├── .dockerignore ├── .gitignore ├── Dockerfile ├── Dockerfile.kallisto ├── README.dockerhub.md ├── README.md ├── RNAseq.py ├── Zika.ipynb ├── analyze_fastq.sh ├── analyze_fastq_kallisto.sh ├── analyze_sra.sh ├── analyze_sra_kallisto.sh ├── img ├── combined-dn_ChEA.png ├── combined-dn_KEGG.png ├── combined-up_MGI4.png ├── zika-drug-mimickers.png └── zika-drug-reversers.png ├── normalize.R ├── notebook.sh ├── plots.py └── requirements.txt /.dockerignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MaayanLab/Zika-RNAseq-Pipeline/HEAD/.dockerignore -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- 1 | *.pyc 2 | .ipynb_checkpoints 3 | .Rhistory 4 | *.tar.gz 5 | genomes/ 6 | data/ 7 | *.log 8 | -------------------------------------------------------------------------------- /Dockerfile: 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