├── .github └── workflows │ └── main.yml ├── .gitignore ├── .jvmopts ├── 3D ├── Code Examples │ ├── Airplane Landing Example 3D.nlogox3d │ ├── Airplane Landing Example 3D.png │ ├── Bouncing Balls Example 3D.nlogox3d │ ├── Bouncing Balls Example 3D.png │ ├── Hill Climbing Example 3D.nlogox3d │ ├── Hill Climbing Example 3D.png │ ├── Neighborhoods Example 3D.nlogox3d │ ├── Neighborhoods Example 3D.png │ ├── Network Example 3D.nlogox3d │ ├── Network Example 3D.png │ ├── Shapes Example 3D.nlogox3d │ ├── Shapes Example 3D.png │ ├── Spherical Path Example 3D.nlogox3d │ ├── Spherical Path Example 3D.png │ ├── Three Loops Example 3D.nlogox3d │ ├── Three Loops Example 3D.png │ ├── Trails Example 3D.nlogox3d │ ├── Trails Example 3D.png │ ├── Turtle Dance Example 3D.nlogox3d │ ├── Turtle Dance Example 3D.png │ ├── Turtle Perspective Example 3D.nlogox3d │ ├── Turtle Perspective Example 3D.png │ ├── Turtle and Observer Motion Example 3D.nlogox3d │ ├── Turtle and Observer Motion Example 3D.png │ ├── Uniform Distribution on a Sphere Example 3D.nlogox3d │ └── Uniform Distribution on a Sphere Example 3D.png └── Sample Models │ ├── DLA 3D.nlogox3d │ ├── DLA 3D.png │ ├── Fireworks 3D.nlogox3d │ ├── Fireworks 3D.png │ ├── Flocking 3D Alternate.nlogox3d │ ├── Flocking 3D Alternate.png │ ├── Flocking 3D.nlogox3d │ ├── Flocking 3D.png │ ├── Follower 3D.nlogox3d │ ├── Follower 3D.png │ ├── GasLab │ ├── GasLab Free Gas 3D.nlogox3d │ ├── GasLab Free Gas 3D.png │ ├── GasLab Single Collision 3D.nlogox3d │ ├── GasLab Single Collision 3D.png │ ├── GasLab Two Gas 3D.nlogox3d │ ├── GasLab Two Gas 3D.png │ └── wall.txt │ ├── Hydrogen Diffusion 3D.nlogox3d │ ├── Hydrogen Diffusion 3D.png │ ├── Life 3D.nlogox3d │ ├── Life 3D.png │ ├── Maze 3D.nlogox3d │ ├── Mousetraps 3D.nlogox3d │ ├── Mousetraps 3D.png │ ├── Percolation 3D.nlogox3d │ ├── Percolation 3D.png │ ├── Preferential Attachment 3D.nlogox3d │ ├── Preferential Attachment 3D.png │ ├── Raindrops 3D.nlogox3d │ ├── Raindrops 3D.png │ ├── Rope 3D.nlogox3d │ ├── Rope 3D.png │ ├── Sand 3D.nlogox3d │ ├── Sand 3D.png │ ├── Sandpile 3D.nlogox3d │ ├── Sandpile 3D.png │ ├── Sierpinski Simple 3D.nlogox3d │ ├── Sierpinski Simple 3D.png │ ├── Sunflower 3D.nlogox3d │ ├── Sunflower 3D.png │ ├── Surface Walking 3D.nlogox3d │ ├── Surface Walking 3D.png │ ├── Termites 3D.nlogox3d │ ├── Termites 3D.png │ ├── Tree Simple 3D.nlogox3d │ ├── Tree Simple 3D.png │ ├── Wave Machine 3D.nlogox3d │ └── Wave Machine 3D.png ├── Alternative Visualizations ├── Ethnocentrism - Alternative Visualization.nlogox ├── Flocking - Alternative Visualizations.nlogox ├── Heat Diffusion - Alternative Visualization.nlogox ├── Virus - Alternative Visualization.nlogox └── Virus - Circle Visualization.nlogox ├── Code Examples ├── 3D Shapes Example.nlogox ├── 3D Shapes Example.png ├── Ask Ordering Example.nlogox ├── Ask-Concurrent Example.nlogox ├── Bounce Example.nlogox ├── Box Drawing Example.nlogox ├── Breed Procedures Example.nlogox ├── Breeds and Shapes Example.nlogox ├── Case Conversion Example.nlogox ├── Case Conversion Example.png ├── Circular Path Example.nlogox ├── Color Chart Example.nlogox ├── Communication-T-P Example.nlogox ├── Communication-T-T Example.nlogox ├── Diffuse Off Edges Example.nlogox ├── Extensions Examples │ ├── csv │ │ └── CSV Example.nlogox │ ├── gis │ │ ├── GIS General Examples.nlogox │ │ ├── GIS Gradient Example.nlogox │ │ ├── GIS Gradient Example.png │ │ └── data │ │ │ ├── Lambert_Conformal_Conic.prj │ │ │ ├── US_Orthographic.prj │ │ │ ├── WGS_84_Geographic.prj │ │ │ ├── cities.dbf │ │ │ ├── cities.prj │ │ │ ├── cities.shp │ │ │ ├── cities.shx │ │ │ ├── cities.txt │ │ │ ├── countries.dbf │ │ │ ├── countries.prj │ │ │ ├── countries.shp │ │ │ ├── countries.shx │ │ │ ├── countries.xml │ │ │ ├── local-elevation.asc │ │ │ ├── local-elevation.prj │ │ │ ├── rivers.dbf │ │ │ ├── rivers.prj │ │ │ ├── rivers.shp │ │ │ ├── rivers.shx │ │ │ ├── rivers.txt │ │ │ ├── world-elevation.asc │ │ │ └── world-elevation.prj │ ├── gogo │ │ ├── GoGoMonitor.nlogox │ │ ├── GoGoMonitor.png │ │ ├── GoGoMonitorSimple.nlogox │ │ └── GoGoMonitorSimple.png │ ├── ls │ │ ├── Model Interactions Example.nlogox │ │ ├── Model Interactions Example.png │ │ ├── Model Visualizer and Plotter Example.nlogox │ │ ├── Model Visualizer and Plotter Example.png │ │ ├── Parent Model Example.nlogox │ │ └── Parent Model Example.png │ ├── matrix │ │ ├── Matrix Example.nlogox │ │ └── Matrix Example.png │ ├── nw │ │ ├── NW General Examples.nlogox │ │ └── NW General Examples.png │ ├── palette │ │ ├── Color Bubbles.nlogox │ │ ├── Color Painting.nlogox │ │ ├── Color Reveal.nlogox │ │ └── Palette Example.nlogox │ ├── profiler │ │ ├── Profiler Example.nlogox │ │ └── Profiler Example.png │ ├── py │ │ ├── Python Basic Example.nlogox │ │ ├── Python Basic Example.png │ │ └── Python Flocking Clusters.nlogox │ ├── rnd │ │ └── Rnd Example.nlogox │ ├── sound │ │ ├── Beatbox.nlogox │ │ ├── Beatbox.png │ │ ├── Beats │ │ │ ├── rock1.csv │ │ │ ├── seth1.csv │ │ │ ├── seth2.csv │ │ │ └── seth3.csv │ │ ├── Composer.nlogox │ │ ├── Composer.png │ │ ├── GasLab With Sound.nlogox │ │ ├── GasLab With Sound.png │ │ ├── Musical Phrase Example.nlogox │ │ ├── Musical Phrase Example.png │ │ ├── Percussion Workbench.nlogox │ │ ├── Percussion Workbench.png │ │ ├── Sound Workbench.nlogox │ │ └── Sound Workbench.png │ ├── sr │ │ ├── Boxplot Example.nlogox │ │ ├── DataFile Example.nlogox │ │ ├── Diversity Example.nlogox │ │ ├── Example 1.nlogox │ │ ├── Interactive Shell.nlogox │ │ ├── Linear Regression Example.nlogox │ │ ├── Package Example.nlogox │ │ ├── Patches to R Matrix.nlogox │ │ ├── Plot Example 1.nlogox │ │ ├── Plot to File Example.nlogox │ │ ├── RScript Example.nlogox │ │ ├── Ripleys-K Example.nlogox │ │ ├── Spearman Example.nlogox │ │ ├── Wilcoxon Example.nlogox │ │ ├── plotting.nlogox │ │ └── rfunction1.r │ ├── table │ │ ├── Table Example.nlogox │ │ └── Table Example.png │ ├── time │ │ ├── Discrete Event Mousetrap.nlogox │ │ ├── Discrete Event Mousetrap.png │ │ ├── Discrete Event Whack-a-Mole.nlogox │ │ ├── Logotimes Example.nlogox │ │ └── time-series.nls │ ├── vid │ │ ├── Movie Playing Example.nlogox │ │ ├── Movie Playing Example.png │ │ ├── Movie Recording Example.nlogox │ │ ├── Video Camera Example.nlogox │ │ └── Video Camera Example.png │ └── view2.5d │ │ ├── 2.5d Patch View Example.nlogox │ │ ├── 2.5d Patch View Example.png │ │ ├── 2.5d Turtle View Example.nlogox │ │ └── 2.5d Turtle View Example.png ├── File IO Patch Data.txt ├── File Input Example.nlogox ├── File Input Example.png ├── File Output Example.nlogox ├── Fully Connected Network Example.nlogox ├── Grouping Turtles Example.nlogox ├── HSB and RGB Example.nlogox ├── Halo Example.nlogox ├── Hatch Example.nlogox ├── Hex Cells Example.nlogox ├── Hex Turtles Example.nlogox ├── Hill Climbing Example.nlogox ├── Histogram Example.nlogox ├── Image Import Example.nlogox ├── Image Resource Example.nlogox ├── Image Resource Example.png ├── Info Tab Example.nlogox ├── Info Tab Example.png ├── Intersecting Lines Example.nlogox ├── Intersecting Links Example.nlogox ├── Label Position Example.nlogox ├── Lattice-Walking Turtles Example.nlogox ├── Line of Sight Example.nlogox ├── Link Breeds Example.nlogox ├── Link Lattice Example.nlogox ├── Link-Walking Turtles Example.nlogox ├── Look Ahead Example.nlogox ├── Lottery Example.nlogox ├── Many Regions Example.nlogox ├── Mobile Aggregation Example.nlogox ├── Moore & Von Neumann Example.nlogox ├── Mouse Drag Multiple Example.nlogox ├── Mouse Drag One Example.nlogox ├── Mouse Example.nlogox ├── Mouse Example.png ├── Mouse Recording Example.nlogox ├── Mouse Recording Example.png ├── Move Towards Target Example.nlogox ├── Myself Example.nlogox ├── Neighborhoods Example.nlogox ├── Network Example.nlogox ├── Network Import Example.nlogox ├── Next Patch Example.nlogox ├── One Turtle Per Patch Example.nlogox ├── Ordered Agent Drawing Example.nlogox ├── Partners Example.nlogox ├── Patch Clusters Example.nlogox ├── Patch Coordinates Example.nlogox ├── Patch Outlines Example.nlogox ├── Perspective Demos │ ├── Ants (Perspective Demo).nlogox │ ├── Ants (Perspective Demo).png │ ├── Flocking (Perspective Demo).nlogox │ ├── Flocking (Perspective Demo).png │ ├── GasLab Gas in a Box (Perspective Demo).nlogox │ ├── Termites (Perspective Demo).nlogox │ └── Termites (Perspective Demo).png ├── Perspective Example.nlogox ├── Perspective Example.png ├── Plot Axis Example.nlogox ├── Plot Axis Example.png ├── Plot Smoothing Example.nlogox ├── Plot Smoothing Example.png ├── Plotting Example.nlogox ├── Plotting Example.png ├── Random Grid Walk Example.nlogox ├── Random Network Example.nlogox ├── Random Seed Example.nlogox ├── Random Walk Example.nlogox ├── Rolling Plot Example.nlogox ├── Rolling Plot Example.png ├── Scale-color Example.nlogox ├── Scatter Example.nlogox ├── Shape Animation Example.nlogox ├── State Machine Example.nlogox ├── Tie System Example.nlogox ├── Transparency Example.nlogox ├── Tutorial 3.nlogox ├── User Interaction Example.nlogox ├── User Interaction Example.png ├── Vision Cone Example.nlogox ├── Wall Following Example.nlogox ├── aquifer-egypt.jpg ├── attributes.txt ├── dandelions.gif ├── earth.gif ├── ecoli.jpg ├── links.txt └── weathermap.jpg ├── Curricular Models ├── BEAGLE Evolution │ ├── Bird Breeder.nlogox │ ├── Bug Hunt Coevolution.nlogox │ ├── Bug Hunt Consumers.nlogox │ ├── Bug Hunt Drift.nlogox │ ├── Bug Hunt Predators and Invasive Species.nlogox │ ├── DNA Protein Synthesis.nlogox │ ├── DNA Replication Fork.nlogox │ ├── EACH │ │ ├── Altruism.nlogox │ │ ├── Cooperation.nlogox │ │ └── Divide The Cake.nlogox │ ├── Fish Tank Genetic Drift.nlogox │ ├── HubNet Activities │ │ ├── Bird Breeders HubNet.nlogox │ │ ├── Bird Breeders HubNet.png │ │ ├── Bug Hunters Adaptations HubNet.nlogox │ │ ├── Bug Hunters Adaptations HubNet.png │ │ ├── Bug Hunters Camouflage HubNet.nlogox │ │ ├── Bug Hunters Camouflage HubNet.png │ │ ├── Bug Hunters Competition HubNet.nlogox │ │ ├── Bug Hunters Competition HubNet.png │ │ ├── Critter Designers HubNet.nlogox │ │ ├── Critter Designers HubNet.png │ │ ├── Fish Spotters HubNet.nlogox │ │ ├── Fish Spotters HubNet.png │ │ ├── Guppy Spots HubNet.nlogox │ │ ├── Guppy Spots HubNet.png │ │ ├── aquarium.jpg │ │ ├── glacier.jpg │ │ ├── poppyfield.jpg │ │ ├── seashore.jpg │ │ └── underwater.jpg │ ├── Plant Hybridization.nlogox │ ├── Plant Speciation.nlogox │ └── Red Queen.nlogox ├── CT-STEM │ ├── 1D Motion Maps.nlogox │ ├── Calorimetry.nlogox │ ├── Calorimetry.png │ ├── Free Fall.nlogox │ ├── Habitat Preference Behavior.nlogox │ ├── Hardy Weinberg Equilibrium.nlogox │ ├── Kidney Reabsorption.nlogox │ ├── Mendelian Inheritance.nlogox │ ├── Natural Selection - Camouflage.nlogox │ ├── Pendulum.nlogox │ └── Volume Temperature.nlogox ├── Connected Chemistry │ ├── Connected Chemistry 1 Bike Tire.nlogox │ ├── Connected Chemistry 2 Changing Pressure.nlogox │ ├── Connected Chemistry 3 Circular Particles.nlogox │ ├── Connected Chemistry 4 Number and Pressure.nlogox │ ├── Connected Chemistry 5 Temperature and Pressure.nlogox │ ├── Connected Chemistry 6 Volume and Pressure.nlogox │ ├── Connected Chemistry 7 Ideal Gas Law.nlogox │ ├── Connected Chemistry 8 Gas Particle Sandbox.nlogox │ ├── Connected Chemistry Atmosphere.nlogox │ ├── Connected Chemistry Gas Combustion.nlogox │ ├── Connected Chemistry Reversible Reaction.nlogox │ ├── Connected Chemistry Rusting Reaction.nlogox │ └── Connected Chemistry Solid Combustion.nlogox ├── GenEvo │ ├── GenEvo 1 Genetic Switch.nlogox │ ├── GenEvo 1 Genetic Switch.png │ ├── GenEvo 2 Genetic Drift.nlogox │ ├── GenEvo 2 Genetic Drift.png │ ├── GenEvo 3 Genetic Drift and Natural Selection.nlogox │ ├── GenEvo 3 Genetic Drift and Natural Selection.png │ ├── GenEvo 4 Competition.nlogox │ ├── GenEvo 4 Competition.png │ ├── Synthetic Biology - Genetic Switch.nlogox │ └── Synthetic Biology - Genetic Switch.png ├── Lattice Land │ ├── Lattice Land - Explore.nlogox │ ├── Lattice Land - Explore.png │ ├── Lattice Land - Triangles Dissection.nlogox │ └── Lattice Land - Triangles Explore.nlogox ├── MaterialSim │ ├── MaterialSim Grain Growth.nlogox │ └── grain-picture.jpg ├── Mind the Gap │ ├── MTG 1 Equal Opportunities HubNet.nlogox │ ├── MTG 1 Equal Opportunities HubNet.png │ ├── MTG 2 Random Assignment HubNet.nlogox │ ├── MTG 2 Random Assignment HubNet.png │ ├── MTG 3 Feedback Loop HubNet.nlogox │ ├── MTG 3 Feedback Loop HubNet.png │ └── sugar-map.txt ├── ModelSim │ ├── Evolution │ │ ├── Bacteria Food Hunt.nlogox │ │ └── Bacteria Hunt Speeds.nlogox │ └── Population Biology │ │ ├── Bug Hunt Disruptions.nlogox │ │ ├── Bug Hunt Environmental Changes.nlogox │ │ └── Bug Hunt Predators and Invasive Species - Two Regions.nlogox ├── NIELS │ ├── Current in a Wire HubNet.nlogox │ ├── Current in a Wire HubNet.png │ ├── Current in a Wire.nlogox │ ├── Current in a Wire.png │ ├── Electron Sink.nlogox │ ├── Electron Sink.png │ ├── Electrostatics.nlogox │ ├── Electrostatics.png │ ├── Parallel Circuit.nlogox │ ├── Parallel Circuit.png │ ├── Series Circuit.nlogox │ └── Series Circuit.png ├── PNoM │ ├── PNoM 1 Diffusion Sandbox.nlogox │ ├── PNoM 2 Diffusion Sensor Sandbox.nlogox │ ├── PNoM 3 Virtual Syringe.nlogox │ ├── PNoM 4 Virtual Syringe Force Graph.nlogox │ ├── PNoM 5 Virtual Syringe Temperature Graph.nlogox │ ├── PNoM 6 Particle Sandbox Gravity.nlogox │ └── PNoM 7 Particle Sandbox Intermolecular Forces.nlogox ├── ProbLab │ ├── 4 Block Stalagmites.nlogox │ ├── 4 Block Two Stalagmites.nlogox │ ├── 4 Blocks.nlogox │ ├── Histo Blocks.nlogox │ └── Sampler Solo.nlogox ├── Urban Suite │ ├── Urban Suite - Awareness.nlogox │ ├── Urban Suite - Cells.nlogox │ ├── Urban Suite - Economic Disparity.nlogox │ ├── Urban Suite - Path Dependence.nlogox │ ├── Urban Suite - Pollution.nlogox │ ├── Urban Suite - Positive Feedback.nlogox │ ├── Urban Suite - Recycling.nlogox │ ├── Urban Suite - Sprawl Effect.nlogox │ ├── Urban Suite - Structure from Randomness 1.nlogox │ ├── Urban Suite - Structure from Randomness 2.nlogox │ └── Urban Suite - Tijuana Bordertowns.nlogox └── epiDEM │ ├── epiDEM Basic.nlogox │ └── epiDEM Travel and Control.nlogox ├── HubNet Activities ├── BeeSmart HubNet.nlogox ├── BeeSmart HubNet.png ├── Bird Breeders HubNet.png ├── Code Examples │ ├── Client Overrides Example HubNet.nlogox │ ├── Client Overrides Example HubNet.png │ ├── Client Perspective Example HubNet.nlogox │ ├── Client Perspective Example HubNet.png │ ├── Template HubNet.nlogox │ └── Template HubNet.png ├── Critter Designers HubNet.png ├── Dice Stalagmite HubNet.nlogox ├── Dice Stalagmite HubNet.png ├── Disease Doctors HubNet.nlogox ├── Disease Doctors HubNet.png ├── Disease HubNet.nlogox ├── Disease HubNet.png ├── Fish Spotters HubNet.png ├── Gridlock HubNet.nlogox ├── Gridlock HubNet.png ├── Memory HubNet.nlogox ├── Memory HubNet.png ├── Minority Game HubNet.nlogox ├── Minority Game HubNet.png ├── Polling HubNet.nlogox ├── Polling HubNet.png ├── Root Beer Game HubNet.nlogox ├── Root Beer Game HubNet.png ├── Sampler HubNet.nlogox ├── Sampler HubNet.png ├── Tragedy of the Commons HubNet.nlogox ├── Tragedy of the Commons HubNet.png └── Unverified │ ├── Function HubNet.nlogox │ ├── Function HubNet.png │ ├── Gridlock Alternate HubNet.nlogox │ ├── Gridlock Alternate HubNet.png │ ├── Investments HubNet.nlogox │ ├── Investments HubNet.png │ ├── Oil Cartel Alternate HubNet.nlogox │ ├── Oil Cartel Alternate HubNet.png │ ├── PANDA BEAR HubNet.nlogox │ ├── PANDA BEAR HubNet.png │ ├── Polling Advanced HubNet.nlogox │ ├── Polling Advanced HubNet.png │ ├── Predator Prey Game HubNet.nlogox │ ├── Predator Prey Game HubNet.png │ ├── Prisoners Dilemma HubNet.nlogox │ ├── Prisoners Dilemma HubNet.png │ ├── Public Good HubNet.nlogox │ ├── Public Good HubNet.png │ ├── Restaurants HubNet.nlogox │ ├── Restaurants HubNet.png │ ├── Walking HubNet.nlogox │ └── Walking HubNet.png ├── IABM Textbook ├── chapter 0 │ └── Turtles Circling Simple.nlogox ├── chapter 1 │ └── Ants Simple.nlogox ├── chapter 2 │ ├── Heroes and Cowards.nlogox │ ├── Life Simple.nlogox │ └── Simple Economy.nlogox ├── chapter 3 │ ├── DLA Extensions │ │ ├── DLA Simple Extension 1.nlogox │ │ ├── DLA Simple Extension 2.nlogox │ │ ├── DLA Simple Extension 3.nlogox │ │ └── DLA Simple.nlogox │ ├── El Farol Extensions │ │ ├── El Farol Extension 1.nlogox │ │ ├── El Farol Extension 2.nlogox │ │ ├── El Farol Extension 3.nlogox │ │ └── El Farol.nlogox │ ├── Fire Extensions │ │ ├── Fire Simple Extension 1.nlogox │ │ ├── Fire Simple Extension 2.nlogox │ │ ├── Fire Simple Extension 3.nlogox │ │ └── Fire Simple.nlogox │ └── Segregation Extensions │ │ ├── Segregation Simple Extension 1.nlogox │ │ ├── Segregation Simple Extension 2.nlogox │ │ ├── Segregation Simple Extension 3.nlogox │ │ └── Segregation Simple.nlogox ├── chapter 4 │ ├── Wolf Sheep Simple 1.nlogox │ ├── Wolf Sheep Simple 2.nlogox │ ├── Wolf Sheep Simple 3.nlogox │ ├── Wolf Sheep Simple 4.nlogox │ └── Wolf Sheep Simple 5.nlogox ├── chapter 5 │ ├── Agentset Efficiency.nlogox │ ├── Agentset Ordering.nlogox │ ├── Communication-T-T Network Example.nlogox │ ├── Preferential Attachment Simple.nlogox │ ├── Random Network.nlogox │ ├── Traffic Basic Adaptive Individuals.nlogox │ ├── Traffic Basic Adaptive.nlogox │ ├── Traffic Basic Utility.nlogox │ └── Traffic Grid Goal.nlogox ├── chapter 6 │ └── Spread of Disease.nlogox ├── chapter 7 │ ├── Voting Component Verification.nlogox │ └── Voting Sensitivity Analysis.nlogox └── chapter 8 │ ├── Arduino Example.nlogox │ ├── Arduino Example.png │ ├── Disease With Android Avoidance HubNet.nlogox │ ├── Disease With Android Avoidance HubNet.png │ ├── Example HubNet.nlogox │ ├── Example HubNet.png │ ├── Run Example.nlogox │ ├── Run Result Example.nlogox │ ├── Sandpile Simple.nlogox │ ├── Simple Machine Learning.nlogox │ ├── Simple Viral Marketing.nlogox │ ├── Ticket Sales.nlogox │ ├── arduino-example-sketch │ └── arduino-example-sketch.ino │ └── data │ ├── households.txt │ ├── roads.dbf │ ├── roads.shp │ ├── tracts.dbf │ └── tracts.shp ├── README.md ├── Sample Models ├── Art │ ├── Diffusion Graphics.nlogox │ ├── Fireworks.nlogox │ ├── Follower.nlogox │ ├── GenJam - Duple.nlogox │ ├── GenJam - Duple.png │ ├── Geometron Top-Down.nlogox │ ├── Kaleidoscope.nlogox │ ├── Optical Illusions.nlogox │ ├── Sound Machines.nlogox │ └── Sound Machines.png ├── Biology │ ├── Ant Lines.nlogox │ ├── Ants.nlogox │ ├── Autumn.nlogox │ ├── BeeSmart Hive Finding.nlogox │ ├── Blood Sugar Regulation.nlogox │ ├── CRISPR │ │ ├── CRISPR Bacterium LevelSpace.nlogox │ │ ├── CRISPR Bacterium.nlogox │ │ ├── CRISPR Ecosystem LevelSpace.nlogox │ │ ├── CRISPR Ecosystem.nlogox │ │ └── crispr-locus.png │ ├── Chloroplasts and Food.nlogox │ ├── Daisyworld.nlogox │ ├── Disease Solo.nlogox │ ├── Evolution │ │ ├── Americas.png │ │ ├── Anisogamy.nlogox │ │ ├── Bacterial Infection.nlogox │ │ ├── Baldwin Effect.nlogox │ │ ├── Bug Hunt Camouflage.nlogox │ │ ├── Bug Hunt Speeds.nlogox │ │ ├── Echo.nlogox │ │ ├── Genetic Drift │ │ │ ├── GenDrift P global.nlogox │ │ │ ├── GenDrift P local.nlogox │ │ │ ├── GenDrift T interact.nlogox │ │ │ └── GenDrift T reproduce.nlogox │ │ ├── Mammoths.nlogox │ │ ├── Mammoths.png │ │ ├── Mimicry.nlogox │ │ ├── Peppered Moths.nlogox │ │ ├── Sex Ratio Equilibrium.nlogox │ │ ├── Sunflower Biomorphs.nlogox │ │ ├── Vision Evolution.nlogox │ │ ├── Wolf Sheep Stride Inheritance.nlogox │ │ ├── glacier.jpg │ │ ├── poppyfield.jpg │ │ └── seashore.jpg │ ├── Fairy Circles.nlogox │ ├── Fireflies.nlogox │ ├── Flocking Vee Formations.nlogox │ ├── Flocking.nlogox │ ├── Food Reward Learning.nlogox │ ├── Fur.nlogox │ ├── HIV.nlogox │ ├── Heatbugs.nlogox │ ├── Honeycomb.nlogox │ ├── Invasive Plants.nlogox │ ├── Membrane Formation.nlogox │ ├── Moths.nlogox │ ├── Muscle Development.nlogox │ ├── Rabbits Grass Weeds.nlogox │ ├── Repressilator 1D.nlogox │ ├── Rock Paper Scissors.nlogox │ ├── Shepherds.nlogox │ ├── Simple Birth Rates.nlogox │ ├── Slime Mold Network.nlogox │ ├── Slime.nlogox │ ├── Sunflower Emergent.nlogox │ ├── Sunflower.nlogox │ ├── Termites.nlogox │ ├── Tumor.nlogox │ ├── Unverified │ │ ├── Algae.nlogox │ │ └── Plant Growth.nlogox │ ├── Virus Using Discrete Event Simulator.nlogox │ ├── Virus.nlogox │ ├── Wolf Sheep Predation - Agent Cognition │ │ ├── Wolf Sheep Predation - Micro-Sims Cognitive Model.nlogox │ │ ├── Wolf Sheep Predation - Micro-Sims.nlogox │ │ ├── Wolf Sheep Predation - Micro-Sims.png │ │ └── actions.nls │ └── Wolf Sheep Predation.nlogox ├── Chemistry & Physics │ ├── Boiling.nlogox │ ├── Chaos in a Box.nlogox │ ├── Chemical Reactions │ │ ├── Acids and Bases │ │ │ ├── Buffer.nlogox │ │ │ ├── Strong Acid.nlogox │ │ │ ├── Unverified │ │ │ │ └── Diprotic Acid.nlogox │ │ │ └── Weak Acid.nlogox │ │ ├── B-Z Reaction.nlogox │ │ ├── Chemical Equilibrium.nlogox │ │ ├── Enzyme Kinetics.nlogox │ │ ├── Radical Polymerization.nlogox │ │ ├── Simple Kinetics 1.nlogox │ │ ├── Simple Kinetics 2.nlogox │ │ └── Simple Kinetics 3.nlogox │ ├── Diffusion Limited Aggregation │ │ ├── DLA Alternate Linear.nlogox │ │ ├── DLA Alternate.nlogox │ │ └── DLA.nlogox │ ├── Gas Chromatography.nlogox │ ├── GasLab │ │ ├── GasLab Adiabatic Piston.nlogox │ │ ├── GasLab Atmosphere.nlogox │ │ ├── GasLab Circular Particles.nlogox │ │ ├── GasLab Free Gas.nlogox │ │ ├── GasLab Gas in a Box.nlogox │ │ ├── GasLab Gravity Box.nlogox │ │ ├── GasLab Isothermal Piston.nlogox │ │ ├── GasLab Maxwells Demon.nlogox │ │ ├── GasLab Single Collision.nlogox │ │ ├── GasLab Two Gas.nlogox │ │ └── Unverified │ │ │ ├── GasLab Heat Box.nlogox │ │ │ ├── GasLab Moving Piston.nlogox │ │ │ ├── GasLab Pressure Box.nlogox │ │ │ └── GasLab Second Law.nlogox │ ├── Hydrogen Gas Production.nlogox │ ├── Ising.nlogox │ ├── Kicked Rotator.nlogox │ ├── Kicked Rotators.nlogox │ ├── Materials Science │ │ ├── Crystallization │ │ │ ├── Crystallization Basic.nlogox │ │ │ ├── Crystallization Directed.nlogox │ │ │ └── Crystallization Moving.nlogox │ │ ├── Current in a Semiconductor.nlogox │ │ ├── Dislocation Motion and Deformation.nlogox │ │ ├── Heat Diffusion.nlogox │ │ ├── Interstitial Diffusion.nlogox │ │ ├── Molecular Dynamics Lennard-Jones.nlogox │ │ ├── Monte Carlo Lennard-Jones.nlogox │ │ ├── Polymer Dynamics.nlogox │ │ ├── Radical Polymerization with Chains.nlogox │ │ └── Solid Diffusion.nlogox │ ├── Mechanics │ │ ├── Random Balls.nlogox │ │ └── Unverified │ │ │ ├── Gravitation.nlogox │ │ │ └── N-Bodies.nlogox │ ├── Radioactivity │ │ ├── Decay.nlogox │ │ └── Unverified │ │ │ ├── Reactor Top Down.nlogox │ │ │ └── Reactor X-Section.nlogox │ ├── Sand.nlogox │ ├── Sandpile.nlogox │ ├── Thermostat.nlogox │ ├── Turbulence.nlogox │ ├── Unverified │ │ ├── Osmotic Pressure.nlogox │ │ └── Scattering.nlogox │ └── Waves │ │ ├── Chladni Figures.nlogox │ │ ├── Lattice Gas Automaton.nlogox │ │ ├── Rope.nlogox │ │ ├── Unverified │ │ ├── Doppler.nlogox │ │ ├── Raindrops.nlogox │ │ └── Speakers.nlogox │ │ └── Wave Machine.nlogox ├── Computer Science │ ├── Artificial Neural Net - Multilayer.nlogox │ ├── Artificial Neural Net - Perceptron.nlogox │ ├── Cellular Automata │ │ ├── Brian's Brain.nlogox │ │ ├── CA 1D Elementary.nlogox │ │ ├── CA 1D Simple Examples │ │ │ ├── CA 1D Rule 110.nlogox │ │ │ ├── CA 1D Rule 250.nlogox │ │ │ ├── CA 1D Rule 30 Turtle.nlogox │ │ │ ├── CA 1D Rule 30.nlogox │ │ │ └── CA 1D Rule 90.nlogox │ │ ├── CA 1D Totalistic.nlogox │ │ ├── CA 1D-Squaring.nlogox │ │ ├── CA Continuous.nlogox │ │ ├── CA Stochastic.nlogox │ │ ├── Cyclic CA.nlogox │ │ ├── Life Turtle-Based.nlogox │ │ └── Life.nlogox │ ├── Dining Philosophers.nlogox │ ├── Hex Cell Aggregation.nlogox │ ├── K-Means Clustering.nlogox │ ├── PageRank.nlogox │ ├── Painted Desert Challenge.nlogox │ ├── Particle Swarm Optimization.nlogox │ ├── Particle Systems │ │ ├── Particle System Basic.nlogox │ │ ├── Particle System Flame.nlogox │ │ ├── Particle System Fountain.nlogox │ │ └── Particle System Waterfall.nlogox │ ├── Robby the Robot.nlogox │ ├── Robotic Factory Base Image.png │ ├── Robotic Factory.nlogox │ ├── Simple Genetic Algorithm.nlogox │ ├── Simple Genetic Algorithm.png │ ├── SmoothLife.nlogox │ ├── Turing Machine 2D.nlogox │ ├── Unverified │ │ ├── Merge Sort.nlogox │ │ └── Simulated Annealing.nlogox │ ├── Vants.nlogox │ └── Wandering Letters.nlogox ├── Earth Science │ ├── Climate Change.nlogox │ ├── Continental Divide.nlogox │ ├── Erosion.nlogox │ ├── Fire.nlogox │ ├── Grand Canyon data.txt │ ├── Grand Canyon.nlogox │ ├── Percolation.nlogox │ ├── River Meanders.nlogox │ └── Unverified │ │ └── Lightning.nlogox ├── Games │ ├── Ant Adaptation.nlogox │ ├── Frogger.nlogox │ ├── Frogger.png │ ├── Lunar Lander.nlogox │ ├── Minesweeper.nlogox │ ├── Pac-Man.nlogox │ ├── Planarity.nlogox │ ├── Tetris.nlogox │ ├── Unverified │ │ ├── Pac-Man Level Editor.nlogox │ │ └── Projectile Attack.nlogox │ ├── ant_adaptation_figure.png │ ├── pacmap1.csv │ ├── pacmap2.csv │ ├── pacmap3.csv │ ├── pacmap4.csv │ └── pacmap5.csv ├── Mathematics │ ├── 3D Solids.nlogox │ ├── 3D Surface.nlogox │ ├── Color Fractions.nlogox │ ├── Conic Sections │ │ ├── Emergent Shapes - Ellipse.nlogox │ │ ├── Emergent Shapes - Hyperbola.nlogox │ │ └── Emergent Shapes - Parabola.nlogox │ ├── Division.nlogox │ ├── Fractals │ │ ├── Koch Curve.nlogox │ │ ├── L-System Fractals.nlogox │ │ ├── Mandelbrot.nlogox │ │ ├── Sierpinski Simple.nlogox │ │ ├── Star Fractal.nlogox │ │ └── Tree Simple.nlogox │ ├── Mousetraps.nlogox │ ├── Probability │ │ ├── Binomial Rabbits.nlogox │ │ ├── Birthdays.nlogox │ │ ├── Galton Box.nlogox │ │ ├── ProbLab │ │ │ ├── Dice Stalagmite.nlogox │ │ │ ├── Dice.nlogox │ │ │ ├── Prob Graphs Basic.nlogox │ │ │ ├── Prob Graphs Basic.png │ │ │ ├── ProbLab Genetics.nlogox │ │ │ ├── Random Basic.nlogox │ │ │ ├── Stochastic Patchwork.nlogox │ │ │ └── Unverified │ │ │ │ ├── 9-Blocks.nlogox │ │ │ │ ├── Central Limit Theorem.nlogox │ │ │ │ ├── Equidistant Probability.nlogox │ │ │ │ ├── Equidistant Probability.png │ │ │ │ ├── Expected Value Advanced.nlogox │ │ │ │ ├── Expected Value.nlogox │ │ │ │ ├── Partition Permutation Distribution.nlogox │ │ │ │ ├── Partition Permutation Distribution.png │ │ │ │ ├── Random Basic Advanced.nlogox │ │ │ │ ├── Random Combinations and Permutations.nlogox │ │ │ │ ├── Sample Stalagmite.nlogox │ │ │ │ └── Shuffle Board.nlogox │ │ ├── Random Walk 360.nlogox │ │ ├── Three Doors.nlogox │ │ └── Unverified │ │ │ └── Random Walk Left Right.nlogox │ ├── Pursuit.nlogox │ ├── Rugby.nlogox │ ├── Turtles Circling.nlogox │ ├── Unverified │ │ ├── PANDA BEAR Solo.nlogox │ │ └── Surface Walking 2D.nlogox │ ├── Vector Fields.nlogox │ ├── Voronoi - Emergent.nlogox │ └── Voronoi.nlogox ├── Networks │ ├── Diffusion on a Directed Network.nlogox │ ├── Giant Component.nlogox │ ├── Preferential Attachment.nlogox │ ├── Small Worlds.nlogox │ ├── Team Assembly.nlogox │ └── Virus on a Network.nlogox ├── Philosophy │ └── Signaling Game.nlogox ├── Psychology │ └── Piaget-Vygotsky Game.nlogox ├── Social Science │ ├── Consumer Choice.nlogox │ ├── Distribution Center Discrete Event Simulator │ │ ├── Distribution Center Discrete Event Simulator.nlogox │ │ └── time-series.nls │ ├── Economics │ │ ├── Bidding Market.nlogox │ │ ├── Braess Paradox.nlogox │ │ ├── Fruit Wars.nlogox │ │ ├── Hotelling's Law.nlogox │ │ ├── Limited Order Book.nlogox │ │ ├── Oil Cartel HubNet.nlogox │ │ ├── Oil Cartel HubNet.png │ │ ├── Sugarscape │ │ │ ├── Sugarscape 1 Immediate Growback.nlogox │ │ │ ├── Sugarscape 2 Constant Growback.nlogox │ │ │ ├── Sugarscape 3 Wealth Distribution.nlogox │ │ │ └── sugar-map.txt │ │ ├── Unverified │ │ │ ├── Bank Reserves.nlogox │ │ │ └── Cash Flow.nlogox │ │ └── Wealth Distribution.nlogox │ ├── Ethnocentrism.nlogox │ ├── Hockey.nlogox │ ├── Language Change.nlogox │ ├── Minority Game.nlogox │ ├── Party.nlogox │ ├── Paths.nlogox │ ├── Prisoner's Dilemma │ │ ├── Prisoner's Dilemma Basic Evolutionary.nlogox │ │ ├── Prisoner's Dilemma Basic.nlogox │ │ ├── Prisoner's Dilemma N-Person Iterated.nlogox │ │ └── Prisoner's Dilemma Two Person Iterated.nlogox │ ├── Rebellion.nlogox │ ├── Rumor Mill.nlogox │ ├── Scatter.nlogox │ ├── Segregation.nlogox │ ├── Taxi Cabs.nlogox │ ├── Traffic 2 Lanes.nlogox │ ├── Traffic Basic.nlogox │ ├── Traffic Grid.nlogox │ ├── Unverified │ │ ├── Artificial Anasazi.nlogox │ │ ├── Traffic Intersection.nlogox │ │ └── data │ │ │ ├── adjustedPDSI.txt │ │ │ ├── environment.txt │ │ │ ├── log.txt │ │ │ ├── map.txt │ │ │ ├── settlements.txt │ │ │ └── water.txt │ └── Voting.nlogox └── System Dynamics │ ├── Exponential Growth.nlogox │ ├── Exponential Growth.png │ ├── Logistic Growth.nlogox │ ├── Logistic Growth.png │ ├── Unverified │ ├── Tabonuco Yagrumo Hybrid.nlogox │ ├── Tabonuco Yagrumo.nlogox │ └── Tabonuco Yagrumo.png │ ├── Wolf Sheep Predation (Docked Hybrid).nlogox │ ├── Wolf Sheep Predation (System Dynamics).nlogox │ └── Wolf Sheep Predation (System Dynamics).png ├── bin └── ModelLengths.scala ├── crossReference.conf ├── project └── build.properties ├── src ├── main │ └── scala │ │ └── org │ │ └── nlogo │ │ └── models │ │ ├── Info.scala │ │ ├── LegalInfo.scala │ │ ├── ModelResaver.scala │ │ ├── Notarizer.scala │ │ ├── Stats.scala │ │ ├── Tokens.scala │ │ └── package.scala └── test │ ├── resources │ └── modelwords.txt │ └── scala │ └── org │ └── nlogo │ └── models │ ├── BadInterfacesTests.scala │ ├── BehaviorSpaceTests.scala │ ├── ButtonTests.scala │ ├── CodeTests.scala │ ├── CrossReferenceTests.scala │ ├── InfoTabUrlTests.scala │ ├── InfoTabsTests.scala │ ├── LegalInformationTests.scala │ ├── MergeConflictTests.scala │ ├── ModelCompilationTests.scala │ ├── ModelFileTests.scala │ ├── NLWTests.scala │ ├── NameTests.scala │ ├── PreviewImagesTests.scala │ ├── SpellCheckTests.scala │ ├── TestModels.scala │ ├── UpdateModeTests.scala │ ├── VersionTests.scala │ └── ViewTests.scala └── test ├── Artificial-Neural-Net.txt ├── Fire.txt ├── GasLab.txt ├── HubNet-Template.txt ├── LayoutTests.txt ├── Preferential Attachment Tester.nlogox ├── Really Long Code.nls ├── SDM.txt ├── benchmarks ├── ANN Benchmark.nlogox ├── Ants Benchmark.nlogox ├── BZ Benchmark.nlogox ├── Bureaucrats Benchmark.nlogox ├── CA1D Benchmark.nlogox ├── Erosion Benchmark.nlogox ├── Fire Benchmark.nlogox ├── FireBig Benchmark.nlogox ├── Flocking Benchmark.nlogox ├── GasLabCirc Benchmark.nlogox ├── GasLabNew Benchmark.nlogox ├── GasLabOld Benchmark.nlogox ├── GridWalk Benchmark.nlogox ├── Heatbugs Benchmark.nlogox ├── ImportWorld Benchmark.nlogox ├── Ising Benchmark.nlogox ├── Life Benchmark.nlogox ├── PrefAttach Benchmark.nlogox ├── Team Benchmark.nlogox ├── Termites Benchmark.nlogox ├── VirusNet Benchmark.nlogox ├── Wealth Benchmark.nlogox └── Wolf Benchmark.nlogox ├── lab ├── FireWithExperiments.nlogox ├── FireWithExperiments1-spreadsheet.csv ├── FireWithExperiments1-table.csv ├── FireWithExperiments2-spreadsheet.csv └── FireWithExperiments2-table.csv ├── other ├── Agent Once Button Tester.nlogox ├── BehaviorSpace Example.nlogox ├── Circle Position Tester 2.nlogox ├── Circle Position Tester 3.nlogox ├── Circle Position Tester.nlogox ├── Color Uniqueness Tester.nlogox ├── Cone Tester.nlogox3d ├── Direction Indicator Size Test Case.nlogox ├── DummyMath Benchmark.nlogox ├── DummyMath1 Benchmark.nlogox ├── DummyMath2 Benchmark.nlogox ├── DummyMath3 Benchmark.nlogox ├── Fully Connected Network Benchmark.nlogox ├── Let Benchmark.nlogox ├── Let Inside Ask Benchmark.nlogox ├── List Benchmark.nlogox ├── Once Button Tester.nlogox ├── One-Of Turtles Benchmark.nlogox ├── Plot Coalescing Benchmark.nlogox ├── Plot Slowdown.nlogox ├── Read Long List Test.nlogox ├── Set Difference Speed Tester.nlogox ├── WolfSheepShape Benchmark.nlogox ├── dense network tester.nlogox ├── every tester.nlogox ├── include test.nlogox ├── include test.nls ├── include%20test.nls └── print test.nlogox ├── sdm-dt-increment.nlogox ├── sdm-order-of-operations.nlogox └── stats └── usage_of_primitives.svg /.github/workflows/main.yml: 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