├── .DS_Store ├── ITPs ├── README.md ├── martini_v3.0.0.itp ├── martini_v3.0.0_DOTAP_v2.itp ├── martini_v3.0.0_ceramides_v2.itp ├── martini_v3.0.0_diglycerides_v2.itp ├── martini_v3.0.0_etherphospholipids_PA_v2.itp ├── martini_v3.0.0_etherphospholipids_PC_v2.itp ├── martini_v3.0.0_etherphospholipids_PE_v2.itp ├── martini_v3.0.0_etherphospholipids_PG_v2.itp ├── martini_v3.0.0_etherphospholipids_PS_v2.itp ├── martini_v3.0.0_fattyacids_v2.itp ├── martini_v3.0.0_ffbonded_v2.itp ├── martini_v3.0.0_hydrocarbons_v2.itp ├── martini_v3.0.0_ions_v1.itp ├── martini_v3.0.0_monoglycerides_v2.itp ├── martini_v3.0.0_phospholipids_2,2-BMP_v2.itp ├── martini_v3.0.0_phospholipids_3,3-BMP_v2.itp ├── martini_v3.0.0_phospholipids_CL_v2.itp ├── martini_v3.0.0_phospholipids_PA_v2.itp ├── martini_v3.0.0_phospholipids_PC_v2.itp ├── martini_v3.0.0_phospholipids_PE_v2.itp ├── martini_v3.0.0_phospholipids_PG_v2.itp ├── martini_v3.0.0_phospholipids_PI_v2.itp ├── martini_v3.0.0_phospholipids_PS_v2.itp ├── martini_v3.0.0_phospholipids_SM_v2.itp ├── martini_v3.0.0_plasmalogens_PA_v2.itp ├── martini_v3.0.0_plasmalogens_PC_v2.itp ├── martini_v3.0.0_plasmalogens_PE_v2.itp ├── martini_v3.0.0_plasmalogens_PG_v2.itp ├── martini_v3.0.0_plasmalogens_PS_v2.itp ├── martini_v3.0.0_solvents_v1.itp ├── martini_v3.0.0_sterols_v1.itp └── martini_v3.0.0_triglycerides_v2.itp ├── LICENSE.txt ├── Martini_lipid_Benchmark ├── README.md ├── figure1_2dc_data.csv ├── figure1_apl_data.csv ├── figure1_db_data.csv ├── figure1_dhh_data.csv ├── martini_benchmark.pdf ├── martini_benchmark_2dc.csv ├── martini_benchmark_apl.csv ├── martini_benchmark_db.csv └── martini_benchmark_dhh.csv ├── README.md ├── autobuild-lipid-properties.xlsx └── tools ├── CG-Martini-lipids-naming.xlsx ├── README.md ├── analysis_pipeline ├── .DS_Store ├── analysis_lipids.py ├── area_lipid_g5.py ├── diffusion.py ├── do_order_module_itp.py ├── martini_electrons-M2.dat ├── martini_electrons.dat └── qwrap.py ├── generate-from-table-v02.py ├── 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