├── .gitignore ├── Browse.php ├── FCD-helpers.php ├── Find_CalibrationsByFossils.php ├── Find_CalibrationsByTips.php ├── Footer.txt ├── LICENSE.txt ├── PastedGraphic-1.png ├── README.md ├── Show_Calibration.php ├── about.php ├── autocomplete_all_names.php ├── autocomplete_publications.php ├── autocomplete_species.php ├── config.php.EXAMPLE ├── css ├── fcd-theme │ ├── images │ │ ├── ui-bg_diagonals-small_80_ffffff_40x40.png │ │ ├── ui-bg_flat_25_ffffff_40x100.png │ │ ├── ui-bg_flat_30_cccccc_40x100.png │ │ ├── ui-bg_glass_40_ffc73d_1x400.png │ │ ├── ui-bg_highlight-hard_20_0972a5_1x100.png │ │ ├── ui-bg_highlight-soft_33_003147_1x100.png │ │ ├── ui-bg_highlight-soft_35_222222_1x100.png │ │ ├── ui-bg_highlight-soft_44_444444_1x100.png │ │ ├── ui-bg_highlight-soft_80_eeeeee_1x100.png │ │ ├── ui-icons_222222_256x240.png │ │ ├── ui-icons_223363_256x240.png │ │ ├── ui-icons_555555_256x240.png │ │ ├── ui-icons_a83300_256x240.png │ │ ├── ui-icons_cccccc_256x240.png │ │ └── ui-icons_ffffff_256x240.png │ ├── jquery-ui-1.9.2.custom.css │ └── jquery-ui-1.9.2.custom.min.css ├── site-4.css ├── site-4a.css ├── site.css ├── tagit-awesome-blue.css ├── tagit-awesome-orange.css ├── tagit-dark-grey.css ├── tagit-simple-blue.css ├── tagit-simple-green.css ├── tagit-simple-grey.css ├── tagit-stylish-yellow.css └── ui-anim_basic_16x16.gif ├── db ├── FossilCalibration.sql ├── ReadMe.txt ├── database-migration-001.sql ├── database-migration-002.sql ├── database-migration-003.sql ├── database-migration-004.sql ├── database-migration-005.sql ├── database-migration-006.sql ├── database-migration-007.sql ├── database-migration-008.sql ├── database-migration-009.sql ├── database-migration-010.sql ├── database-migration-011.sql ├── database-migration-012.sql ├── gathering-landmark-NCBI-ids.txt ├── multitree-procedures.sql ├── stored-procedures.sql └── submission-test.sql ├── do_login.php ├── faq.php ├── favicon.ico ├── fetch-search-results.php ├── fetch_taxon_properties.php ├── footer.php ├── header.php ├── help.php ├── images ├── add-filter.png ├── archosauria.jpeg ├── blocked-filter.png ├── flag-icon.png ├── flag-icon.xcf ├── header-logo-bw.png ├── header-logo-dark.png ├── header-logo-light.png ├── insecta.jpeg ├── meeting-0.jpg ├── meeting-1.jpg ├── meeting-2.jpg ├── meeting-3.jpg ├── meeting-4-ORIG.jpg ├── meeting-4.jpg ├── meeting-4a.jpg ├── remove-filter.png ├── result-ancestor1.jpg ├── result-ancestor2.jpg ├── result-member.jpg ├── result-mrca.jpg ├── result-neutral.jpg ├── result-tip.jpg ├── search-button.png ├── status-black.png ├── status-green.png ├── status-red.png └── status-yellow.png ├── index.php ├── jquery-ui-test.html ├── js ├── jquery-1.8.3.js ├── jquery-ui-1.9.2.custom.js ├── jquery-ui-1.9.2.custom.min.js ├── jquery.complete-placeholder.min.js └── tagit.js ├── login.php ├── logout.php ├── ncbi-update ├── README.md ├── compare-after-NCBI-update.sql ├── refreshCalibrationsByClade.sql ├── stash-before-NCBI-update.sql ├── stashPinnedLineages.sql └── update-NCBI-from-dump.sql ├── protected ├── .htaccess.EXAMPLE ├── README.md ├── REBUILD_ALL_CALIBRATION_TREES.sql ├── UPDATE_AUTOCOMPLETE.sql ├── UPDATE_CALIBRATIONS_BY_CLADE.sql ├── UPDATE_MULTITREE.sql ├── delete_calibration.php ├── delete_collection.php ├── delete_fossil.php ├── delete_locality.php ├── delete_publication.php ├── edit_calibration.php ├── edit_collection.php ├── edit_fossil.php ├── edit_locality.php ├── edit_publication.php ├── edit_site_announcement.php ├── fetch_custom_tree_preview.php ├── fetch_matching_hint_node.php ├── index.php ├── manage_calibrations.php ├── manage_collections.php ├── manage_fossils.php ├── manage_localities.php ├── manage_publications.php ├── remote_operation.php ├── remote_operation_FORKING.php ├── single_fossil_panel.php ├── update_calibration.php ├── update_collection.php ├── update_fossil.php ├── update_locality.php ├── update_publication.php └── update_site_announcement.php ├── publication_image.php ├── search.php ├── site-announcement.php ├── unified-search-2.php ├── unified-search-2a.php ├── unified-search-3.php ├── unified-search-3a.php ├── unified-search-4.php ├── unified-search-4a.php ├── unified-search-5.php └── unified-search.php /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/.gitignore -------------------------------------------------------------------------------- /Browse.php: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/Browse.php -------------------------------------------------------------------------------- /FCD-helpers.php: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/FCD-helpers.php -------------------------------------------------------------------------------- /Find_CalibrationsByFossils.php: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/Find_CalibrationsByFossils.php -------------------------------------------------------------------------------- /Find_CalibrationsByTips.php: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/Find_CalibrationsByTips.php -------------------------------------------------------------------------------- /Footer.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/Footer.txt -------------------------------------------------------------------------------- /LICENSE.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/LICENSE.txt -------------------------------------------------------------------------------- /PastedGraphic-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/PastedGraphic-1.png -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/README.md -------------------------------------------------------------------------------- /Show_Calibration.php: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/Show_Calibration.php -------------------------------------------------------------------------------- /about.php: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/about.php -------------------------------------------------------------------------------- /autocomplete_all_names.php: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/autocomplete_all_names.php -------------------------------------------------------------------------------- /autocomplete_publications.php: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/autocomplete_publications.php -------------------------------------------------------------------------------- /autocomplete_species.php: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/autocomplete_species.php -------------------------------------------------------------------------------- /config.php.EXAMPLE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/config.php.EXAMPLE -------------------------------------------------------------------------------- /css/fcd-theme/images/ui-bg_diagonals-small_80_ffffff_40x40.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/css/fcd-theme/images/ui-bg_diagonals-small_80_ffffff_40x40.png -------------------------------------------------------------------------------- /css/fcd-theme/images/ui-bg_flat_25_ffffff_40x100.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/css/fcd-theme/images/ui-bg_flat_25_ffffff_40x100.png -------------------------------------------------------------------------------- /css/fcd-theme/images/ui-bg_flat_30_cccccc_40x100.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/css/fcd-theme/images/ui-bg_flat_30_cccccc_40x100.png -------------------------------------------------------------------------------- /css/fcd-theme/images/ui-bg_glass_40_ffc73d_1x400.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/css/fcd-theme/images/ui-bg_glass_40_ffc73d_1x400.png -------------------------------------------------------------------------------- /css/fcd-theme/images/ui-bg_highlight-hard_20_0972a5_1x100.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/css/fcd-theme/images/ui-bg_highlight-hard_20_0972a5_1x100.png -------------------------------------------------------------------------------- /css/fcd-theme/images/ui-bg_highlight-soft_33_003147_1x100.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/css/fcd-theme/images/ui-bg_highlight-soft_33_003147_1x100.png -------------------------------------------------------------------------------- /css/fcd-theme/images/ui-bg_highlight-soft_35_222222_1x100.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/css/fcd-theme/images/ui-bg_highlight-soft_35_222222_1x100.png -------------------------------------------------------------------------------- /css/fcd-theme/images/ui-bg_highlight-soft_44_444444_1x100.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/css/fcd-theme/images/ui-bg_highlight-soft_44_444444_1x100.png -------------------------------------------------------------------------------- /css/fcd-theme/images/ui-bg_highlight-soft_80_eeeeee_1x100.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/css/fcd-theme/images/ui-bg_highlight-soft_80_eeeeee_1x100.png -------------------------------------------------------------------------------- /css/fcd-theme/images/ui-icons_222222_256x240.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/css/fcd-theme/images/ui-icons_222222_256x240.png -------------------------------------------------------------------------------- /css/fcd-theme/images/ui-icons_223363_256x240.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/css/fcd-theme/images/ui-icons_223363_256x240.png -------------------------------------------------------------------------------- /css/fcd-theme/images/ui-icons_555555_256x240.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/css/fcd-theme/images/ui-icons_555555_256x240.png -------------------------------------------------------------------------------- /css/fcd-theme/images/ui-icons_a83300_256x240.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/css/fcd-theme/images/ui-icons_a83300_256x240.png -------------------------------------------------------------------------------- /css/fcd-theme/images/ui-icons_cccccc_256x240.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/css/fcd-theme/images/ui-icons_cccccc_256x240.png -------------------------------------------------------------------------------- /css/fcd-theme/images/ui-icons_ffffff_256x240.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/css/fcd-theme/images/ui-icons_ffffff_256x240.png -------------------------------------------------------------------------------- /css/fcd-theme/jquery-ui-1.9.2.custom.css: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/css/fcd-theme/jquery-ui-1.9.2.custom.css -------------------------------------------------------------------------------- /css/fcd-theme/jquery-ui-1.9.2.custom.min.css: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/css/fcd-theme/jquery-ui-1.9.2.custom.min.css -------------------------------------------------------------------------------- /css/site-4.css: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/css/site-4.css -------------------------------------------------------------------------------- /css/site-4a.css: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/css/site-4a.css -------------------------------------------------------------------------------- /css/site.css: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/css/site.css -------------------------------------------------------------------------------- /css/tagit-awesome-blue.css: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/css/tagit-awesome-blue.css -------------------------------------------------------------------------------- /css/tagit-awesome-orange.css: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/css/tagit-awesome-orange.css -------------------------------------------------------------------------------- /css/tagit-dark-grey.css: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/css/tagit-dark-grey.css -------------------------------------------------------------------------------- /css/tagit-simple-blue.css: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/css/tagit-simple-blue.css -------------------------------------------------------------------------------- /css/tagit-simple-green.css: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/css/tagit-simple-green.css -------------------------------------------------------------------------------- /css/tagit-simple-grey.css: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/css/tagit-simple-grey.css -------------------------------------------------------------------------------- /css/tagit-stylish-yellow.css: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/css/tagit-stylish-yellow.css -------------------------------------------------------------------------------- /css/ui-anim_basic_16x16.gif: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/css/ui-anim_basic_16x16.gif -------------------------------------------------------------------------------- /db/FossilCalibration.sql: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/db/FossilCalibration.sql -------------------------------------------------------------------------------- /db/ReadMe.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/db/ReadMe.txt -------------------------------------------------------------------------------- /db/database-migration-001.sql: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/db/database-migration-001.sql -------------------------------------------------------------------------------- /db/database-migration-002.sql: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/db/database-migration-002.sql -------------------------------------------------------------------------------- /db/database-migration-003.sql: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/db/database-migration-003.sql -------------------------------------------------------------------------------- /db/database-migration-004.sql: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/db/database-migration-004.sql -------------------------------------------------------------------------------- /db/database-migration-005.sql: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/db/database-migration-005.sql -------------------------------------------------------------------------------- /db/database-migration-006.sql: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/db/database-migration-006.sql -------------------------------------------------------------------------------- /db/database-migration-007.sql: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/db/database-migration-007.sql -------------------------------------------------------------------------------- /db/database-migration-008.sql: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/db/database-migration-008.sql -------------------------------------------------------------------------------- /db/database-migration-009.sql: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/db/database-migration-009.sql -------------------------------------------------------------------------------- /db/database-migration-010.sql: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/db/database-migration-010.sql -------------------------------------------------------------------------------- /db/database-migration-011.sql: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/db/database-migration-011.sql -------------------------------------------------------------------------------- /db/database-migration-012.sql: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/db/database-migration-012.sql -------------------------------------------------------------------------------- /db/gathering-landmark-NCBI-ids.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/db/gathering-landmark-NCBI-ids.txt -------------------------------------------------------------------------------- /db/multitree-procedures.sql: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/db/multitree-procedures.sql -------------------------------------------------------------------------------- /db/stored-procedures.sql: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/db/stored-procedures.sql -------------------------------------------------------------------------------- /db/submission-test.sql: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/db/submission-test.sql -------------------------------------------------------------------------------- /do_login.php: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/do_login.php -------------------------------------------------------------------------------- /faq.php: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/faq.php -------------------------------------------------------------------------------- /favicon.ico: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/favicon.ico -------------------------------------------------------------------------------- /fetch-search-results.php: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/fetch-search-results.php -------------------------------------------------------------------------------- /fetch_taxon_properties.php: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/fetch_taxon_properties.php -------------------------------------------------------------------------------- /footer.php: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/footer.php -------------------------------------------------------------------------------- /header.php: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/header.php -------------------------------------------------------------------------------- /help.php: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/help.php -------------------------------------------------------------------------------- /images/add-filter.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/images/add-filter.png -------------------------------------------------------------------------------- /images/archosauria.jpeg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/images/archosauria.jpeg -------------------------------------------------------------------------------- /images/blocked-filter.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/images/blocked-filter.png -------------------------------------------------------------------------------- /images/flag-icon.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/images/flag-icon.png -------------------------------------------------------------------------------- /images/flag-icon.xcf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/images/flag-icon.xcf -------------------------------------------------------------------------------- /images/header-logo-bw.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/images/header-logo-bw.png -------------------------------------------------------------------------------- /images/header-logo-dark.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/images/header-logo-dark.png -------------------------------------------------------------------------------- /images/header-logo-light.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/images/header-logo-light.png -------------------------------------------------------------------------------- /images/insecta.jpeg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/images/insecta.jpeg -------------------------------------------------------------------------------- /images/meeting-0.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/images/meeting-0.jpg -------------------------------------------------------------------------------- /images/meeting-1.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/images/meeting-1.jpg -------------------------------------------------------------------------------- /images/meeting-2.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/images/meeting-2.jpg -------------------------------------------------------------------------------- /images/meeting-3.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/images/meeting-3.jpg -------------------------------------------------------------------------------- /images/meeting-4-ORIG.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/images/meeting-4-ORIG.jpg -------------------------------------------------------------------------------- /images/meeting-4.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/images/meeting-4.jpg -------------------------------------------------------------------------------- /images/meeting-4a.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/images/meeting-4a.jpg -------------------------------------------------------------------------------- /images/remove-filter.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/images/remove-filter.png -------------------------------------------------------------------------------- /images/result-ancestor1.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/images/result-ancestor1.jpg -------------------------------------------------------------------------------- /images/result-ancestor2.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/images/result-ancestor2.jpg -------------------------------------------------------------------------------- /images/result-member.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/images/result-member.jpg -------------------------------------------------------------------------------- /images/result-mrca.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/images/result-mrca.jpg -------------------------------------------------------------------------------- /images/result-neutral.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/images/result-neutral.jpg -------------------------------------------------------------------------------- /images/result-tip.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/images/result-tip.jpg -------------------------------------------------------------------------------- /images/search-button.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/images/search-button.png -------------------------------------------------------------------------------- /images/status-black.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/images/status-black.png -------------------------------------------------------------------------------- /images/status-green.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/images/status-green.png -------------------------------------------------------------------------------- /images/status-red.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/images/status-red.png -------------------------------------------------------------------------------- /images/status-yellow.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/images/status-yellow.png -------------------------------------------------------------------------------- /index.php: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/index.php -------------------------------------------------------------------------------- /jquery-ui-test.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/jquery-ui-test.html -------------------------------------------------------------------------------- /js/jquery-1.8.3.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/js/jquery-1.8.3.js -------------------------------------------------------------------------------- /js/jquery-ui-1.9.2.custom.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/js/jquery-ui-1.9.2.custom.js -------------------------------------------------------------------------------- /js/jquery-ui-1.9.2.custom.min.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/js/jquery-ui-1.9.2.custom.min.js -------------------------------------------------------------------------------- /js/jquery.complete-placeholder.min.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/js/jquery.complete-placeholder.min.js -------------------------------------------------------------------------------- /js/tagit.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/js/tagit.js -------------------------------------------------------------------------------- /login.php: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/login.php -------------------------------------------------------------------------------- /logout.php: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/logout.php -------------------------------------------------------------------------------- /ncbi-update/README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/ncbi-update/README.md -------------------------------------------------------------------------------- /ncbi-update/compare-after-NCBI-update.sql: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/ncbi-update/compare-after-NCBI-update.sql -------------------------------------------------------------------------------- /ncbi-update/refreshCalibrationsByClade.sql: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/ncbi-update/refreshCalibrationsByClade.sql -------------------------------------------------------------------------------- /ncbi-update/stash-before-NCBI-update.sql: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/ncbi-update/stash-before-NCBI-update.sql -------------------------------------------------------------------------------- /ncbi-update/stashPinnedLineages.sql: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/ncbi-update/stashPinnedLineages.sql -------------------------------------------------------------------------------- /ncbi-update/update-NCBI-from-dump.sql: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/ncbi-update/update-NCBI-from-dump.sql -------------------------------------------------------------------------------- /protected/.htaccess.EXAMPLE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/protected/.htaccess.EXAMPLE -------------------------------------------------------------------------------- /protected/README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/protected/README.md -------------------------------------------------------------------------------- /protected/REBUILD_ALL_CALIBRATION_TREES.sql: -------------------------------------------------------------------------------- 1 | CALL rebuildAllCalibrationTrees(); 2 | -------------------------------------------------------------------------------- /protected/UPDATE_AUTOCOMPLETE.sql: -------------------------------------------------------------------------------- 1 | CALL refreshAutoCompleteTables('FINAL'); 2 | -------------------------------------------------------------------------------- /protected/UPDATE_CALIBRATIONS_BY_CLADE.sql: -------------------------------------------------------------------------------- 1 | CALL refreshCalibrationsByClade('FINAL'); 2 | -------------------------------------------------------------------------------- /protected/UPDATE_MULTITREE.sql: -------------------------------------------------------------------------------- 1 | CALL refreshMultitree('FINAL'); 2 | -------------------------------------------------------------------------------- /protected/delete_calibration.php: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/protected/delete_calibration.php -------------------------------------------------------------------------------- /protected/delete_collection.php: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/protected/delete_collection.php -------------------------------------------------------------------------------- /protected/delete_fossil.php: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/protected/delete_fossil.php -------------------------------------------------------------------------------- /protected/delete_locality.php: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/protected/delete_locality.php -------------------------------------------------------------------------------- /protected/delete_publication.php: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/protected/delete_publication.php -------------------------------------------------------------------------------- /protected/edit_calibration.php: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/protected/edit_calibration.php -------------------------------------------------------------------------------- /protected/edit_collection.php: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/protected/edit_collection.php -------------------------------------------------------------------------------- /protected/edit_fossil.php: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/protected/edit_fossil.php -------------------------------------------------------------------------------- /protected/edit_locality.php: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/protected/edit_locality.php -------------------------------------------------------------------------------- /protected/edit_publication.php: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/protected/edit_publication.php -------------------------------------------------------------------------------- /protected/edit_site_announcement.php: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/protected/edit_site_announcement.php -------------------------------------------------------------------------------- /protected/fetch_custom_tree_preview.php: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/protected/fetch_custom_tree_preview.php -------------------------------------------------------------------------------- /protected/fetch_matching_hint_node.php: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/protected/fetch_matching_hint_node.php -------------------------------------------------------------------------------- /protected/index.php: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/protected/index.php -------------------------------------------------------------------------------- /protected/manage_calibrations.php: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/protected/manage_calibrations.php -------------------------------------------------------------------------------- /protected/manage_collections.php: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/protected/manage_collections.php -------------------------------------------------------------------------------- /protected/manage_fossils.php: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/protected/manage_fossils.php -------------------------------------------------------------------------------- /protected/manage_localities.php: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/protected/manage_localities.php -------------------------------------------------------------------------------- /protected/manage_publications.php: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/protected/manage_publications.php -------------------------------------------------------------------------------- /protected/remote_operation.php: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/protected/remote_operation.php -------------------------------------------------------------------------------- /protected/remote_operation_FORKING.php: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/protected/remote_operation_FORKING.php -------------------------------------------------------------------------------- /protected/single_fossil_panel.php: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/protected/single_fossil_panel.php -------------------------------------------------------------------------------- /protected/update_calibration.php: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/protected/update_calibration.php -------------------------------------------------------------------------------- /protected/update_collection.php: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/protected/update_collection.php -------------------------------------------------------------------------------- /protected/update_fossil.php: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/protected/update_fossil.php -------------------------------------------------------------------------------- /protected/update_locality.php: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/protected/update_locality.php -------------------------------------------------------------------------------- /protected/update_publication.php: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/protected/update_publication.php -------------------------------------------------------------------------------- /protected/update_site_announcement.php: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/protected/update_site_announcement.php -------------------------------------------------------------------------------- /publication_image.php: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/publication_image.php -------------------------------------------------------------------------------- /search.php: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/search.php -------------------------------------------------------------------------------- /site-announcement.php: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/site-announcement.php -------------------------------------------------------------------------------- /unified-search-2.php: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/unified-search-2.php -------------------------------------------------------------------------------- /unified-search-2a.php: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/unified-search-2a.php -------------------------------------------------------------------------------- /unified-search-3.php: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/unified-search-3.php -------------------------------------------------------------------------------- /unified-search-3a.php: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/unified-search-3a.php -------------------------------------------------------------------------------- /unified-search-4.php: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/unified-search-4.php -------------------------------------------------------------------------------- /unified-search-4a.php: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/unified-search-4a.php -------------------------------------------------------------------------------- /unified-search-5.php: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/unified-search-5.php -------------------------------------------------------------------------------- /unified-search.php: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NESCent/FossilCalibrations/HEAD/unified-search.php --------------------------------------------------------------------------------