├── .gitignore ├── LICENSE ├── README.md ├── configs ├── 4d_cardiac_config.yaml ├── 4d_cardiac_config_test.yaml ├── config_slurm.yaml ├── config_slurm_ftlr-3.yaml ├── config_slurm_incoord.yaml ├── config_slurm_rec_weight.yaml ├── config_slurm_rec_weight_ftlr-5.yaml ├── config_slurm_rec_weight_ftlr-5_lr-5.yaml └── config_slurm_wire_params.yaml ├── data_loading ├── augmentations.py └── data_loader.py ├── images ├── 4CH_segmentation.png ├── Interpolation_diagram.png └── SAX_predictions_z_holdout.png ├── main.py ├── model ├── __init__.py ├── activation_functions.py ├── mlp.py ├── models.py └── pos_encoding.py ├── remove_non_sax_lax_images.py └── utils.py /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NILOIDE/Implicit_segmentation/HEAD/.gitignore -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NILOIDE/Implicit_segmentation/HEAD/LICENSE -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NILOIDE/Implicit_segmentation/HEAD/README.md -------------------------------------------------------------------------------- /configs/4d_cardiac_config.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NILOIDE/Implicit_segmentation/HEAD/configs/4d_cardiac_config.yaml -------------------------------------------------------------------------------- /configs/4d_cardiac_config_test.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NILOIDE/Implicit_segmentation/HEAD/configs/4d_cardiac_config_test.yaml -------------------------------------------------------------------------------- /configs/config_slurm.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NILOIDE/Implicit_segmentation/HEAD/configs/config_slurm.yaml -------------------------------------------------------------------------------- /configs/config_slurm_ftlr-3.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NILOIDE/Implicit_segmentation/HEAD/configs/config_slurm_ftlr-3.yaml -------------------------------------------------------------------------------- /configs/config_slurm_incoord.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NILOIDE/Implicit_segmentation/HEAD/configs/config_slurm_incoord.yaml -------------------------------------------------------------------------------- /configs/config_slurm_rec_weight.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NILOIDE/Implicit_segmentation/HEAD/configs/config_slurm_rec_weight.yaml -------------------------------------------------------------------------------- /configs/config_slurm_rec_weight_ftlr-5.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NILOIDE/Implicit_segmentation/HEAD/configs/config_slurm_rec_weight_ftlr-5.yaml -------------------------------------------------------------------------------- /configs/config_slurm_rec_weight_ftlr-5_lr-5.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NILOIDE/Implicit_segmentation/HEAD/configs/config_slurm_rec_weight_ftlr-5_lr-5.yaml -------------------------------------------------------------------------------- /configs/config_slurm_wire_params.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NILOIDE/Implicit_segmentation/HEAD/configs/config_slurm_wire_params.yaml -------------------------------------------------------------------------------- /data_loading/augmentations.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NILOIDE/Implicit_segmentation/HEAD/data_loading/augmentations.py -------------------------------------------------------------------------------- /data_loading/data_loader.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NILOIDE/Implicit_segmentation/HEAD/data_loading/data_loader.py -------------------------------------------------------------------------------- /images/4CH_segmentation.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NILOIDE/Implicit_segmentation/HEAD/images/4CH_segmentation.png -------------------------------------------------------------------------------- /images/Interpolation_diagram.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NILOIDE/Implicit_segmentation/HEAD/images/Interpolation_diagram.png -------------------------------------------------------------------------------- /images/SAX_predictions_z_holdout.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NILOIDE/Implicit_segmentation/HEAD/images/SAX_predictions_z_holdout.png -------------------------------------------------------------------------------- /main.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NILOIDE/Implicit_segmentation/HEAD/main.py -------------------------------------------------------------------------------- /model/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /model/activation_functions.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NILOIDE/Implicit_segmentation/HEAD/model/activation_functions.py -------------------------------------------------------------------------------- /model/mlp.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NILOIDE/Implicit_segmentation/HEAD/model/mlp.py -------------------------------------------------------------------------------- /model/models.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NILOIDE/Implicit_segmentation/HEAD/model/models.py -------------------------------------------------------------------------------- /model/pos_encoding.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NILOIDE/Implicit_segmentation/HEAD/model/pos_encoding.py -------------------------------------------------------------------------------- /remove_non_sax_lax_images.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NILOIDE/Implicit_segmentation/HEAD/remove_non_sax_lax_images.py -------------------------------------------------------------------------------- /utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NILOIDE/Implicit_segmentation/HEAD/utils.py --------------------------------------------------------------------------------