├── .codecov.yml ├── .gitattributes ├── .github ├── CODE_OF_CONDUCT.rst ├── ISSUE_TEMPLATE │ ├── bug_report.yml │ ├── config.yml │ ├── documentation.yml │ └── feature_request.yml ├── PULL_REQUEST_TEMPLATE.md ├── PULL_REQUEST_TEMPLATE │ └── release.md └── workflows │ ├── check_sphinx_links.yml │ ├── codespell.yml │ ├── deploy_release.yml │ ├── generate_test_files.yml │ ├── project_action.yml │ ├── ruff.yml │ ├── run_all_tests.yml │ ├── run_coverage.yml │ ├── run_dandi_read_tests.yml │ ├── run_inspector_tests.yml │ └── run_tests.yml ├── .gitignore ├── .gitmodules ├── .readthedocs.yaml ├── CHANGELOG.md ├── Legal.txt ├── README.rst ├── docs ├── CONTRIBUTING.rst ├── Makefile ├── gallery │ ├── README.txt │ ├── advanced_io │ │ ├── README.txt │ │ ├── h5dataio.py │ │ ├── parallelio.py │ │ ├── plot_editing.py │ │ ├── plot_iterative_write.py │ │ ├── plot_linking_data.py │ │ ├── plot_zarr_io.py │ │ └── streaming.py │ ├── domain │ │ ├── README.txt │ │ ├── ecephys.py │ │ ├── images.py │ │ ├── ogen.py │ │ ├── ophys.py │ │ ├── plot_behavior.py │ │ ├── plot_icephys.py │ │ └── plot_icephys_pandas.py │ └── general │ │ ├── README.txt │ │ ├── add_remove_containers.py │ │ ├── experimenter_termset.yaml │ │ ├── extensions.py │ │ ├── nwb_gallery_config.yaml │ │ ├── nwb_subject_termset.yaml │ │ ├── object_id.py │ │ ├── plot_configurator.py │ │ ├── plot_file.py │ │ ├── plot_read_basics.py │ │ ├── plot_timeintervals.py │ │ └── scratch.py ├── make.bat ├── notebooks │ ├── convert-crcns-ret-1-meisterlab-compare-nwb-1.0.6.ipynb │ ├── convert-crcns-ret-1-meisterlab.ipynb │ ├── convert-crcns-ret-1-old │ │ ├── convert-crcns-ret-1-meisterlab-with-custom-extensions-and-external-stimulus.ipynb │ │ ├── convert-crcns-ret-1-meisterlab-with-custom-extensions.ipynb │ │ └── convert-crcns-ret-1-meisterlab-without-custom-extensions.ipynb │ └── read-Allen-Brain-Oservatory.ipynb └── source │ ├── _static │ ├── Behavior.png │ ├── Behavior.svg │ ├── ElectricalSeries.png │ ├── ElectricalSeries.svg │ ├── Electrodes.png │ ├── Electrodes.svg │ ├── Fluorescence.png │ ├── Fluorescence.svg │ ├── ImageSegmentation.png │ ├── ImageSegmentation.svg │ ├── ImagingPlane.png │ ├── ImagingPlane.svg │ ├── LFP.png │ ├── LFP.svg │ ├── PlaneSegmentation.png │ ├── PlaneSegmentation.svg │ ├── Position.png │ ├── Position.svg │ ├── RoiResponseSeries.png │ ├── RoiResponseSeries.svg │ ├── SpatialSeries.png │ ├── SpatialSeries.svg │ ├── Subject.png │ ├── Subject.svg │ ├── TimeSeries.png │ ├── TimeSeries.svg │ ├── Trials.png │ ├── Trials.svg │ ├── TwoPhotonSeries.png │ ├── TwoPhotonSeries.svg │ ├── css │ │ ├── custom.css │ │ └── nwb_assistant.css │ ├── demo_dandi_download_data.png │ ├── demo_dandi_select_folder.png │ ├── demo_dandi_view_files_in_dataset.png │ ├── theme_overrides.css │ └── trials_example.png │ ├── api_docs.rst │ ├── conf.py │ ├── contributing.rst │ ├── export.rst │ ├── figures │ ├── favicon_96.png │ ├── gallery_thumbnail_plot_nwbzarrio.png │ ├── gallery_thumbnails.pptx │ ├── gallery_thumbnails_add_remove_containers.png │ ├── gallery_thumbnails_allenbrainobservatory.png │ ├── gallery_thumbnails_behavior.png │ ├── gallery_thumbnails_configurator.png │ ├── gallery_thumbnails_ecephys.png │ ├── gallery_thumbnails_editing.png │ ├── gallery_thumbnails_extensions.png │ ├── gallery_thumbnails_file.png │ ├── gallery_thumbnails_h5dataio.png │ ├── gallery_thumbnails_icephys.png │ ├── gallery_thumbnails_icephys_pandas.png │ ├── gallery_thumbnails_icephys_sweeptable.png │ ├── gallery_thumbnails_image_data.png │ ├── gallery_thumbnails_iterative_write.png │ ├── gallery_thumbnails_linking_data.png │ ├── gallery_thumbnails_objectid.png │ ├── gallery_thumbnails_ogen.png │ ├── gallery_thumbnails_ophys.png │ ├── gallery_thumbnails_parallelio.png │ ├── gallery_thumbnails_read_basics.png │ ├── gallery_thumbnails_scratch.png │ ├── gallery_thumbnails_streaming.png │ ├── gallery_thumbnails_timeintervals.png │ ├── logo_nwb.pdf │ ├── logo_nwb.png │ ├── logo_pynwb.png │ ├── logo_pynwb.pptx │ ├── logo_pynwb_with_margin.png │ ├── plot_icephys_figures.pptx │ ├── plot_icephys_intracellular_recordings_table.png │ ├── plot_icephys_table_hierarchy.png │ ├── pynwb_package_overview.pptx │ ├── software_architecture.pdf │ ├── software_architecture.png │ ├── software_architecture.pptx │ ├── software_architecture_buildmanager.pdf │ ├── software_architecture_buildmanager.png │ ├── software_architecture_buildmanager.pptx │ ├── software_architecture_concepts.pdf │ ├── software_architecture_concepts.png │ ├── software_architecture_concepts.pptx │ ├── software_architecture_design_choices.pdf │ ├── software_architecture_design_choices.png │ ├── software_architecture_design_choices.pptx │ ├── software_architecture_formio.pdf │ ├── software_architecture_formio.png │ ├── software_architecture_formio.pptx │ ├── software_architecture_mainconcepts.pdf │ ├── software_architecture_mainconcepts.png │ └── software_architecture_mainconcepts.pptx │ ├── index.rst │ ├── install_developers.rst │ ├── install_users.rst │ ├── legal.rst │ ├── make_a_release.rst │ ├── make_a_tutorial.rst │ ├── overview_citing.rst │ ├── overview_software_architecture.rst │ ├── software_process.rst │ ├── testing │ ├── index.rst │ ├── make_roundtrip_test.rst │ └── mock.rst │ ├── update_requirements.rst │ └── validation.rst ├── environment-ros3.yml ├── license.txt ├── pyproject.toml ├── requirements-dev.txt ├── requirements-doc.txt ├── requirements-min.txt ├── requirements-opt.txt ├── requirements.txt ├── scripts └── add_object_id.py ├── src └── pynwb │ ├── __init__.py │ ├── _due.py │ ├── base.py │ ├── behavior.py │ ├── config │ ├── nwb_config.yaml │ └── nwb_subject_termset.yaml │ ├── core.py │ ├── device.py │ ├── ecephys.py │ ├── epoch.py │ ├── file.py │ ├── icephys.py │ ├── image.py │ ├── io │ ├── __init__.py │ ├── base.py │ ├── behavior.py │ ├── core.py │ ├── device.py │ ├── ecephys.py │ ├── epoch.py │ ├── file.py │ ├── icephys.py │ ├── image.py │ ├── misc.py │ ├── ogen.py │ ├── ophys.py │ ├── retinotopy.py │ └── utils.py │ ├── legacy │ ├── __init__.py │ ├── io │ │ ├── __init__.py │ │ ├── base.py │ │ ├── behavior.py │ │ ├── ecephys.py │ │ ├── epoch.py │ │ ├── file.py │ │ ├── icephys.py │ │ ├── image.py │ │ ├── misc.py │ │ ├── ogen.py │ │ ├── ophys.py │ │ └── retinotopy.py │ └── map.py │ ├── misc.py │ ├── ogen.py │ ├── ophys.py │ ├── resources.py │ ├── retinotopy.py │ ├── spec.py │ ├── testing │ ├── __init__.py │ ├── icephys_testutils.py │ ├── make_test_files.py │ ├── mock │ │ ├── __init__.py │ │ ├── base.py │ │ ├── behavior.py │ │ ├── device.py │ │ ├── ecephys.py │ │ ├── file.py │ │ ├── icephys.py │ │ ├── ogen.py │ │ ├── ophys.py │ │ └── utils.py │ ├── testh5io.py │ └── utils.py │ ├── validation.py │ └── validation_cli.py ├── test.py ├── tests ├── __init__.py ├── back_compat │ ├── 1.0.2_nwbfile.nwb │ ├── 1.0.2_str_experimenter.nwb │ ├── 1.0.2_str_pub.nwb │ ├── 1.0.3_nwbfile.nwb │ ├── 1.0.3_str_experimenter.nwb │ ├── 1.0.3_str_pub.nwb │ ├── 1.1.0_nwbfile.nwb │ ├── 1.1.0_str_experimenter.nwb │ ├── 1.1.0_str_pub.nwb │ ├── 1.1.2_nwbfile.nwb │ ├── 1.1.2_str_experimenter.nwb │ ├── 1.1.2_str_pub.nwb │ ├── 1.5.1_imageseries_no_data.nwb │ ├── 1.5.1_imageseries_no_unit.nwb │ ├── 1.5.1_timeseries_no_data.nwb │ ├── 1.5.1_timeseries_no_unit.nwb │ ├── 2.1.0_imageseries_no_data.nwb │ ├── 2.1.0_imageseries_non_external_format.nwb │ ├── 2.1.0_imageseries_nonmatch_starting_frame.nwb │ ├── 2.1.0_nwbfile_with_extension.nwb │ ├── 2.2.0_subject_no_age__reference.nwb │ ├── 3.0.0_decompositionseries_bands_dynamic_table.nwb │ ├── 3.0.0_electrodes_dynamic_table.nwb │ ├── 3.0.0_fiber_photometry_extension.nwb │ ├── 3.0.0_ophys_devices_extension.nwb │ ├── 3.0.0_optogenetics_extension.nwb │ ├── __init__.py │ ├── test_import_structure.py │ └── test_read.py ├── coverage │ └── runCoverage ├── integration │ ├── __init__.py │ ├── hdf5 │ │ ├── __init__.py │ │ ├── test_base.py │ │ ├── test_behavior.py │ │ ├── test_device.py │ │ ├── test_ecephys.py │ │ ├── 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