├── README.md └── scripts ├── 0_gene_list.ipynb ├── 0_process_data MJ-Irina.ipynb ├── 2_train_cycleGAN_cp.ipynb ├── Gene_weights_L1000.ipynb ├── L1000_to_RNAseq_pipeline.ipynb ├── L1000_to_RNAseq_pipeline_training.ipynb ├── Preprocess_data_ARCHS4.ipynb ├── Preprocess_data_GTEx.ipynb ├── Preprocess_data_L1000.ipynb ├── RNAseq_L1000_classifier.ipynb ├── [Evaluation] Find Cell Line Samples in ARCHS4 for each Cell Line.ipynb ├── [Evaluation] Preprocessing Selected L1000 ARCHS4 samples.ipynb ├── [Evaluation] predict_gtex.ipynb ├── [Evaluation] scatter_plot_samples.ipynb ├── [Evaluation] signature_generator_MoA.py ├── [Evaluation] signature_generator_dexamethasone.ipynb ├── [Evaluation] tSNE_gtex.ipynb └── functions ├── cyclegan_transcript.py ├── delete.py ├── extrapolation_transcript.py ├── models_transcript.py ├── preprocessing_input_data.py └── utils.py /README.md: -------------------------------------------------------------------------------- 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/scripts/RNAseq_L1000_classifier.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MaayanLab/L1000toRNAseq/HEAD/scripts/RNAseq_L1000_classifier.ipynb -------------------------------------------------------------------------------- /scripts/[Evaluation] Find Cell Line Samples in ARCHS4 for each Cell Line.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MaayanLab/L1000toRNAseq/HEAD/scripts/[Evaluation] Find Cell Line Samples in ARCHS4 for each Cell Line.ipynb -------------------------------------------------------------------------------- /scripts/[Evaluation] Preprocessing Selected L1000 ARCHS4 samples.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MaayanLab/L1000toRNAseq/HEAD/scripts/[Evaluation] Preprocessing Selected L1000 ARCHS4 samples.ipynb 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