├── .github └── workflows │ └── lint.yaml ├── .gitignore ├── CODE_OF_CONDUCT.md ├── CONTRIBUTING.md ├── LICENSE ├── MODEL_CARD.md ├── README.md ├── conda.yaml ├── dinov2 ├── __init__.py ├── configs │ ├── __init__.py │ ├── eval │ │ ├── vitb14_pretrain.yaml │ │ ├── vitg14_pretrain.yaml │ │ ├── vitl14_pretrain.yaml │ │ └── vits14_pretrain.yaml │ ├── ssl_default_config.yaml │ └── train │ │ ├── vitg14.yaml │ │ ├── vitl14.yaml │ │ └── vitl16_short.yaml ├── data │ ├── __init__.py │ ├── adapters.py │ ├── augmentations.py │ ├── collate.py │ ├── datasets │ │ ├── __init__.py │ │ ├── amos.py │ │ ├── brain_tumor.py │ │ ├── btcv.py │ │ ├── btcv_slice.py │ │ ├── chexpert.py │ │ ├── decoders.py │ │ ├── extended.py │ │ ├── image_net.py │ │ ├── image_net_22k.py │ │ ├── mc.py │ │ ├── medical_dataset.py │ │ ├── metadata.py │ │ ├── msd_heart.py │ │ ├── msd_hipp.py │ │ ├── msd_spleen.py │ │ ├── nih_chest_xray.py │ │ ├── sars_cov_2_ct.py │ │ └── shenzhen.py │ ├── loaders.py │ ├── masking.py │ ├── samplers.py │ ├── transforms.py │ ├── utils.py │ └── wrappers.py ├── distributed │ └── __init__.py ├── eval │ ├── __init__.py │ ├── classification │ │ ├── knn.py │ │ ├── linear.py │ │ ├── mlknn.py │ │ └── utils.py │ ├── log_regression.py │ ├── metrics.py │ ├── segmentation │ │ ├── segmentation.py │ │ └── utils.py │ ├── setup.py │ └── utils.py ├── fsdp │ └── __init__.py ├── layers │ ├── __init__.py │ ├── attention.py │ ├── block.py │ ├── dino_head.py │ ├── drop_path.py │ ├── layer_scale.py │ ├── mlp.py │ ├── patch_embed.py │ └── swiglu_ffn.py ├── logging │ ├── __init__.py │ └── helpers.py ├── loss │ ├── __init__.py │ ├── dino_clstoken_loss.py │ ├── ibot_patch_loss.py │ └── koleo_loss.py ├── models │ ├── __init__.py │ ├── transunet.py │ ├── unet.py │ └── vision_transformer.py ├── run │ ├── __init__.py │ ├── eval │ │ ├── knn.py │ │ ├── linear.py │ │ ├── log_regression.py │ │ ├── mlknn.py │ │ └── segmentation.py │ ├── submit.py │ └── train │ │ └── train.py ├── train │ ├── __init__.py │ ├── ssl_meta_arch.py │ └── train.py ├── utils │ ├── __init__.py │ ├── cluster.py │ ├── config.py │ ├── dtype.py │ ├── param_groups.py │ └── utils.py └── visualization │ ├── btcv │ ├── 1.png │ ├── 1_pca.png │ ├── 2.png │ ├── 2_pca.png │ ├── 3.png │ ├── 3_pca.png │ ├── 4.png │ ├── 4_pca.png │ └── t │ │ ├── img0006_115.png │ │ ├── img0006_121.png │ │ ├── img0008_135.png │ │ └── img0008_139.png │ ├── covid │ ├── 1.png │ ├── 1_pca.png │ ├── 2.png │ ├── 2_pca.png │ ├── 3.png │ ├── 3_pca.png │ ├── 4.png │ └── 4_pca.png │ ├── few-shot_mc.png │ ├── few-shot_nih.png │ ├── generate_vis.ipynb │ ├── heart │ ├── 1.png │ ├── 1_pca.png │ ├── 2.png │ ├── 2_pca.png │ ├── 3.png │ ├── 3_pca.png │ ├── 4.png │ └── 4_pca.png │ ├── nih_images │ ├── img_1.png │ ├── img_1_pca.png │ ├── img_2.png │ ├── img_2_pca.png │ ├── img_3.png │ ├── img_3_pca.png │ ├── img_4.png │ └── img_4_pca.png │ ├── pca.ipynb │ └── qualitative_segmentations.py ├── exprements.ipynb ├── hubconf.py ├── pyproject.toml ├── 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