├── Algorithms-in-Bioinformatics.md ├── Analysis-Strategies-for-Shotgun-Metagenome.md ├── Analysis-of-16S-metagenome.md ├── Analysis-of-Metagenome.md ├── Begining-Pangenome.md ├── Beginning-Single-Molecule-Sequencing.md ├── DESeq2使用指南.md ├── DiveInto_variantCalling.md ├── Genotype-Imputation.md ├── MeDIP-seq.md ├── MeRIP-seq.md ├── Note-DragonStar-Lecture-19.md ├── Population-Genetics.md ├── README.md ├── RNA-editing分析实战.md ├── RNA-seq.md ├── RNA-seq分析番外篇.md ├── Ref-based-genomeAssem-annotation-transfer.md ├── RepSeq.md ├── Shotgun-Meta.md ├── Stat-on-RNAseq.md ├── Structural-Variation.md ├── Try-CallSnp-using-GATK4.md ├── Understand-MetaBin-by-CONCOCT.md ├── WXS_doc_pic ├── Algorithms-Bioinf-variants-calling-algorithmn-GATK-1.png ├── Algorithms-Bioinf-variants-calling-algorithmn-GATK-2.png ├── Algorithms-Bioinf-variants-calling-algorithmn-GATK-3.png ├── Algorithms-Bioinf-variants-calling-algorithmn-GATK-4.png ├── Algorithms-Bioinf-variants-calling-algorithmn-GATK-5.png ├── Alignment-algorithmn-1.png ├── Alignment-algorithmn-10.png ├── Alignment-algorithmn-11.png ├── Alignment-algorithmn-12.png ├── Alignment-algorithmn-13.png ├── Alignment-algorithmn-14.png ├── Alignment-algorithmn-15.png ├── Alignment-algorithmn-16.png ├── Alignment-algorithmn-2.png ├── Alignment-algorithmn-3.png ├── Alignment-algorithmn-4.png ├── Alignment-algorithmn-5.png ├── Alignment-algorithmn-6.png ├── Alignment-algorithmn-7.png ├── Alignment-algorithmn-8.png ├── Alignment-algorithmn-9.png ├── BQSR_quality_estimation_error-1.png ├── BQSR_quality_estimation_error-2.png ├── BWT-exactMatch.png ├── BWT-inexactMatch.png ├── BioLeetCode_how2deal_Hard_2-2-1.png ├── BioLeetCode_how2deal_Hard_2-2-2.png ├── BioLeetCode_how2deal_Hard_2-2-3.png ├── BioLeetCode_issue_Hard_2-2-1.png ├── BioLeetCode_issue_Hard_2-2-2.png ├── BioLeetCode_issue_Hard_2.png ├── Experiment-instrution-1.png ├── Experiment-instrution-2.png ├── GATK4-pipeline-remove-duplicates-1.png ├── GATK4-pipeline-remove-duplicates-2.png ├── GATK4-pipeline-remove-duplicates-3.png ├── GATK4-pipeline-remove-duplicates-reason-of-duplicates.jpg ├── Gaussian-distribution-1.png ├── Gaussian-distribution-2.png ├── Hard-filter-01.png ├── Hard-filter-02.png ├── Hard-filter-03.png ├── Hard-filter-1.png ├── Hard-filter-2.png ├── Hard-filter-3.png ├── Hard-filter-4.png ├── Hard-filter-5.png ├── Hard-filter-6.png ├── VCF-format-1.png ├── VQSR-1.png ├── VQSR-2.jpg ├── VQSR-3.png ├── VQSR-4.jpg ├── VQSR-5.jpg ├── VQSR-6.png ├── VQSR-7.png ├── VQSR-8.png ├── VQSR-9.png ├── realign-after.png ├── realign-before.png ├── realign-misalign-example.png ├── realign-necessary-1.png ├── realign-necessary-2.png ├── snp-calling-GCbias.png ├── snp-calling-estimate-depth-distribution.png ├── snp-calling-mathmatical-theory-individual-site-1.png ├── snp-calling-mathmatical-theory-individual-site-2.png ├── snp-calling-mathmatical-theory-individual-site-3.png ├── snp-calling-mathmatical-theory.png └── snp-calling-possion-overdispersion.png ├── call-snp.md ├── picture ├── 16S-metagenome-Google-Scholar-stat.png ├── 16S-metagenome-OUT-cluster-1.png ├── 16S-metagenome-OUT-cluster-2.jpg ├── 16S-metagenome-OUT-cluster-3.png ├── 16S-metagenome-RDP.png ├── 16S-metagenome-data-preprocess-1.png ├── 16S-metagenome-data-preprocess-2.png ├── 16S-metagenome-mothur.png ├── 16S-metagenome-workflow-outline.png ├── 3GS-Nanopore-base-calling.png ├── 3GS-Nanopore-data-formate-handling-tools.jpg ├── 3GS-Nanopore-data-formate-handling.png ├── 3GS-PacBio-QC-library-sequence.png ├── 3GS-PacBio-QC-quality-length.png ├── 3GS-PacBio-QC-quality-zmw-loading.png ├── 3GS-PacBio-QC-rawdata.png ├── 3GS-PacBio-QC-subreads.png ├── 3GS-PacBio-assembly-approaches.png ├── 3GS-PacBio-assembly-compare-2-algorithms.png ├── 3GS-analysis-error-correction-LoRDEC-1.png ├── 3GS-analysis-error-correction-LoRDEC-2.png ├── 3GS-analysis-error-correction-LoRDEC-3.png ├── 3GS-analysis-error-correction-LoRDEC-4.png ├── 3GS-analysis-error-correction-LoRDEC-5.png ├── 3GS-assembly-algorithms.png ├── 3GS-assembly-approachs-1.png ├── 3GS-assembly-approachs-2.png ├── 3GS-assembly-approachs-3.png ├── 3GS-assembly-approachs-4.png ├── 3GS-assembly-approachs-5.png ├── 3GS-assembly-error-correction-position-coverage-1.png ├── 3GS-assembly-error-correction-position-coverage-2.png ├── 3GS-assembly-error-correction-position-coverage-3.png ├── 3GS-assembly-error-correction-position-coverage-4.png ├── 3GS-assembly-error-correction.jpg ├── 3GS-principle-10Xgenome-GCbias.png ├── 3GS-principle-10xgenome.png ├── 3GS-principle-Nanopore-MinION-feature-1.png ├── 3GS-principle-Nanopore-MinION-feature-2.png ├── 3GS-principle-Nanopore-MinION-feature-3.png ├── 3GS-principle-Nanopore-device-GridION.jpeg ├── 3GS-principle-Nanopore-device-MinION.jpeg ├── 3GS-principle-Nanopore-device-PromethION.jpeg ├── 3GS-principle-Nanopore-feature-correaction-rate-1.png ├── 3GS-principle-Nanopore-feature-correaction-rate-2.png ├── 3GS-principle-Nanopore.png ├── 3GS-principle-SMRT-detect-modification.png ├── 3GS-principle-SMRT-features.png ├── 3GS-principle-SMRT-reads-error.png ├── 3GS-principle-SMRT.png ├── 3GS-principle-tSMS.png ├── Algorithms-Bioinf-alignment-BLASR-1.png ├── Algorithms-Bioinf-alignment-BLASR-2.png ├── Algorithms-Bioinf-alignment-BLAST-TCR-1.png ├── Algorithms-Bioinf-alignment-BLAST-TCR-2.png ├── Algorithms-Bioinf-alignment-BLAT.png ├── Algorithms-Bioinf-alignment-suffix-tree-1.png ├── Algorithms-Bioinf-alignment-suffix-tree-2.png ├── Algorithms-Bioinf-alignment-suffix-tree-trie-tree-1.jpg ├── Algorithms-Bioinf-alignment-suffix-tree-trie-tree-2.gif ├── Algorithms-Bioinf-alignment-suffix-tree-trie-tree-3.gif ├── Algorithms-Bioinf-alignment-suffix-tree-trie-tree-4.jpg ├── Algorithms-Bioinf-alignment-suffix-tree-trie-tree-5.jpg ├── Algorithms-Bioinf-alignment-suffix-tree-trie-tree-6.gif ├── Algorithms-Bioinf-alignment-suffix-tree-trie-tree-7.gif ├── Algorithms-Bioinf-alignment-suffix-tree-trie-tree-8.gif ├── Algorithms-Bioinf-alignment-suffix-tree-trie-tree-9.jpg ├── Algorithms-Bioinf-assembly-simplify-graph-1.png ├── Algorithms-Bioinf-assembly-simplify-graph-2.png ├── Algorithms-Bioinf-bining-composition-formula.png ├── Algorithms-Bioinf-bining-coverage-formula-1.png ├── Algorithms-Bioinf-bining-coverage-formula-2.png ├── Algorithms-Bioinf-k-mer-SEEKR-1.png ├── Algorithms-Bioinf-k-mer-SEEKR-2.png ├── Algorithms-Bioinf-k-mer-SEEKR-3.png ├── Algorithms-Bioinf-variants-calling-1.png ├── Algorithms-Bioinf-variants-calling-2.png ├── Algorithms-Bioinf-variants-calling-3.png ├── Algorithms-Bioinf-variants-calling-algorithmn-GATK-1.png ├── Beginning-SMS-principle-SMRT-detect-modification.png ├── Beginning-SMS-principle-SMRT.png ├── Beginning-SMS-principle-tSMS.png ├── BioStat-introduction-common-distributions-poisson-distribution-curve.png ├── DiffExpAna-filtData.png ├── DiffExpAna-normalization-CPM.png ├── DiffExpAna-normalization-DESeq2.png ├── DiffExpAna-normalization-House-keeping-genes.jpg ├── DiffExpAna-normalization-TCS-1.png ├── DiffExpAna-normalization-TCS-2.png ├── DiffExpAna-normalization-TMM-1.jpg ├── DiffExpAna-normalization-TMM-2.png ├── DiffExpAna-normalization-TMM-3.jpg ├── DiffExpAna-normalization-TMM-4.png ├── DiffExpAna-normalization-analysis-FPKM-RPKM-1.png ├── DiffExpAna-normalization-analysis-FPKM-RPKM-10.png ├── DiffExpAna-normalization-analysis-FPKM-RPKM-11.png ├── DiffExpAna-normalization-analysis-FPKM-RPKM-12.png ├── DiffExpAna-normalization-analysis-FPKM-RPKM-13.png ├── DiffExpAna-normalization-analysis-FPKM-RPKM-2.png ├── DiffExpAna-normalization-analysis-FPKM-RPKM-3.png ├── DiffExpAna-normalization-analysis-FPKM-RPKM-4.png ├── DiffExpAna-normalization-analysis-FPKM-RPKM-5.png ├── DiffExpAna-normalization-analysis-FPKM-RPKM-6.png ├── DiffExpAna-normalization-analysis-FPKM-RPKM-7.png ├── DiffExpAna-normalization-analysis-FPKM-RPKM-8.png ├── DiffExpAna-normalization-analysis-FPKM-RPKM-9.jpg ├── DiffExpAna-normalization-quantile.png ├── DiffExpAna-normalization-spike-in.jpg ├── DiffExpAna-normalization.png ├── DiffExpAna-statistic-principle-1.png ├── DiffExpAna-statistic-principle-2.png ├── DiffExpAna-statistic-principle-3.png ├── DiffExpAna-statistic-principle-4.jpg ├── DiffExpAna-statistic-principle-binomial-distribution-curve.jpg ├── DiffExpAna-statistic-principle-binomial-distribution.png ├── DiffExpAna-statistic-principle-negative-binomial-distribution-1.png ├── DiffExpAna-statistic-principle-negative-binomial-distribution-2.png ├── DiffExpAna-statistic-principle-negative-binomial-distribution-3.png ├── DiffExpAna-statistic-principle-negative-binomial-distribution-4.png ├── DiffExpAna-statistic-principle-negative-binomial-distribution-5.png ├── DiffExpAna-statistic-principle-negative-binomial-distribution-diff.png ├── DiffExpAna-statistic-principle-negative-binomial-distribution-expectation.png ├── GATK4-logo.png ├── GATK4-pipeline-Germline-SNPs-Indels.png ├── GATK4-pipeline-hard-filter-FS.png ├── GATK4-pipeline-hard-filter-MQ-1.png ├── GATK4-pipeline-hard-filter-MQ-2.png ├── GATK4-pipeline-hard-filter-MQRankSum.png ├── GATK4-pipeline-hard-filter-QD.png ├── GATK4-pipeline-hard-filter-SOR.png ├── GATK4-pipeline-remove-duplicates-1.png ├── GATK4-pipeline-remove-duplicates-2.png ├── GATK4-pipeline-remove-duplicates-3.png ├── GATK4-pipeline-remove-duplicates-4.png ├── GATK4-pipeline-remove-duplicates-5.png ├── GATK4-pipeline-remove-duplicates-poisson-1.png ├── GATK4-pipeline-remove-duplicates-poisson-2.png ├── GATK4-pipeline-remove-duplicates-poisson-3.png ├── GATK4-pipeline-remove-duplicates-reason-of-duplicates.jpg ├── GATK4-pipeline-remove-duplicates-samtools-principle-1.png ├── GATK4-pipeline-remove-duplicates-samtools-principle-2.png ├── GATK4-pipeline-snp-calling-strategies.jpg ├── GATK4-pipeline.png ├── Genotype-Imputation-description.png ├── Genotype-Imputation-example.jpg ├── Genotype-Imputation-merging-reference-panels.png ├── Genotype-Imputation-missing-effect.jpg ├── Genotype-Imputation-missing-rate.png ├── Genotype-Imputation-missing-resource-snpArray.jpg ├── Genotype-Imputation-tools-IMPUTE2-1.jpg ├── Genotype-Imputation-tools-IMPUTE2-2.jpg ├── Genotype-Imputation-tools-IMPUTE2-3.jpg ├── Immunology-knownledge-B-cell-2.png ├── Immunology-knownledge-antibody-1.png ├── InAction-RNA-editing-analysis-acquire-datasets-ENCODE-matched-list.png ├── LD-Dmax.png ├── LD-LD-Decay-distance.jpg ├── LD-haplotype-block-1.jpg ├── LD-haplotype-block-2.jpg ├── LD-r-formula.png ├── LD-relation-Dplus-r2.jpg ├── LD-visulize-LD-curve.jpg ├── LD-visulize-LD-heatmap.jpg ├── MeDIP-seq-principle-1.png ├── MeDIP-seq-principle-2.png ├── MeDIP-seq-principle-3.png ├── MeRIP-seq-GOenrich-dotplot.png ├── MeRIP-seq-GOtop-graph.png ├── MeRIP-seq-inAction-homer-motif.png ├── MeRIP-seq-inAction-miCLIP.jpg ├── MeRIP-seq-meme-principle-1.png ├── MeRIP-seq-meme-principle-2.png ├── MeRIP-seq-meme-principle-3.png ├── MeRIP-seq-workflow.jpg ├── MeRIP-seq.jpg ├── Metagenome-Best-Practice-experiment-design-1.png ├── Metagenome-Best-Practice-experiment-design-2.png ├── Metagenome-Best-Practice-supplimentary-sample-duplication-1.png ├── Metagenome-Best-Practice-supplimentary-storage-1.png ├── Metagenome-Best-Practice-supplimentary-storage-2.png ├── Metagenome-Best-Practice-supplimentary-storage-3.png ├── Metagenome-Best-Practice-supplimentary-storage-4.png ├── Metagenome-Best-Practice-supplimentary-storage-5.png ├── Metagenome-Best-Practice-supplimentary-storage-6.png ├── Metagenome-Tools-CONCOCT-genomecov-1.png ├── Metagenome-Tools-CONCOCT-genomecov-2.png ├── Metagenome-Tools-CONCOCT-genomecov-3.png ├── Metagenome-Tools-CONCOCT-genomecov-4.png ├── Metagenome-flowchart-1.jpg ├── Metagenome-flowchart-2.png ├── Metagenome-flowchart-compare-2-strategies-of-sequence-analysis.png ├── Metagenome-gene-and-pathway-HUMAnN-flowchart.jpg ├── Metagenome-gene-and-pathway-HUMAnN-pathway-assignment.png ├── Metagenome-gene-and-pathway-HUMAnN-weighted-sums-formula.jpg ├── Metagenome-gene-binning-1.gif ├── Metagenome-gene-binning-2.png ├── Metagenome-gene-binning-methods-and-softwares-1.png ├── Metagenome-gene-binning-methods-and-softwares-2.png ├── Metagenome-introduction-3-issues.jpg ├── Metagenome-logo.jpg ├── Metagenome-study-design-guide-enrich-cell-and-DNA.jpg ├── Metagenome-study-design.png ├── Metagenome-taxonomic-profiling-assembly-based.jpg ├── Metagenome-taxonomic-profiling-reads-based.jpg ├── NGS-course-2-type-coverage.png ├── NGS-course-calculate-intertsize.png ├── NGS-course-depth-coverage.png ├── NGS-course-detect-indel.png ├── NGS-course-different-expression-analysis-calculate-pvalue.png ├── NGS-course-distribution-of-insertsize.png ├── NGS-course-note-1.jpg ├── NGS-course-note-10-1.jpg ├── NGS-course-note-10-2.jpg ├── NGS-course-note-11-1.jpg ├── NGS-course-note-11-2.jpg ├── NGS-course-note-2.jpg ├── NGS-course-note-3.jpg ├── NGS-course-note-4-1.jpg ├── NGS-course-note-4-2.jpg ├── NGS-course-note-5-1.jpg ├── NGS-course-note-5-2.jpg ├── NGS-course-note-6.jpg ├── NGS-course-note-7.jpg ├── NGS-course-note-8-1.jpg ├── NGS-course-note-8-2.jpg ├── NGS-course-note-9-1.jpg ├── NGS-course-sam-format-2nd-col-flag.png ├── NGS-course-sam-format-last-col.png ├── NGS-course-species-abundance-analysis-16s-workflow.png ├── NGS-course-species-abundance-analysis-16s.png ├── NGS-course-species-abundance-analysis-case.png ├── Note-DragonStarLecture-01_1.jpg ├── Note-DragonStarLecture-01_2.jpg ├── Note-DragonStarLecture-02.jpg ├── Note-DragonStarLecture-03.jpg ├── Note-DragonStarLecture-04.jpg ├── Note-DragonStarLecture-05.jpg ├── Note-DragonStarLecture-06.jpg ├── Note-DragonStarLecture-07_1.jpg ├── Note-DragonStarLecture-07_2.jpg ├── Note-DragonStarLecture-08.jpg ├── Note-DragonStarLecture-09.jpg ├── Note-DragonStarLecture-10.jpg ├── Note-DragonStarLecture-11.jpg ├── Note-DragonStarLecture-12.jpg ├── Note-DragonStarLecture-13_1.jpg ├── Note-DragonStarLecture-13_2.jpg ├── Note-DragonStarLecture-14.jpg ├── Note-DragonStarLecture-15_1.jpg ├── Note-DragonStarLecture-15_2.jpg ├── Note-DragonStarLecture-16.jpg ├── Note-DragonStarLecture-17_1.jpg ├── Note-DragonStarLecture-17_2.jpg ├── Note-DragonStarLecture-18.jpg ├── Note-DragonStarLecture-19_1.jpg ├── Note-DragonStarLecture-19_2.jpg ├── Note-DragonStarLecture-20.jpg ├── Note-DragonStarLecture-21.jpg ├── Note-DragonStarLecture-22.jpg ├── Pangenome-analysis-workflow-assembly-approaches-1.jpg ├── Pangenome-analysis-workflow-assembly-approaches-2.jpg ├── Pangenome-analysis-workflow-assembly-approaches.jpg ├── Pangenome-analysis-workflow.jpg ├── Pangenome-classification.jpg ├── PopulationGenetics-Fst-example.png ├── PopulationGenetics-Fst-formula.png ├── PopulationGenetics-Fst-plot-1.png ├── PopulationGenetics-Fst-plot-2.png ├── README.md ├── RNA-editing-GIREMI-output-format.png ├── RNA-editing-nat-meth-GIREMI-principle.png ├── RNA-editing-nat-meth-introduction-of-mi-formula-conditional-entropy.png ├── RNA-editing-nat-meth-introduction-of-mi-formula-derivation.png ├── RNA-editing-nat-meth-introduction-of-mi-formula-information-entropy.png ├── RNA-editing-nat-meth-introduction-of-mi-formula.png ├── RNA-editing-nat-meth-introduction-of-mi-graphic-explain.jpg ├── RNA-editing-nat-meth-mi-compare.png ├── RNA-editing-nat-meth-mi-formula-pair-site.png ├── RNA-editing-nat-meth-mi-formula-per-site.png ├── RNA-editing-nature-mmPCR-seq.png ├── RNA-editing-sci-rep-pipeline.png ├── RNA-seq-RSEM.png ├── Ref-based-genomeAssem-annotation-transfer-strategy-1-workflow.png ├── Ref-based-genomeAssem-annotation-transfer-strategy-2-workflow.png ├── RunGATK4-VCF-format-1.png ├── RunGATK4-VCF-format-2.png ├── RunGATK4-VCF-format-3.png ├── RunGATK4-VCF-format-4-Genotype.png ├── RunGATK4-VCF-format-4.png ├── RunGATK4-VCF-format-5-INFO.png ├── RunGATK4-VCF-format-5.png ├── RunGATK4-variants-annotation-Annovar.png ├── RunGATK4-variants-annotation-Oncotator-1.png ├── RunGATK4-variants-annotation-Oncotator-2.png ├── RunGATK4-variants-annotation.jpg ├── Strategies-metagenome-access-quality-CheckM-1.png ├── Strategies-metagenome-access-quality-CheckM-2.png ├── Strategies-metagenome-outline.png ├── Strategies-metagenome-taxonomic-label-Kraken2.png ├── StructralVariation-CNV-discovery-CNVkit-workflow.png ├── StructralVariation-CNV-discovery-CNVnator-GCcorrection.png ├── StructralVariation-CNV-discovery-GATK4-workflow.png ├── StructralVariation-CNV-seq-aCGH.jpg ├── StructralVariation-CNV-seq-advantages.jpg ├── StructralVariation-CNV-seq-performance.png ├── StructralVariation-CNV-seq-vs-aCGH.jpg ├── StructralVariation-SVs-detection-principle-ReadDepth-poission.png ├── StructralVariation-SVs-detection-principle-ReadPair-1.png ├── StructralVariation-SVs-detection-principle-ReadPair-2.jpg ├── StructralVariation-SVs-detection-principle-SplitRead.png ├── StructralVariation-SVs-detection-principle-denovo-assembly-1.png ├── StructralVariation-SVs-detection-principle-outline-2.jpg ├── StructralVariation-SVs-detection-principle-outline.png ├── StructralVariation-SVs-types.png ├── StructralVariation-extend-mean-shift-algorithm-2.png ├── StructralVariation-extend-mean-shift-algorithm.png ├── Structural-Variation-CNV-discovery-CNVnator-GCcorrection-formula.jpg ├── StructuralVariation-CNV-discovery-CNVnator-GCcorrection-formula.jpg ├── StructuralVariation-CNV-discovery-CNVnator-meanshift.jpg ├── StructuralVariation-extend-deal-with-similar-segements-confound.png ├── T-cell-sequencing-in-cancers-colorectal-cancer-1.png ├── T-cell-sequencing-in-cancers-colorectal-cancer-2.png ├── T-cell-sequencing-in-cancers-lung-cancer-10.png ├── T-cell-sequencing-in-cancers-lung-cancer-11.png ├── T-cell-sequencing-in-cancers-lung-cancer-12.png ├── T-cell-sequencing-in-cancers-lung-cancer-2.png ├── T-cell-sequencing-in-cancers-lung-cancer-3.png ├── T-cell-sequencing-in-cancers-lung-cancer-4.png ├── T-cell-sequencing-in-cancers-lung-cancer-5.png ├── T-cell-sequencing-in-cancers-lung-cancer-6.png ├── T-cell-sequencing-in-cancers-lung-cancer-7.png ├── T-cell-sequencing-in-cancers-lung-cancer-8.png ├── T-cell-sequencing-in-cancers-lung-cancer-9.png ├── T-cell-sequencing-in-cancers-lung-cancer-mean-sift-algorithmn.gif ├── T-cell-sequencing-in-cancers-lung-cancer.png ├── T-cell-sequencing-in-cancers-lung-method-Chi-Square-test-1.png ├── T-cell-sequencing-in-cancers-lung-method-Chi-Square-test-2.png ├── T-cell-sequencing-in-cancers-lung-method-Fisher-test-1.png ├── T-cell-sequencing-in-cancers-lung-method-Fisher-test-2.png ├── Understand-MetaBin-by-CONCOCT-GMM-1.png ├── Understand-MetaBin-by-CONCOCT-GMM-2.png ├── Understand-MetaBin-by-CONCOCT-k-means.gif ├── hisat2-stringtie-ballgown.png ├── immuSeq-paper-armPCR-primer-design.jpg ├── immuSeq-paper-best-practice-outline-for-data-analysis.png ├── immuSeq-paper-loss-diversity-in-sick-status.jpg ├── immuSeq-paper-machine-learning-application-in-immune-repertoire-case1-2.png ├── immuSeq-paper-machine-learning-application-in-immune-repertoire-case1-3.png ├── immuSeq-paper-machine-learning-application-in-immune-repertoire.jpg ├── immuSeq-paper-orgin-of-CDR3.png ├── immuSeq-paper-survey-01.png ├── immuSeq-paper-survey-02.jpg ├── immuSeq-paper-survey-CDR123-region.png ├── immuSeq-paper-survey-CDR3-struture-identification.png ├── immuSeq-paper-survey-RepSeq-technology-PCR-methods.png ├── immuSeq-paper-survey-RepSeq-technology-overview.png ├── immuSeq-paper-survey-Repertoire-Bias-1.png ├── immuSeq-paper-survey-Repertoire-Bias-2.png ├── immuSeq-paper-survey-Repertoire-Bias-3.png ├── immuSeq-paper-survey-VDJ-annotation-toolkits-pRESTO-1.png ├── immuSeq-paper-survey-VDJ-mapping-GeneFeature-DStructure.png ├── immuSeq-paper-survey-VDJ-mapping-GeneFeature-JStructure.png ├── immuSeq-paper-survey-VDJ-mapping-GeneFeature-VDJAlignmentStructure.png ├── immuSeq-paper-survey-VDJ-mapping-GeneFeature-VDJJunctionStructure.png ├── immuSeq-paper-survey-VDJ-mapping-GeneFeature-VStructure.png ├── immuSeq-paper-survey-VDJ-recombination.png ├── immuSeq-paper-survey-VDJtools.png ├── immuSeq-paper-survey-advanced-CDR3-struture-identification.png ├── immuSeq-paper-survey-basic-fancyspectra.png ├── immuSeq-paper-survey-basic-fancyvj.png ├── immuSeq-paper-survey-basic-segmentusage.png ├── immuSeq-paper-survey-common-used-toolkits-ChangeO-logo.png ├── immuSeq-paper-survey-common-used-toolkits-pRESTO-logo.png ├── immuSeq-paper-survey-diversity-qstat.png ├── immuSeq-paper-survey-diversity-unseen-speices-problem.png ├── immuSeq-paper-survey-error-correction-UMI.png ├── immuSeq-paper-survey-error-correction-mixcr-2.png ├── immuSeq-paper-survey-error-correction-mixcr-3.png ├── immuSeq-paper-survey-error-correction-mixcr.png ├── immuSeq-paper-survey-introduction-1.png ├── 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