├── .Rbuildignore ├── .gitignore ├── DESCRIPTION ├── LICENSE ├── MBP-logo.png ├── Makefile ├── NAMESPACE ├── NEWS.md ├── R ├── dendrogram.R ├── grid_util.R ├── heatmap.R ├── order.R ├── plot.R ├── samesum.R ├── shiny_plots.R ├── shiny_report.R ├── shiny_util.R └── varistran.R ├── README.md ├── _pkgdown.yml ├── codemeta.json ├── doc ├── biplot-example.png ├── heatmap-example.png └── varistran-poster-abacbs-2015.pdf ├── index.md ├── inst └── CITATION ├── man ├── call_ui.Rd ├── composable_shiny_app.Rd ├── ensure_reactable.Rd ├── ensure_reactive.Rd ├── heatmap_grob.Rd ├── make_ordering.Rd ├── ordering_grob.Rd ├── plot_biplot.Rd ├── plot_heatmap.Rd ├── plot_stability.Rd ├── run_as_gadget.Rd ├── samesum_log2_norm.Rd ├── shiny_biplot.Rd ├── shiny_filter.Rd ├── shiny_heatmap.Rd ├── shiny_mds_plot.Rd ├── shiny_plot.Rd ├── shiny_report.Rd ├── shiny_stability.Rd ├── shiny_vst.Rd ├── shrinktext_grob.Rd ├── signed_colors.Rd ├── unsigned_colors.Rd ├── varistran_grob.Rd ├── vertical_shrinktext_grob.Rd ├── vst.Rd └── vst_advice.Rd ├── paper.bib ├── paper.md ├── test ├── advice.R ├── biplot.R ├── common.R ├── heatmap.R ├── heatmap_big.R ├── pathological.R ├── shiny.R ├── vst_plot.R └── vst_stability_plots.R └── vignettes ├── samesum.Rmd └── vst.Rmd /.Rbuildignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MonashBioinformaticsPlatform/varistran/HEAD/.Rbuildignore -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MonashBioinformaticsPlatform/varistran/HEAD/.gitignore -------------------------------------------------------------------------------- /DESCRIPTION: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/MonashBioinformaticsPlatform/varistran/HEAD/DESCRIPTION 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