├── LICENSE ├── Mistic_code ├── app.py ├── code │ ├── apply_theme.py │ ├── image_tSNE_GUI │ │ ├── current_package_versions.txt │ │ ├── desc.html │ │ ├── descMontage.html │ │ ├── descSM1.html │ │ ├── main.py │ │ ├── main_old.py │ │ ├── static │ │ │ └── image_tsne_tils_all_3_rot.png │ │ └── templates │ │ │ └── index.html │ ├── mistic.sh │ ├── output_tiles │ │ └── test.txt │ └── user_inputs │ │ ├── figures │ │ └── .gitkeep │ │ └── metadata │ │ ├── CODEX │ │ ├── Marker_ids.csv │ │ └── markers.csv │ │ ├── CyCIF │ │ ├── Marker_ids.csv │ │ └── markers.csv │ │ ├── Vectra │ │ ├── Cluster_categories.csv │ │ ├── Marker_ids.csv │ │ ├── Patient_ids.csv │ │ ├── Response_categories.csv │ │ ├── Treatment_categories.csv │ │ ├── X_imagetSNE.csv │ │ └── markers.csv │ │ └── t-CyCIF │ │ ├── Marker_ids.csv │ │ └── markers.csv ├── color_scatter.html ├── image.html ├── theme.yaml └── title.html ├── Readme.md └── fig_readme ├── Figure_2.jpg └── GUI_Mistic.png /LICENSE: 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