├── .gitignore ├── README.md ├── chap04 ├── demo-modify-mcmc_settings.R ├── demo-modify-mcmc_settings.py ├── fig4-1.R ├── fig4-1.py ├── fig4-2.R ├── fig4-7-left.R ├── fig4-7-left.py ├── fig4-7-right.R ├── fig4-7-right.py ├── fig4-8.R ├── fig4-8.py ├── fig4-8b.R ├── fig4-8b.py ├── input │ └── data-salary.csv ├── model │ ├── model4-4.stan │ └── model4-4b.stan ├── output │ ├── fig4-1.png │ ├── fig4-1.py.png │ ├── fig4-2-left.png │ ├── fig4-2-right.png │ ├── fig4-2.png │ ├── fig4-3.png │ ├── fig4-4.png │ ├── fig4-7-left.png │ ├── fig4-7-left.py.png │ ├── fig4-7-right.png │ ├── fig4-7-right.py.png │ ├── fig4-7.png │ ├── fig4-8-left.png │ ├── fig4-8-left.py.png │ ├── fig4-8-right.png │ ├── fig4-8-right.py.png │ ├── fig4-8.png │ ├── fig4-8b-left.png │ ├── fig4-8b-left.py.png │ ├── fig4-8b-right.png │ └── fig4-8b-right.py.png ├── run-model4-4.R └── run-model4-4.py ├── chap05 ├── fig5-1.R ├── fig5-1.py ├── fig5-2-left.R ├── fig5-2-left.py ├── fig5-2-right.R ├── fig5-2-right.py ├── fig5-3.R ├── fig5-3.py ├── fig5-4.R ├── fig5-4.py ├── fig5-5.R ├── fig5-5.py ├── fig5-7-left.R ├── fig5-7-left.py ├── fig5-7-right.R ├── fig5-7-right.py ├── input │ ├── data-shopping-1.csv │ ├── data-shopping-2.csv │ ├── data-shopping-3.csv │ └── data-shopping-4.csv ├── model │ ├── for_fig5-2-left.stan │ ├── model5-3.stan │ ├── model5-4.stan │ ├── model5-5.stan │ ├── model5-5b.stan │ ├── model5-6.stan │ ├── model5-6b.stan │ └── model5-7.stan ├── output │ ├── fig5-1.png │ ├── fig5-1.py.png │ ├── fig5-2-left.png │ ├── fig5-2-left.py.png │ ├── fig5-2-middle.png │ ├── fig5-2-right.png │ ├── fig5-2-right.py.png │ ├── fig5-2.png │ ├── fig5-3-left.png │ ├── fig5-3-left.py.png │ ├── fig5-3-right.png │ ├── fig5-3-right.py.png │ ├── fig5-3.png │ ├── fig5-4.png │ ├── fig5-4.py.png │ ├── fig5-5.png │ ├── fig5-5.py.png │ ├── fig5-7-left.png │ ├── fig5-7-left.py.png │ ├── fig5-7-right.png │ ├── fig5-7-right.py.png │ └── fig5-7.png ├── run-model5-3.R ├── run-model5-3.py ├── run-model5-4.R ├── run-model5-4.py ├── run-model5-5.R ├── run-model5-5.py ├── run-model5-6.R ├── run-model5-6.py ├── run-model5-7.R └── run-model5-7.py ├── chap06 ├── fig6-1.R ├── fig6-10.R ├── fig6-11.R ├── fig6-12.R ├── fig6-13.R ├── fig6-14.R ├── fig6-15.R ├── fig6-16.R ├── fig6-2.R ├── fig6-3.R ├── fig6-4.R ├── fig6-5.R ├── fig6-6.R ├── fig6-7.R ├── fig6-8.R ├── fig6-9.R ├── input │ └── data-mvn.csv ├── model │ ├── model6-5.stan │ └── model6-5b.stan ├── output │ ├── fig6-1.png │ ├── fig6-10.png │ ├── fig6-11.png │ ├── fig6-12-left.png │ ├── fig6-12-right.png │ ├── fig6-12.png │ ├── fig6-13.png │ ├── fig6-14.png │ ├── fig6-15.png │ ├── fig6-16.png │ ├── fig6-2.png │ ├── fig6-3.png │ ├── fig6-4-left.png │ ├── fig6-4-right.png │ ├── fig6-4.png │ ├── fig6-5.png │ ├── fig6-6-left-bottom.png │ ├── fig6-6-left-top.png │ ├── fig6-6-right-bottom.png │ ├── fig6-6-right-top.png │ ├── fig6-6.png │ ├── fig6-7.png │ ├── fig6-8.png │ ├── fig6-9-left.png │ ├── fig6-9-right.png │ └── fig6-9.png └── run-model6-5.R ├── chap07 ├── fig7-1.R ├── fig7-1.py ├── fig7-10.R ├── fig7-10.py ├── fig7-11-left.R ├── fig7-11-left.py ├── fig7-11-right.R ├── fig7-11-right.py ├── fig7-2-left.R ├── fig7-2-left.py ├── fig7-2-right.R ├── fig7-2-right.py ├── fig7-3-left.R ├── fig7-3-left.py ├── fig7-3-right.R ├── fig7-3-right.py ├── fig7-4-left.R ├── fig7-4-left.py ├── fig7-4-right.R ├── fig7-4-right.py ├── fig7-5-left.R ├── fig7-5-left.py ├── fig7-5-right.R ├── fig7-5-right.py ├── fig7-6-left.R ├── fig7-6-left.py ├── fig7-6-right.R ├── fig7-6-right.py ├── fig7-7.R ├── fig7-8.R ├── fig7-8.py ├── generate-table-fig.R ├── input │ ├── data-50m.csv │ ├── data-conc.csv │ ├── data-outlier.csv │ ├── data-protein.csv │ ├── data-rental.csv │ └── data-sigEmax.csv ├── model │ ├── model7-1.stan │ ├── model7-2.stan │ ├── model7-3.stan │ ├── model7-4.stan │ ├── model7-5.stan │ ├── model7-6.stan │ ├── model7-7.stan │ └── model7-8.stan ├── output │ ├── fig-table1-emax.png │ ├── fig-table1-exp1.png │ ├── fig-table1-exp2.png │ ├── fig-table1-exp3.png │ ├── fig-table1-exp4.png │ ├── fig-table1-sigemax.png │ ├── fig7-1-left.png │ ├── fig7-1-left.py.png │ ├── fig7-1-right.png │ ├── fig7-1-right.py.png │ ├── fig7-1.png │ ├── fig7-10.png │ ├── fig7-10.py.png │ ├── fig7-11-left.png │ ├── fig7-11-left.py.png │ ├── fig7-11-right.png │ ├── fig7-11-right.py.png │ ├── fig7-11.png │ ├── fig7-2-left.png │ ├── fig7-2-left.py.png │ ├── fig7-2-right.png │ ├── fig7-2-right.py.png │ ├── fig7-2.png │ ├── fig7-3-left.png │ ├── fig7-3-left.py.png │ ├── fig7-3-right.png │ ├── fig7-3-right.py.png │ ├── fig7-3.png │ ├── fig7-4-left.png │ ├── fig7-4-left.py.png │ ├── fig7-4-right.png │ ├── fig7-4-right.py.png │ ├── fig7-4.png │ ├── fig7-5-left.png │ ├── fig7-5-left.py.png │ ├── fig7-5-right.png │ ├── fig7-5-right.py.png │ ├── fig7-5.png │ ├── fig7-6-left.png │ ├── fig7-6-left.py.png │ ├── fig7-6-right.png │ ├── fig7-6-right.py.png │ ├── fig7-6.png │ ├── fig7-7.png │ ├── fig7-8-left.png │ ├── fig7-8-left.py.png │ ├── fig7-8-right.png │ ├── fig7-8-right.py.png │ ├── fig7-8.png │ └── fig7-9.png ├── run-model7-1.R ├── run-model7-1.py ├── run-model7-2.R ├── run-model7-2.py ├── run-model7-3.R ├── run-model7-3.py ├── run-model7-4.R ├── run-model7-4.py ├── run-model7-5.R ├── run-model7-5.py ├── run-model7-6.R ├── run-model7-6.py ├── run-model7-7.R ├── run-model7-7.py ├── run-model7-8.R └── run-model7-8.py ├── chap08 ├── exercise │ ├── data-ex3.csv │ ├── ex3.R │ ├── ex3.py │ └── ex3.stan ├── fig8-1.R ├── fig8-1.py ├── fig8-10.R ├── fig8-10.py ├── fig8-2.R ├── fig8-2.py ├── fig8-4-left.R ├── fig8-4-left.py ├── fig8-4-right.R ├── fig8-4-right.py ├── fig8-5.R ├── fig8-5.py ├── fig8-6.R ├── fig8-6.py ├── fig8-7-left.R ├── fig8-7-left.py ├── fig8-7-right.R ├── fig8-7-right.py ├── fig8-8.R ├── fig8-8.py ├── fig8-9.R ├── fig8-9.py ├── input │ ├── data-conc-2-NA-long.csv │ ├── data-conc-2-NA-wide.csv │ ├── data-conc-2.csv │ ├── data-salary-2.csv │ ├── data-salary-3.csv │ └── data-shopping-3.csv ├── model │ ├── model8-1.stan │ ├── model8-2.stan │ ├── model8-3.stan │ ├── model8-4.stan │ ├── model8-5.stan │ ├── model8-6.stan │ ├── model8-7.stan │ └── model8-8.stan ├── output │ ├── fig8-1-left.png │ ├── fig8-1-left.py.png │ ├── fig8-1-right.png │ ├── fig8-1-right.py.png │ ├── fig8-1.png │ ├── fig8-10-left.png │ ├── fig8-10-left.py.png │ ├── fig8-10-right.png │ ├── fig8-10-right.py.png │ ├── fig8-10.png │ ├── fig8-2.png │ ├── fig8-2.py.png │ ├── fig8-3.png │ ├── fig8-4-left.png │ ├── fig8-4-left.py.png │ ├── fig8-4-right.png │ ├── fig8-4-right.py.png │ ├── fig8-4.png │ ├── fig8-5-left.png │ ├── fig8-5-left.py.png │ ├── fig8-5-right.png │ ├── fig8-5-right.py.png │ ├── fig8-5.png │ ├── fig8-6-left.png │ ├── fig8-6-left.py.png │ ├── fig8-6-right.png │ ├── fig8-6-right.py.png │ ├── fig8-6.png │ ├── fig8-7-left.png │ ├── fig8-7-left.py.png │ ├── fig8-7-right.png │ ├── fig8-7-right.py.png │ ├── fig8-7.png │ ├── fig8-8.png │ ├── fig8-8.py.png │ ├── fig8-9.png │ └── fig8-9.py.png ├── run-model8-1.R ├── run-model8-1.py ├── run-model8-2.R ├── run-model8-2.py ├── run-model8-3.R ├── run-model8-3.py ├── run-model8-4.R ├── run-model8-4.py ├── run-model8-5.R ├── run-model8-5.py ├── run-model8-6.R ├── run-model8-6.py ├── run-model8-7.R ├── run-model8-7.py ├── run-model8-8.R ├── run-model8-8.py ├── sim-model8-3.R └── sim-model8-3.py ├── chap09 ├── fig9-1.R ├── fig9-2.R ├── fig9-3.R ├── input │ ├── data-category.csv │ ├── data-salary-2.csv │ ├── data-tennis-2017.csv │ ├── data-tennis-players-2017.csv │ └── data-tortoise-hare.csv ├── model │ ├── model9-1.stan │ ├── model9-10.stan │ ├── model9-11.stan │ ├── model9-2.stan │ ├── model9-3.stan │ ├── model9-5.stan │ ├── model9-6.stan │ ├── model9-7.stan │ ├── model9-8.stan │ └── model9-9.stan ├── output │ ├── fig9-1.png │ ├── fig9-2-left.png │ ├── fig9-2-right.png │ ├── fig9-2.png │ └── fig9-3.png ├── run-model9-1.R ├── run-model9-1.py ├── run-model9-10.R ├── run-model9-10.py ├── run-model9-11.R ├── run-model9-11.py ├── run-model9-2.R ├── run-model9-2.py ├── run-model9-3.R ├── run-model9-3.py ├── run-model9-5.R ├── run-model9-5.py ├── run-model9-6.R ├── run-model9-6.py ├── run-model9-7.R ├── run-model9-7.py ├── run-model9-8.R ├── run-model9-8.py ├── sim-model9-3.R └── sim-model9-3.py ├── chap10 ├── fig10-2.R ├── fig10-2.py ├── fig10-3.R ├── fig10-3.py ├── fig10-4.R ├── fig10-4.py ├── input │ ├── data-ZIB.csv │ ├── data-coin.csv │ ├── data-mix1.csv │ ├── data-mix2.csv │ └── data-poisson-binomial.csv ├── model │ ├── model10-1.stan │ ├── model10-2.stan │ ├── model10-4.stan │ ├── model10-5.stan │ ├── model10-6.stan │ ├── model10-6b.stan │ └── model10-7.stan ├── output │ ├── fig10-1.png │ ├── fig10-2.png │ ├── fig10-2.py.png │ ├── fig10-3.png │ ├── fig10-3.py.png │ ├── fig10-4.png │ └── fig10-4.py.png ├── run-model10-1.R ├── run-model10-1.py ├── run-model10-2.R ├── run-model10-2.py ├── run-model10-4.R ├── run-model10-4.py ├── run-model10-5.R ├── run-model10-5.py ├── run-model10-6.R ├── run-model10-6.py ├── run-model10-7.R └── run-model10-7.py ├── chap11 ├── column.R ├── column.py ├── exercise │ ├── data-ex3.csv │ ├── data-ex4.csv │ ├── ex2.R │ ├── ex2.py │ ├── ex2.stan │ ├── ex4.R │ ├── ex4.py │ └── ex4.stan ├── fig11-1-right.R ├── fig11-1-right.py ├── fig11-10.R ├── fig11-10.py ├── fig11-11.R ├── fig11-11.py ├── fig11-12.R ├── fig11-12.py ├── fig11-13.R ├── fig11-13.py ├── fig11-14.R ├── fig11-14.py ├── fig11-15.R ├── fig11-15.py ├── fig11-17.R ├── fig11-17.py ├── fig11-18.R ├── fig11-18.py ├── fig11-19.R ├── fig11-20.R ├── fig11-20.py ├── fig11-21.R ├── fig11-21.py ├── fig11-22.R ├── fig11-22.py ├── fig11-23.R ├── fig11-23.py ├── fig11-3.R ├── fig11-3.py ├── fig11-4.R ├── fig11-4.py ├── fig11-5.R ├── fig11-5.py ├── fig11-6.R ├── fig11-6.py ├── fig11-7.R ├── fig11-7.py ├── fig11-8.R ├── fig11-8.py ├── fig11-9.R ├── fig11-9.py ├── input │ ├── data-eg1.csv │ ├── data-eg2.csv │ ├── data-eg3-players.csv │ ├── data-eg3.csv │ ├── data-eg4.csv │ ├── data-pulse.csv │ ├── data-season.csv │ ├── data-switch.csv │ └── data-weight.csv ├── model │ ├── model11-10.stan │ ├── model11-11.stan │ ├── model11-12.stan │ ├── model11-12b.stan │ ├── model11-13-wo-AR.stan │ ├── model11-13.stan │ ├── model11-2.stan │ ├── model11-2b.stan │ ├── model11-3.stan │ ├── model11-4.stan │ ├── model11-5.stan │ ├── model11-5b.stan │ ├── model11-6.stan │ ├── model11-7.stan │ ├── model11-8.stan │ └── model11-9.stan ├── output │ ├── fig-table1-ar-ACF.png │ ├── fig-table1-ar.png │ ├── fig-table1-noise-ACF.png │ ├── fig-table1-noise.png │ ├── fig-table1-pulse-ACF.png │ ├── fig-table1-pulse.png │ ├── fig-table1-reg-ACF.png │ ├── fig-table1-reg.png │ ├── fig-table1-season-ACF.png │ ├── fig-table1-season.png │ ├── fig-table1-switch-ACF.png │ ├── fig-table1-switch.png │ ├── fig-table1-trend-ACF.png │ ├── fig-table1-trend.png │ ├── fig11-1-left.png │ ├── fig11-1-middle.png │ ├── fig11-1-right.png │ ├── fig11-1-right.py.png │ ├── fig11-1.png │ ├── fig11-10.png │ ├── fig11-10.py.png │ ├── fig11-11-left.png │ ├── fig11-11-left.py.png │ ├── fig11-11-right.png │ ├── fig11-11-right.py.png │ ├── fig11-11.png │ ├── fig11-12.png │ ├── fig11-12.py.png │ ├── fig11-13-left.png │ ├── fig11-13-left.py.png │ ├── fig11-13-right.png │ ├── fig11-13-right.py.png │ ├── fig11-13.png │ ├── fig11-14.png │ ├── fig11-14.py.png │ ├── fig11-15.png │ ├── fig11-15.py.png │ ├── fig11-16.png │ ├── fig11-17-left.png │ ├── fig11-17-left.py.png │ ├── fig11-17-right.png │ ├── fig11-17-right.py.png │ ├── fig11-17.png │ ├── fig11-18.png │ ├── fig11-18.py.png │ ├── fig11-19.png │ ├── fig11-2.png │ ├── fig11-20-left.png │ ├── fig11-20-left.py.png │ ├── fig11-20-right.png │ ├── fig11-20-right.py.png │ ├── fig11-20.png │ ├── fig11-21.png │ ├── fig11-21.py.png │ ├── fig11-22-left.png │ ├── fig11-22-left.py.png │ ├── fig11-22-right.png │ ├── fig11-22-right.py.png │ ├── fig11-22.png │ ├── fig11-23-left.png │ ├── fig11-23-left.py.png │ ├── fig11-23-right.png │ ├── fig11-23-right.py.png │ ├── fig11-23.png │ ├── fig11-3.png │ ├── fig11-3.py.png │ ├── fig11-4-left.png │ ├── fig11-4-left.py.png │ ├── fig11-4-right.png │ ├── fig11-4-right.py.png │ ├── fig11-4.png │ ├── fig11-5-left.png │ ├── fig11-5-left.py.png │ ├── fig11-5-right.png │ ├── fig11-5-right.py.png │ ├── fig11-5.png │ ├── fig11-6.png │ ├── fig11-6.py.png │ ├── fig11-7-left.png │ ├── fig11-7-left.py.png │ ├── fig11-7-right.png │ ├── fig11-7-right.py.png │ ├── fig11-7.png │ ├── fig11-8.png │ ├── fig11-8.py.png │ ├── fig11-9-left.png │ ├── fig11-9-left.py.png │ ├── fig11-9-right.png │ ├── fig11-9-right.py.png │ └── fig11-9.png ├── run-model11-10.R ├── run-model11-10.py ├── run-model11-11.R ├── run-model11-11.py ├── run-model11-12.R ├── run-model11-12.py ├── run-model11-13-wo-AR.R ├── run-model11-13-wo-AR.py ├── run-model11-13.R ├── run-model11-13.py ├── run-model11-2.R ├── run-model11-2.py ├── run-model11-3.R ├── run-model11-3.py ├── run-model11-4.R ├── run-model11-4.py ├── run-model11-5.R ├── run-model11-5.py ├── run-model11-6.R ├── run-model11-6.py ├── run-model11-7.R ├── run-model11-7.py ├── run-model11-8.R ├── run-model11-8.py ├── run-model11-9.R └── run-model11-9.py ├── chap12 ├── exercise │ ├── ex2.R │ ├── ex2.py │ ├── ex2.stan │ ├── ex3.R │ ├── ex3.py │ ├── ex3.stan │ ├── ex4.R │ ├── ex4.py │ └── ex4.stan ├── fig12-10.R ├── fig12-10.py ├── fig12-11.R ├── fig12-11.py ├── fig12-12.R ├── fig12-12.py ├── fig12-14.R ├── fig12-14.py ├── fig12-15.R ├── fig12-15.py ├── fig12-16.R ├── fig12-16.py ├── fig12-18.R ├── fig12-18.py ├── fig12-2-left.R ├── fig12-2-left.py ├── fig12-2-right.R ├── fig12-2-right.py ├── fig12-3.R ├── fig12-3.py ├── fig12-5.R ├── fig12-5.py ├── fig12-7-left.R ├── fig12-7-left.py ├── fig12-7-right.R ├── fig12-7-right.py ├── fig12-8.R ├── fig12-8.py ├── fig12-9.R ├── fig12-9.py ├── input │ ├── data-1D.csv │ ├── data-2Dmesh-design.csv │ ├── data-2Dmesh.csv │ ├── data-ageheap.csv │ ├── data-gp-sparse.csv │ ├── data-gp.csv │ ├── data-map-JIS.csv │ ├── data-map-neighbor.csv │ └── data-map-temperature.csv ├── model │ ├── model12-10.stan │ ├── model12-2.stan │ ├── model12-3.stan │ ├── model12-4.stan │ ├── model12-5.stan │ ├── model12-6.stan │ ├── model12-7a.stan │ ├── model12-7b.stan │ ├── model12-7c.stan │ ├── model12-7d.stan │ ├── model12-8.stan │ └── model12-9.stan ├── output │ ├── fig12-1.png │ ├── fig12-10-left.png │ ├── fig12-10-left.py.png │ ├── fig12-10-right.png │ ├── fig12-10-right.py.png │ ├── fig12-10.png │ ├── fig12-11.png │ ├── fig12-11.py.png │ ├── fig12-12.png │ ├── fig12-12.py.png │ ├── fig12-13.png │ ├── fig12-14.png │ ├── fig12-14.py.png │ ├── fig12-15.png │ ├── fig12-15.py.png │ ├── fig12-16.png │ ├── fig12-16.py.png │ ├── fig12-17.png │ ├── fig12-18.png │ ├── fig12-18.py.png │ ├── fig12-2-left.png │ ├── fig12-2-left.py.png │ ├── fig12-2-right.png │ ├── fig12-2-right.py.png │ ├── fig12-2.png │ ├── fig12-3.png │ ├── fig12-3.py.png │ ├── fig12-4.png │ ├── fig12-5-left.png │ ├── fig12-5-left.py.png │ ├── fig12-5-right.png │ ├── fig12-5-right.py.png │ ├── fig12-5.png │ ├── fig12-6.png │ ├── fig12-7-left.png │ ├── fig12-7-left.py.png │ ├── fig12-7-right.png │ ├── fig12-7-right.py.png │ ├── fig12-7.png │ ├── fig12-8-left.png │ ├── fig12-8-left.py.png │ ├── fig12-8-right.png │ ├── fig12-8-right.py.png │ ├── fig12-8.png │ ├── fig12-9.png │ └── fig12-9.py.png ├── run-model12-10.R ├── run-model12-10.py ├── run-model12-2.R ├── run-model12-2.py ├── run-model12-3.R ├── run-model12-3.py ├── run-model12-4.R ├── run-model12-4.py ├── run-model12-5.R ├── run-model12-5.py ├── run-model12-6.R ├── run-model12-6.py ├── run-model12-7a.R ├── run-model12-7a.py ├── run-model12-7b.R ├── run-model12-7b.py ├── run-model12-7c.R ├── run-model12-7c.py ├── run-model12-7d.R ├── run-model12-7d.py ├── run-model12-8.R ├── run-model12-8.py ├── run-model12-9.R ├── run-model12-9.py ├── simGP.R └── simGP.py ├── chap13 ├── fig13-1.R ├── fig13-1.py ├── fig13-2.R ├── fig13-2.py ├── fig13-3.R ├── fig13-3.py ├── input │ └── data.csv ├── minimize-expected-loss.R ├── minimize-expected-loss.py ├── model │ ├── model13-1.stan │ └── model13-2.stan ├── output │ ├── fig13-1.png │ ├── fig13-1.py.png │ ├── fig13-2.png │ ├── fig13-2.py.png │ ├── fig13-3.png │ └── fig13-3.py.png ├── run-model13-1.R ├── run-model13-1.py ├── run-model13-2.R ├── run-model13-2.py ├── run-model13-3.R ├── run-model13-3.py ├── run-model13-3_for-figure.R └── run-model13-3_for-figure.py ├── chap14 ├── exercise │ ├── ex1.R │ └── ex1.py ├── fig14-1.R ├── fig14-1.py ├── fig14-2.R ├── fig14-2.py ├── fig14-3.R ├── fig14-3.py ├── fig14-4.R ├── fig14-4.py ├── fig14-5-left.R ├── fig14-5-left.py ├── fig14-5-right.R ├── fig14-5-right.py ├── fig14-6.R ├── fig14-6.py ├── fig14-7-left.R ├── fig14-7-left.py ├── fig14-7-right.R ├── fig14-7-right.py ├── fig14-8.R ├── fig14-9_and_fig14-10.R ├── gsl_cquad.cpp ├── input │ ├── data-matrix-decomp.csv │ ├── data-oil.csv │ └── data-surv.csv ├── model │ ├── model14-1.stan │ ├── model14-2.stan │ ├── model14-3.stan │ ├── model14-4.stan │ ├── model14-5.stan │ ├── model14-6.stan │ ├── model14-7.stan │ ├── model14-8.stan │ ├── model14-a-logistic.stan │ ├── model14-b-emax.stan │ └── model14-b-linear.stan ├── output │ ├── fig14-1-left.png │ ├── fig14-1-left.py.png │ ├── fig14-1-middle.png │ ├── fig14-1-middle.py.png │ ├── fig14-1-right.png │ ├── fig14-1-right.py.png │ ├── fig14-1.png │ ├── fig14-10.png │ ├── fig14-2-left.png │ ├── fig14-2-left.py.png │ ├── fig14-2-right.png │ ├── fig14-2-right.py.png │ ├── fig14-2.png │ ├── fig14-3-left.png │ ├── fig14-3-left.py.png │ ├── fig14-3-right.png │ ├── fig14-3-right.py.png │ ├── fig14-3.png │ ├── fig14-4.png │ ├── fig14-4.py.png │ ├── fig14-5-left.png │ ├── fig14-5-left.py.png │ ├── fig14-5-right.png │ ├── fig14-5-right.py.png │ ├── fig14-5.png │ ├── fig14-6.png │ ├── fig14-6.py.png │ ├── fig14-7-left.png │ ├── fig14-7-left.py.png │ ├── fig14-7-right.png │ ├── fig14-7-right.py.png │ ├── fig14-7.png │ ├── fig14-8.png │ └── fig14-9.png ├── run-model14-1.R ├── run-model14-1.py ├── run-model14-2.R ├── run-model14-2.py ├── run-model14-3.R ├── run-model14-3.py ├── 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