├── .Rbuildignore ├── .gitattributes ├── .github ├── .gitignore ├── CONTRIBUTING.md └── workflows │ ├── R-CMD-check.yaml │ ├── pkgdown.yaml │ └── test-coverage.yaml ├── .gitignore ├── .lintr ├── DESCRIPTION ├── LICENSE ├── LICENSES_THIRD_PARTY ├── NAMESPACE ├── NEWS.md ├── R ├── RcppExports.R ├── ahr.R ├── ahr_blinded.R ├── as_gt.R ├── as_rtf.R ├── check_arg.R ├── define.R ├── expected_accural.R ├── expected_event.R ├── expected_time.R ├── fixed_design_ahr.R ├── fixed_design_fh.R ├── fixed_design_lf.R ├── fixed_design_maxcombo.R ├── fixed_design_mb.R ├── fixed_design_milestone.R ├── fixed_design_rd.R ├── fixed_design_rmst.R ├── globals.R ├── gridpts_h1_hupdate.R ├── gsDesign2-package.R ├── gs_b.R ├── gs_bound_summary.R ├── gs_cp_npe.R ├── gs_design_ahr.R ├── gs_design_combo.R ├── gs_design_npe.R ├── gs_design_rd.R ├── gs_design_wlr.R ├── gs_info_ahr.R ├── gs_info_combo.R ├── gs_info_rd.R ├── gs_info_wlr.R ├── gs_power_ahr.R ├── gs_power_combo.R ├── gs_power_npe.R ├── gs_power_rd.R ├── gs_power_wlr.R ├── gs_spending_bound.R ├── gs_spending_combo.R ├── gs_update_ahr.R ├── print.R ├── pw_info.R ├── pwe.R ├── rmst.R ├── summary.R ├── text_summary.R ├── to_integer.R ├── utility_combo.R ├── utility_tidy_tbl.R ├── utility_wlr.R ├── utils.R └── wlr_weight.R ├── README.Rmd ├── README.md ├── _pkgdown.yml ├── codecov.yml ├── cran-comments.md ├── data-raw └── simu_test_gs_design_combo.R ├── gsDesign2.Rproj ├── inst ├── WORDLIST ├── achieved_vignettes │ └── style.Rmd └── example_run_time │ └── timer.Rmd ├── man ├── ahr.Rd ├── ahr_blinded.Rd ├── as_gt.Rd ├── as_rtf.Rd ├── define_enroll_rate.Rd ├── define_fail_rate.Rd ├── expected_accrual.Rd ├── expected_event.Rd ├── expected_time.Rd ├── figures │ ├── logo.png │ └── logo.xcf ├── fixed_design.Rd ├── gsDesign2-package.Rd ├── gs_b.Rd ├── gs_bound_summary.Rd ├── gs_cp_npe.Rd ├── gs_create_arm.Rd ├── gs_design_ahr.Rd ├── gs_design_combo.Rd ├── gs_design_rd.Rd ├── gs_design_wlr.Rd ├── gs_info_ahr.Rd ├── gs_info_combo.Rd ├── gs_info_rd.Rd ├── gs_info_wlr.Rd ├── gs_power_ahr.Rd ├── gs_power_combo.Rd ├── gs_power_design_npe.Rd ├── gs_power_rd.Rd ├── gs_power_wlr.Rd ├── gs_spending_bound.Rd ├── gs_spending_combo.Rd ├── gs_update_ahr.Rd ├── ppwe.Rd ├── pw_info.Rd ├── s2pwe.Rd ├── summary.Rd ├── text_summary.Rd ├── to_integer.Rd └── wlr_weight.Rd ├── pkgdown ├── extra.css └── favicon │ ├── apple-touch-icon-120x120.png │ ├── apple-touch-icon-152x152.png │ ├── apple-touch-icon-180x180.png │ ├── apple-touch-icon-60x60.png │ ├── apple-touch-icon-76x76.png │ ├── apple-touch-icon.png │ ├── favicon-16x16.png │ ├── favicon-32x32.png │ └── favicon.ico ├── src ├── .gitignore ├── RcppExports.cpp ├── gridpts.cpp ├── gridpts.h ├── h1.cpp ├── h1.h ├── hupdate.cpp └── hupdate.h ├── tests ├── testthat.R └── testthat │ ├── _snaps │ ├── independent_as_gt.md │ └── independent_as_rtf │ │ ├── fixed_design_ahr.rtf │ │ ├── fixed_design_ahr_footnote.rtf │ │ ├── fixed_design_ahr_title.rtf │ │ ├── gs_design_ahr.rtf │ │ ├── gs_design_rd.rtf │ │ ├── gs_design_wlr.rtf │ │ ├── gs_power_wlr.rtf │ │ ├── gs_power_wlr_cols_display.rtf │ │ ├── gs_power_wlr_efficacy_bound.rtf │ │ ├── gs_power_wlr_footnote.rtf │ │ ├── gs_power_wlr_futility_bound.rtf │ │ ├── gs_power_wlr_spanner.rtf │ │ └── gs_power_wlr_title.rtf │ ├── fixtures │ ├── sim_gsd_pMaxCombo_exp1_H0_test.Rdata │ ├── sim_gsd_pMaxCombo_exp1_H1_test.Rdata │ └── simulation_test_data.Rdata │ ├── helper-developer-summary.R │ ├── helper-double-programming-expected_accrual.R │ ├── helper-double-programming-expected_event.R │ ├── helper-double-programming-expected_time.R │ ├── helper-double-programming-gs_design_combo.R │ ├── helper-double-programming-gs_info_ahr.R │ ├── helper-double-programming-ppwe.R │ ├── helper-old-version-AHR_.R │ ├── helper-old-version-eAccrual_.R │ ├── helper-old-version-eEvents_.R │ ├── helper-old-version-gridpts_h1_hupdate.R │ ├── helper-old-version-gs_design_ahr_.R │ ├── helper-old-version-gs_design_npe_.R │ ├── helper-old-version-gs_info_ahr_.R │ ├── helper-old-version-gs_power_ahr_.R │ ├── helper-old-version-gs_power_npe_.R │ ├── helper-old-version-tEvents_.R │ ├── helper-old_version-eEvents_df_.R │ ├── helper-support-as_rtf.R │ ├── helper.R │ ├── test-developer-ahr.R │ ├── test-developer-as_gt.R │ ├── test-developer-expected_event.R │ ├── test-developer-expected_time.R │ ├── test-developer-fastlag.R │ ├── test-developer-gridpts.R │ ├── test-developer-gs_b.R │ ├── test-developer-gs_bound_summary.R │ ├── test-developer-gs_cp_npe.R │ ├── test-developer-gs_design_ahr.R │ ├── test-developer-gs_design_npe.R │ ├── test-developer-gs_design_rd.R │ ├── test-developer-gs_design_wlr.R │ ├── test-developer-gs_info_wlr.R │ ├── test-developer-gs_power_ahr.R │ ├── test-developer-gs_power_npe.R │ ├── test-developer-gs_power_rd.R │ ├── test-developer-gs_power_wlr.R │ ├── test-developer-gs_spending_bound.R │ ├── test-developer-pw_info.R │ ├── test-developer-summary.R │ ├── test-developer-to_integer.R │ ├── test-independent-ahr.R │ ├── test-independent-ahr_blinded.R │ ├── test-independent-check_arg.R │ ├── test-independent-expected_accrual.R │ ├── test-independent-expected_event.R │ ├── test-independent-expected_time.R │ ├── test-independent-fixed_design.R │ ├── test-independent-gridpts.R │ ├── test-independent-gs_b.R │ ├── test-independent-gs_bound.R │ ├── test-independent-gs_design_ahr.R │ ├── test-independent-gs_design_combo.R │ ├── test-independent-gs_design_npe.R │ ├── test-independent-gs_info_ahr.R │ ├── test-independent-gs_info_combo.R │ ├── test-independent-gs_power_ahr.R │ ├── test-independent-gs_power_combo.R │ ├── test-independent-gs_power_npe.R │ ├── test-independent-gs_spending_bound.R │ ├── test-independent-gs_spending_combo.R │ ├── test-independent-gs_update_ahr.R │ ├── test-independent-h1.R │ ├── test-independent-hupdate.R │ ├── test-independent-rmst.R │ ├── test-independent-to_integer.R │ ├── test-independent-utility_combo.R │ ├── test-independent-utility_tbl.R │ ├── test-independent-wlr_weight.R │ ├── test-independent_as_gt.R │ ├── test-independent_as_rtf.R │ ├── test-independent_gs_design_wlr.R │ ├── test-independent_gs_info_wlr.R │ ├── test-independent_gs_power_wlr.R │ ├── test-independent_ppwe.R │ ├── test-independent_s2pwe.R │ └── test-independent_wlr_weight.R └── vignettes ├── .gitignore ├── articles ├── custom.css ├── figures │ ├── east-n-fix.png │ ├── east-n-gs-pool.png │ ├── east-n-gs-unpool.png │ └── east-n-gs.png ├── fixtures │ ├── compute_expected_events.rds │ └── rd_simu_power_gspowernpe_2_weight.rds ├── gsDesign2.bib ├── story-ahr-under-nph.Rmd ├── story-arbitrary-distribution.Rmd ├── story-canonical-h0-h1.Rmd ├── story-compare-power-delay-effect.Rmd ├── story-compute-expected-events.Rmd ├── story-compute-npe-bound.Rmd ├── story-cp.Rmd ├── story-design-with-ahr.Rmd ├── story-design-with-spending.Rmd ├── story-info-formula.Rmd ├── story-integer-design.Rmd ├── story-npe-background.Rmd ├── story-npe-integration.Rmd ├── 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