├── AD_progression.png ├── AD_progression_new.png ├── Data ├── ADNI_test_volumes.tsv ├── ADNI_train_volumes.tsv ├── ADNI_val_volumes.tsv └── NACC_volumes.tsv ├── LICENSE ├── Model_eval.ipynb ├── README.md ├── all_resized.gif ├── config.yaml ├── data_examples ├── AD_example.png ├── CN_example.png ├── MCI_example.png ├── visualization_01.png ├── visualization_02.png └── visualization_03.png ├── datasets ├── __init__.py ├── __pycache__ │ ├── __init__.cpython-36.pyc │ ├── adni_3d.cpython-36.pyc │ └── augmentations.cpython-36.pyc ├── adni_3d.py ├── augmentations.py └── files │ ├── Test_ADNI.tsv │ ├── Test_diagnosis_ADNI.tsv │ ├── Train_ADNI.tsv │ ├── Train_diagnosis_ADNI.tsv │ ├── Train_diagnosis_ADNI_toy.tsv │ ├── Val_ADNI.tsv │ ├── Val_diagnosis_ADNI.tsv │ ├── run_adni_preprocess.sh │ ├── run_adni_preprocess_test.sh │ ├── run_adni_preprocess_val.sh │ └── run_convert.sh ├── lib ├── Loss.py ├── __init__.py ├── alias_multinomial.py ├── custom_transforms.py ├── normalize.py └── utils.py ├── main.py ├── models ├── LinearModel.py ├── build_model.py ├── classifier.py └── models.py └── overview.png /AD_progression.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NYUMedML/CNN_design_for_AD/HEAD/AD_progression.png -------------------------------------------------------------------------------- /AD_progression_new.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NYUMedML/CNN_design_for_AD/HEAD/AD_progression_new.png -------------------------------------------------------------------------------- /Data/ADNI_test_volumes.tsv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/NYUMedML/CNN_design_for_AD/HEAD/Data/ADNI_test_volumes.tsv -------------------------------------------------------------------------------- /Data/ADNI_train_volumes.tsv: 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