├── .gitignore ├── CODE_OF_CONDUCT.md ├── LICENSE ├── README.md ├── contribute ├── README.md ├── data │ ├── example_dataset.txt │ ├── example_metadata.txt │ └── workflow.png ├── python3_notebook.ipynb └── r_notebook.ipynb ├── library ├── analysis_tools │ ├── clustergrammer │ │ ├── README.md │ │ ├── clustergrammer.py │ │ ├── clustergrammer_metadata.json │ │ └── img │ │ │ ├── clustergrammer-example.png │ │ │ └── clustergrammer-icon.png │ ├── enrichr │ │ ├── README.md │ │ ├── enrichr.py │ │ ├── enrichr_metadata.json │ │ └── img │ │ │ ├── enrichr-example.png │ │ │ └── enrichr-icon.png │ ├── gene_clustering_heatmap │ │ ├── README.md │ │ ├── gene_clustering_heatmap.py │ │ └── gene_clustering_heatmap_metadata.json │ ├── go_enrichment │ │ ├── README.md │ │ ├── go_enrichment.py │ │ ├── go_enrichment_metadata.json │ │ └── img │ │ │ ├── go_enrichment-example.png │ │ │ ├── go_enrichment-icon.png │ │ │ └── go_enrichment-old.png │ ├── kinase_enrichment │ │ ├── README.md │ │ ├── img │ │ │ ├── kinase_enrichment-example.png │ │ │ └── kinase_enrichment-icon.png │ │ ├── kinase_enrichment.py │ │ └── kinase_enrichment_metadata.json │ ├── l1000cds2 │ │ ├── README.md │ │ ├── img │ │ │ ├── l1000cds2-example.png │ │ │ └── l1000cds2-icon.png │ │ ├── l1000cds2.py │ │ └── l1000cds2_metadata.json │ ├── l1000fwd │ │ ├── README.md │ │ ├── img │ │ │ ├── l1000fwd-example.png │ │ │ └── l1000fwd-icon.png │ │ ├── l1000fwd.py │ │ └── l1000fwd_metadata.json │ ├── library_size_analysis │ │ ├── README.md │ │ ├── img │ │ │ ├── library_size_analysis-example.png │ │ │ └── library_size_analysis-icon.png │ │ ├── library_size_analysis.py │ │ └── library_size_analysis_metadata.json │ ├── ma_plot │ │ ├── README.md │ │ ├── img │ │ │ ├── ma_plot-example.png │ │ │ └── ma_plot-icon.png │ │ ├── ma_plot.py │ │ └── ma_plot_metadata.json │ ├── mirna_enrichment │ │ ├── README.md │ │ ├── img │ │ │ ├── mirna_enrichment-example.png │ │ │ └── mirna_enrichment-icon.png │ │ ├── mirna_enrichment.py │ │ └── mirna_enrichment_metadata.json │ ├── pathway_enrichment │ │ ├── README.md │ │ ├── img │ │ │ ├── pathway_enrichment-example.png │ │ │ └── pathway_enrichment-icon.png │ │ ├── pathway_enrichment.py │ │ └── pathway_enrichment_metadata.json │ ├── pca │ │ ├── README.md │ │ ├── img │ │ │ ├── pca-example copy.png │ │ │ ├── pca-example.png │ │ │ └── pca-icon.png │ │ ├── pca.py │ │ └── pca_metadata.json │ ├── sample_clustering_heatmap │ │ ├── README.md │ │ ├── sample_clustering_heatmap.py │ │ └── sample_clustering_heatmap_metadata.json │ ├── signature_table │ │ ├── README.md │ │ ├── img │ │ │ ├── signature_table-example.png │ │ │ └── signature_table-icon.png │ │ ├── signature_table.py │ │ └── signature_table_metadata.json │ ├── tf_enrichment │ │ ├── README.md │ │ ├── img │ │ │ ├── tf_enrichment-example.png │ │ │ └── tf_enrichment-icon.png │ │ ├── tf_enrichment.py │ │ └── tf_enrichment_metadata.json │ ├── tsne │ │ ├── README.md │ │ ├── img │ │ │ └── tsne-icon.png │ │ ├── tsne.py │ │ └── 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