod.F90 │ │ │ │ │ ├── NoahmpReadTableMod.F90 │ │ │ │ │ ├── NoahmpSnowInitMod.F90 │ │ │ │ │ ├── PedoTransferSR2006Mod.F90 │ │ │ │ │ ├── WaterVarInTransferMod.F90 │ │ │ │ │ └── WaterVarOutTransferMod.F90 │ │ │ ├── parameters │ │ │ │ └── NoahmpTable.TBL │ │ │ ├── src │ │ │ │ ├── AtmosForcingMod.F90 │ │ │ │ ├── BalanceErrorCheckGlacierMod.F90 │ │ │ │ ├── BalanceErrorCheckMod.F90 │ │ │ │ ├── BiochemCropMainMod.F90 │ │ │ │ ├── BiochemNatureVegMainMod.F90 │ │ │ │ ├── BiochemVarInitMod.F90 │ │ │ │ ├── BiochemVarType.F90 │ │ │ │ ├── CanopyHydrologyMod.F90 │ │ │ │ ├── CanopyRadiationTwoStreamMod.F90 │ │ │ │ ├── CanopyWaterInterceptMod.F90 │ │ │ │ ├── CarbonFluxCropMod.F90 │ │ │ │ ├── CarbonFluxNatureVegMod.F90 │ │ │ │ ├── ConfigVarInitMod.F90 │ │ │ │ ├── ConfigVarType.F90 │ │ │ │ ├── ConstantDefineMod.F90 │ │ │ │ ├── CropGrowDegreeDayMod.F90 │ │ │ │ ├── CropPhotosynthesisMod.F90 │ │ │ │ ├── EnergyMainGlacierMod.F90 │ │ │ │ ├── EnergyMainMod.F90 │ │ │ │ ├── EnergyVarInitMod.F90 │ │ │ │ ├── EnergyVarType.F90 │ │ │ │ ├── ForcingVarInitMod.F90 │ │ │ │ ├── ForcingVarType.F90 │ │ │ │ ├── GeneralInitGlacierMod.F90 │ │ │ │ ├── GeneralInitMod.F90 │ │ │ │ ├── GlacierIceThermalPropertyMod.F90 │ │ │ │ ├── GlacierPhaseChangeMod.F90 │ │ │ │ ├── GlacierTemperatureMainMod.F90 │ │ │ │ ├── GlacierTemperatureSolverMod.F90 │ │ │ │ ├── GlacierThermalDiffusionMod.F90 │ │ │ │ ├── GroundAlbedoGlacierMod.F90 │ │ │ │ ├── GroundAlbedoMod.F90 │ │ │ │ ├── GroundRoughnessPropertyGlacierMod.F90 │ │ │ │ ├── GroundRoughnessPropertyMod.F90 │ │ │ │ ├── GroundThermalPropertyGlacierMod.F90 │ │ │ │ ├── GroundThermalPropertyMod.F90 │ │ │ │ ├── GroundWaterMmfMod.F90 │ │ │ │ ├── GroundWaterTopModelMod.F90 │ │ │ │ ├── HumiditySaturationMod.F90 │ │ │ │ ├── IrrigationFloodMod.F90 │ │ │ │ ├── IrrigationInfilPhilipMod.F90 │ │ │ │ ├── IrrigationMicroMod.F90 │ │ │ │ ├── IrrigationPrepareMod.F90 │ │ │ │ ├── IrrigationSprinklerMod.F90 │ │ │ │ ├── IrrigationTriggerMod.F90 │ │ │ │ ├── Makefile │ │ │ │ ├── MatrixSolverTriDiagonalMod.F90 │ │ │ │ ├── NoahmpMainGlacierMod.F90 │ │ │ │ ├── NoahmpMainMod.F90 │ │ │ │ ├── NoahmpVarType.F90 │ │ │ │ ├── PhenologyMainMod.F90 │ │ │ │ ├── PrecipitationHeatAdvectGlacierMod.F90 │ │ │ │ ├── PrecipitationHeatAdvectMod.F90 │ │ │ │ ├── PsychrometricVariableGlacierMod.F90 │ │ │ │ ├── PsychrometricVariableMod.F90 │ │ │ │ ├── ResistanceAboveCanopyChen97Mod.F90 │ │ │ │ ├── ResistanceAboveCanopyMostMod.F90 │ │ │ │ ├── ResistanceBareGroundChen97Mod.F90 │ │ │ │ ├── ResistanceBareGroundMostMod.F90 │ │ │ │ ├── ResistanceCanopyStomataBallBerryMod.F90 │ │ │ │ ├── ResistanceCanopyStomataJarvisMod.F90 │ │ │ │ ├── ResistanceGroundEvaporationGlacierMod.F90 │ │ │ │ ├── ResistanceGroundEvaporationMod.F90 │ │ │ │ ├── ResistanceLeafToGroundMod.F90 │ │ │ │ ├── RunoffSubSurfaceDrainageMod.F90 │ │ │ │ ├── RunoffSubSurfaceEquiWaterTableMod.F90 │ │ │ │ ├── RunoffSubSurfaceGroundWaterMod.F90 │ │ │ │ ├── RunoffSubSurfaceShallowMmfMod.F90 │ │ │ │ ├── RunoffSurfaceBatsMod.F90 │ │ │ │ ├── RunoffSurfaceDynamicVicMod.F90 │ │ │ │ ├── RunoffSurfaceExcessDynamicVicMod.F90 │ │ │ │ ├── RunoffSurfaceFreeDrainMod.F90 │ │ │ │ ├── RunoffSurfaceTopModelEquiMod.F90 │ │ │ │ ├── RunoffSurfaceTopModelGrdMod.F90 │ │ │ │ ├── RunoffSurfaceTopModelMmfMod.F90 │ │ │ │ ├── RunoffSurfaceVicMod.F90 │ │ │ │ ├── RunoffSurfaceXinAnJiangMod.F90 │ │ │ │ ├── ShallowWaterTableMmfMod.F90 │ │ │ │ ├── SnowAgingBatsMod.F90 │ │ │ │ ├── SnowAlbedoBatsMod.F90 │ │ │ │ ├── SnowAlbedoClassMod.F90 │ │ │ │ ├── SnowCoverGlacierMod.F90 │ │ │ │ ├── SnowCoverGroundNiu07Mod.F90 │ │ │ │ ├── SnowLayerCombineMod.F90 │ │ │ │ ├── SnowLayerDivideMod.F90 │ │ │ │ ├── SnowLayerWaterComboMod.F90 │ │ │ │ ├── SnowThermalPropertyMod.F90 │ │ │ │ ├── SnowWaterMainGlacierMod.F90 │ │ │ │ ├── SnowWaterMainMod.F90 │ │ │ │ ├── SnowfallBelowCanopyMod.F90 │ │ │ │ ├── SnowpackCompactionMod.F90 │ │ │ │ ├── SnowpackHydrologyGlacierMod.F90 │ │ │ │ ├── SnowpackHydrologyMod.F90 │ │ │ │ ├── SoilHydraulicPropertyMod.F90 │ │ │ │ ├── SoilMoistureSolverMod.F90 │ │ │ │ ├── SoilSnowTemperatureMainMod.F90 │ │ │ │ ├── SoilSnowTemperatureSolverMod.F90 │ │ │ │ ├── SoilSnowThermalDiffusionMod.F90 │ │ │ │ ├── SoilSnowWaterPhaseChangeMod.F90 │ │ │ │ ├── SoilThermalPropertyMod.F90 │ │ │ │ ├── SoilWaterDiffusionRichardsMod.F90 │ │ │ │ ├── SoilWaterInfilGreenAmptMod.F90 │ │ │ │ ├── SoilWaterInfilPhilipMod.F90 │ │ │ │ ├── SoilWaterInfilSmithParlangeMod.F90 │ │ │ │ ├── SoilWaterMainMod.F90 │ │ │ │ ├── SoilWaterSupercoolKoren99Mod.F90 │ │ │ │ ├── SoilWaterSupercoolNiu06Mod.F90 │ │ │ │ ├── SoilWaterTranspirationMod.F90 │ │ │ │ ├── SurfaceAlbedoGlacierMod.F90 │ │ │ │ ├── SurfaceAlbedoMod.F90 │ │ │ │ ├── SurfaceEmissivityGlacierMod.F90 │ │ │ │ ├── SurfaceEmissivityMod.F90 │ │ │ │ ├── SurfaceEnergyFluxBareGroundMod.F90 │ │ │ │ ├── SurfaceEnergyFluxGlacierMod.F90 │ │ │ │ ├── SurfaceEnergyFluxVegetatedMod.F90 │ │ │ │ ├── SurfaceRadiationGlacierMod.F90 │ │ │ │ ├── SurfaceRadiationMod.F90 │ │ │ │ ├── TileDrainageEquiDepthMod.F90 │ │ │ │ ├── TileDrainageHooghoudtMod.F90 │ │ │ │ ├── TileDrainageSimpleMod.F90 │ │ │ │ ├── VaporPressureSaturationMod.F90 │ │ │ │ ├── WaterMainGlacierMod.F90 │ │ │ │ ├── WaterMainMod.F90 │ │ │ │ ├── WaterTableDepthSearchMod.F90 │ │ │ │ ├── WaterTableEquilibriumMod.F90 │ │ │ │ ├── WaterVarInitMod.F90 │ │ │ │ └── WaterVarType.F90 │ │ │ └── utility │ │ │ │ ├── CheckNanMod.F90 │ │ │ │ ├── ErrorHandleMod.F90 │ │ │ │ ├── Machine.F90 │ │ │ │ └── Makefile │ │ └── physics_wrf │ │ │ ├── LICENSE │ │ │ ├── Makefile │ │ │ ├── bl_mynn_post.F │ │ │ ├── bl_mynn_pre.F │ │ │ ├── cu_ntiedtke_post.F │ │ │ ├── cu_ntiedtke_pre.F │ │ │ ├── libmassv.F │ │ │ ├── module_bep_bem_helper.F │ │ │ ├── module_bl_gwdo.F │ │ │ ├── module_bl_mynn.F │ │ │ ├── module_bl_ugwp_gwdo.F │ │ │ ├── module_bl_ysu.F │ │ │ ├── module_cam_error_function.F │ │ │ ├── module_cam_shr_kind_mod.F │ │ │ ├── module_cam_support.F │ │ │ ├── module_cu_gf.mpas.F │ │ │ ├── module_cu_kfeta.F │ │ │ ├── module_cu_ntiedtke.F │ │ │ ├── module_cu_tiedtke.F │ │ │ ├── module_mp_kessler.F │ │ │ ├── module_mp_radar.F │ │ │ ├── module_mp_thompson.F │ │ │ ├── module_mp_thompson_aerosols.F │ │ │ ├── module_mp_thompson_cldfra3.F │ │ │ ├── module_mp_wsm6.F │ │ │ ├── module_ra_cam.F │ │ │ ├── module_ra_cam_support.F │ │ │ ├── module_ra_rrtmg_lw.F │ │ │ ├── module_ra_rrtmg_sw.F │ │ │ ├── module_ra_rrtmg_sw_aerosols.F │ │ │ ├── module_ra_rrtmg_vinterp.F │ │ │ ├── module_sf_bem.F │ │ │ ├── module_sf_bep.F │ │ │ ├── module_sf_bep_bem.F │ │ │ ├── module_sf_mynn.F │ │ │ ├── module_sf_noah_seaice.F │ │ │ ├── module_sf_noah_seaice_drv.F │ │ │ ├── module_sf_noahdrv.F │ │ │ ├── module_sf_noahlsm.F │ │ │ ├── module_sf_noahlsm_glacial_only.F │ │ │ ├── module_sf_oml.F │ │ │ ├── module_sf_sfcdiags.F │ │ │ ├── module_sf_sfclay.F │ │ │ ├── module_sf_sfclayrev.F │ │ │ ├── module_sf_urban.F │ │ │ ├── sf_mynn_pre.F │ │ │ └── sf_sfclayrev_pre.F │ ├── tools │ │ └── manage_externals │ │ │ ├── .gitignore │ │ │ ├── LICENSE.txt │ │ │ ├── README.md │ │ │ ├── README_FIRST │ │ │ ├── checkout_externals │ │ │ ├── manic │ │ │ ├── __init__.py │ │ │ ├── checkout.py │ │ │ ├── externals_description.py │ │ │ ├── externals_status.py │ │ │ ├── global_constants.py │ │ │ ├── repository.py │ │ │ ├── repository_factory.py │ │ │ ├── repository_git.py │ │ │ ├── repository_svn.py │ │ │ ├── sourcetree.py │ │ │ └── utils.py │ │ │ └── version.txt │ └── utils │ │ ├── Makefile │ │ ├── atmphys_build_tables_thompson.F │ │ └── build_tables.F ├── core_init_atmosphere │ ├── CMakeLists.txt │ ├── Makefile │ ├── Registry.xml │ ├── build_options.mk │ ├── mpas_atm_advection.F │ ├── mpas_atmphys_constants.F │ ├── mpas_atmphys_date_time.F │ ├── mpas_atmphys_functions.F │ ├── mpas_atmphys_initialize_real.F │ ├── mpas_atmphys_utilities.F │ ├── mpas_geotile_manager.F │ ├── mpas_gsl_oro_data_lg_scale.F │ ├── mpas_gsl_oro_data_sm_scale.F │ ├── mpas_init_atm_bitarray.F │ ├── mpas_init_atm_cases.F │ ├── mpas_init_atm_core.F │ ├── mpas_init_atm_core_interface.F │ ├── mpas_init_atm_gwd.F │ ├── mpas_init_atm_gwd_gsl.F │ ├── mpas_init_atm_hinterp.F │ ├── mpas_init_atm_llxy.F │ ├── mpas_init_atm_queue.F │ ├── mpas_init_atm_read_met.F │ ├── mpas_init_atm_static.F │ ├── mpas_init_atm_surface.F │ ├── mpas_init_atm_thompson_aerosols.F │ ├── mpas_init_atm_vinterp.F │ ├── mpas_kd_tree.F │ ├── mpas_parse_geoindex.F │ ├── mpas_stack.F │ └── read_geogrid.c ├── core_landice │ ├── .gitignore │ ├── Makefile │ ├── Registry.xml │ ├── Registry_subglacial_hydro.xml │ ├── analysis_members │ │ ├── Makefile │ │ ├── Registry_TEMPLATE.xml │ │ ├── Registry_analysis_members.xml │ │ ├── Registry_global_stats.xml │ │ ├── Registry_regional_stats.xml │ │ ├── mpas_li_TEMPLATE.F │ │ ├── mpas_li_analysis_driver.F │ │ ├── mpas_li_global_stats.F │ │ └── mpas_li_regional_stats.F │ ├── build_options.mk │ ├── external_albany_version │ ├── external_trilinos_version │ ├── mode_forward │ │ ├── Interface_velocity_solver.cpp │ │ ├── Interface_velocity_solver.hpp │ │ ├── Makefile │ │ ├── mpas_li_advection.F │ │ ├── mpas_li_calving.F │ │ ├── mpas_li_core.F │ │ ├── mpas_li_core_interface.F │ │ ├── mpas_li_diagnostic_vars.F │ │ ├── mpas_li_sia.F │ │ ├── mpas_li_statistics.F │ │ ├── mpas_li_subglacial_hydro.F │ │ ├── mpas_li_thermal.F │ │ ├── mpas_li_time_integration.F │ │ ├── mpas_li_time_integration_fe.F │ │ ├── mpas_li_velocity.F │ │ ├── mpas_li_velocity_external.F │ │ └── mpas_li_velocity_simple.F │ └── shared │ │ ├── Makefile │ │ ├── mpas_li_constants.F │ │ ├── mpas_li_mask.F │ │ └── mpas_li_setup.F ├── core_ocean │ ├── .gitignore │ ├── Makefile │ ├── Registry.xml │ ├── analysis_members │ │ ├── Makefile │ │ ├── Registry_TEMPLATE.xml │ │ ├── Registry_analysis_members.xml │ │ ├── Registry_debug_diagnostics.xml │ │ ├── Registry_eddy_product_variables.xml │ │ ├── Registry_eliassen_palm.xml │ │ ├── Registry_global_stats.xml │ │ ├── Registry_high_frequency_output.xml │ │ ├── Registry_lagrangian_particle_tracking.xml │ │ ├── Registry_layer_volume_weighted_averages.xml │ │ ├── Registry_meridional_heat_transport.xml │ │ ├── Registry_mixed_layer_depths.xml │ │ ├── Registry_moc_streamfunction.xml │ │ ├── Registry_okubo_weiss.xml │ │ ├── Registry_pointwise_stats.xml │ │ ├── Registry_regional_stats.xml │ │ ├── Registry_regional_stats_custom.xml │ │ ├── Registry_regional_stats_daily.xml │ │ ├── Registry_regional_stats_monthly.xml │ │ ├── Registry_regional_stats_weekly.xml │ │ ├── Registry_rpn_calculator.xml │ │ ├── Registry_surface_area_weighted_averages.xml │ │ ├── Registry_test_compute_interval.xml │ │ ├── Registry_time_filters.xml │ │ ├── Registry_time_series_stats.xml │ │ ├── Registry_time_series_stats_climatology.xml │ │ ├── Registry_time_series_stats_custom.xml │ │ ├── Registry_time_series_stats_daily.xml │ │ ├── Registry_time_series_stats_monthly.xml │ │ ├── Registry_transect_transport.xml │ │ ├── Registry_water_mass_census.xml │ │ ├── Registry_zonal_mean.xml │ │ ├── mpas_ocn_TEMPLATE.F │ │ ├── mpas_ocn_analysis_driver.F │ │ ├── mpas_ocn_debug_diagnostics.F │ │ ├── mpas_ocn_eddy_product_variables.F │ │ ├── mpas_ocn_eliassen_palm.F │ │ ├── mpas_ocn_global_stats.F │ │ ├── mpas_ocn_high_frequency_output.F │ │ ├── mpas_ocn_lagrangian_particle_tracking.F │ │ ├── mpas_ocn_lagrangian_particle_tracking_interpolations.F │ │ ├── mpas_ocn_lagrangian_particle_tracking_reset.F │ │ ├── mpas_ocn_layer_volume_weighted_averages.F │ │ ├── mpas_ocn_meridional_heat_transport.F │ │ ├── mpas_ocn_mixed_layer_depths.F │ │ ├── mpas_ocn_moc_streamfunction.F │ │ ├── mpas_ocn_okubo_weiss.F │ │ ├── mpas_ocn_okubo_weiss_eigenvalues.c │ │ ├── mpas_ocn_particle_list.F │ │ ├── mpas_ocn_pointwise_stats.F │ │ ├── mpas_ocn_regional_stats.F │ │ ├── mpas_ocn_rpn_calculator.F │ │ ├── mpas_ocn_surface_area_weighted_averages.F │ │ ├── mpas_ocn_test_compute_interval.F │ │ ├── mpas_ocn_time_filters.F │ │ ├── mpas_ocn_time_series_stats.F │ │ ├── mpas_ocn_transect_transport.F │ │ ├── mpas_ocn_water_mass_census.F │ │ ├── mpas_ocn_zonal_mean.F │ │ ├── regional_stats_inc │ │ │ ├── README.md │ │ │ ├── regional_field_1d.F │ │ │ ├── regional_field_1d_1.inc │ │ │ ├── regional_field_1d_2.inc │ │ │ ├── regional_field_nd.F │ │ │ ├── regional_field_nd_1.inc │ │ │ ├── regional_field_nd_2.inc │ │ │ ├── regional_field_nd_3.inc │ │ │ ├── regional_op_avg.F │ │ │ ├── regional_op_avg1d.F │ │ │ ├── regional_op_avg1d_1.inc │ │ │ ├── regional_op_avg1d_2.inc │ │ │ ├── regional_op_avg1d_3.inc │ │ │ ├── regional_op_avg_1.inc │ │ │ ├── regional_op_avg_2.inc │ │ │ ├── regional_op_avg_3.inc │ │ │ ├── regional_op_max.F │ │ │ ├── regional_op_max1d.F │ │ │ ├── regional_op_max1d_1.inc │ │ │ ├── regional_op_max1d_2.inc │ │ │ ├── regional_op_max_1.inc │ │ │ ├── regional_op_max_2.inc │ │ │ ├── regional_op_min.F │ │ │ ├── regional_op_min1d.F │ │ │ ├── regional_op_min1d_1.inc │ │ │ ├── regional_op_min1d_2.inc │ │ │ ├── regional_op_min_1.inc │ │ │ ├── regional_op_min_2.inc │ │ │ ├── regional_op_start.F │ │ │ ├── regional_op_start_1.inc │ │ │ ├── regional_op_start_2.inc │ │ │ ├── regional_op_start_3.inc │ │ │ ├── regional_op_sumsos.F │ │ │ ├── regional_op_sumsos1d.F │ │ │ ├── regional_op_sumsos1d_1.inc │ │ │ ├── regional_op_sumsos1d_2.inc │ │ │ ├── regional_op_sumsos1d_3.inc │ │ │ ├── regional_op_sumsos_1.inc │ │ │ ├── regional_op_sumsos_2.inc │ │ │ ├── regional_op_sumsos_3.inc │ │ │ ├── regional_opvert_avg.F │ │ │ ├── regional_opvert_avg_1.inc │ │ │ ├── regional_opvert_avg_2.inc │ │ │ ├── regional_opvert_avg_3.inc │ │ │ ├── regional_opvert_avg_4.inc │ │ │ ├── regional_opvert_max.F │ │ │ ├── regional_opvert_max_1.inc │ │ │ ├── regional_opvert_max_2.inc │ │ │ ├── regional_opvert_min.F │ │ │ ├── regional_opvert_min_1.inc │ │ │ ├── regional_opvert_min_2.inc │ │ │ ├── regional_opvert_start.F │ │ │ ├── regional_opvert_start_1.inc │ │ │ ├── regional_opvert_start_2.inc │ │ │ ├── regional_opvert_start_3.inc │ │ │ ├── regional_opvert_sumsos.F │ │ │ ├── regional_opvert_sumsos_1.inc │ │ │ ├── regional_opvert_sumsos_2.inc │ │ │ └── regional_opvert_sumsos_3.inc │ │ ├── rpn_calc_inc │ │ │ ├── binary_op_0d_0d.F │ │ │ ├── binary_op_0d_0d_1.inc │ │ │ ├── binary_op_0d_0d_2.inc │ │ │ ├── binary_op_0d_1d.F │ │ │ ├── binary_op_0d_1d_1.inc │ │ │ ├── binary_op_0d_1d_2.inc │ │ │ ├── binary_op_0d_2d.F │ │ │ ├── binary_op_0d_2d_1.inc │ │ │ ├── binary_op_0d_2d_2.inc │ │ │ ├── binary_op_1d_0d.F │ │ │ ├── binary_op_1d_0d_1.inc │ │ │ ├── binary_op_1d_0d_2.inc │ │ │ ├── binary_op_1d_1d_diff.F │ │ │ ├── binary_op_1d_1d_diff_1.inc │ │ │ ├── binary_op_1d_1d_diff_2.inc │ │ │ ├── binary_op_1d_1d_same.F │ │ │ ├── binary_op_1d_1d_same_1.inc │ │ │ ├── binary_op_1d_1d_same_2.inc │ │ │ ├── binary_op_1d_2d_first.F │ │ │ ├── binary_op_1d_2d_first_1.inc │ │ │ ├── binary_op_1d_2d_first_2.inc │ │ │ ├── binary_op_1d_2d_second.F │ │ │ ├── binary_op_1d_2d_second_1.inc │ │ │ ├── binary_op_1d_2d_second_2.inc │ │ │ ├── binary_op_2d_0d.F │ │ │ ├── binary_op_2d_0d_1.inc │ │ │ ├── binary_op_2d_0d_2.inc │ │ │ ├── binary_op_2d_1d_first.F │ │ │ ├── binary_op_2d_1d_first_1.inc │ │ │ ├── binary_op_2d_1d_first_2.inc │ │ │ ├── binary_op_2d_1d_second.F │ │ │ ├── binary_op_2d_1d_second_1.inc │ │ │ ├── binary_op_2d_1d_second_2.inc │ │ │ ├── binary_op_2d_2d.F │ │ │ ├── binary_op_2d_2d_1.inc │ │ │ ├── binary_op_2d_2d_2.inc │ │ │ ├── binary_op_dispatch.F │ │ │ ├── binary_op_dispatch_0d_0d.inc │ │ │ ├── binary_op_dispatch_0d_1d.inc │ │ │ ├── binary_op_dispatch_0d_2d.inc │ │ │ ├── binary_op_dispatch_1d_0d.inc │ │ │ ├── binary_op_dispatch_1d_1d_diff.inc │ │ │ ├── binary_op_dispatch_1d_1d_same.inc │ │ │ ├── binary_op_dispatch_1d_2d_first.inc │ │ │ ├── binary_op_dispatch_1d_2d_second.inc │ │ │ ├── binary_op_dispatch_2d_0d.inc │ │ │ ├── binary_op_dispatch_2d_1d_first.inc │ │ │ ├── binary_op_dispatch_2d_1d_second.inc │ │ │ ├── binary_op_dispatch_2d_2d.inc │ │ │ ├── binary_op_dispatch_end.inc │ │ │ ├── binary_op_dispatch_start.inc │ │ │ ├── field_0d_from_1d.F │ │ │ ├── field_0d_from_1d.inc │ │ │ ├── field_1d_from_2d.F │ │ │ ├── field_1d_from_2d.inc │ │ │ ├── field_2d_from_1ds.F │ │ │ ├── field_2d_from_1ds.inc │ │ │ ├── reduce_op_1d.F │ │ │ ├── reduce_op_1d_1.inc │ │ │ ├── reduce_op_1d_2.inc │ │ │ ├── reduce_op_1d_3.inc │ │ │ ├── reduce_op_2d.F │ │ │ ├── reduce_op_2d_1.inc │ │ │ ├── reduce_op_2d_2.inc │ │ │ ├── reduce_op_2d_3.inc │ │ │ ├── reduce_op_dispatch.F │ │ │ ├── reduce_op_dispatch_1d.inc │ │ │ ├── reduce_op_dispatch_2d.inc │ │ │ ├── reduce_op_dispatch_end.inc │ │ │ └── reduce_op_dispatch_start.inc │ │ └── time_series_inc │ │ │ ├── copy_field.F │ │ │ ├── copy_field_1.inc │ │ │ ├── copy_field_2.inc │ │ │ ├── operate.F │ │ │ ├── operate_1.inc │ │ │ ├── operate_2.inc │ │ │ ├── operate_2_sos.inc │ │ │ └── operate_3.inc │ ├── build_options.mk │ ├── driver │ │ ├── Makefile │ │ ├── mpas_ocn_core.F │ │ └── mpas_ocn_core_interface.F │ ├── get_BGC.sh │ ├── get_cvmix.sh │ ├── mode_analysis │ │ ├── Makefile │ │ └── mpas_ocn_analysis_mode.F │ ├── mode_forward │ │ ├── Makefile │ │ ├── mpas_ocn_forward_mode.F │ │ ├── mpas_ocn_time_integration.F │ │ ├── mpas_ocn_time_integration_rk4.F │ │ └── mpas_ocn_time_integration_split.F │ ├── mode_init │ │ ├── Makefile │ │ ├── Registry.xml │ │ ├── Registry_TEMPLATE.xml │ │ ├── Registry_baroclinic_channel.xml │ │ ├── Registry_cvmix_WSwSBF.xml │ │ ├── Registry_ecosys_column.xml │ │ ├── Registry_global_ocean.xml │ │ ├── Registry_internal_waves.xml │ │ ├── Registry_iso.xml │ │ ├── Registry_isomip.xml │ │ ├── Registry_isomip_plus.xml │ │ ├── Registry_lock_exchange.xml │ │ ├── Registry_overflow.xml │ │ ├── Registry_periodic_planar.xml │ │ ├── Registry_sea_mount.xml │ │ ├── Registry_soma.xml │ │ ├── Registry_sub_ice_shelf_2D.xml │ │ ├── Registry_ziso.xml │ │ ├── mpas_ocn_init_TEMPLATE.F │ │ ├── mpas_ocn_init_baroclinic_channel.F │ │ ├── mpas_ocn_init_cell_markers.F │ │ ├── mpas_ocn_init_cvmix_WSwSBF.F │ │ ├── mpas_ocn_init_ecosys_column.F │ │ ├── mpas_ocn_init_global_ocean.F │ │ ├── mpas_ocn_init_internal_waves.F │ │ ├── mpas_ocn_init_interpolation.F │ │ ├── mpas_ocn_init_iso.F │ │ ├── mpas_ocn_init_isomip.F │ │ ├── mpas_ocn_init_isomip_plus.F │ │ ├── mpas_ocn_init_lock_exchange.F │ │ ├── mpas_ocn_init_mode.F │ │ ├── mpas_ocn_init_overflow.F │ │ ├── mpas_ocn_init_periodic_planar.F │ │ ├── mpas_ocn_init_sea_mount.F │ │ ├── mpas_ocn_init_soma.F │ │ ├── mpas_ocn_init_spherical_utils.F │ │ ├── mpas_ocn_init_ssh_and_landIcePressure.F │ │ ├── mpas_ocn_init_sub_ice_shelf_2D.F │ │ ├── mpas_ocn_init_vertical_grids.F │ │ └── mpas_ocn_init_ziso.F │ ├── shared │ │ ├── Makefile │ │ ├── mpas_ocn_constants.F │ │ ├── mpas_ocn_diagnostics.F │ │ ├── mpas_ocn_diagnostics_routines.F │ │ ├── mpas_ocn_effective_density_in_land_ice.F │ │ ├── mpas_ocn_equation_of_state.F │ │ ├── mpas_ocn_equation_of_state_jm.F │ │ ├── mpas_ocn_equation_of_state_linear.F │ │ ├── mpas_ocn_forcing.F │ │ ├── mpas_ocn_framework_forcing.F │ │ ├── mpas_ocn_frazil_forcing.F │ │ ├── mpas_ocn_gm.F │ │ ├── mpas_ocn_high_freq_thickness_hmix_del2.F │ │ ├── mpas_ocn_init_routines.F │ │ ├── mpas_ocn_sea_ice.F │ │ ├── mpas_ocn_surface_bulk_forcing.F │ │ ├── mpas_ocn_surface_land_ice_fluxes.F │ │ ├── mpas_ocn_tendency.F │ │ ├── mpas_ocn_test.F │ │ ├── mpas_ocn_thick_ale.F │ │ ├── mpas_ocn_thick_hadv.F │ │ ├── mpas_ocn_thick_surface_flux.F │ │ ├── mpas_ocn_thick_vadv.F │ │ ├── mpas_ocn_time_average_coupled.F │ │ ├── mpas_ocn_tracer_DMS.F │ │ ├── mpas_ocn_tracer_MacroMolecules.F │ │ ├── mpas_ocn_tracer_TTD.F │ │ ├── mpas_ocn_tracer_advection.F │ │ ├── mpas_ocn_tracer_advection_mono.F │ │ ├── mpas_ocn_tracer_advection_std.F │ │ ├── mpas_ocn_tracer_ecosys.F │ │ ├── mpas_ocn_tracer_exponential_decay.F │ │ ├── mpas_ocn_tracer_hmix.F │ │ ├── mpas_ocn_tracer_hmix_del2.F │ │ ├── mpas_ocn_tracer_hmix_del4.F │ │ ├── mpas_ocn_tracer_hmix_redi.F │ │ ├── mpas_ocn_tracer_ideal_age.F │ │ ├── mpas_ocn_tracer_interior_restoring.F │ │ ├── mpas_ocn_tracer_nonlocalflux.F │ │ ├── mpas_ocn_tracer_short_wave_absorption.F │ │ ├── mpas_ocn_tracer_short_wave_absorption_jerlov.F │ │ ├── mpas_ocn_tracer_short_wave_absorption_variable.F │ │ ├── mpas_ocn_tracer_surface_flux_to_tend.F │ │ ├── mpas_ocn_tracer_surface_restoring.F │ │ ├── mpas_ocn_vel_coriolis.F │ │ ├── mpas_ocn_vel_forcing.F │ │ ├── mpas_ocn_vel_forcing_explicit_bottom_drag.F │ │ ├── mpas_ocn_vel_forcing_rayleigh.F │ │ ├── mpas_ocn_vel_forcing_surface_stress.F │ │ ├── mpas_ocn_vel_hmix.F │ │ ├── mpas_ocn_vel_hmix_del2.F │ │ ├── mpas_ocn_vel_hmix_del4.F │ │ ├── mpas_ocn_vel_hmix_leith.F │ │ ├── mpas_ocn_vel_pressure_grad.F │ │ ├── mpas_ocn_vel_vadv.F │ │ ├── mpas_ocn_vmix.F │ │ ├── mpas_ocn_vmix_coefs_const.F │ │ ├── mpas_ocn_vmix_coefs_redi.F │ │ ├── mpas_ocn_vmix_coefs_rich.F │ │ ├── mpas_ocn_vmix_coefs_tanh.F │ │ └── mpas_ocn_vmix_cvmix.F │ └── tracer_groups │ │ ├── Registry_DMS.xml │ │ ├── Registry_MacroMolecules.xml │ │ ├── Registry_TEMPLATEGRP.xml │ │ ├── Registry_activeTracers.xml │ │ ├── Registry_debugTracers.xml │ │ ├── Registry_ecosys.xml │ │ └── Registry_tracers.xml ├── core_seaice │ ├── Makefile │ ├── Registry.xml │ ├── analysis_members │ │ ├── Makefile │ │ ├── Registry_seaice_TEMPLATE.xml │ │ ├── Registry_seaice_analysis_members.xml │ │ ├── Registry_seaice_area_variables.xml │ │ ├── Registry_seaice_conservation_check.xml │ │ ├── Registry_seaice_geographical_vectors.xml │ │ ├── Registry_seaice_high_frequency_output.xml │ │ ├── Registry_seaice_ice_present.xml │ │ ├── Registry_seaice_ice_shelves.xml │ │ ├── Registry_seaice_load_balance.xml │ │ ├── Registry_seaice_maximum_ice_presence.xml │ │ ├── Registry_seaice_miscellaneous.xml │ │ ├── Registry_seaice_pointwise_stats.xml │ │ ├── Registry_seaice_pond_diagnostics.xml │ │ ├── Registry_seaice_regional_statistics.xml │ │ ├── Registry_seaice_ridging_diagnostics.xml │ │ ├── Registry_seaice_temperatures.xml │ │ ├── Registry_seaice_time_series_stats.xml │ │ ├── Registry_seaice_time_series_stats_climatology.xml │ │ ├── Registry_seaice_time_series_stats_custom.xml │ │ ├── Registry_seaice_time_series_stats_daily.xml │ │ ├── Registry_seaice_time_series_stats_monthly.xml │ │ ├── Registry_seaice_unit_conversion.xml │ │ ├── mpas_seaice_TEMPLATE.F │ │ ├── mpas_seaice_analysis_driver.F │ │ ├── mpas_seaice_area_variables.F │ │ ├── mpas_seaice_conservation_check.F │ │ ├── mpas_seaice_deactivate_unneeded_fields.F │ │ ├── mpas_seaice_geographical_vectors.F │ │ ├── mpas_seaice_high_frequency_output.F │ │ ├── mpas_seaice_ice_present.F │ │ ├── mpas_seaice_ice_shelves.F │ │ ├── mpas_seaice_load_balance.F │ │ ├── mpas_seaice_maximum_ice_presence.F │ │ ├── mpas_seaice_miscellaneous.F │ │ ├── mpas_seaice_pointwise_stats.F │ │ ├── mpas_seaice_pond_diagnostics.F │ │ ├── mpas_seaice_regional_statistics.F │ │ ├── mpas_seaice_ridging_diagnostics.F │ │ ├── mpas_seaice_temperatures.F │ │ ├── mpas_seaice_time_series_stats.F │ │ ├── mpas_seaice_unit_conversion.F │ │ └── time_series_inc │ │ │ ├── copy_field.F │ │ │ ├── copy_field_1.inc │ │ │ ├── copy_field_2.inc │ │ │ ├── operate.F │ │ │ ├── operate_1.inc │ │ │ ├── operate_2.inc │ │ │ ├── operate_2_sos.inc │ │ │ └── operate_3.inc │ ├── build_options.mk │ ├── column │ │ ├── .gitignore │ │ ├── Makefile │ │ ├── REVISION │ │ ├── constants │ │ │ ├── cesm │ │ │ │ └── ice_constants_colpkg.F90 │ │ │ └── cice │ │ │ │ └── ice_constants_colpkg.F90 │ │ ├── documentation │ │ │ ├── ACMECollabAgreement_CICE_Hunke_Jul2015.pdf │ │ │ ├── DocForChanges.pdf │ │ │ ├── DocForChanges.rtf │ │ │ └── README │ │ ├── ice_aerosol.F90 │ │ ├── ice_age.F90 │ │ ├── ice_algae.F90 │ │ ├── ice_atmo.F90 │ │ ├── ice_brine.F90 │ │ ├── ice_colpkg.F90 │ │ ├── ice_colpkg_shared.F90 │ │ ├── ice_colpkg_tracers.F90 │ │ ├── ice_firstyear.F90 │ │ ├── ice_flux_colpkg.F90 │ │ ├── ice_itd.F90 │ │ ├── ice_kinds_mod.F90 │ │ ├── ice_mechred.F90 │ │ ├── ice_meltpond_cesm.F90 │ │ ├── ice_meltpond_lvl.F90 │ │ ├── ice_meltpond_topo.F90 │ │ ├── ice_mushy_physics.F90 │ │ ├── ice_orbital.F90 │ │ ├── ice_shortwave.F90 │ │ ├── ice_therm_0layer.F90 │ │ ├── ice_therm_bl99.F90 │ │ ├── ice_therm_itd.F90 │ │ ├── ice_therm_mushy.F90 │ │ ├── ice_therm_shared.F90 │ │ ├── ice_therm_vertical.F90 │ │ ├── ice_warnings.F90 │ │ ├── ice_zbgc.F90 │ │ ├── ice_zbgc_shared.F90 │ │ └── ice_zsalinity.F90 │ ├── model_forward │ │ ├── Makefile │ │ ├── mpas_seaice_core.F │ │ └── mpas_seaice_core_interface.F │ └── shared │ │ ├── Makefile │ │ ├── mpas_seaice_advection.F │ │ ├── mpas_seaice_advection_incremental_remap.F │ │ ├── mpas_seaice_advection_incremental_remap_tracers.F │ │ ├── mpas_seaice_advection_upwind.F │ │ ├── mpas_seaice_column.F │ │ ├── mpas_seaice_constants.F │ │ ├── mpas_seaice_diagnostics.F │ │ ├── mpas_seaice_error.F │ │ ├── mpas_seaice_forcing.F │ │ ├── mpas_seaice_initialize.F │ │ ├── mpas_seaice_mesh.F │ │ ├── mpas_seaice_numerics.F │ │ ├── mpas_seaice_testing.F │ │ ├── mpas_seaice_time_integration.F │ │ ├── mpas_seaice_unit_test.F │ │ ├── mpas_seaice_velocity_solver.F │ │ ├── mpas_seaice_velocity_solver_constitutive_relation.F │ │ ├── mpas_seaice_velocity_solver_pwl.F │ │ ├── mpas_seaice_velocity_solver_unit_tests.F │ │ ├── mpas_seaice_velocity_solver_variational.F │ │ ├── mpas_seaice_velocity_solver_variational_shared.F │ │ ├── mpas_seaice_velocity_solver_wachspress.F │ │ └── mpas_seaice_velocity_solver_weak.F ├── core_sw │ ├── Makefile │ ├── Registry.xml │ ├── build_options.mk │ ├── mpas_sw_advection.F │ ├── mpas_sw_constants.F │ ├── mpas_sw_core.F │ ├── mpas_sw_core_interface.F │ ├── mpas_sw_global_diagnostics.F │ ├── mpas_sw_test_cases.F │ └── mpas_sw_time_integration.F ├── core_test │ ├── Makefile │ ├── Registry.xml │ ├── build_options.mk │ ├── mpas_halo_testing.F │ ├── mpas_test_core.F │ ├── mpas_test_core_dmpar.F │ ├── mpas_test_core_field_tests.F │ ├── mpas_test_core_halo_exch.F │ ├── mpas_test_core_interface.F │ ├── mpas_test_core_sorting.F │ ├── mpas_test_core_stream_inquiry.F │ ├── mpas_test_core_streams.F │ ├── mpas_test_core_string_utils.F │ ├── mpas_test_core_timekeeping_tests.F │ └── mpas_test_openacc.F ├── driver │ ├── Makefile │ ├── mpas.F │ └── mpas_subdriver.F ├── external │ ├── Makefile │ ├── SMIOL │ │ ├── CMakeLists.txt │ │ ├── Makefile │ │ ├── gen_put_get.sh │ │ ├── smiol.c │ │ ├── smiol.h │ │ ├── smiol_codes.inc │ │ ├── smiol_types.h │ │ ├── smiol_utils.c │ │ ├── smiol_utils.h │ │ ├── smiolf.F90 │ │ └── smiolf_put_get_var.inc │ ├── esmf_time_f90 │ │ ├── .gitignore │ │ ├── CMakeLists.txt │ │ ├── ChangeLog │ │ ├── ESMF.F90 │ │ ├── ESMF_AlarmClockMod.F90 │ │ ├── ESMF_AlarmMod.F90 │ │ ├── ESMF_BaseMod.F90 │ │ ├── ESMF_BaseTimeMod.F90 │ │ ├── ESMF_CalendarMod.F90 │ │ ├── ESMF_ClockMod.F90 │ │ ├── ESMF_FractionMod.F90 │ │ ├── ESMF_Macros.inc │ │ ├── ESMF_ShrTimeMod.F90 │ │ ├── ESMF_Stubs.F90 │ │ ├── ESMF_TimeIntervalMod.F90 │ │ ├── ESMF_TimeMgr.inc │ │ ├── ESMF_TimeMod.F90 │ │ ├── Makefile │ │ ├── MeatMod.F90 │ │ ├── README │ │ ├── wrf_error_fatal.F90 │ │ └── wrf_message.F90 │ └── ezxml │ │ ├── CMakeLists.txt │ │ ├── LICENSE │ │ ├── Makefile │ │ ├── ezxml.c │ │ └── ezxml.h ├── framework │ ├── CMakeLists.txt │ ├── Makefile │ ├── add_field_indices.inc │ ├── duplicate_field_array.inc │ ├── duplicate_field_scalar.inc │ ├── mpas_abort.F │ ├── mpas_attlist.F │ ├── mpas_attlist_types.inc │ ├── mpas_block_creator.F │ ├── mpas_block_decomp.F │ ├── mpas_block_types.inc │ ├── mpas_bootstrapping.F │ ├── mpas_c_interfacing.F │ ├── mpas_constants.F │ ├── mpas_core_types.inc │ ├── mpas_decomp.F │ ├── mpas_decomp_types.inc │ ├── mpas_derived_types.F │ ├── mpas_dmpar.F │ ├── mpas_dmpar_types.inc │ ├── mpas_domain_routines.F │ ├── mpas_domain_types.inc │ ├── mpas_field_routines.F │ ├── mpas_field_types.inc │ ├── mpas_forcing.F │ ├── mpas_forcing_types.inc │ ├── mpas_framework.F │ ├── mpas_halo.F │ ├── mpas_halo_types.inc │ ├── mpas_hash.F │ ├── mpas_hash_types.inc │ ├── mpas_io.F │ ├── mpas_io_streams.F │ ├── mpas_io_streams_types.inc │ ├── mpas_io_types.inc │ ├── mpas_io_units.F │ ├── mpas_kind_types.F │ ├── mpas_log.F │ ├── mpas_log_types.inc │ ├── mpas_particle_list_types.inc │ ├── mpas_pool_routines.F │ ├── mpas_pool_types.inc │ ├── mpas_sort.F │ ├── mpas_stream_inquiry.F │ ├── mpas_stream_inquiry_types.inc │ ├── mpas_stream_list.F │ ├── mpas_stream_list_types.inc │ ├── mpas_stream_manager.F │ ├── mpas_stream_manager_types.inc │ ├── mpas_string_utils.F │ ├── mpas_threading.F │ ├── mpas_timekeeping.F │ ├── mpas_timekeeping_types.inc │ ├── mpas_timer.F │ ├── mpas_timer_types.inc │ ├── pool_hash.c │ ├── random_id.c │ ├── regex_matching.c │ ├── shift_time_levs_array.inc │ ├── shift_time_levs_scalar.inc │ ├── stream_inquiry.c │ └── xml_stream_parser.c ├── operators │ ├── CMakeLists.txt │ ├── Makefile │ ├── mpas_geometry_utils.F │ ├── mpas_matrix_operations.F │ ├── mpas_rbf_interpolation.F │ ├── mpas_spline_interpolation.F │ ├── mpas_tensor_operations.F │ ├── mpas_tracer_advection_helpers.F │ ├── mpas_tracer_advection_mono.F │ ├── mpas_tracer_advection_std.F │ ├── mpas_vector_operations.F │ └── mpas_vector_reconstruction.F └── tools │ ├── CMakeLists.txt │ ├── Makefile │ ├── input_gen │ ├── .gitignore │ ├── CMakeLists.txt │ ├── Makefile │ ├── namelist_gen.c │ ├── streams_gen.c │ ├── test_functions.c │ └── test_functions.h │ └── registry │ ├── .gitignore │ ├── CMakeLists.txt │ ├── Makefile │ ├── Registry.xsd │ ├── dictionary.c │ ├── dictionary.h │ ├── fortprintf.c │ ├── fortprintf.h │ ├── gen_inc.c │ ├── gen_inc.h │ ├── parse.c │ ├── registry_types.h │ ├── utility.c │ └── utility.h └── testing_and_setup ├── atmosphere ├── setup_atm_run_dir └── setup_run_dir.py ├── compass ├── .gitignore ├── README ├── clean_testcase.py ├── doc │ ├── README.config │ ├── README.driver_script │ ├── README.regression_suite │ ├── README.run_config │ └── README.template ├── general.config.landice ├── general.config.ocean ├── general.config.test ├── landice │ ├── EISMINT1 │ │ ├── 50000m │ │ │ ├── EISMINT-1_50000m_template.xml │ │ │ ├── MovingMargin1 │ │ │ │ ├── config_driver.xml │ │ │ │ ├── config_run_model_step.xml │ │ │ │ └── config_setup_mesh_step.xml │ │ │ └── periodic_hex.namelist.input │ │ ├── check_output_eismint-mm1.py │ │ └── setup_initial_conditions_EISMINT1-MovingMargin-1.py │ ├── EISMINT2 │ │ ├── 25000m │ │ │ ├── EISMINT2_25000m_template.xml │ │ │ ├── decomposition_test │ │ │ │ ├── config_driver.xml │ │ │ │ ├── config_experiment_F_1p.xml │ │ │ │ ├── config_experiment_F_4p.xml │ │ │ │ ├── config_setup_mesh_step.xml │ │ │ │ └── output_comparison.xml │ │ │ ├── periodic_hex.namelist.input │ │ │ └── standard_experiments │ │ │ │ ├── config_driver.xml │ │ │ │ ├── config_experiment_A.xml │ │ │ │ ├── config_experiment_B.xml │ │ │ │ ├── config_experiment_C.xml │ │ │ │ ├── config_experiment_D.xml │ │ │ │ ├── config_experiment_E.xml │ │ │ │ ├── config_experiment_F.xml │ │ │ │ ├── config_experiment_G.xml │ │ │ │ └── config_setup_mesh_step.xml │ │ ├── setup_initial_conditions_EISMINT2.py │ │ └── visualize_output_EISMINT2.py │ ├── MISMIP+ │ │ ├── README.mismip+ │ │ ├── albany_input.xml │ │ ├── cull_cells_for_MISMIP.py │ │ ├── mismip+PlotGL.py │ │ ├── mismip+ResolutionAnalysis.py │ │ ├── mismip+WriteGL.py │ │ ├── mismip+_template.xml │ │ ├── setup_mismip+_initial_conditions.py │ │ ├── setup_mismip+_subdirectories.py │ │ └── standard_resolution │ │ │ └── standard_test │ │ │ ├── README │ │ │ ├── config_setup_experiments.xml │ │ │ ├── namelist.input │ │ │ ├── namelist.input.1000m │ │ │ ├── namelist.input.2000m │ │ │ ├── namelist.input.4000m │ │ │ ├── namelist.input.500m │ │ │ └── namelist.input.8000m │ ├── MISMIP3D │ │ ├── README │ │ ├── README.P75S_R │ │ ├── albany_input.xml │ │ ├── cull_cells_for_MISMIP.py │ │ ├── full_width │ │ │ └── Stnd │ │ │ │ ├── config_10000m.xml │ │ │ │ ├── config_1000m.xml │ │ │ │ ├── config_2000m.xml │ │ │ │ ├── config_250m.xml │ │ │ │ ├── config_5000m.xml │ │ │ │ ├── config_500m.xml │ │ │ │ ├── config_P75.xml │ │ │ │ ├── config_driver.xml │ │ │ │ ├── namelist.input.10000m │ │ │ │ ├── namelist.input.1000m │ │ │ │ ├── namelist.input.2000m │ │ │ │ ├── namelist.input.250m │ │ │ │ ├── namelist.input.5000m │ │ │ │ └── namelist.input.500m │ │ ├── minimal_width │ │ │ └── Stnd │ │ │ │ ├── config_10000m.xml │ │ │ │ ├── config_1000m.xml │ │ │ │ ├── config_2000m.xml │ │ │ │ ├── config_250m.xml │ │ │ │ ├── config_5000m.xml │ │ │ │ ├── config_500m.xml │ │ │ │ ├── config_driver.xml │ │ │ │ ├── namelist.input.10000m │ │ │ │ ├── namelist.input.1000m │ │ │ │ ├── namelist.input.2000m │ │ │ │ ├── namelist.input.250m │ │ │ │ ├── namelist.input.5000m │ │ │ │ └── namelist.input.500m │ │ ├── mismip_template.xml │ │ ├── plot_GL_Stnd_MISMIP3D.py │ │ ├── plot_Perturbation_MISMIP3d.py │ │ ├── plot_speed_profiles.py │ │ ├── setup_mismip3d_initial_conditions.py │ │ └── setup_mismip3d_perturb_domain.py │ ├── Thwaites_variability │ │ ├── 1km_varres_jigsaw │ │ │ └── standard_configuration │ │ │ │ ├── README │ │ │ │ ├── config_setup_experiments.xml │ │ │ │ └── jigsaw │ │ │ │ └── generate_Thwaites_mesh.m │ │ ├── 4km_varres │ │ │ └── standard_configuration │ │ │ │ ├── config_driver.xml │ │ │ │ └── config_setup_model_step.xml │ │ ├── README │ │ ├── albany_input.xml │ │ ├── compare_variability_runs.py │ │ ├── finalize_thwaites_initial_conditions.py │ │ ├── setup_many_runs.sh │ │ ├── slurm.edison_bundle.run │ │ ├── slurm.wolf.run │ │ ├── thwaites_minimal.geojson │ │ ├── thwaites_template.xml │ │ └── uniform_resolution │ │ │ └── resolution_testing_configuration │ │ │ ├── config_setup_experiments.xml │ │ │ ├── namelist.input │ │ │ ├── namelist.input.0500m │ │ │ ├── namelist.input.1000m │ │ │ ├── namelist.input.2000m │ │ │ ├── namelist.input.4000m │ │ │ └── namelist.input.8000m │ ├── circular-shelf │ │ ├── 1250m │ │ │ ├── circular-shelf_1250m_template.xml │ │ │ ├── decomposition_test │ │ │ │ ├── config_1proc_run_model_step.xml │ │ │ │ ├── config_4proc_run_model_step.xml │ │ │ │ ├── config_driver.xml │ │ │ │ ├── config_setup_mesh_step.xml │ │ │ │ └── output_comparison.xml │ │ │ ├── periodic_hex.namelist.input │ │ │ └── smoketest │ │ │ │ ├── config_driver.xml │ │ │ │ ├── config_run_model_step.xml │ │ │ │ └── config_setup_mesh_step.xml │ │ ├── albany_input.xml │ │ ├── setup_circular_shelf_initial_conditions.py │ │ └── visualize_circular_shelf.py │ ├── confined-shelf │ │ ├── 5000m │ │ │ ├── confined-shelf_5000m_template.xml │ │ │ ├── decomposition_test │ │ │ │ ├── config_1proc_run_model_step.xml │ │ │ │ ├── config_4proc_run_model_step.xml │ │ │ │ ├── config_driver.xml │ │ │ │ ├── config_setup_mesh_step.xml │ │ │ │ └── output_comparison.xml │ │ │ ├── periodic_hex.namelist.input │ │ │ └── smoketest │ │ │ │ ├── config_driver.xml │ │ │ │ ├── config_run_model_step.xml │ │ │ │ └── config_setup_mesh_step.xml │ │ ├── albany_input.xml │ │ ├── setup_confined_shelf_initial_conditions.py │ │ └── visualize_confined_shelf.py │ ├── dome │ │ ├── 2000m │ │ │ ├── decomposition_test │ │ │ │ ├── config_1proc_run_model_step.xml │ │ │ │ ├── config_4proc_run_model_step.xml │ │ │ │ ├── config_driver.xml │ │ │ │ ├── config_setup_mesh_step.xml │ │ │ │ └── output_comparison.xml │ │ │ ├── dome_2000m_template.xml │ │ │ ├── halfar_analytic_test │ │ │ │ ├── config_driver.xml │ │ │ │ ├── config_run_model_step.xml │ │ │ │ └── config_setup_mesh_step.xml │ │ │ ├── ho_decomposition_test │ │ │ │ ├── config_1proc_run_model_step.xml │ │ │ │ ├── config_4proc_run_model_step.xml │ │ │ │ ├── config_driver.xml │ │ │ │ ├── config_setup_mesh_step.xml │ │ │ │ └── output_comparison.xml │ │ │ ├── ho_restart_test │ │ │ │ ├── config_driver.xml │ │ │ │ ├── config_full_run_step.xml │ │ │ │ ├── config_restart_run_step.xml │ │ │ │ ├── config_setup_mesh_step.xml │ │ │ │ └── output_comparison.xml │ │ │ ├── ho_vs_sia_test │ │ │ │ ├── config_driver.xml │ │ │ │ ├── config_ho_run_model_step.xml │ │ │ │ ├── config_setup_mesh_step.xml │ │ │ │ ├── config_sia_run_model_step.xml │ │ │ │ └── output_comparison.xml │ │ │ ├── periodic_hex.namelist.input │ │ │ ├── restart_test │ │ │ │ ├── config_driver.xml │ │ │ │ ├── config_full_run_step.xml │ │ │ │ ├── config_restart_run_step.xml │ │ │ │ ├── config_setup_mesh_step.xml │ │ │ │ └── output_comparison.xml │ │ │ └── smoketest │ │ │ │ ├── config_driver.xml │ │ │ │ ├── config_run_model_step.xml │ │ │ │ └── config_setup_mesh_step.xml │ │ ├── albany_input.xml │ │ ├── check_halfar_solution.py │ │ ├── setup_dome_initial_conditions.py │ │ ├── variable_resolution │ │ │ ├── decomposition_test │ │ │ │ ├── config_1proc_run_model_step.xml │ │ │ │ ├── config_4proc_run_model_step.xml │ │ │ │ ├── config_driver.xml │ │ │ │ ├── config_setup_mesh_step.xml │ │ │ │ └── output_comparison.xml │ │ │ ├── dome_varres_template.xml │ │ │ ├── halfar_analytic_test │ │ │ │ ├── config_driver.xml │ │ │ │ ├── config_run_model_step.xml │ │ │ │ └── config_setup_mesh_step.xml │ │ │ ├── ho_decomposition_test │ │ │ │ ├── config_1proc_run_model_step.xml │ │ │ │ ├── config_4proc_run_model_step.xml │ │ │ │ ├── config_driver.xml │ │ │ │ ├── config_setup_mesh_step.xml │ │ │ │ └── output_comparison.xml │ │ │ ├── ho_restart_test │ │ │ │ ├── config_driver.xml │ │ │ │ ├── config_full_run_step.xml │ │ │ │ ├── config_restart_run_step.xml │ │ │ │ ├── config_setup_mesh_step.xml │ │ │ │ └── output_comparison.xml │ │ │ ├── restart_test │ │ │ │ ├── config_driver.xml │ │ │ │ ├── config_full_run_step.xml │ │ │ │ ├── config_restart_run_step.xml │ │ │ │ ├── config_setup_mesh_step.xml │ │ │ │ └── output_comparison.xml │ │ │ └── smoketest │ │ │ │ ├── config_driver.xml │ │ │ │ ├── config_run_model_step.xml │ │ │ │ └── config_setup_mesh_step.xml │ │ ├── variable_resolution_jigsaw │ │ │ └── generate_varres_dome_mesh.m │ │ └── visualize_dome.py │ ├── greenland │ │ ├── 20km │ │ │ ├── decomposition_test │ │ │ │ ├── config_1proc_run_model_step.xml │ │ │ │ ├── config_8proc_run_model_step.xml │ │ │ │ ├── config_driver.xml │ │ │ │ └── output_comparison.xml │ │ │ ├── greenland_20km_template.xml │ │ │ ├── restart_test │ │ │ │ ├── config_driver.xml │ │ │ │ ├── config_full_run_step.xml │ │ │ │ ├── config_restart_run_step.xml │ │ │ │ └── output_comparison.xml │ │ │ └── smoke_test │ │ │ │ ├── config_driver.xml │ │ │ │ └── config_run_model_step.xml │ │ └── albany_input.xml │ ├── hydro-radial │ │ ├── 1000m │ │ │ ├── decomposition_test │ │ │ │ ├── config_1proc_run_model_step.xml │ │ │ │ ├── config_3proc_run_model_step.xml │ │ │ │ ├── config_driver.xml │ │ │ │ ├── config_setup_mesh_step.xml │ │ │ │ └── output_comparison.xml │ │ │ ├── periodic_hex.namelist.input │ │ │ ├── restart_test │ │ │ │ ├── config_driver.xml │ │ │ │ ├── config_full_run_step.xml │ │ │ │ ├── config_restart_run_step.xml │ │ │ │ ├── config_setup_mesh_step.xml │ │ │ │ └── output_comparison.xml │ │ │ ├── spinup_test │ │ │ │ ├── config_driver.xml │ │ │ │ ├── config_run_model_step.xml │ │ │ │ └── config_setup_mesh_step.xml │ │ │ └── steady_state_drift_test │ │ │ │ ├── config_driver.xml │ │ │ │ ├── config_run_model_step.xml │ │ │ │ └── config_setup_mesh_step.xml │ │ ├── README │ │ ├── params.m │ │ ├── plot_hydro-radial_profile.py │ │ ├── psteady.m │ │ ├── radial_template.xml │ │ ├── radialsteady.m │ │ ├── setup_hydro-radial_initial_conditions.py │ │ └── setup_mpas_radial_IC.m │ ├── hydro-ramp │ │ ├── 20000m │ │ │ ├── periodic_hex.namelist.input │ │ │ ├── ramp_20000m_template.xml │ │ │ └── smoketest │ │ │ │ ├── config_driver.xml │ │ │ │ ├── config_run_model_step.xml │ │ │ │ └── config_setup_mesh_step.xml │ │ ├── plot_hydro-ramp_profile.py │ │ └── setup_hydro-ramp_initial_conditions.py │ ├── hydro-shmip │ │ ├── convert_mpas_to_shmip.py │ │ ├── standard_resolution │ │ │ ├── README │ │ │ ├── experiment_A │ │ │ │ ├── config_driver.xml │ │ │ │ ├── config_experiment_A1.xml │ │ │ │ ├── config_experiment_A2.xml │ │ │ │ ├── config_experiment_A3.xml │ │ │ │ ├── config_experiment_A4.xml │ │ │ │ ├── config_experiment_A5.xml │ │ │ │ ├── config_experiment_A6.xml │ │ │ │ ├── config_setup_sqrt_mesh_step.xml │ │ │ │ └── setup_hydro-shmip_experimentA_initial_conditions.py │ │ │ ├── experiment_B │ │ │ │ ├── config_driver.xml │ │ │ │ ├── config_experiment_B1.xml │ │ │ │ ├── config_experiment_B2.xml │ │ │ │ ├── config_experiment_B3.xml │ │ │ │ ├── config_experiment_B4.xml │ │ │ │ ├── config_experiment_B5.xml │ │ │ │ └── setup_hydro-shmip_experimentB_initial_conditions.py │ │ │ ├── experiment_C │ │ │ │ ├── config_driver.xml │ │ │ │ ├── config_experiment_C1.xml │ │ │ │ ├── config_experiment_C2.xml │ │ │ │ ├── config_experiment_C3.xml │ │ │ │ ├── config_experiment_C4.xml │ │ │ │ └── setup_hydro-shmip_experimentC_initial_conditions.py │ │ │ ├── experiment_D │ │ │ │ ├── config_driver.xml │ │ │ │ ├── config_experiment_D1.xml │ │ │ │ ├── config_experiment_D2.xml │ │ │ │ ├── config_experiment_D3.xml │ │ │ │ ├── config_experiment_D4.xml │ │ │ │ ├── config_experiment_D5.xml │ │ │ │ └── setup_hydro-shmip_experimentD_initial_conditions.py │ │ │ ├── experiment_E │ │ │ │ ├── config_driver.xml │ │ │ │ ├── config_experiment_E1.xml │ │ │ │ ├── config_setup_valley_mesh_step.xml │ │ │ │ └── setup_hydro-shmip_experimentE_initial_conditions.py │ │ │ ├── periodic_hex.namelist.input.sqrt │ │ │ ├── periodic_hex.namelist.input.sqrt.1km │ │ │ ├── periodic_hex.namelist.input.sqrt.250m │ │ │ ├── periodic_hex.namelist.input.sqrt.2km │ │ │ ├── periodic_hex.namelist.input.sqrt.500m │ │ │ ├── periodic_hex.namelist.input.valley │ │ │ └── shmip_template.xml │ │ ├── visualize_output_shmip.py │ │ ├── visualize_output_shmip_C.py │ │ └── visualize_output_shmip_D.py │ ├── initMIP-AIS │ │ ├── bmb │ │ │ ├── Test_evolve_temp_calving_uniformBasinK_new_Use1300RestartDirectly │ │ │ │ ├── namelist.landice │ │ │ │ └── streams.landice │ │ │ └── Test_evolve_temp_restore_calving │ │ │ │ ├── namelist.landice │ │ │ │ └── streams.landice │ │ ├── build_bmb_forcing.sh │ │ ├── build_smb_forcing.sh │ │ ├── ctrl │ │ │ ├── Test_evolve_temp_calving_uniformBasinK_new_Use1300RestartDirectly │ │ │ │ ├── namelist.landice │ │ │ │ └── streams.landice │ │ │ └── Test_evolve_temp_restore_calving │ │ │ │ ├── namelist.landice │ │ │ │ └── streams.landice │ │ ├── plot_globalStats.py │ │ ├── plot_regionalStats.py │ │ ├── process_xtime.py │ │ └── spinup │ │ │ ├── calibrate_calving_parameter.py │ │ │ └── plot_stats_for_paper.py │ └── regression_suites │ │ ├── ho_integration_test_suite.xml │ │ └── standard_integration_test_suite.xml ├── list_testcases.py ├── manage_regression_suite.py ├── ocean │ ├── baroclinic_channel │ │ └── 10km │ │ │ ├── baroclinic_channel_10km_template.xml │ │ │ ├── decomp_test │ │ │ ├── config_4proc_run.xml │ │ │ ├── config_8proc_run.xml │ │ │ ├── config_driver.xml │ │ │ ├── config_init1.xml │ │ │ └── config_init2.xml │ │ │ ├── default │ │ │ ├── config_driver.xml │ │ │ ├── config_forward.xml │ │ │ ├── config_init1.xml │ │ │ └── config_init2.xml │ │ │ ├── restart_test │ │ │ ├── config_driver.xml │ │ │ ├── config_full_run.xml │ │ │ ├── config_init1.xml │ │ │ ├── config_init2.xml │ │ │ ├── config_restart_run.xml │ │ │ └── restart_setup_template.xml │ │ │ └── threads_test │ │ │ ├── config_4proc_run.xml │ │ │ ├── config_8proc_run.xml │ │ │ ├── config_driver.xml │ │ │ ├── config_init1.xml │ │ │ └── config_init2.xml │ ├── global_ocean │ │ ├── EC120to60 │ │ │ ├── default │ │ │ │ ├── .gitignore │ │ │ │ ├── config_driver.xml │ │ │ │ ├── config_forward.xml │ │ │ │ ├── config_init1.xml │ │ │ │ └── config_init2.xml │ │ │ ├── spin_up │ │ │ │ ├── .gitignore │ │ │ │ ├── config_driver.xml │ │ │ │ ├── config_forward.xml │ │ │ │ ├── config_init1.xml │ │ │ │ ├── config_init2.xml │ │ │ │ └── config_spin_up1.xml │ │ │ └── template_forward.xml │ │ ├── EC60to30 │ │ │ ├── default │ │ │ │ ├── .gitignore │ │ │ │ ├── config_driver.xml │ │ │ │ ├── config_forward.xml │ │ │ │ ├── config_init1.xml │ │ │ │ └── config_init2.xml │ │ │ ├── five_cell │ │ │ │ ├── config_driver.xml │ │ │ │ ├── config_forward.xml │ │ │ │ ├── config_init1.xml │ │ │ │ ├── config_init2.xml │ │ │ │ └── land_coverage_5_cell.geojson │ │ │ ├── single_cell │ │ │ │ ├── config_driver.xml │ │ │ │ ├── config_forward.xml │ │ │ │ ├── config_init1.xml │ │ │ │ ├── config_init2.xml │ │ │ │ └── land_coverage_1_cell.geojson │ │ │ ├── spin_up │ │ │ │ ├── .gitignore │ │ │ │ ├── config_driver.xml │ │ │ │ ├── config_forward.xml │ │ │ │ ├── config_init1.xml │ │ │ │ ├── config_init2.xml │ │ │ │ └── config_spin_up1.xml │ │ │ ├── template_forward.xml │ │ │ └── with_land_ice │ │ │ │ ├── .gitignore │ │ │ │ ├── config_adjust_ssh.xml │ │ │ │ ├── config_driver.xml │ │ │ │ ├── config_forward.xml │ │ │ │ ├── config_init1.xml │ │ │ │ ├── config_init2.xml │ │ │ │ ├── config_init2_smoothed.xml │ │ │ │ └── config_spin_up1.xml │ │ ├── QU120 │ │ │ ├── default │ │ │ │ ├── .gitignore │ │ │ │ ├── config_driver.xml │ │ │ │ ├── config_forward.xml │ │ │ │ ├── config_init1.xml │ │ │ │ └── config_init2.xml │ │ │ ├── ecosys_60_layer │ │ │ │ ├── config_driver.xml │ │ │ │ ├── config_forward.xml │ │ │ │ ├── config_init1.xml │ │ │ │ └── config_init2.xml │ │ │ ├── template_forward.xml │ │ │ └── with_land_ice │ │ │ │ ├── .gitignore │ │ │ │ ├── config_adjust_ssh.xml │ │ │ │ ├── config_driver.xml │ │ │ │ ├── config_forward.xml │ │ │ │ ├── config_init1.xml │ │ │ │ └── config_init2.xml │ │ ├── QU240 │ │ │ ├── analysis_test │ │ │ │ ├── config_driver.xml │ │ │ │ ├── config_forward.xml │ │ │ │ ├── config_init1.xml │ │ │ │ └── config_init2.xml │ │ │ ├── default │ │ │ │ ├── .gitignore │ │ │ │ ├── config_driver.xml │ │ │ │ ├── config_forward.xml │ │ │ │ ├── config_init1.xml │ │ │ │ └── config_init2.xml │ │ │ ├── performance_test │ │ │ │ ├── config_driver.xml │ │ │ │ ├── config_forward.xml │ │ │ │ ├── config_init1.xml │ │ │ │ └── config_init2.xml │ │ │ ├── restart_test │ │ │ │ ├── .gitignore │ │ │ │ ├── config_driver.xml │ │ │ │ ├── config_full_run.xml │ │ │ │ ├── config_init1.xml │ │ │ │ ├── config_init2.xml │ │ │ │ ├── config_restart_run.xml │ │ │ │ └── restart_setup_template.xml │ │ │ ├── rk4_blocks_test │ │ │ │ ├── .gitignore │ │ │ │ ├── config_4blocks_run.xml │ │ │ │ ├── config_8blocks_run.xml │ │ │ │ ├── config_driver.xml │ │ │ │ ├── config_init1.xml │ │ │ │ └── config_init2.xml │ │ │ ├── se_blocks_test │ │ │ │ ├── .gitignore │ │ │ │ ├── config_4blocks_run.xml │ │ │ │ ├── config_8blocks_run.xml │ │ │ │ ├── config_driver.xml │ │ │ │ ├── config_init1.xml │ │ │ │ └── config_init2.xml │ │ │ ├── template_forward.xml │ │ │ ├── with_land_ice │ │ │ │ ├── config_adjust_ssh.xml │ │ │ │ ├── config_driver.xml │ │ │ │ ├── config_forward.xml │ │ │ │ ├── config_init1.xml │ │ │ │ └── config_init2.xml │ │ │ ├── with_land_ice_no_iter │ │ │ │ ├── .gitignore │ │ │ │ ├── config_driver.xml │ │ │ │ ├── config_forward.xml │ │ │ │ ├── config_init1.xml │ │ │ │ └── config_init2.xml │ │ │ └── zstar_128_layers │ │ │ │ ├── config_driver.xml │ │ │ │ ├── config_forward.xml │ │ │ │ ├── config_init1.xml │ │ │ │ └── config_init2.xml │ │ ├── QU480 │ │ │ ├── default │ │ │ │ ├── .gitignore │ │ │ │ ├── config_driver.xml │ │ │ │ ├── config_forward.xml │ │ │ │ ├── config_init1.xml │ │ │ │ └── config_init2.xml │ │ │ └── template_forward.xml │ │ ├── RRS15to5 │ │ │ ├── default │ │ │ │ ├── config_driver.xml │ │ │ │ ├── config_forward.xml │ │ │ │ ├── config_init1.xml │ │ │ │ └── config_init2.xml │ │ │ ├── spin_up │ │ │ │ ├── config_driver.xml │ │ │ │ ├── config_forward.xml │ │ │ │ ├── config_init1.xml │ │ │ │ ├── config_init2.xml │ │ │ │ ├── config_spin_up1.xml │ │ │ │ ├── config_spin_up2.xml │ │ │ │ ├── config_spin_up3.xml │ │ │ │ └── config_spin_up4.xml │ │ │ └── template_forward.xml │ │ ├── RRS18to6 │ │ │ ├── default │ │ │ │ ├── config_driver.xml │ │ │ │ ├── config_forward.xml │ │ │ │ ├── config_init1.xml │ │ │ │ └── config_init2.xml │ │ │ ├── spin_up │ │ │ │ ├── config_driver.xml │ │ │ │ ├── config_forward.xml │ │ │ │ ├── config_init1.xml │ │ │ │ ├── config_init2.xml │ │ │ │ ├── config_spin_up1.xml │ │ │ │ ├── config_spin_up2.xml │ │ │ │ ├── config_spin_up3.xml │ │ │ │ └── config_spin_up4.xml │ │ │ └── template_forward.xml │ │ ├── RRS30to10 │ │ │ ├── default │ │ │ │ ├── .gitignore │ │ │ │ ├── config_driver.xml │ │ │ │ ├── config_forward.xml │ │ │ │ ├── config_init1.xml │ │ │ │ └── config_init2.xml │ │ │ ├── spin_up │ │ │ │ ├── .gitignore │ │ │ │ ├── config_driver.xml │ │ │ │ ├── config_forward.xml │ │ │ │ ├── config_init1.xml │ │ │ │ ├── config_init2.xml │ │ │ │ ├── config_spin_up1.xml │ │ │ │ ├── config_spin_up2.xml │ │ │ │ ├── config_spin_up3.xml │ │ │ │ └── config_spin_up4.xml │ │ │ ├── template_forward.xml │ │ │ └── with_land_ice │ │ │ │ ├── .gitignore │ │ │ │ ├── config_adjust_ssh.xml │ │ │ │ ├── config_driver.xml │ │ │ │ ├── config_forward.xml │ │ │ │ ├── config_init1.xml │ │ │ │ ├── config_init2.xml │ │ │ │ ├── config_spin_up1.xml │ │ │ │ ├── config_spin_up2.xml │ │ │ │ ├── config_spin_up3.xml │ │ │ │ └── config_spin_up4.xml │ │ ├── init_step1.py │ │ ├── template_adjust_ssh.xml │ │ ├── template_critical_passages.xml │ │ ├── template_forward.xml │ │ ├── template_init2.xml │ │ └── template_init_with_land_ice.xml │ ├── internal_waves │ │ └── 5km │ │ │ ├── default │ │ │ ├── config_driver.xml │ │ │ ├── config_forward.xml │ │ │ ├── config_init1.xml │ │ │ └── config_init2.xml │ │ │ ├── internal_waves_5km_template.xml │ │ │ └── ten-day │ │ │ ├── config_driver.xml │ │ │ ├── config_forward.xml │ │ │ ├── config_init1.xml │ │ │ └── config_init2.xml │ ├── isomip │ │ ├── 10km │ │ │ ├── expt1.01 │ │ │ │ ├── config_adjust_ssh.xml │ │ │ │ ├── config_driver.xml │ │ │ │ ├── config_forward.xml │ │ │ │ ├── config_init1.xml │ │ │ │ └── config_init2.xml │ │ │ └── expt2.01 │ │ │ │ ├── config_adjust_ssh.xml │ │ │ │ ├── config_driver.xml │ │ │ │ ├── config_forward.xml │ │ │ │ ├── config_init1.xml │ │ │ │ └── config_init2.xml │ │ ├── template_adjust_ssh.xml │ │ ├── template_forward.xml │ │ └── template_init.xml │ ├── isomip_plus │ │ ├── 2km │ │ │ ├── Ocean0 │ │ │ │ ├── .gitignore │ │ │ │ ├── config_adjust_ssh.xml │ │ │ │ ├── config_driver.xml │ │ │ │ ├── config_forward.xml │ │ │ │ ├── config_forward_kpp.xml │ │ │ │ ├── config_forward_short.xml │ │ │ │ ├── config_forward_unforced.xml │ │ │ │ ├── config_init1.xml │ │ │ │ └── config_init2.xml │ │ │ ├── Ocean1 │ │ │ │ ├── config_adjust_ssh.xml │ │ │ │ ├── config_driver.xml │ │ │ │ ├── config_forward.xml │ │ │ │ ├── config_forward_kpp.xml │ │ │ │ ├── config_forward_short.xml │ │ │ │ ├── config_init1.xml │ │ │ │ └── config_init2.xml │ │ │ └── Ocean2 │ │ │ │ ├── config_adjust_ssh.xml │ │ │ │ ├── config_driver.xml │ │ │ │ ├── config_forward.xml │ │ │ │ ├── config_forward_kpp.xml │ │ │ │ ├── config_forward_short.xml │ │ │ │ ├── config_init1.xml │ │ │ │ └── config_init2.xml │ │ ├── 5km │ │ │ ├── Ocean0 │ │ │ │ ├── .gitignore │ │ │ │ ├── config_adjust_ssh.xml │ │ │ │ ├── config_driver.xml │ │ │ │ ├── config_forward.xml │ │ │ │ ├── config_init1.xml │ │ │ │ └── config_init2.xml │ │ │ ├── Ocean1 │ │ │ │ ├── config_adjust_ssh.xml │ │ │ │ ├── config_driver.xml │ │ │ │ ├── config_forward.xml │ │ │ │ ├── config_init1.xml │ │ │ │ └── config_init2.xml │ │ │ ├── Ocean2 │ │ │ │ ├── config_adjust_ssh.xml │ │ │ │ ├── config_driver.xml │ │ │ │ ├── config_forward.xml │ │ │ │ ├── config_init1.xml │ │ │ │ └── config_init2.xml │ │ │ └── template_forward.xml │ │ ├── processInputGeometry.py │ │ ├── setup_Ocean0_param_study.py │ │ ├── template_Ocean0_param_study.xml │ │ ├── template_adjust_ssh.xml │ │ ├── template_forward.xml │ │ ├── template_init.xml │ │ ├── update_evaporationFlux.py │ │ └── viz │ │ │ ├── computeAndPlotResults.py │ │ │ ├── computeBarotropicStreamfunction.py │ │ │ ├── computeMISOMIPInterpCoeffs.py │ │ │ ├── computeOverturningStreamfunction.py │ │ │ ├── interpMISOMIPResults.py │ │ │ ├── plotMeltFluxes.py │ │ │ └── plotResults.py │ ├── iterative_ssh_landIcePressure_scripts │ │ ├── iterate_init.py │ │ └── plot_cart_ssh_landIcePressure.py │ ├── lock_exchange │ │ ├── 0.5km │ │ │ └── default │ │ │ │ ├── config_driver.xml │ │ │ │ ├── config_forward.xml │ │ │ │ ├── config_init1.xml │ │ │ │ └── config_init2.xml │ │ └── 16km │ │ │ └── default │ │ │ ├── config_driver.xml │ │ │ ├── config_forward.xml │ │ │ ├── config_init1.xml │ │ │ └── config_init2.xml │ ├── overflow │ │ └── 10km │ │ │ └── default │ │ │ ├── .gitignore │ │ │ ├── config_driver.xml │ │ │ ├── config_forward.xml │ │ │ ├── config_init1.xml │ │ │ └── config_init2.xml │ ├── periodic_planar │ │ └── 20km │ │ │ ├── default_light │ │ │ ├── config_driver.xml │ │ │ ├── config_forward.xml │ │ │ ├── config_init1.xml │ │ │ └── config_init2.xml │ │ │ ├── region_reset_light_test │ │ │ ├── config_driver.xml │ │ │ ├── config_forward.xml │ │ │ ├── config_init1.xml │ │ │ └── config_init2.xml │ │ │ └── time_reset_light_test │ │ │ ├── config_driver.xml │ │ │ ├── config_forward.xml │ │ │ ├── config_init1.xml │ │ │ └── config_init2.xml │ ├── regression_suites │ │ ├── land_ice_fluxes.xml │ │ ├── light.xml │ │ └── nightly.xml │ ├── scripts │ │ └── plot_globalStats.py │ ├── sea_mount │ │ └── 6.7km │ │ │ ├── .gitignore │ │ │ ├── default │ │ │ ├── config_driver.xml │ │ │ ├── config_forward.xml │ │ │ ├── config_init1.xml │ │ │ └── config_init2.xml │ │ │ └── template_forward.xml │ ├── single_column_model │ │ ├── planar │ │ │ └── cvmix_test │ │ │ │ ├── config_driver.xml │ │ │ │ ├── config_forward.xml │ │ │ │ └── config_init.xml │ │ └── sphere │ │ │ └── cvmix_test │ │ │ ├── config_driver.xml │ │ │ ├── config_forward.xml │ │ │ └── config_init.xml │ ├── soma │ │ ├── 16km │ │ │ ├── 3layer │ │ │ │ ├── config_driver.xml │ │ │ │ ├── config_forward.xml │ │ │ │ ├── config_init1.xml │ │ │ │ └── config_init2.xml │ │ │ ├── default │ │ │ │ ├── config_driver.xml │ │ │ │ ├── config_forward.xml │ │ │ │ ├── config_init1.xml │ │ │ │ └── config_init2.xml │ │ │ └── surface_restoring │ │ │ │ ├── config_driver.xml │ │ │ │ ├── config_forward.xml │ │ │ │ ├── config_init1.xml │ │ │ │ └── config_init2.xml │ │ ├── 32km │ │ │ ├── 3layer │ │ │ │ ├── config_driver.xml │ │ │ │ ├── config_forward.xml │ │ │ │ ├── config_init1.xml │ │ │ │ └── config_init2.xml │ │ │ ├── default │ │ │ │ ├── config_driver.xml │ │ │ │ ├── config_forward.xml │ │ │ │ ├── config_init1.xml │ │ │ │ └── config_init2.xml │ │ │ └── surface_restoring │ │ │ │ ├── config_driver.xml │ │ │ │ ├── config_forward.xml │ │ │ │ ├── config_init1.xml │ │ │ │ └── config_init2.xml │ │ ├── 4km │ │ │ ├── 32to4km │ │ │ │ ├── config_driver.xml │ │ │ │ ├── config_forward.xml │ │ │ │ ├── config_init1.xml │ │ │ │ └── config_init2.xml │ │ │ ├── 3layer │ │ │ │ ├── config_driver.xml │ │ │ │ ├── config_forward.xml │ │ │ │ ├── config_init1.xml │ │ │ │ └── config_init2.xml │ │ │ ├── default │ │ │ │ ├── config_driver.xml │ │ │ │ ├── config_forward.xml │ │ │ │ ├── config_init1.xml │ │ │ │ └── config_init2.xml │ │ │ └── surface_restoring │ │ │ │ ├── config_driver.xml │ │ │ │ ├── config_forward.xml │ │ │ │ ├── config_init1.xml │ │ │ │ └── config_init2.xml │ │ ├── 8km │ │ │ ├── 32to8km │ │ │ │ ├── config_driver.xml │ │ │ │ ├── config_forward.xml │ │ │ │ ├── config_init1.xml │ │ │ │ └── config_init2.xml │ │ │ ├── 3layer │ │ │ │ ├── config_driver.xml │ │ │ │ ├── config_forward.xml │ │ │ │ ├── config_init1.xml │ │ │ │ └── config_init2.xml │ │ │ ├── default │ │ │ │ ├── config_driver.xml │ │ │ │ ├── config_forward.xml │ │ │ │ ├── config_init1.xml │ │ │ │ └── config_init2.xml │ │ │ └── surface_restoring │ │ │ │ ├── config_driver.xml │ │ │ │ ├── config_forward.xml │ │ │ │ ├── config_init1.xml │ │ │ │ └── config_init2.xml │ │ ├── soma_analysis_members.xml │ │ ├── soma_run.xml │ │ └── soma_template.xml │ ├── sub_ice_shelf_2D │ │ └── 5km │ │ │ ├── .gitignore │ │ │ ├── Haney_number_init │ │ │ ├── config_driver.xml │ │ │ ├── config_forward.xml │ │ │ ├── config_init1.xml │ │ │ └── config_init2.xml │ │ │ ├── Haney_number_iterative_init │ │ │ ├── config_adjust_ssh.xml │ │ │ ├── config_driver.xml │ │ │ ├── config_forward.xml │ │ │ ├── config_init1.xml │ │ │ └── config_init2.xml │ │ │ ├── default │ │ │ ├── config_driver.xml │ │ │ ├── config_forward.xml │ │ │ ├── config_init1.xml │ │ │ └── config_init2.xml │ │ │ ├── iterative_init │ │ │ ├── config_adjust_ssh.xml │ │ │ ├── config_driver.xml │ │ │ ├── config_forward.xml │ │ │ ├── config_init1.xml │ │ │ └── config_init2.xml │ │ │ ├── restart_test │ │ │ ├── config_adjust_ssh.xml │ │ │ ├── config_driver.xml │ │ │ ├── config_full_run.xml │ │ │ ├── config_init1.xml │ │ │ ├── config_init2.xml │ │ │ ├── config_restart_run.xml │ │ │ └── restart_setup_template.xml │ │ │ ├── template_adjust_ssh.xml │ │ │ ├── template_forward.xml │ │ │ ├── template_init.xml │ │ │ └── with_frazil │ │ │ ├── config_adjust_ssh.xml │ │ │ ├── config_driver.xml │ │ │ ├── config_forward.xml │ │ │ ├── config_init1.xml │ │ │ └── config_init2.xml │ ├── templates │ │ ├── analysis_members │ │ │ ├── debug_diagnostics.xml │ │ │ ├── eddy_product_variables.xml │ │ │ ├── eliassen_palm.xml │ │ │ ├── global_stats.xml │ │ │ ├── global_stats_text_only.xml │ │ │ ├── high_frequency_output.xml │ │ │ ├── lagrangian_particle_tracking.xml │ │ │ ├── layer_volume_weighted_averages.xml │ │ │ ├── meridional_heat_transport.xml │ │ │ ├── mixed_layer_depths.xml │ │ │ ├── okubo_weiss.xml │ │ │ ├── surface_area_weighted_averages.xml │ │ │ ├── test_compute_interval.xml │ │ │ ├── time_filters.xml │ │ │ ├── time_series_stats.xml │ │ │ ├── water_mass_census.xml │ │ │ └── zonal_mean.xml │ │ ├── debugging.xml │ │ ├── streams │ │ │ ├── KPP_testing.xml │ │ │ ├── forcing_data.xml │ │ │ ├── frazil.xml │ │ │ ├── land_ice_fluxes.xml │ │ │ ├── minimal_output.xml │ │ │ ├── output.xml │ │ │ └── shortwave_forcing_data.xml │ │ └── validations │ │ │ ├── LIGHT_comparison.xml │ │ │ ├── LIGHT_timers.xml │ │ │ ├── ecosys_comparison.xml │ │ │ ├── frazil_comparison.xml │ │ │ ├── land_ice_flux_comparison.xml │ │ │ └── prognostic_comparison.xml │ └── ziso │ │ ├── 10km │ │ └── default │ │ │ ├── config_driver.xml │ │ │ ├── config_forward.xml │ │ │ ├── config_init1.xml │ │ │ └── config_init2.xml │ │ ├── 2.5km │ │ └── default │ │ │ ├── config_driver.xml │ │ │ ├── config_forward.xml │ │ │ ├── config_init1.xml │ │ │ └── config_init2.xml │ │ ├── 20km │ │ ├── default │ │ │ ├── config_driver.xml │ │ │ ├── config_forward.xml │ │ │ ├── config_init1.xml │ │ │ └── config_init2.xml │ │ └── with_frazil │ │ │ ├── config_driver.xml │ │ │ ├── config_forward.xml │ │ │ ├── config_init1.xml │ │ │ └── config_init2.xml │ │ ├── 5km │ │ └── default │ │ │ ├── config_driver.xml │ │ │ ├── config_forward.xml │ │ │ ├── config_init1.xml │ │ │ └── config_init2.xml │ │ ├── ziso_analysis_members.xml │ │ ├── ziso_run.xml │ │ └── ziso_template.xml ├── runtime_definitions │ ├── mpirun.xml │ └── srun.xml ├── setup_testcase.py ├── test │ ├── basic_spherical │ │ └── 960km │ │ │ ├── .gitignore │ │ │ └── default │ │ │ ├── config_driver.xml │ │ │ └── config_test.xml │ └── example_regression_suite.xml └── utility_scripts │ ├── check_progress.py │ ├── compare_fields.py │ ├── compare_timers.py │ ├── make_graph_file.py │ ├── make_parameter_study_configs.py │ └── setup_restart.py └── seaice ├── configurations ├── standard_bgc │ ├── namelist.seaice │ └── streams.seaice ├── standard_physics │ ├── README │ ├── namelist.seaice │ └── streams.seaice └── standard_physics_single_cell │ ├── namelist.seaice │ └── streams.seaice └── testing ├── .gitignore ├── README ├── compare_mpas_files.py ├── test_mpas-seaice.py ├── testing_utils.py ├── tests ├── parallelism.py ├── regression.py └── 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