├── .dockerignore ├── .env.example ├── .eslintrc.json ├── .gitignore ├── Dockerfile ├── Dockerfile.next ├── LICENSE ├── README.md ├── app ├── ThemeRegistry.tsx ├── [page] │ ├── [subpage] │ │ └── page.tsx │ └── page.tsx ├── api │ ├── counter │ │ ├── route.ts │ │ └── update │ │ │ └── route.ts │ ├── distillery │ │ ├── disease2exrna │ │ │ └── route.ts │ │ ├── drug2exrna │ │ │ └── route.ts │ │ ├── exrnadisease │ │ │ └── route.ts │ │ ├── exrnadrug │ │ │ └── route.ts │ │ ├── genes │ │ │ └── route.ts │ │ ├── gtex_tissue │ │ │ └── route.ts │ │ ├── mw │ │ │ └── route.ts │ │ ├── mw_diseases │ │ │ └── route.ts │ │ └── tissue2drugs │ │ │ └── route.ts │ ├── docs │ │ └── route.ts │ ├── enrichment │ │ ├── augment │ │ │ ├── helper.ts │ │ │ └── route.ts │ │ ├── get_regex │ │ │ ├── helper.ts │ │ │ └── route.ts │ │ ├── helper.ts │ │ ├── node_mapping │ │ │ ├── helper.ts │ │ │ └── route.ts │ │ ├── route.ts │ │ └── terms_and_genes │ │ │ └── route.ts │ ├── initialize │ │ ├── helper.ts │ │ └── route.ts │ ├── knowledge_graph │ │ ├── all │ │ │ └── route.ts │ │ ├── helper.ts │ │ ├── node_search │ │ │ └── route.ts │ │ ├── resolver.ts │ │ ├── route.ts │ │ ├── search_properties │ │ │ └── route.ts │ │ └── term_search │ │ │ └── route.ts │ ├── revalidate │ │ └── route.ts │ └── schema │ │ └── route.ts ├── component_selector.tsx ├── global.css ├── layout.tsx └── page.tsx ├── cli ├── version-compose.py └── version-compose.ts ├── components ├── APIDoc │ ├── index.tsx │ └── react-swagger.tsx ├── ConsentCookie.tsx ├── Counter.tsx ├── Cytoscape │ └── index.tsx ├── Distillery │ ├── AsyncForm.tsx │ ├── DistilleryUseCase.tsx │ ├── Form.tsx │ └── index.tsx ├── Download │ ├── client_side.tsx │ ├── edge_only.tsx │ ├── index.tsx │ └── node_and_edges.tsx ├── Enrichment │ ├── EnrichmentBar.tsx │ ├── EnrichrTermSearch.tsx │ ├── InteractiveButtons.tsx │ ├── LibraryPicker.tsx │ ├── NetworkTable.tsx │ ├── Summarizer │ │ ├── Client.tsx │ │ └── index.tsx │ ├── TermViz.tsx │ ├── element_resolver.ts │ ├── form.tsx │ └── index.tsx ├── Footer │ └── index.tsx ├── Header │ ├── SmallNav.tsx │ ├── TextNav.tsx │ ├── buttons.tsx │ └── index.tsx ├── MarkdownComponent │ └── index.tsx ├── QueryTranslator.tsx ├── SanitizedHTML.tsx ├── SimpleTermAndGeneSearch │ ├── async_form.tsx │ ├── async_form_group.tsx │ ├── buttons.tsx │ ├── form.tsx │ ├── index.tsx │ └── network_table.tsx ├── Subheader │ └── index.tsx ├── TermAndGeneSearch │ ├── async_form.tsx │ ├── buttons.tsx │ ├── form.tsx │ ├── index.tsx │ ├── network_table.tsx │ └── tooltip.tsx ├── Tutorial.mdx ├── declaration.d.ts └── misc │ ├── ConsentCookie.tsx │ ├── client_side.tsx │ ├── github.tsx │ ├── index.tsx │ ├── logo.tsx │ └── social.tsx ├── deployer ├── docker-compose-legacy.yml ├── docker-compose-lncrnalyzr.yml ├── docker-compose-template-offline.yml ├── docker-compose-template-v5-offline.yml ├── docker-compose-template.yml ├── docker-compose-v5-template.yml ├── docker-compose.yml ├── entrypoint.sh ├── mdx-components.tsx ├── next-env.d.ts ├── next.config.mjs ├── package.json ├── postcss.config.js ├── public ├── favicon.ico ├── img │ ├── Facebook.svg │ ├── Linkedin.svg │ ├── Twitter.svg │ ├── Youtube.svg │ └── email.svg ├── markdown │ ├── download.md │ └── download_reprotox.md ├── reprotox_schema.json ├── schema.example.json ├── schema.json ├── scripts │ ├── populate_from_s3.py │ └── requirements.txt ├── static │ ├── icons │ │ ├── CFDE-logo.png │ │ ├── appyter.png │ │ ├── assay.png │ │ ├── birthdefect.png │ │ ├── cells.png │ │ ├── datasets.png │ │ ├── drugs.png │ │ ├── exrna.png │ │ ├── flaticon.png │ │ ├── gene.png │ │ ├── glycosylations.png │ │ ├── knowledge_graph.png │ │ ├── kx-logo.png │ │ ├── metabolites.png │ │ ├── portal.png │ │ ├── researcher.png │ │ ├── scg.png │ │ ├── tool.png │ │ └── variant.png │ └── resources │ │ ├── HMP.jpeg │ │ ├── HMP.png │ │ ├── archs.png │ │ ├── biogrid.jpg │ │ ├── biogrid.png │ │ ├── exrna.png │ │ ├── glycoscience.png │ │ ├── glycoscience.svg │ │ ├── glygen.png │ │ ├── gtex.png │ │ ├── hubmap.png │ │ ├── idg.png │ │ ├── kidsfirst.jpg │ │ ├── kidsfirst.png │ │ ├── lincs.gif │ │ ├── lincslogo.svg │ │ ├── metabolomics.jpeg │ │ ├── metabolomics.png │ │ ├── motrpac.jpeg │ │ ├── motrpac.png │ │ └── sparc.png ├── tutorial │ ├── dd-1.png │ ├── dd-2.png │ ├── dd-3.png │ ├── dd-4.png │ ├── dd-5.png │ ├── dd-6.png │ └── dd-7.png └── vercel.svg ├── scripts ├── ingestion │ ├── Dockerfile │ ├── converter.py │ ├── import_csv.py │ ├── indexing.py │ ├── ingest.sh │ ├── populate.py │ ├── rapid_populate.py │ ├── requirements.txt │ └── validation.py └── neo4j │ ├── populate.py │ └── requirements.txt ├── styles ├── Home.module.css ├── globals.css └── kg.css ├── tailwind.config.ts ├── themes ├── cfde.ts ├── enrichr-kg.ts ├── harmonizome-kg.ts └── lncRNAlyzr.ts ├── tsconfig.json ├── typings └── mdx.d.ts └── utils ├── client_side.ts ├── colors.ts ├── helper.ts ├── initialize.ts ├── math.ts ├── neo4j.ts └── swagger.ts /.dockerignore: 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