├── .dockerignore ├── .gitignore ├── Dockerfile ├── FAIRshake ├── __init__.py ├── settings.py ├── urls.py └── wsgi.py ├── FAIRshakeAPI ├── __init__.py ├── admin.py ├── apps.py ├── assessments │ ├── README.md │ ├── __init__.py │ ├── base │ │ └── __init__.py │ └── json-ld │ │ └── __init__.py ├── filters.py ├── forms.py ├── functions.py ├── lookups.py ├── migrations │ ├── 0001_initial.py │ ├── 0002_auto_20180817_1705.py │ ├── 0003_auto_20180817_2112.py │ ├── 0004_auto_20180823_1910.py │ ├── 0005_auto_20180917_1713.py │ ├── 0006_remove_digitalobject_fairsharing.py │ ├── 0007_auto_20180924_1435.py │ ├── 0008_auto_20181210_2142.py │ ├── 0009_auto_20181210_2152.py │ ├── 0010_remove_answer_answer_tmp.py │ ├── 0011_auto_20190103_1913.py │ ├── 0012_assessment_published.py │ ├── 0013_auto_20200312_1930.py │ ├── 0014_auto_20241017_1535.py │ └── __init__.py ├── models.py ├── permissions.py ├── search.py ├── serializers.py ├── stats.py ├── tests.py ├── urls.py ├── util.py └── views.py ├── FAIRshakeHub ├── __init__.py ├── apps.py ├── lookups.py ├── static │ ├── file │ │ ├── FAIRShake_chrext.zip │ │ ├── FAIRshakeUserGuide.pdf │ │ ├── FAIRshakeUserGuide │ │ │ ├── files │ │ │ │ ├── colorschememapping.xml │ │ │ │ ├── filelist.xml │ │ │ │ ├── image001.png │ │ │ │ ├── image002.jpg │ │ │ │ ├── image003.png │ │ │ │ ├── image004.jpg │ │ │ │ ├── image005.jpg │ │ │ │ ├── image006.png │ │ │ │ ├── image007.jpg │ │ │ │ ├── image008.png │ │ │ │ ├── image009.jpg │ │ │ │ ├── image010.png │ │ │ │ ├── image011.jpg │ │ │ │ ├── image012.png │ │ │ │ ├── image013.jpg │ │ │ │ ├── image014.png │ │ │ │ ├── image015.jpg │ │ │ │ ├── image016.png │ │ │ │ ├── image017.jpg │ │ │ │ ├── image018.png │ │ │ │ ├── image019.jpg │ │ │ │ ├── image020.png │ │ │ │ ├── image021.jpg │ │ │ │ ├── image022.png │ │ │ │ ├── image023.png │ │ │ │ ├── image024.png │ │ │ │ ├── image025.jpg │ │ │ │ ├── image026.png │ │ │ │ ├── image027.jpg │ │ │ │ ├── image028.png │ │ │ │ ├── image029.jpg │ │ │ │ ├── image030.png │ │ │ │ ├── image031.jpg │ │ │ │ ├── image032.png │ │ │ │ ├── image033.jpg │ │ │ │ ├── image034.png │ │ │ │ ├── image035.jpg │ │ │ │ ├── image036.png │ │ │ │ ├── image037.jpg │ │ │ │ ├── image038.png │ │ │ │ ├── image039.jpg │ │ │ │ ├── image040.png │ │ │ │ ├── image041.jpg │ │ │ │ ├── image042.png │ │ │ │ ├── image043.jpg │ │ │ │ ├── image044.png │ │ │ │ ├── image045.jpg │ │ │ │ ├── image046.png │ │ │ │ ├── image047.jpg │ │ │ │ ├── image048.png │ │ │ │ ├── image049.jpg │ │ │ │ ├── image050.png │ │ │ │ ├── image051.jpg │ │ │ │ ├── image052.png │ │ │ │ ├── image053.jpg │ │ │ │ ├── image054.jpg │ │ │ │ ├── image055.png │ │ │ │ ├── image056.png │ │ │ │ └── themedata.thmx │ │ │ └── index.html │ │ └── NIH-CFDE-FAIR-Cookbook.pdf │ ├── image │ │ ├── CFDE_logo-color-web.png │ │ ├── digital_object.png │ │ ├── example │ │ │ ├── bookmarklet1.png │ │ │ ├── bookmarklet2.png │ │ │ ├── bookmarklet3.png │ │ │ ├── chrome_extension1.png │ │ │ ├── chrome_extension2.png │ │ │ └── chrome_extension3.png │ │ ├── favicon.ico │ │ ├── icon-32.png │ │ ├── insignia-anatomy.png │ │ ├── partners │ │ │ ├── commonfund.png │ │ │ ├── deloitte.svg │ │ │ ├── dockstore.png │ │ │ ├── elixir.png │ │ │ ├── gofair.svg │ │ │ ├── maastricht.svg │ │ │ ├── miami.png │ │ │ ├── mssm.png │ │ │ ├── oregonstate.svg │ │ │ ├── oxford.jpg │ │ │ └── renci.png │ │ ├── plus.png │ │ └── socialaccount │ │ │ ├── github.png │ │ │ ├── globus.png │ │ │ └── orcid.png │ ├── scripts │ │ ├── bookmarklet.js │ │ ├── insignia.dev.js │ │ └── insignia.js │ └── style │ │ ├── base.css │ │ └── providers.css ├── templates │ ├── base.html │ ├── fairshake │ │ ├── analytics.html │ │ ├── assessment │ │ │ ├── element.html │ │ │ ├── list.html │ │ │ ├── perform.html │ │ │ ├── prepare.html │ │ │ └── retrieve.html │ │ ├── base.html │ │ ├── bookmarklet.html │ │ ├── bookmarklet.js │ │ ├── chrome_extension.html │ │ ├── contributors_and_partners.html │ │ ├── documentation │ │ │ ├── index.html │ │ │ └── jsonschema.html │ │ ├── error.html │ │ ├── framed.html │ │ ├── generic │ │ │ ├── add.html │ │ │ ├── assessments.html │ │ │ ├── create.html │ │ │ ├── element-offset.html │ │ │ ├── element.html │ │ │ ├── list.html │ │ │ ├── modify.html │ │ │ ├── page.html │ │ │ ├── page_nav.html │ │ │ ├── retrieve.html │ │ │ ├── retrieve_element.html │ │ │ └── stats.html │ │ ├── index.html │ │ ├── jsonld.html │ │ ├── privacy_policy.html │ │ └── terms_of_service.html │ └── rest_framework │ │ └── base.html ├── templatetags │ ├── __init__.py │ ├── filters.py │ └── settings.py ├── tests.py ├── urls.py └── views.py ├── LICENSE ├── README.md ├── boot.sh ├── docker-compose.yml ├── extensions ├── __init__.py ├── ajax_select_ex │ ├── __init__.py │ └── templates │ │ └── ajax_select │ │ ├── autocompleteselect.html │ │ └── autocompleteselectmultiple.html ├── allauth_ex │ ├── __init__.py │ ├── templates │ │ ├── account │ │ │ ├── api_access.html │ │ │ ├── base.html │ │ │ ├── delete.html │ │ │ ├── email.html │ │ │ ├── email_confirm.html │ │ │ ├── login.html │ │ │ ├── logout.html │ │ │ ├── password_change.html │ │ │ ├── password_reset.html │ │ │ ├── password_reset_from_key.html │ │ │ ├── password_set.html │ │ │ └── signup.html │ │ └── socialaccount │ │ │ ├── connections.html │ │ │ └── signup.html │ ├── urls.py │ └── views.py ├── django │ └── union_paginator.py ├── drf_yasg_ex │ ├── __init__.py │ ├── schema.py │ ├── urls.py │ └── views.py ├── rest_auth_ex │ ├── __init__.py │ ├── registration │ │ ├── __init__.py │ │ ├── urls.py │ │ └── views.py │ ├── urls.py │ └── views.py └── rest_framework_ex │ ├── __init__.py │ ├── exeptions.py │ └── routers.py ├── manage.py ├── requirements.txt └── scripts ├── colors.py ├── db.py ├── dbGap_assessment.py ├── dockstore_assessment.py ├── from_fairsharing_to_fairshake.py ├── from_harmonizome_to_fairshake.py ├── linear_map.py ├── merging.py ├── migrate_from_jam.py ├── migrate_from_old_db.py ├── resolve_duplicates.py ├── smartAPI_assessment.py ├── tutorial-coreapi.ipynb └── tutorial-pyswaggerclient.ipynb /.dockerignore: 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