├── .github ├── actions │ ├── buildhdf5 │ │ └── action.yml │ ├── buildmpich │ │ └── action.yml │ ├── buildnetcdf │ │ └── action.yml │ ├── buildnetcdff │ │ └── action.yml │ ├── buildopenmpi │ │ └── action.yml │ ├── buildpnetcdf │ │ └── action.yml │ ├── intelcompilers │ │ └── action.yml │ ├── parallelio_autotools │ │ └── action.yml │ └── parallelio_cmake │ │ └── action.yml └── workflows │ ├── autotools.yml │ ├── cmake.yml │ ├── cmake_ubuntu_latest.yml │ ├── netcdf_hdf5_no_pnetcdf_ncint_mpich.yml │ ├── netcdf_hdf5_pnetcdf_ncint_mpich_asan.yml │ ├── netcdf_pnetcdf_openmpi.yml │ └── strict_autotools_ubuntu_latest.yml ├── .gitignore ├── CMakeLists.txt ├── CTestConfig.cmake ├── CTestScript.cmake ├── LICENSE ├── Makefile.am ├── README.md ├── cmake ├── FindGPTL.cmake ├── FindHDF5.cmake ├── FindLIBRT.cmake ├── FindLIBZ.cmake ├── FindMPE.cmake ├── FindMPISERIAL.cmake ├── FindNetCDF.cmake ├── FindPAPI.cmake ├── FindPnetCDF.cmake ├── FindSZIP.cmake ├── LibCheck.cmake ├── LibFind.cmake ├── LibMPI.cmake ├── Makefile.am ├── PIOConfig.cmake.in ├── TryHDF5_HAS_SZIP.c ├── TryNetCDF_DAP.c ├── TryNetCDF_PARALLEL.c ├── TryNetCDF_PNETCDF.c ├── mpiexec.alcf ├── mpiexec.ncsa ├── mpiexec.nersc ├── mpiexec.nwscla └── mpiexec.olcf ├── cmake_config.h.in ├── configure.ac ├── ctest ├── CTestEnvironment-alcf.cmake ├── CTestEnvironment-anlworkstation.cmake ├── CTestEnvironment-cgd.cmake ├── CTestEnvironment-ncsa.cmake ├── CTestEnvironment-nersc.cmake ├── CTestEnvironment-nwscla.cmake ├── CTestEnvironment-unknown.cmake ├── CTestScript-Test.cmake ├── runcdash-alcf-ibm.sh ├── runcdash-anlworkstation.sh ├── runcdash-cgd-gnu-openmpi.sh ├── runcdash-cgd-nag.sh ├── runcdash-nersc-cray.sh ├── runcdash-nersc-intel.sh ├── runcdash-nwsc-intel-mpiserial.sh ├── runcdash-nwsc-intel.sh ├── runcdash-nwscla-gnu.sh ├── runcdash-nwscla-intel.sh ├── runcdash-nwscla-pgi.sh ├── runctest-alcf.sh ├── runctest-anlworkstation.sh ├── runctest-cgd.sh ├── runctest-ncsa.sh ├── runctest-nersc.sh ├── runctest-nwscla.sh └── runctest-unknown.sh ├── doc ├── CMakeFiles │ ├── 3.2.3 │ │ └── CMakeSystem.cmake │ ├── CMakeOutput.log │ └── cmake.check_cache ├── CMakeLists.txt ├── Doxyfile.in ├── DoxygenLayout.xml ├── Makefile.am ├── customdoxygen.css ├── doxygen.sty ├── images │ ├── I_O_on_Few.png │ ├── I_O_on_Many_Async.png │ ├── I_O_on_Many_Intracomm.png │ ├── I_O_on_many_async_small.png │ ├── Makefile.am │ ├── PIO_Async.png │ ├── PIO_Decomposition.png │ ├── PIO_Intracomm1.png │ ├── PIO_Library_Architecture1.jpg │ ├── baseimage.graffle │ ├── block-cyclic-rearr.eps │ ├── block-cyclic-rearr.graffle │ ├── block-cyclic-rearr.png │ ├── block-cyclic.eps │ ├── block-cyclic.graffle │ ├── block-cyclic.png │ ├── dof-rearr.eps │ ├── dof-rearr.graffle │ ├── dof-rearr.png │ ├── dof.eps │ ├── dof.graffle │ └── dof.png └── source │ ├── CAMexample.txt │ ├── Decomp.txt │ ├── Error.txt │ ├── Examples.txt │ ├── Installing.txt │ ├── Introduction.txt │ ├── Makefile.am │ ├── Testing.txt │ ├── api.txt │ ├── base.txt │ ├── c_api.txt │ ├── contributing_code.txt │ ├── example │ ├── errorhandle │ ├── simple-bc │ ├── simple-bc-rearr │ ├── simple-bc-rearr-pe1 │ ├── simple-bc-rearr-pe2 │ ├── simple-dof │ └── simple-dof-rearr │ ├── faq.txt │ ├── iosystem.txt │ ├── mach_walkthrough.txt │ ├── netcdf_integration.txt │ ├── testpio_example.txt │ └── users_guide.txt ├── examples ├── CMakeLists.txt ├── Makefile.am ├── basic │ ├── CAM05.csh │ ├── CMakeLists.txt │ ├── MPASA30km.csh │ ├── MPASA60km.csh │ ├── POPB.csh │ ├── POPC.csh │ ├── POPD.csh │ ├── POPDv0.csh │ ├── POPDv1.csh │ ├── POPDv2.csh │ ├── POPDv3.csh │ ├── POPDv4.csh │ ├── POPDv5.csh │ ├── README.testpio │ ├── WRFB.csh │ ├── alloc_mod.F90.in │ ├── build_defaults.xml │ ├── check_mod.F90 │ ├── config_bench.xml │ ├── fdepends.awk │ ├── gdecomp_mod.F90 │ ├── kinds_mod.F90 │ ├── kraken.128.csh │ ├── kraken.1K.csh │ ├── kraken.256.csh │ ├── kraken.512.csh │ ├── kraken.64.csh │ ├── namelist_mod.F90 │ ├── namelists │ │ ├── testpio_in.apb05 │ │ ├── testpio_in.asb01 │ │ ├── testpio_in.asb04 │ │ ├── testpio_in.n4b01 │ │ ├── testpio_in.n4b02 │ │ ├── testpio_in.n4b03 │ │ ├── testpio_in.n4b04 │ │ ├── testpio_in.n4b05 │ │ ├── testpio_in.n4b06 │ │ ├── testpio_in.n4b07 │ │ ├── testpio_in.n4b08 │ │ ├── testpio_in.n4n01 │ │ ├── testpio_in.n4n02 │ │ ├── testpio_in.n4n03 │ │ ├── testpio_in.pb01 │ │ ├── testpio_in.pb02 │ │ ├── testpio_in.pb03 │ │ ├── testpio_in.pb04 │ │ ├── testpio_in.pb05 │ │ ├── testpio_in.pb06 │ │ ├── testpio_in.pb07 │ │ ├── testpio_in.pb08 │ │ ├── testpio_in.pn01 │ │ ├── testpio_in.pn02 │ │ ├── testpio_in.pn03 │ │ ├── testpio_in.ps01 │ │ ├── testpio_in.ps02 │ │ ├── testpio_in.ps03 │ │ ├── testpio_in.ps04 │ │ ├── testpio_in.ps05 │ │ ├── testpio_in.ps06 │ │ ├── testpio_in.ps07 │ │ ├── testpio_in.ps08 │ │ ├── testpio_in.sb01 │ │ ├── testpio_in.sb02 │ │ ├── testpio_in.sb03 │ │ ├── testpio_in.sb04 │ │ ├── testpio_in.sb05 │ │ ├── testpio_in.sb06 │ │ ├── testpio_in.sb07 │ │ ├── testpio_in.sb08 │ │ ├── testpio_in.sn01 │ │ ├── testpio_in.sn02 │ │ ├── testpio_in.sn03 │ │ ├── testpio_in.wr01 │ │ └── testpio_in.wr02 │ ├── perl5lib │ │ ├── ChangeLog │ │ ├── README │ │ └── XML │ │ │ ├── Changes │ │ │ ├── Lite.pm │ │ │ ├── Lite │ │ │ └── Element.pm │ │ │ ├── README │ │ │ └── man3 │ │ │ ├── XML_Lite.3 │ │ │ └── XML_Lite_Element.3 │ ├── test.csh │ ├── testdecomp.F90 │ ├── testdecomp.bluefire.run │ ├── testdecomp_in │ ├── testpio.F90 │ ├── testpio_bench.pl │ ├── testpio_build.pl │ ├── testpio_run.pl │ ├── utils_mod.F90 │ ├── wstest.c │ └── ystest.sh ├── c │ ├── CMakeLists.txt │ ├── Makefile.am │ ├── darray_async.c │ ├── darray_no_async.c │ ├── example1.c │ ├── example2.c │ ├── examplePio.c │ ├── piorcw.c │ ├── run_tests.sh.in │ └── valsupp_example1.supp ├── cxx │ ├── CMakeLists.txt │ └── examplePio.cxx └── f03 │ ├── CMakeLists.txt │ ├── Makefile.am │ ├── exampleAsyncPio.F90 │ ├── examplePio.F90 │ └── run_tests.sh.in ├── libpio.settings.in ├── scripts ├── Makefile.am ├── genf90.pl └── prune_decomps.pl ├── src ├── CMakeLists.txt ├── Makefile.am ├── clib │ ├── CMakeLists.txt │ ├── Makefile.am │ ├── parallel_sort.c │ ├── parallel_sort.h │ ├── pio.h │ ├── pio_darray.c │ ├── pio_darray_int.c │ ├── pio_error.c │ ├── pio_error.h │ ├── pio_file.c │ ├── pio_get_nc.c │ ├── pio_get_vard.c │ ├── pio_getput_int.c │ ├── pio_internal.h │ ├── pio_lists.c │ ├── pio_meta.h.in │ ├── pio_msg.c │ ├── pio_nc.c │ ├── pio_nc4.c │ ├── pio_put_nc.c │ ├── pio_put_vard.c │ ├── pio_rearrange.c │ ├── pio_spmd.c │ ├── pioc.c │ ├── pioc_async.c │ ├── pioc_sc.c │ ├── pioc_support.c │ ├── topology.c │ └── uthash.h ├── flib │ ├── CMakeLists.txt │ ├── Makefile.am │ ├── ncint_mod.F90 │ ├── pio.F90 │ ├── pio_kinds.F90 │ ├── pio_nf.F90 │ ├── pio_support.F90 │ ├── pio_types.F90 │ ├── piodarray.F90.in │ ├── piolib_mod.F90 │ ├── pionfatt_mod.F90.in │ ├── pionfget_mod.F90.in │ └── pionfput_mod.F90.in ├── gptl │ ├── CMakeLists.txt │ ├── COPYING │ ├── ChangeLog │ ├── GPTLget_memusage.c │ ├── GPTLprint_memusage.c │ ├── GPTLutil.c │ ├── Makefile.am │ ├── README │ ├── f_wrappers.c │ ├── f_wrappers_2.c │ ├── gptl.c │ ├── gptl.h │ ├── gptl.inc │ ├── gptl_papi.c │ ├── perf_mod.F90 │ ├── perf_utils.F90 │ ├── private.h │ └── threadutil.c └── ncint │ ├── Makefile.am │ ├── nc_get_vard.c │ ├── nc_put_vard.c │ ├── ncint_pio.c │ ├── ncintdispatch.c │ └── ncintdispatch.h └── tests ├── CMakeLists.txt ├── Makefile.am ├── cperf ├── CMakeLists.txt ├── mpi_argp.c └── piodecomptest.c ├── cunit ├── CMakeLists.txt ├── Makefile.am ├── pio_tests.h ├── run_tests.sh.in ├── test_async_1d.c ├── test_async_3proc.c ├── test_async_4proc.c ├── test_async_manyproc.c ├── test_async_mpi.c ├── test_async_multi2.c ├── test_async_multicomp.c ├── test_async_perf.c ├── test_async_simple.c ├── test_common.c ├── test_darray.c ├── test_darray_1d.c ├── test_darray_2sync.c ├── test_darray_3d.c ├── test_darray_append.c ├── test_darray_async.c ├── test_darray_async_from_comm.c ├── test_darray_async_many.c ├── test_darray_async_simple.c ├── test_darray_fill.c ├── test_darray_frame.c ├── test_darray_lossycompress.c ├── test_darray_multi.c ├── test_darray_multivar.c ├── test_darray_multivar2.c ├── test_darray_multivar3.c ├── test_darray_vard.c ├── test_decomp_frame.c ├── test_decomp_uneven.c ├── test_decomps.c ├── test_intercomm2.c ├── test_iosystem2.c ├── test_iosystem2_simple.c ├── test_iosystem2_simple2.c ├── test_iosystem3.c ├── test_iosystem3_simple.c ├── test_iosystem3_simple2.c ├── test_perf2.c ├── test_pioc.c ├── test_pioc_fill.c ├── test_pioc_putget.c ├── test_pioc_unlim.c ├── test_rearr.c ├── test_shared.c ├── test_simple.c └── test_spmd.c ├── derecho_testsuite.py ├── doftests ├── CMakeLists.txt └── dofcopy.F90 ├── fncint ├── Makefile.am ├── ftst_pio.f90 ├── ftst_pio_orig.f90 ├── run_tests.sh.in └── tst_c_pio.c ├── general ├── CMakeLists.txt ├── Makefile.am ├── README.md ├── ncdf_fail.F90.in ├── ncdf_get_put.F90.in ├── ncdf_inq.F90.in ├── ncdf_simple_tests.F90.in ├── pio_decomp_fillval.F90.in ├── pio_decomp_frame_tests.F90.in ├── pio_decomp_tests.F90.in ├── pio_decomp_tests_1d.F90.in ├── pio_decomp_tests_2d.F90.in ├── pio_decomp_tests_2d_async.F90.in ├── pio_decomp_tests_2d_halo.F90.in ├── pio_decomp_tests_3d.F90.in ├── pio_decomphalo_tests_2d.F90.in ├── pio_fail.F90.in ├── pio_file_fail.F90.in ├── pio_file_simple_tests.F90.in ├── pio_filter_tests.F90.in ├── pio_init_finalize.F90.in ├── pio_iosystem_async_tests.F90.in ├── pio_iosystem_tests.F90.in ├── pio_iosystem_tests2.F90.in ├── pio_iosystem_tests3.F90.in ├── pio_rearr.F90.in ├── pio_rearr_opts.F90.in ├── pio_rearr_opts2.F90.in ├── run_tests.sh.in ├── test_memleak.c └── util │ ├── Makefile.am │ ├── pio_tf_f90gen.pl │ └── pio_tutil.F90 ├── ncint ├── CMakeLists.txt ├── Makefile.am ├── ncint.h ├── pio_err_macros.h ├── run_perf.sh.in ├── run_tests.sh.in ├── tst_async_multi.c ├── tst_ncint_async_perf.c ├── tst_ncint_open.c ├── tst_ncint_perf.c ├── tst_pio_async.c ├── tst_pio_udf.c └── tst_var_compress.c ├── performance ├── CMakeLists.txt ├── Makefile.am ├── 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