├── LICENSE ├── README.md ├── examples ├── PDB │ ├── Zm00001eb057210_P001.pdb │ ├── Zm00001eb057210_P002.pdb │ ├── Zm00001eb057210_P003.pdb │ └── Zm00001eb067740_P001.pdb ├── annotations.tsv ├── dssp_tmp │ ├── Zm00001eb057210_P001_output │ ├── Zm00001eb057210_P002_output │ ├── Zm00001eb057210_P003_output │ └── Zm00001eb067740_P001_output ├── gene_model.gff ├── gwas_snp.gff.tsv ├── msa │ ├── maize_pan01347 │ └── maize_pan03621 ├── proteins.fasta └── proteins_interproscan.tsv ├── figures ├── Figure1.png ├── Figure2.png ├── Figure3.png ├── Figure4.png ├── Figure5.png └── out.dssp ├── python ├── create_domains_from_hmmer.py ├── create_trait_file.py ├── format_pan_heatmap.py ├── format_pan_query.py ├── format_pan_target.py ├── make_gene_model_annotation_files.py ├── make_pfam_files.py ├── make_trait_tsv_files.py ├── process_dssp_tsv.py └── split_esm_output_for_website.py ├── scripts └── make_dssp_files.sh └── website ├── css └── main.css ├── csv └── Zm00001eb057210_P001.csv ├── dssp └── 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