├── .gitignore ├── Figure1_SVC.jpg ├── LICENSE ├── README.md ├── example.cfg ├── functional_test_case_make_gvf_and_bedgraph_nstd45.tar.gz ├── link_to_dbVar_presentation.md ├── make_dbVar_reference_2.py ├── py ├── analytics.py ├── create_dictionary.py ├── download_data.py ├── filter │ └── filtered_data.gvf ├── filter_rg_gvf.py ├── filter_rg_gvf_mod.py ├── generate_report.py ├── gvf_annotation.py ├── make_dbVar_reference.py ├── make_dbVar_reference_2.py ├── make_gvf_and_bedgraph.py ├── merge_data.py ├── plot.py ├── readme.md ├── report_template.html ├── requirements.txt ├── setup.py ├── test.png └── utils.py ├── raw_variant_statistics.pdf ├── ref └── GRCh38_chrom_size.txt ├── scripts ├── GRCh38.chromsizes ├── fetchChromSizes ├── gvfToWig ├── gvfToWig.sh ├── main.sh ├── tab2gvf.pl ├── wigToBigWig └── wigToBigWig.sh ├── track_hub ├── genomes_dbVar_merge.txt ├── hg38 │ ├── BigWig │ │ ├── copy_number_gain_dbVar.bwig │ │ └── sample_gvf.bwig │ └── trackDb_dbVar_merge.txt └── hub_dbVar_merge.txt └── wig ├── copy_number_gain_dbVar.wig3 └── sample_gvf.wig /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NCBI-Hackathons/Structural_Variant_Comparison/HEAD/.gitignore -------------------------------------------------------------------------------- /Figure1_SVC.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NCBI-Hackathons/Structural_Variant_Comparison/HEAD/Figure1_SVC.jpg -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NCBI-Hackathons/Structural_Variant_Comparison/HEAD/LICENSE -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- 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