├── .babelrc ├── .eslintrc.json ├── .gitignore ├── CODE_OF_CONDUCT.md ├── LICENSE ├── README.md ├── assets ├── css │ └── style.css └── images │ ├── failure.png │ ├── favicon.ico │ ├── loading.gif │ ├── network.png │ ├── revoked.png │ └── success.png ├── config.json ├── deploy ├── backend │ ├── .env │ ├── docker-compose.yml │ └── rabbitmq │ │ ├── Dockerfile │ │ └── init.sh ├── kubernetes │ ├── README.MD │ ├── backend_deployment.yaml │ ├── backend_service.yaml │ ├── logs_persistence.yaml │ ├── manager_deployment.yaml │ ├── manager_service.yaml │ ├── postgres_persistence.yaml │ ├── proxy_deployment.yaml │ ├── proxy_service.yaml │ └── shared_persistence.yaml ├── manager │ ├── .env │ ├── Dockerfile │ ├── docker-compose.yml │ ├── manager_answer_worker.sh │ ├── manager_pubmed_worker.sh │ ├── manager_update_worker.sh │ ├── requirements.txt │ ├── startup.sh │ └── supervisord.conf ├── postgraphile │ └── main.sh ├── proxy │ ├── Dockerfile │ ├── configs │ │ ├── default.conf.template │ │ └── ssl.conf │ ├── docker-compose.yml │ └── startup.sh └── startup.sh ├── doc ├── centos_installation.md ├── releasenotes.md └── templates.md ├── environment.yml ├── helpers └── backup-scripts │ ├── back-up-redis.sh │ └── restore-redis.sh ├── manager ├── __init__.py ├── a_blueprint.py ├── answer.py ├── answer_question.py ├── api │ ├── concept_map.json │ ├── definitions.py │ ├── definitions2.py │ ├── graphql.py │ ├── messages_api.py │ ├── misc_api.py │ ├── q_api.py │ ├── schema.py │ └── simple_api.py ├── base.py ├── celery_monitor.py ├── feedback.py ├── initialize_manager.py ├── json_encoder.py ├── logging_config.py ├── q_blueprint.py ├── questions_blueprint.py ├── robokop_flask_config.py ├── server.py ├── setup.py ├── setup_db.py ├── tables.py ├── tables_accessors.py ├── task.py ├── tasks.py ├── user.py ├── util.py └── wsgi.py ├── package.json ├── queries ├── cop_disease.json ├── cop_phenotype.json ├── expand.json ├── index.js ├── repurposing_by_gene.json ├── wf1mod1.json ├── wf1mod1_with_gene.json ├── wf1mod1_with_process.json ├── wf1mod2_direct.json ├── wf1mod2_expanded.json ├── wf1mod2_relevant_expanded.json ├── wf1mod3.json ├── wf1mod3_v2.json ├── wf2mod1a.json ├── wf2mod1a_v2.json ├── wf2mod1d.json ├── wf2mod1d_v2.json ├── wf2mod2.json ├── wf4.json ├── wf4_phenotype.json └── wf5.json ├── scripting ├── __init__.py ├── example_viewer.py ├── job_lists │ ├── cops.csv │ ├── cops_new.csv │ ├── cops_test.csv │ ├── icess_chemicals.csv │ └── icess_drugs.csv ├── managerJobSubmitter.py └── managerJobSubmitterExample.py ├── src ├── Activity.jsx ├── Answerset.jsx ├── AppConfig.jsx ├── MultiSearch.jsx ├── Question.jsx ├── QuestionList.jsx ├── QuestionNewLinear.jsx ├── SimpleEnriched.jsx ├── SimpleExpand.jsx ├── SimplePublications.jsx ├── SimpleSimilarity.jsx ├── SimpleViewer.jsx ├── Synonymize.jsx ├── TermsofService.jsx ├── components │ ├── Footer.jsx │ ├── Header.jsx │ ├── Loading.jsx │ ├── activity │ │ ├── ActivityPres.jsx │ │ └── ActivityTableAgGrid.jsx │ ├── answerset │ │ ├── AnswersetGraph.jsx │ │ ├── AnswersetInteractive.jsx │ │ ├── AnswersetInteractiveSelector.jsx │ │ ├── AnswersetList.jsx │ │ ├── AnswersetPres.jsx │ │ ├── AnswersetSummary.jsx │ │ ├── AnswersetTable.jsx │ │ ├── AnswersetTableSubComponent.jsx │ │ ├── MessageAnswersetPres.jsx │ │ └── MessageAnswersetTable.jsx │ ├── newQuestion │ │ ├── QuestionNew.jsx │ │ ├── SimpleQuestion.jsx │ │ ├── newQuestion.css │ │ ├── panels │ │ │ ├── EdgePanel.jsx │ │ │ ├── NewQuestionPanelModal.jsx │ │ │ ├── NodePanel.jsx │ │ │ ├── NodeProperties.jsx │ │ │ └── panels.css │ │ └── subComponents │ │ │ ├── ButtonGroupPanel.jsx │ │ │ ├── MachineQuestionEditor.jsx │ │ │ ├── MachineQuestionViewContainer.jsx │ │ │ ├── NewQuestionButtons.jsx │ │ │ ├── QuestionBuilder.jsx │ │ │ ├── QuestionListModal.jsx │ │ │ ├── QuestionTemplate.jsx │ │ │ ├── QuickQuestionError.jsx │ │ │ └── SimpleQuestionGraph.jsx │ ├── promotedCarousel │ │ ├── PromotedCarousel.jsx │ │ └── promotedCarousel.css │ ├── question │ │ ├── AnswersetList.jsx │ │ ├── AnswersetSelector.jsx │ │ └── QuestionPres.jsx │ ├── questionList │ │ ├── QuestionListPres.jsx │ │ └── QuestionListTableAgGrid.jsx │ ├── questionNewLinear │ │ ├── QuestionLinearEditor.jsx │ │ ├── QuestionLinearEditorCard.jsx │ │ ├── QuestionLinearGraph.jsx │ │ └── QuestionNewPres.jsx │ ├── shared │ │ ├── AnswerExplorer.jsx │ │ ├── AnswerExplorerInfo.jsx │ │ ├── AnswersetFilter.jsx │ │ ├── DownloadButton.jsx │ │ ├── FeedbackEditor.jsx │ │ ├── FeedbackExplorer.jsx │ │ ├── HelpButton.jsx │ │ ├── InputOptions.jsx │ │ ├── LabeledFormGroup.jsx │ │ ├── PubmedEntry.jsx │ │ ├── PubmedList.jsx │ │ ├── QuestionDesign.jsx │ │ ├── QuestionHeader.jsx │ │ ├── QuestionToolbar.jsx │ │ ├── curies │ │ │ ├── BionamesBrowser.jsx │ │ │ ├── CurieSelector.jsx │ │ │ └── CurieSelectorContainer.jsx │ │ ├── graphs │ │ │ ├── MachineQuestionView.jsx │ │ │ ├── QuestionGraphViewer.jsx │ │ │ └── SubGraphViewer.jsx │ │ └── modals │ │ │ ├── LoadingNlpQuestion.jsx │ │ │ ├── TaskLogs.jsx │ │ │ └── TasksModal.jsx │ └── util │ │ ├── colorUtils.js │ │ ├── ctdUrls.js │ │ ├── curieUrls.js │ │ ├── entityNameDisplay.js │ │ ├── questionNewCardTypes.js │ │ ├── questionTemplates.js │ │ ├── rtColumnWidth.js │ │ ├── runningTaskFilter.js │ │ └── topologicalsort.js ├── index.jsx ├── pages │ └── alpha │ │ ├── Alpha.jsx │ │ ├── NeighborhoodViewer.jsx │ │ ├── NodeDetails.jsx │ │ ├── alpha.css │ │ └── mainContents.jsx ├── simplePages │ ├── About.jsx │ ├── Apps.jsx │ ├── Guide.jsx │ ├── Help.jsx │ ├── Landing.jsx │ └── simplecss.css └── stores │ ├── answersetStore.js │ ├── messageAnswersetStore.js │ └── newQuestionStore.js ├── templates ├── about.html ├── activity.html ├── alpha.html ├── answerset.html ├── apps.html ├── compare.html ├── guide.html ├── help.html ├── landing.html ├── question.html ├── questionNew.html ├── questionNewLinear.html ├── questions.html ├── search.html ├── security │ ├── _macros.html │ ├── _menu.html │ ├── _messages.html │ ├── base.html │ ├── change_password.html │ ├── email │ │ ├── change_notice.html │ │ ├── change_notice.txt │ │ ├── confirmation_instructions.html │ │ ├── confirmation_instructions.txt │ │ ├── login_instructions.html │ │ ├── login_instructions.txt │ │ ├── reset_instructions.html │ │ ├── reset_instructions.txt │ │ ├── reset_notice.html │ │ ├── reset_notice.txt │ │ ├── welcome.html │ │ └── welcome.txt │ ├── forgot_password.html │ ├── login_user.html │ ├── register_user.html │ ├── reset_password.html │ ├── send_confirmation.html │ └── send_login.html ├── simpleEnriched.html ├── simpleExpand.html ├── simplePublications.html ├── simpleQuestion.html ├── simpleSimilarity.html ├── simpleView.html ├── synonymize.html └── termsofService.html ├── webpack.common.js ├── webpack.dev.js └── webpack.prod.js /.babelrc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NCATS-Gamma/robokop/HEAD/.babelrc -------------------------------------------------------------------------------- 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