├── .Rbuildignore ├── .gitignore ├── DESCRIPTION ├── LICENSE.txt ├── NAMESPACE ├── NEWS ├── R ├── benchmark.R ├── correlate.R ├── data.R ├── deconvolute.R ├── get_TPM.R ├── get_decon_methods.R ├── load_ABIS.R ├── model_dtangle.R ├── model_nnls.R ├── model_ols.R ├── model_qprog.R ├── model_qprogwc.R ├── model_rls.R ├── model_svr.R ├── plot_benchmark.R ├── plot_correlate.R ├── plot_deconvolute.R ├── plot_proportions.R ├── plot_regress.R ├── plot_similarity.R └── utility_functions.R ├── README.md ├── data ├── bulkRNAseq_ABIS.RData ├── groundTruth_ABIS.RData ├── sigMatrix_ABIS_S0.RData ├── sigMatrix_ABIS_S1.RData ├── sigMatrix_ABIS_S2.RData └── sigMatrix_ABIS_S3.RData ├── man ├── benchmark.Rd ├── bulkRNAseq_ABIS.Rd ├── correlate.Rd ├── deconvolute.Rd ├── get_TPM.Rd ├── get_decon_methods.Rd ├── groundTruth_ABIS.Rd ├── load_ABIS.Rd ├── plot_benchmark.Rd ├── plot_correlate.Rd ├── plot_deconvolute.Rd ├── plot_proportions.Rd ├── plot_regress.Rd ├── plot_similarity.Rd ├── sigMatrix_ABIS_S0.Rd ├── sigMatrix_ABIS_S1.Rd ├── sigMatrix_ABIS_S2.Rd └── sigMatrix_ABIS_S3.Rd ├── tests ├── testthat.R └── testthat │ ├── test-data.R │ └── test-deconvolution.R └── vignettes ├── granulator.Rmd └── references.bib /.Rbuildignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Novartis/granulator/HEAD/.Rbuildignore -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Novartis/granulator/HEAD/.gitignore -------------------------------------------------------------------------------- /DESCRIPTION: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Novartis/granulator/HEAD/DESCRIPTION -------------------------------------------------------------------------------- /LICENSE.txt: 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