├── .flake8 ├── .github ├── ISSUE_TEMPLATE │ ├── bug_report.md │ ├── feature_request.md │ └── question.md └── workflows │ ├── ci.yml │ └── omv-ci.yml ├── .gitignore ├── CONTRIBUTING.md ├── HISTORY.md ├── LEMSexamples ├── LEMS_NML2_Ex0_IaF.xml ├── LEMS_NML2_Ex10_Q10.xml ├── LEMS_NML2_Ex11_STDP.xml ├── LEMS_NML2_Ex12_Net2.xml ├── LEMS_NML2_Ex13_Instances.xml ├── LEMS_NML2_Ex14_PyNN.xml ├── LEMS_NML2_Ex15_CaDynamics.xml ├── LEMS_NML2_Ex16_Inputs.xml ├── LEMS_NML2_Ex17_Tissue.xml ├── LEMS_NML2_Ex18_GHK.xml ├── LEMS_NML2_Ex19_GapJunctions.xml ├── LEMS_NML2_Ex19a_GapJunctionInstances.xml ├── LEMS_NML2_Ex1_HH.xml ├── LEMS_NML2_Ex20_AnalogSynapses.xml ├── LEMS_NML2_Ex20a_AnalogSynapsesHH.xml ├── LEMS_NML2_Ex21_CurrentBasedSynapses.xml ├── LEMS_NML2_Ex22_PinskyRinzelCA3.xml ├── LEMS_NML2_Ex23_Spiketimes.xml ├── LEMS_NML2_Ex24_FractionalConductance.xml ├── LEMS_NML2_Ex25_MultiComp.xml ├── LEMS_NML2_Ex26_Weights.xml ├── LEMS_NML2_Ex27_MultiSynapses.xml ├── LEMS_NML2_Ex2_Izh.xml ├── LEMS_NML2_Ex3_Net.xml ├── LEMS_NML2_Ex4_KS.xml ├── LEMS_NML2_Ex4a_KS.xml ├── LEMS_NML2_Ex5_DetCell.xml ├── LEMS_NML2_Ex6_NMDA.xml ├── LEMS_NML2_Ex7_STP.xml ├── LEMS_NML2_Ex8_AdEx.xml ├── LEMS_NML2_Ex9_FN.xml ├── morphologies │ ├── .test.jnml.omt │ ├── .test.jnmleden.multi.omt │ ├── .test.jnmleden.multi.out.omt │ ├── .test.jnmleden.omt │ ├── .test.jnmleden.out.omt │ ├── .test.jnmlnetpyne.multi.omt │ ├── .test.jnmlnetpyne.multi.out.omt │ ├── .test.jnmlnetpyne.omt │ ├── .test.jnmlnetpyne.out.omt │ ├── .test.jnmlnrn.multi.omt │ ├── .test.jnmlnrn.multi.out.omt │ ├── .test.jnmlnrn.omt │ ├── .test.jnmlnrn.out.omt │ ├── .test.mep │ ├── .test.multi.mep │ ├── .test.validate.omt │ ├── Ca_conc.nml │ ├── Ca_pyr.channel.nml │ ├── Kahp_pyr.channel.nml │ ├── Kdr_pyr.channel.nml │ ├── LEMS_m_in_b_in.xml │ ├── LEMS_m_in_b_out.xml │ ├── LEMS_m_out_b_in.xml │ ├── LEMS_m_out_b_out.xml │ ├── LEMS_pyrfull_in.xml │ ├── LEMS_pyrfull_out.xml │ ├── LeakConductance_pyr.channel.nml │ ├── Na_pyr.channel.nml │ ├── README.md │ ├── network_m_out_b_out.net.nml │ ├── pyr_4_sym.cell.nml │ ├── pyr_4_sym_soma_morph.nml │ ├── pyr_biophysics.nml │ ├── pyr_full_morph_biophys.nml │ ├── pyr_full_out.cell.nml │ ├── pyr_morphology.cell.nml │ ├── pyr_soma_m_in_b_in.cell.nml │ ├── pyr_soma_m_in_b_out.cell.nml │ ├── pyr_soma_m_out_b_in.cell.nml │ ├── pyr_soma_m_out_b_out.cell.nml │ ├── pyrfull_in.net.nml │ ├── pyrfull_out.net.nml │ └── test_all.sh ├── regression-tests │ ├── LEMS_NML2_Ex5_DetCell_unformatted.xml │ └── results │ │ └── README ├── results │ └── README └── test │ ├── .test.ex0.jnml.omt │ ├── .test.ex0.jnmleden.omt │ ├── .test.ex0.jnmlnetpyne.omt │ ├── .test.ex0.jnmlnrn.omt │ ├── .test.ex0.mep │ ├── .test.ex0.pylems.omt.todo │ ├── .test.ex1.jnml.omt │ ├── .test.ex1.jnmlbrian2.omt │ ├── .test.ex1.jnmlnrn.omt │ ├── .test.ex1.mep │ ├── .test.ex1.pylems.omt │ ├── .test.ex10.jnml.omt │ ├── .test.ex10.jnmlnrn.omt │ ├── .test.ex10.mep │ ├── .test.ex11.jnml.omt │ ├── .test.ex12.jnml.omt │ ├── .test.ex12.jnmlnrn.omt │ ├── .test.ex12.mep │ ├── .test.ex13.jnml.omt │ ├── .test.ex14.jnml.omt │ ├── .test.ex14.jnmlnrn.omt │ ├── .test.ex14.mep │ ├── .test.ex15.jnml.omt │ ├── .test.ex15.jnmlnrn.omt │ ├── .test.ex15.mep │ ├── .test.ex16.jnml.omt │ ├── .test.ex16.jnmlnrn.omt │ ├── .test.ex16.mep │ ├── .test.ex17.jnml.omt │ ├── .test.ex18.jnml.omt │ ├── .test.ex18.jnmlnrn.omt │ ├── .test.ex18.mep │ ├── .test.ex19.jnml.omt │ ├── .test.ex19.jnmlnrn.omt │ ├── .test.ex19.mep │ ├── .test.ex19a.jnml.omt │ ├── .test.ex19a.jnmlnetpyne.omt │ ├── .test.ex19a.jnmlnrn.omt │ ├── .test.ex2.jnml.omt │ ├── .test.ex20.jnml.omt │ ├── .test.ex20a.jnml.omt │ ├── .test.ex20a.jnmlnrn.omt │ ├── .test.ex20a.mep │ ├── .test.ex21.jnml.omt │ ├── .test.ex21.jnmlnrn.omt │ ├── .test.ex21.mep │ ├── .test.ex22.jnml.omt │ ├── .test.ex22.mep │ ├── .test.ex23.jnml.omt │ ├── .test.ex23.jnmlnrn.omt │ ├── .test.ex24.jnml.omt │ ├── .test.ex24.jnmlnrn.omt │ ├── .test.ex24.mep │ ├── .test.ex25.jnmlnetpyne.omt │ ├── .test.ex25.jnmlnrn.omt │ ├── .test.ex25.mep │ ├── .test.ex26.jnml.omt │ ├── .test.ex26.jnmlnrn.omt │ ├── .test.ex26.mep │ ├── .test.ex27.jnml.omt │ ├── .test.ex27.jnmlnrn.omt │ ├── .test.ex3.jnml.omt │ ├── .test.ex3.jnmlnrn.omt │ ├── .test.ex3.mep │ ├── .test.ex3.pylems.omt │ ├── .test.ex4.jnml.omt │ ├── .test.ex5.jnml.omt │ ├── .test.ex5.jnmlbrian2.omt │ ├── .test.ex5.jnmleden.omt │ ├── .test.ex5.jnmlmoose.omt │ ├── .test.ex5.jnmlnetpyne.omt │ ├── .test.ex5.jnmlnrn.omt │ ├── .test.ex5.mep │ ├── .test.ex5.pylems.omt │ ├── .test.ex6.jnml.omt │ ├── .test.ex6.jnmlnrn.omt │ ├── .test.ex6.mep │ ├── .test.ex6.pylems.omt │ ├── .test.ex7.jnml.omt │ ├── .test.ex7.jnmlnrn.omt │ ├── .test.ex7.mep │ ├── .test.ex8.jnml.omt │ ├── .test.ex9.jnml.omt │ ├── .test.ex9.jnmlbrian2.omt │ ├── .test.ex9.jnmleden.omt │ ├── .test.ex9.jnmlnrn.omt │ ├── .test.ex9.mep │ ├── .test.ex9.pylems.omt │ └── .test.validate.omt ├── LICENSE.lesser ├── NeuroML2CoreTypes ├── Cells.xml ├── Channels.xml ├── Inputs.xml ├── Networks.xml ├── NeuroML2CoreTypes.xml ├── NeuroMLCoreCompTypes.xml ├── NeuroMLCoreDimensions.xml ├── PyNN.xml ├── Simulation.xml ├── Synapses.xml └── results │ └── README ├── README.md ├── Schemas ├── LEMS │ └── README ├── NeuroML2 │ ├── NeuroML_v2.0.xsd │ ├── NeuroML_v2.1.xsd │ ├── NeuroML_v2.2.xsd │ ├── NeuroML_v2.3.1.xsd │ ├── NeuroML_v2.3.xsd │ ├── NeuroML_v2alpha.xsd │ ├── NeuroML_v2beta.xsd │ ├── NeuroML_v2beta1.xsd │ ├── NeuroML_v2beta2.xsd │ ├── NeuroML_v2beta3.xsd │ ├── NeuroML_v2beta4.xsd │ ├── NeuroML_v2beta5.xsd │ └── README └── README ├── docs ├── Cells.html ├── Channels.html ├── Inputs.html ├── Networks.html ├── NeuroMLCoreCompTypes.html ├── NeuroMLCoreDimensions.html ├── PyNN.html ├── README.md ├── Synapses.html ├── UsingLEMSWithNeuroML2.md ├── assets │ └── css │ │ └── bootstrap.css └── generate.py ├── examples ├── NML2_AbstractCells.nml ├── NML2_AnalogSynapses.nml ├── NML2_AnalogSynapsesHH.nml ├── NML2_FullCell.nml ├── NML2_FullNeuroML.nml ├── 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