├── .gitignore ├── Data_Fetcher_testing.nf ├── Dockerfile ├── FlowBio.nf ├── README.md ├── ToDo.md ├── bin ├── Adapter_Trimming.sh ├── Adapter_Trimming_1.sh ├── Coverage_Mapping.sh ├── Data_Fetcher.sh ├── Quality_Assessment.sh ├── Quality_Assessment_1.sh ├── Quality_Assessment_NanoPlot.sh ├── Quality_Trimming.sh ├── Read_Mapping.sh ├── SAM_Processing_Picard.sh ├── SAM_Processing_SAMtools.sh └── Variant_Analysis_Other.sh ├── conf ├── FlowBio_Base.config ├── Quality_Assessment_NanoPlot.config ├── base.config └── test.config ├── dependencies.sh ├── docs └── README.md ├── images ├── logo.png ├── pipeline.png ├── unnamed.png └── usage_overview.png └── test_data ├── sample.list ├── testfasta.fq └── testfasta_with_primer_sequence.txt /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NCBI-Hackathons/FlowBio/HEAD/.gitignore -------------------------------------------------------------------------------- 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