├── .Rbuildignore ├── .github └── workflows │ ├── R_CMD_check_Hades.yaml │ └── R_CMD_check_main_weekly.yaml ├── .gitignore ├── DESCRIPTION ├── NAMESPACE ├── NEWS.md ├── R ├── PhenotypeLibrary.R └── Phenotypes.R ├── README.md ├── _pkgdown.yml ├── compare_versions ├── deploy.sh ├── docs ├── 404.html ├── articles │ ├── AutomatedValidityChecksForCohortDefinition.html │ ├── CohortDefinitionSubmissionRequirements.html │ ├── CohortDefinitionsInOhdsiPhenotypeLibrary.html │ ├── CohortDefinitionsInOhdsiPhenotypeLibrary_files │ │ ├── core-js-2.5.3 │ │ │ ├── LICENSE │ │ │ ├── package.json │ │ │ └── shim.min.js │ │ ├── htmltools-fill-0.5.8.1 │ │ │ └── fill.css │ │ ├── htmlwidgets-1.5.4 │ │ │ └── htmlwidgets.js │ │ ├── htmlwidgets-1.6.1 │ │ │ └── htmlwidgets.js │ │ ├── htmlwidgets-1.6.2 │ │ │ └── htmlwidgets.js │ │ ├── htmlwidgets-1.6.3 │ │ │ └── htmlwidgets.js │ │ ├── htmlwidgets-1.6.4 │ │ │ └── htmlwidgets.js │ │ ├── react-17.0.0 │ │ │ ├── AUTHORS │ │ │ ├── LICENSE.txt │ │ │ ├── react-dom.min.js │ │ │ └── react.min.js │ │ ├── react-18.2.0 │ │ │ ├── AUTHORS │ │ │ ├── LICENSE.txt │ │ │ ├── react-dom.min.js │ │ │ └── react.min.js │ │ ├── reactable-0.4.3 │ │ │ ├── reactable.css │ │ │ ├── reactable.js │ │ │ ├── reactable.js.map │ │ │ ├── reactable.server.js │ │ │ ├── reactable.server.js.LICENSE.txt │ │ │ ├── reactable.server.js.map │ │ │ └── reactable.yaml │ │ ├── reactable-0.4.4 │ │ │ ├── reactable.css │ │ │ ├── reactable.js │ │ │ ├── reactable.js.map │ │ │ ├── reactable.server.js │ │ │ ├── reactable.server.js.LICENSE.txt │ │ │ ├── reactable.server.js.map │ │ │ └── reactable.yaml │ │ ├── reactable-binding-0.3.0 │ │ │ └── reactable.js │ │ ├── reactable-binding-0.4.3 │ │ │ └── reactable.js │ │ ├── reactable-binding-0.4.4 │ │ │ └── reactable.js │ │ ├── reactwidget-1.0.0 │ │ │ ├── react-tools.js │ │ │ └── react-tools.js.map │ │ └── reactwidget-2.0.0 │ │ │ └── react-tools.js │ ├── ConceptSetDefinitionsInOhdsiPhenotypeLibrary.html │ ├── ConceptSetDefinitionsInOhdsiPhenotypeLibrary_files │ │ ├── core-js-2.5.3 │ │ │ ├── LICENSE │ │ │ ├── package.json │ │ │ └── shim.min.js │ │ ├── htmltools-fill-0.5.8.1 │ │ │ └── fill.css │ │ ├── htmlwidgets-1.6.2 │ │ │ └── htmlwidgets.js │ │ ├── htmlwidgets-1.6.3 │ │ │ └── htmlwidgets.js │ │ ├── htmlwidgets-1.6.4 │ │ │ └── htmlwidgets.js │ │ ├── react-17.0.0 │ │ │ ├── AUTHORS │ │ │ ├── LICENSE.txt │ │ │ ├── react-dom.min.js │ │ │ └── react.min.js │ │ ├── react-18.2.0 │ │ │ ├── AUTHORS │ │ │ ├── LICENSE.txt │ │ │ ├── react-dom.min.js │ │ │ └── react.min.js │ │ ├── reactable-0.4.4 │ │ │ ├── reactable.css │ │ │ ├── reactable.js │ │ │ ├── reactable.js.map │ │ │ ├── reactable.server.js │ │ │ ├── reactable.server.js.LICENSE.txt │ │ │ ├── reactable.server.js.map │ │ │ └── reactable.yaml │ │ ├── reactable-binding-0.4.4 │ │ │ └── reactable.js │ │ ├── reactwidget-1.0.0 │ │ │ ├── react-tools.js │ │ │ └── react-tools.js.map │ │ └── reactwidget-2.0.0 │ │ │ └── react-tools.js │ ├── GuidanceOnClinicalDescriptionForConditionPhenotypes.html │ ├── GuidanceOnCohortDefinitionSetRObject.html │ ├── GuidanceOnLiteratureReview.html │ ├── GuidanceOnPerformingPeerReview.html │ ├── GuidanceOnWritingAnEvaluationReport.html │ ├── GuidanceOnWritingCohortDefinitionLogicDescription.html │ ├── HowToUsePhenotypeLibraryRPackage.html │ ├── ReservedWordsWithSpecialMeaningToPhenotypers.html │ ├── SubmittedCohortDefinitions.html │ ├── ValidityChecksForCohortDefinitions.html │ └── index.html ├── authors.html ├── bootstrap-toc.css ├── bootstrap-toc.js ├── docsearch.css ├── docsearch.js ├── index.html ├── link.svg ├── news │ └── index.html ├── pkgdown.css ├── pkgdown.js ├── pkgdown.yml ├── reference │ ├── PhenotypeLibrary-package.html │ ├── Rplot001.png │ ├── getPhenotypeLog.html │ ├── getPlCohortDefinitionSet.html │ ├── getPlConceptDefinitionSet.html │ ├── index.html │ ├── listPhenotypes.html │ └── updatePhenotypeLog.html └── sitemap.xml ├── extras ├── PackageMaintenance.R ├── PostProcess.R ├── Script to Check Cohort definitions for domain change and vocabulary drift.R ├── ScriptExampleToBulkImportFromAnotherSource.R ├── ScriptToRebuildDescription.R ├── UpdatePhenotypes.R └── VP Cipher Mapping.R ├── inst ├── Cohorts.csv ├── ConceptSetsInCohortDefinition.RDS ├── OrcidLog.csv ├── cohorts │ ├── 10.json │ ├── 100.json │ ├── 1000.json │ ├── 1001.json │ ├── 1002.json │ ├── 1003.json │ ├── 1004.json │ ├── 1005.json │ ├── 1006.json │ ├── 1007.json │ ├── 1009.json │ ├── 1010.json │ ├── 1011.json │ ├── 1012.json │ ├── 1013.json │ ├── 1016.json │ ├── 1017.json │ ├── 1018.json │ ├── 1019.json │ ├── 1020.json │ ├── 1021.json │ ├── 1022.json │ ├── 1023.json │ ├── 1024.json │ ├── 1025.json │ ├── 1026.json │ ├── 1027.json │ ├── 1028.json │ ├── 1029.json │ ├── 1030.json │ ├── 1031.json │ ├── 1032.json │ ├── 1033.json │ ├── 1034.json │ ├── 1035.json │ ├── 1036.json │ ├── 1037.json │ ├── 1038.json │ ├── 1039.json │ ├── 1040.json │ ├── 1041.json │ ├── 1042.json │ ├── 1043.json │ ├── 1044.json │ ├── 1045.json │ ├── 1046.json │ ├── 1047.json │ ├── 1048.json │ ├── 1049.json │ ├── 1050.json │ ├── 1051.json │ ├── 1052.json │ ├── 1053.json │ ├── 1054.json │ ├── 1055.json │ ├── 1056.json │ ├── 1057.json │ ├── 1058.json │ ├── 1059.json │ ├── 1060.json │ ├── 1061.json │ ├── 1062.json │ ├── 1063.json │ ├── 1064.json │ ├── 1065.json │ ├── 1066.json │ ├── 1067.json │ ├── 1068.json │ ├── 1069.json │ ├── 1070.json │ ├── 1071.json │ ├── 1072.json │ ├── 1073.json │ ├── 1074.json │ ├── 1075.json │ ├── 1076.json │ ├── 1077.json │ ├── 1078.json │ ├── 1079.json │ ├── 1080.json │ ├── 1081.json │ ├── 1082.json │ ├── 1083.json │ ├── 1084.json │ ├── 1085.json │ ├── 1086.json │ ├── 1087.json │ ├── 1088.json │ ├── 1089.json │ ├── 1090.json │ ├── 1091.json │ ├── 1093.json │ ├── 1094.json │ ├── 1095.json │ ├── 1097.json │ ├── 1098.json │ ├── 1099.json │ ├── 11.json │ ├── 1100.json │ ├── 1101.json │ ├── 1102.json │ ├── 1103.json │ ├── 1104.json │ ├── 1105.json │ ├── 1106.json │ ├── 1150.json │ ├── 1151.json │ ├── 1152.json │ ├── 1153.json │ ├── 1154.json │ ├── 1155.json │ ├── 1156.json │ ├── 1157.json │ ├── 1158.json │ ├── 1159.json │ ├── 1160.json │ ├── 1161.json │ ├── 1162.json │ ├── 1163.json │ ├── 1164.json │ ├── 1165.json │ ├── 1166.json │ ├── 1167.json │ ├── 1168.json │ ├── 1169.json │ ├── 1170.json │ ├── 1171.json │ ├── 1172.json │ ├── 1173.json │ ├── 1174.json │ ├── 1175.json │ ├── 1176.json │ ├── 1177.json │ ├── 1178.json │ ├── 1179.json │ ├── 1180.json │ ├── 1181.json │ ├── 1182.json │ ├── 1183.json │ ├── 1184.json │ ├── 1185.json │ ├── 1186.json │ ├── 1187.json │ ├── 1188.json │ ├── 1189.json │ ├── 119.json │ ├── 1190.json │ ├── 1191.json │ ├── 1192.json │ ├── 1193.json │ ├── 1194.json │ ├── 1195.json │ ├── 1196.json │ ├── 1197.json │ ├── 1198.json │ ├── 1199.json │ ├── 12.json │ ├── 1200.json │ ├── 1201.json │ ├── 1202.json │ ├── 1203.json │ ├── 1204.json │ ├── 1205.json │ ├── 1206.json │ ├── 1207.json │ ├── 1208.json │ ├── 1209.json │ ├── 1210.json │ ├── 1211.json │ ├── 1212.json │ ├── 1213.json │ ├── 1214.json │ ├── 1215.json │ ├── 1217.json │ ├── 1219.json │ ├── 1220.json │ ├── 1221.json │ ├── 1222.json │ ├── 1223.json │ ├── 1224.json │ ├── 1225.json │ ├── 1226.json │ ├── 1227.json │ ├── 1228.json │ ├── 1229.json │ ├── 123.json │ ├── 1231.json │ ├── 1244.json │ ├── 1261.json │ ├── 1262.json │ ├── 1263.json │ ├── 1264.json │ ├── 1265.json │ ├── 1266.json │ ├── 1267.json │ ├── 1268.json │ ├── 1269.json │ ├── 1270.json │ ├── 1271.json │ ├── 1272.json │ ├── 1273.json │ ├── 1274.json │ ├── 1275.json │ ├── 1276.json │ ├── 1277.json │ ├── 1278.json │ ├── 1279.json │ ├── 1280.json │ ├── 1281.json │ ├── 1282.json │ ├── 1283.json │ ├── 1284.json │ ├── 1285.json │ ├── 1286.json │ ├── 1287.json │ ├── 1288.json │ ├── 1289.json │ ├── 1290.json │ ├── 1291.json │ ├── 1292.json │ ├── 1293.json │ ├── 1294.json │ ├── 1295.json │ ├── 1296.json │ ├── 1297.json │ ├── 1298.json │ ├── 1299.json │ ├── 13.json │ ├── 1300.json │ ├── 1301.json │ ├── 1303.json │ ├── 1304.json │ ├── 1305.json │ ├── 1306.json │ ├── 1307.json │ ├── 1308.json │ ├── 1309.json │ ├── 1310.json │ ├── 1311.json │ ├── 1312.json │ ├── 1313.json │ ├── 1314.json │ ├── 1315.json │ ├── 1316.json │ ├── 1317.json │ ├── 1318.json │ ├── 1329.json │ ├── 1330.json │ ├── 1331.json │ ├── 1332.json │ ├── 1333.json │ ├── 1334.json │ ├── 1336.json │ ├── 1337.json │ ├── 1338.json │ ├── 1339.json │ ├── 134.json │ ├── 1340.json │ ├── 1341.json │ ├── 1342.json │ ├── 1343.json │ ├── 1344.json │ ├── 1345.json │ ├── 1346.json │ ├── 1347.json │ ├── 1348.json │ ├── 1349.json │ ├── 1350.json │ ├── 1351.json │ ├── 1352.json │ ├── 1353.json │ ├── 1354.json │ ├── 1355.json │ ├── 1356.json │ ├── 1357.json │ ├── 1358.json │ ├── 1359.json │ ├── 1360.json │ ├── 1361.json │ ├── 1362.json │ ├── 1363.json │ ├── 1364.json │ ├── 1365.json │ ├── 1366.json │ ├── 1367.json │ ├── 1368.json │ ├── 1369.json │ ├── 1370.json │ ├── 1371.json │ ├── 1372.json │ ├── 1373.json │ ├── 1374.json │ ├── 1375.json │ ├── 1376.json │ ├── 1377.json │ ├── 1378.json │ ├── 1379.json │ ├── 1380.json │ ├── 1381.json │ ├── 1382.json │ ├── 1383.json │ ├── 1384.json │ ├── 1385.json │ ├── 1386.json │ ├── 1387.json │ ├── 1388.json │ ├── 1389.json │ ├── 1390.json │ ├── 1391.json │ ├── 1392.json │ ├── 1393.json │ ├── 1394.json │ ├── 1395.json │ ├── 1396.json │ ├── 1397.json │ ├── 1398.json │ ├── 1399.json │ ├── 14.json │ ├── 1400.json │ ├── 1401.json │ ├── 1402.json │ ├── 1403.json │ ├── 1404.json │ ├── 1405.json │ ├── 1406.json │ ├── 1407.json │ ├── 1408.json │ ├── 1409.json │ ├── 1410.json │ ├── 1411.json │ ├── 1412.json │ ├── 1413.json │ ├── 1415.json │ ├── 1416.json │ ├── 1417.json │ ├── 1418.json │ ├── 1419.json │ ├── 142.json │ ├── 1420.json │ ├── 1421.json │ ├── 1422.json │ ├── 1423.json │ ├── 1424.json │ ├── 1425.json │ ├── 1426.json │ ├── 1427.json │ ├── 1428.json │ ├── 1429.json │ ├── 15.json │ ├── 16.json │ ├── 17.json │ ├── 18.json │ ├── 189.json │ ├── 190.json │ ├── 191.json │ ├── 192.json │ ├── 193.json │ ├── 194.json │ ├── 195.json │ ├── 196.json │ ├── 197.json │ ├── 198.json │ ├── 199.json │ ├── 2.json │ ├── 20.json │ ├── 200.json │ ├── 201.json │ ├── 207.json │ ├── 208.json │ ├── 209.json │ ├── 21.json │ ├── 210.json │ ├── 211.json │ ├── 213.json │ ├── 214.json │ ├── 215.json │ ├── 216.json │ ├── 217.json │ ├── 218.json │ ├── 219.json │ ├── 22.json │ ├── 220.json │ ├── 221.json │ ├── 222.json │ ├── 223.json │ ├── 224.json │ ├── 225.json │ ├── 226.json │ ├── 227.json │ ├── 228.json │ ├── 229.json │ ├── 23.json │ ├── 230.json │ ├── 231.json │ ├── 232.json │ ├── 233.json │ ├── 234.json │ ├── 235.json │ ├── 236.json │ ├── 237.json │ ├── 238.json │ ├── 239.json │ ├── 24.json │ ├── 240.json │ ├── 241.json │ ├── 243.json │ ├── 244.json │ ├── 245.json │ ├── 246.json │ ├── 247.json │ ├── 248.json │ ├── 249.json │ ├── 25.json │ ├── 251.json │ ├── 253.json │ ├── 254.json │ ├── 255.json │ ├── 256.json │ ├── 257.json │ ├── 258.json │ ├── 259.json │ ├── 260.json │ ├── 261.json │ ├── 262.json │ ├── 263.json │ ├── 264.json │ ├── 265.json │ ├── 267.json │ ├── 268.json │ ├── 269.json │ ├── 27.json │ ├── 270.json │ ├── 271.json │ ├── 273.json │ ├── 274.json │ ├── 275.json │ ├── 276.json │ ├── 277.json │ ├── 278.json │ ├── 279.json │ ├── 280.json │ ├── 281.json │ ├── 282.json │ ├── 283.json │ ├── 284.json │ ├── 285.json │ ├── 287.json │ ├── 288.json │ ├── 289.json │ ├── 29.json │ ├── 290.json │ ├── 291.json │ ├── 292.json │ ├── 293.json │ ├── 294.json │ ├── 295.json │ ├── 296.json │ ├── 298.json │ ├── 299.json │ ├── 3.json │ ├── 30.json │ ├── 300.json │ ├── 304.json │ ├── 305.json │ ├── 306.json │ ├── 307.json │ ├── 308.json │ ├── 31.json │ ├── 311.json │ ├── 318.json │ ├── 32.json │ ├── 324.json │ ├── 325.json │ ├── 327.json │ ├── 328.json │ ├── 33.json │ ├── 330.json │ ├── 331.json │ ├── 332.json │ ├── 333.json │ ├── 334.json │ ├── 335.json │ ├── 339.json │ ├── 34.json │ ├── 340.json │ ├── 341.json │ ├── 342.json │ ├── 343.json │ ├── 344.json │ ├── 346.json │ ├── 347.json │ ├── 348.json │ ├── 349.json │ ├── 35.json │ ├── 350.json │ ├── 351.json │ ├── 352.json │ ├── 353.json │ ├── 354.json │ ├── 355.json │ ├── 356.json │ ├── 357.json │ ├── 358.json │ ├── 359.json │ ├── 36.json │ ├── 360.json │ ├── 361.json │ ├── 362.json │ ├── 363.json │ ├── 364.json │ ├── 365.json │ ├── 366.json │ ├── 367.json │ ├── 368.json │ ├── 369.json │ ├── 37.json │ ├── 370.json │ ├── 371.json │ ├── 372.json │ ├── 373.json │ ├── 374.json │ ├── 375.json │ ├── 376.json │ ├── 377.json │ ├── 378.json │ ├── 379.json │ ├── 38.json │ ├── 380.json │ ├── 381.json │ ├── 382.json │ ├── 383.json │ ├── 384.json │ ├── 385.json │ ├── 386.json │ ├── 387.json │ ├── 388.json │ ├── 389.json │ ├── 39.json │ ├── 391.json │ ├── 392.json │ ├── 393.json │ ├── 394.json │ ├── 395.json │ ├── 396.json │ ├── 397.json │ ├── 398.json │ ├── 399.json │ ├── 4.json │ ├── 40.json │ ├── 400.json │ ├── 401.json │ ├── 402.json │ ├── 403.json │ ├── 404.json │ ├── 405.json │ ├── 406.json │ ├── 407.json │ ├── 41.json │ ├── 410.json │ ├── 411.json │ ├── 412.json │ ├── 414.json │ ├── 415.json │ ├── 416.json │ ├── 417.json │ ├── 42.json │ ├── 43.json │ ├── 44.json │ ├── 444.json │ ├── 445.json │ ├── 446.json │ ├── 447.json │ ├── 448.json │ ├── 449.json │ ├── 45.json │ ├── 450.json │ ├── 451.json │ ├── 452.json │ ├── 453.json │ ├── 454.json │ ├── 455.json │ ├── 456.json │ ├── 457.json │ ├── 458.json │ ├── 459.json │ ├── 46.json │ ├── 460.json │ ├── 461.json │ ├── 462.json │ ├── 463.json │ ├── 464.json │ ├── 465.json │ ├── 466.json │ ├── 467.json │ ├── 468.json │ ├── 469.json │ ├── 47.json │ ├── 470.json │ ├── 471.json │ ├── 472.json │ ├── 473.json │ ├── 474.json │ ├── 475.json │ ├── 476.json │ ├── 477.json │ ├── 478.json │ ├── 479.json │ ├── 48.json │ ├── 480.json │ ├── 481.json │ ├── 482.json │ ├── 483.json │ ├── 484.json │ ├── 485.json │ ├── 486.json │ ├── 487.json │ ├── 488.json │ ├── 489.json │ ├── 490.json │ ├── 491.json │ ├── 492.json │ ├── 493.json │ ├── 494.json │ ├── 495.json │ ├── 496.json │ ├── 497.json │ ├── 498.json │ ├── 499.json │ ├── 5.json │ ├── 500.json │ ├── 501.json │ ├── 502.json │ ├── 503.json │ ├── 504.json │ ├── 505.json │ ├── 506.json │ ├── 507.json │ ├── 508.json │ ├── 509.json │ ├── 51.json │ ├── 510.json │ ├── 511.json │ ├── 512.json │ ├── 513.json │ ├── 514.json │ ├── 515.json │ ├── 516.json │ ├── 517.json │ ├── 518.json │ ├── 519.json │ ├── 52.json │ ├── 520.json │ ├── 521.json │ ├── 522.json │ ├── 523.json │ ├── 524.json │ ├── 525.json │ ├── 526.json │ ├── 527.json │ ├── 528.json │ ├── 529.json │ ├── 53.json │ ├── 530.json │ ├── 531.json │ ├── 532.json │ ├── 533.json │ ├── 534.json │ ├── 535.json │ ├── 536.json │ ├── 537.json │ ├── 538.json │ ├── 539.json │ ├── 54.json │ ├── 540.json │ ├── 541.json │ ├── 542.json │ ├── 543.json │ ├── 544.json │ ├── 545.json │ ├── 546.json │ ├── 547.json │ ├── 549.json │ ├── 550.json │ ├── 551.json │ ├── 552.json │ ├── 553.json │ ├── 554.json │ ├── 555.json │ ├── 556.json │ ├── 557.json │ ├── 558.json │ ├── 559.json │ ├── 56.json │ ├── 560.json │ ├── 561.json │ ├── 562.json │ ├── 563.json │ ├── 564.json │ ├── 565.json │ ├── 566.json │ ├── 567.json │ ├── 568.json │ ├── 569.json │ ├── 57.json │ ├── 570.json │ ├── 571.json │ ├── 572.json │ ├── 573.json │ ├── 574.json │ ├── 575.json │ ├── 576.json │ ├── 577.json │ ├── 578.json │ ├── 579.json │ ├── 580.json │ ├── 581.json │ ├── 582.json │ ├── 583.json │ ├── 584.json │ ├── 585.json │ ├── 586.json │ ├── 587.json │ ├── 588.json │ ├── 589.json │ ├── 59.json │ ├── 590.json │ ├── 591.json │ ├── 592.json │ ├── 593.json │ ├── 594.json │ ├── 595.json │ ├── 596.json │ ├── 597.json │ ├── 598.json │ ├── 599.json │ ├── 6.json │ ├── 60.json │ ├── 600.json │ ├── 601.json │ ├── 602.json │ ├── 603.json │ ├── 604.json │ ├── 605.json │ ├── 606.json │ ├── 607.json │ ├── 608.json │ ├── 609.json │ ├── 61.json │ ├── 610.json │ ├── 611.json │ ├── 612.json │ ├── 613.json │ ├── 614.json │ ├── 615.json │ ├── 616.json │ ├── 617.json │ ├── 618.json │ ├── 619.json │ ├── 62.json │ ├── 620.json │ ├── 621.json │ ├── 622.json │ ├── 623.json │ ├── 624.json │ ├── 625.json │ ├── 626.json │ ├── 627.json │ ├── 628.json │ ├── 629.json │ ├── 63.json │ ├── 630.json │ ├── 631.json │ ├── 632.json │ ├── 633.json │ ├── 634.json │ ├── 635.json │ ├── 636.json │ ├── 637.json │ ├── 638.json │ ├── 639.json │ ├── 64.json │ ├── 640.json │ ├── 641.json │ ├── 642.json │ ├── 643.json │ ├── 644.json │ ├── 645.json │ ├── 646.json │ ├── 647.json │ ├── 648.json │ ├── 649.json │ ├── 65.json │ ├── 650.json │ ├── 651.json │ ├── 652.json │ ├── 653.json │ ├── 654.json │ ├── 655.json │ ├── 656.json │ ├── 657.json │ ├── 658.json │ ├── 659.json │ ├── 66.json │ ├── 660.json │ ├── 661.json │ ├── 662.json │ ├── 663.json │ ├── 664.json │ ├── 665.json │ ├── 666.json │ ├── 667.json │ ├── 668.json │ ├── 669.json │ ├── 67.json │ ├── 670.json │ ├── 671.json │ ├── 672.json │ ├── 673.json │ ├── 674.json │ ├── 675.json │ ├── 676.json │ ├── 677.json │ ├── 678.json │ ├── 679.json │ ├── 68.json │ ├── 680.json │ ├── 681.json │ ├── 682.json │ ├── 683.json │ ├── 684.json │ ├── 685.json │ ├── 686.json │ ├── 687.json │ ├── 688.json │ ├── 689.json │ ├── 69.json │ ├── 690.json │ ├── 691.json │ ├── 692.json │ ├── 693.json │ ├── 694.json │ ├── 695.json │ ├── 696.json │ ├── 697.json │ ├── 698.json │ ├── 699.json │ ├── 7.json │ ├── 70.json │ ├── 701.json │ ├── 702.json │ ├── 703.json │ ├── 705.json │ ├── 706.json │ ├── 707.json │ ├── 708.json │ ├── 709.json │ ├── 71.json │ ├── 710.json │ ├── 711.json │ ├── 712.json │ ├── 713.json │ ├── 714.json │ ├── 715.json │ ├── 716.json │ ├── 717.json │ ├── 719.json │ ├── 72.json │ ├── 720.json │ ├── 721.json │ ├── 722.json │ ├── 723.json │ ├── 724.json │ ├── 725.json │ ├── 726.json │ ├── 727.json │ ├── 728.json │ ├── 729.json │ ├── 730.json │ ├── 731.json │ ├── 732.json │ ├── 733.json │ ├── 734.json │ ├── 735.json │ ├── 736.json │ ├── 737.json │ ├── 738.json │ ├── 739.json │ ├── 74.json │ ├── 740.json │ ├── 741.json │ ├── 742.json │ ├── 743.json │ ├── 744.json │ ├── 745.json │ ├── 746.json │ ├── 747.json │ ├── 748.json │ ├── 749.json │ ├── 75.json │ ├── 750.json │ ├── 752.json │ ├── 753.json │ ├── 754.json │ ├── 755.json │ ├── 756.json │ ├── 757.json │ ├── 759.json │ ├── 76.json │ ├── 760.json │ ├── 761.json │ ├── 762.json │ ├── 763.json │ ├── 764.json │ ├── 765.json │ ├── 766.json │ ├── 767.json │ ├── 768.json │ ├── 769.json │ ├── 77.json │ ├── 770.json │ ├── 771.json │ ├── 772.json │ ├── 773.json │ ├── 774.json │ ├── 775.json │ ├── 776.json │ ├── 777.json │ ├── 778.json │ ├── 779.json │ ├── 78.json │ ├── 780.json │ ├── 781.json │ ├── 782.json │ ├── 783.json │ ├── 784.json │ ├── 785.json │ ├── 788.json │ ├── 789.json │ ├── 79.json │ ├── 790.json │ ├── 791.json │ ├── 792.json │ ├── 793.json │ ├── 794.json │ ├── 795.json │ ├── 796.json │ ├── 797.json │ ├── 798.json │ ├── 8.json │ ├── 80.json │ ├── 802.json │ ├── 803.json │ ├── 804.json │ ├── 805.json │ ├── 806.json │ ├── 807.json │ ├── 808.json │ ├── 809.json │ ├── 81.json │ ├── 810.json │ ├── 811.json │ ├── 812.json │ ├── 813.json │ ├── 814.json │ ├── 817.json │ ├── 818.json │ ├── 819.json │ ├── 82.json │ ├── 820.json │ ├── 821.json │ ├── 822.json │ ├── 823.json │ ├── 824.json │ ├── 825.json │ ├── 826.json │ ├── 827.json │ ├── 828.json │ ├── 829.json │ ├── 830.json │ ├── 831.json │ ├── 832.json │ ├── 833.json │ ├── 834.json │ ├── 835.json │ ├── 836.json │ ├── 837.json │ ├── 838.json │ ├── 839.json │ ├── 84.json │ ├── 840.json │ ├── 841.json │ ├── 842.json │ ├── 843.json │ ├── 844.json │ ├── 845.json │ ├── 846.json │ ├── 847.json │ ├── 848.json │ ├── 850.json │ ├── 851.json │ ├── 852.json │ ├── 854.json │ ├── 855.json │ ├── 856.json │ ├── 857.json │ ├── 858.json │ ├── 859.json │ ├── 86.json │ ├── 860.json │ ├── 861.json │ ├── 862.json │ ├── 863.json │ ├── 864.json │ ├── 865.json │ ├── 866.json │ ├── 867.json │ ├── 868.json │ ├── 869.json │ ├── 87.json │ ├── 870.json │ ├── 871.json │ ├── 872.json │ ├── 873.json │ ├── 874.json │ ├── 875.json │ ├── 876.json │ ├── 877.json │ ├── 878.json │ ├── 881.json │ ├── 882.json │ ├── 884.json │ ├── 888.json │ ├── 889.json │ ├── 890.json │ ├── 891.json │ ├── 892.json │ ├── 893.json │ ├── 894.json │ ├── 895.json │ ├── 896.json │ ├── 898.json │ ├── 9.json │ ├── 900.json │ ├── 901.json │ ├── 917.json │ ├── 918.json │ ├── 919.json │ ├── 920.json │ ├── 921.json │ ├── 922.json │ ├── 923.json │ ├── 924.json │ ├── 925.json │ ├── 927.json │ ├── 928.json │ ├── 929.json │ ├── 930.json │ ├── 931.json │ ├── 932.json │ ├── 933.json │ ├── 934.json │ ├── 935.json │ ├── 936.json │ ├── 938.json │ ├── 939.json │ ├── 940.json │ ├── 941.json │ ├── 942.json │ ├── 943.json │ ├── 944.json │ ├── 945.json │ ├── 946.json │ ├── 947.json │ ├── 948.json │ ├── 95.json │ ├── 950.json │ ├── 953.json │ ├── 954.json │ ├── 955.json │ ├── 956.json │ ├── 957.json │ ├── 963.json │ ├── 964.json │ ├── 965.json │ ├── 967.json │ ├── 976.json │ ├── 979.json │ ├── 980.json │ ├── 982.json │ ├── 986.json │ ├── 989.json │ ├── 990.json │ ├── 991.json │ ├── 992.json │ ├── 993.json │ ├── 994.json │ ├── 996.json │ ├── 997.json │ ├── 998.json │ ├── 999.json │ └── InclusionRules.csv ├── doc │ └── HowToUsePhenotypeLibraryRPackage.pdf └── sql │ └── sql_server │ ├── 10.sql │ ├── 100.sql │ ├── 1000.sql │ ├── 1001.sql │ ├── 1002.sql │ ├── 1003.sql │ ├── 1004.sql │ ├── 1005.sql │ ├── 1006.sql │ ├── 1007.sql │ ├── 1009.sql │ ├── 1010.sql │ ├── 1011.sql │ ├── 1012.sql │ ├── 1013.sql │ ├── 1016.sql │ ├── 1017.sql │ ├── 1018.sql │ ├── 1019.sql │ ├── 1020.sql │ ├── 1021.sql │ ├── 1022.sql │ ├── 1023.sql │ ├── 1024.sql │ ├── 1025.sql │ ├── 1026.sql │ ├── 1027.sql │ ├── 1028.sql │ ├── 1029.sql │ ├── 1030.sql │ ├── 1031.sql │ ├── 1032.sql │ ├── 1033.sql │ ├── 1034.sql │ ├── 1035.sql │ ├── 1036.sql │ ├── 1037.sql │ ├── 1038.sql │ ├── 1039.sql │ ├── 1040.sql │ ├── 1041.sql │ ├── 1042.sql │ ├── 1043.sql │ ├── 1044.sql │ ├── 1045.sql │ ├── 1046.sql │ ├── 1047.sql │ ├── 1048.sql │ ├── 1049.sql │ ├── 1050.sql │ ├── 1051.sql │ ├── 1052.sql │ ├── 1053.sql │ ├── 1054.sql │ ├── 1055.sql │ ├── 1056.sql │ ├── 1057.sql │ ├── 1058.sql │ ├── 1059.sql │ ├── 1060.sql │ ├── 1061.sql │ ├── 1062.sql │ ├── 1063.sql │ ├── 1064.sql │ ├── 1065.sql │ ├── 1066.sql │ ├── 1067.sql │ ├── 1068.sql │ ├── 1069.sql │ ├── 1070.sql │ ├── 1071.sql │ ├── 1072.sql │ ├── 1073.sql │ ├── 1074.sql │ ├── 1075.sql │ ├── 1076.sql │ ├── 1077.sql │ ├── 1078.sql │ ├── 1079.sql │ ├── 1080.sql │ ├── 1081.sql │ ├── 1082.sql │ ├── 1083.sql │ ├── 1084.sql │ ├── 1085.sql │ ├── 1086.sql │ ├── 1087.sql │ ├── 1088.sql │ ├── 1089.sql │ ├── 1090.sql │ ├── 1091.sql │ ├── 1093.sql │ ├── 1094.sql │ ├── 1095.sql │ ├── 1097.sql │ ├── 1098.sql │ ├── 1099.sql │ ├── 11.sql │ ├── 1100.sql │ ├── 1101.sql │ ├── 1102.sql │ ├── 1103.sql │ ├── 1104.sql │ ├── 1105.sql │ ├── 1106.sql │ ├── 1150.sql │ ├── 1151.sql │ ├── 1152.sql │ ├── 1153.sql │ ├── 1154.sql │ ├── 1155.sql │ ├── 1156.sql │ ├── 1157.sql │ ├── 1158.sql │ ├── 1159.sql │ ├── 1160.sql │ ├── 1161.sql │ ├── 1162.sql │ ├── 1163.sql │ ├── 1164.sql │ ├── 1165.sql │ ├── 1166.sql │ ├── 1167.sql │ ├── 1168.sql │ ├── 1169.sql │ ├── 1170.sql │ ├── 1171.sql │ ├── 1172.sql │ ├── 1173.sql │ ├── 1174.sql │ ├── 1175.sql │ ├── 1176.sql │ ├── 1177.sql │ ├── 1178.sql │ ├── 1179.sql │ ├── 1180.sql │ ├── 1181.sql │ ├── 1182.sql │ ├── 1183.sql │ ├── 1184.sql │ ├── 1185.sql │ ├── 1186.sql │ ├── 1187.sql │ ├── 1188.sql │ ├── 1189.sql │ ├── 119.sql │ ├── 1190.sql │ ├── 1191.sql │ ├── 1192.sql │ ├── 1193.sql │ ├── 1194.sql │ ├── 1195.sql │ ├── 1196.sql │ ├── 1197.sql │ ├── 1198.sql │ ├── 1199.sql │ ├── 12.sql │ ├── 1200.sql │ ├── 1201.sql │ ├── 1202.sql │ ├── 1203.sql │ ├── 1204.sql │ ├── 1205.sql │ ├── 1206.sql │ ├── 1207.sql │ ├── 1208.sql │ ├── 1209.sql │ ├── 1210.sql │ ├── 1211.sql │ ├── 1212.sql │ ├── 1213.sql │ ├── 1214.sql │ ├── 1215.sql │ ├── 1217.sql │ ├── 1219.sql │ ├── 1220.sql │ ├── 1221.sql │ ├── 1222.sql │ ├── 1223.sql │ ├── 1224.sql │ ├── 1225.sql │ ├── 1226.sql │ ├── 1227.sql │ ├── 1228.sql │ ├── 1229.sql │ ├── 123.sql │ ├── 1231.sql │ ├── 1244.sql │ ├── 1261.sql │ ├── 1262.sql │ ├── 1263.sql │ ├── 1264.sql │ ├── 1265.sql │ ├── 1266.sql │ ├── 1267.sql │ ├── 1268.sql │ ├── 1269.sql │ ├── 1270.sql │ ├── 1271.sql │ ├── 1272.sql │ ├── 1273.sql │ ├── 1274.sql │ ├── 1275.sql │ ├── 1276.sql │ ├── 1277.sql │ ├── 1278.sql │ ├── 1279.sql │ ├── 1280.sql │ ├── 1281.sql │ ├── 1282.sql │ ├── 1283.sql │ ├── 1284.sql │ ├── 1285.sql │ ├── 1286.sql │ ├── 1287.sql │ ├── 1288.sql │ ├── 1289.sql │ ├── 1290.sql │ ├── 1291.sql │ ├── 1292.sql │ ├── 1293.sql │ ├── 1294.sql │ ├── 1295.sql │ ├── 1296.sql │ ├── 1297.sql │ ├── 1298.sql │ ├── 1299.sql │ ├── 13.sql │ ├── 1300.sql │ ├── 1301.sql │ ├── 1303.sql │ ├── 1304.sql │ ├── 1305.sql │ ├── 1306.sql │ ├── 1307.sql │ ├── 1308.sql │ ├── 1309.sql │ ├── 1310.sql │ ├── 1311.sql │ ├── 1312.sql │ ├── 1313.sql │ ├── 1314.sql │ ├── 1315.sql │ ├── 1316.sql │ ├── 1317.sql │ ├── 1318.sql │ ├── 1329.sql │ ├── 1330.sql │ ├── 1331.sql │ ├── 1332.sql │ ├── 1333.sql │ ├── 1334.sql │ ├── 1336.sql │ ├── 1337.sql │ ├── 1338.sql │ ├── 1339.sql │ ├── 134.sql │ ├── 1340.sql │ ├── 1341.sql │ ├── 1342.sql │ ├── 1343.sql │ ├── 1344.sql │ ├── 1345.sql │ ├── 1346.sql │ ├── 1347.sql │ ├── 1348.sql │ ├── 1349.sql │ ├── 1350.sql │ ├── 1351.sql │ ├── 1352.sql │ ├── 1353.sql │ ├── 1354.sql │ ├── 1355.sql │ ├── 1356.sql │ ├── 1357.sql │ ├── 1358.sql │ ├── 1359.sql │ ├── 1360.sql │ ├── 1361.sql │ ├── 1362.sql │ ├── 1363.sql │ ├── 1364.sql │ ├── 1365.sql │ ├── 1366.sql │ ├── 1367.sql │ ├── 1368.sql │ ├── 1369.sql │ ├── 1370.sql │ ├── 1371.sql │ ├── 1372.sql │ ├── 1373.sql │ ├── 1374.sql │ ├── 1375.sql │ ├── 1376.sql │ ├── 1377.sql │ ├── 1378.sql │ ├── 1379.sql │ ├── 1380.sql │ ├── 1381.sql │ ├── 1382.sql │ ├── 1383.sql │ ├── 1384.sql │ ├── 1385.sql │ ├── 1386.sql │ ├── 1387.sql │ ├── 1388.sql │ ├── 1389.sql │ ├── 1390.sql │ ├── 1391.sql │ ├── 1392.sql │ ├── 1393.sql │ ├── 1394.sql │ ├── 1395.sql │ ├── 1396.sql │ ├── 1397.sql │ ├── 1398.sql │ ├── 1399.sql │ ├── 14.sql │ ├── 1400.sql │ ├── 1401.sql │ ├── 1402.sql │ ├── 1403.sql │ ├── 1404.sql │ ├── 1405.sql │ ├── 1406.sql │ ├── 1407.sql │ ├── 1408.sql │ ├── 1409.sql │ ├── 1410.sql │ ├── 1411.sql │ ├── 1412.sql │ ├── 1413.sql │ ├── 1415.sql │ ├── 1416.sql │ ├── 1417.sql │ ├── 1418.sql │ ├── 1419.sql │ ├── 142.sql │ ├── 1420.sql │ ├── 1421.sql │ ├── 1422.sql │ ├── 1423.sql │ ├── 1424.sql │ ├── 1425.sql │ ├── 1426.sql │ ├── 1427.sql │ ├── 1428.sql │ ├── 1429.sql │ ├── 15.sql │ ├── 16.sql │ ├── 17.sql │ ├── 18.sql │ ├── 189.sql │ ├── 190.sql │ ├── 191.sql │ ├── 192.sql │ ├── 193.sql │ ├── 194.sql │ ├── 195.sql │ ├── 196.sql │ ├── 197.sql │ ├── 198.sql │ ├── 199.sql │ ├── 2.sql │ ├── 20.sql │ ├── 200.sql │ ├── 201.sql │ ├── 207.sql │ ├── 208.sql │ ├── 209.sql │ ├── 21.sql │ ├── 210.sql │ ├── 211.sql │ ├── 213.sql │ ├── 214.sql │ ├── 215.sql │ ├── 216.sql │ ├── 217.sql │ ├── 218.sql │ ├── 219.sql │ ├── 22.sql │ ├── 220.sql │ ├── 221.sql │ ├── 222.sql │ ├── 223.sql │ ├── 224.sql │ ├── 225.sql │ ├── 226.sql │ ├── 227.sql │ ├── 228.sql │ ├── 229.sql │ ├── 23.sql │ ├── 230.sql │ ├── 231.sql │ ├── 232.sql │ ├── 233.sql │ ├── 234.sql │ ├── 235.sql │ ├── 236.sql │ ├── 237.sql │ ├── 238.sql │ ├── 239.sql │ ├── 24.sql │ ├── 240.sql │ ├── 241.sql │ ├── 243.sql │ ├── 244.sql │ ├── 245.sql │ ├── 246.sql │ ├── 247.sql │ ├── 248.sql │ ├── 249.sql │ ├── 25.sql │ ├── 251.sql │ ├── 253.sql │ ├── 254.sql │ ├── 255.sql │ ├── 256.sql │ ├── 257.sql │ ├── 258.sql │ ├── 259.sql │ ├── 260.sql │ ├── 261.sql │ ├── 262.sql │ ├── 263.sql │ ├── 264.sql │ ├── 265.sql │ ├── 267.sql │ ├── 268.sql │ ├── 269.sql │ ├── 27.sql │ ├── 270.sql │ ├── 271.sql │ ├── 273.sql │ ├── 274.sql │ ├── 275.sql │ ├── 276.sql │ ├── 277.sql │ ├── 278.sql │ ├── 279.sql │ ├── 280.sql │ ├── 281.sql │ ├── 282.sql │ ├── 283.sql │ ├── 284.sql │ ├── 285.sql │ ├── 287.sql │ ├── 288.sql │ ├── 289.sql │ ├── 29.sql │ ├── 290.sql │ ├── 291.sql │ ├── 292.sql │ ├── 293.sql │ ├── 294.sql │ ├── 295.sql │ ├── 296.sql │ ├── 298.sql │ ├── 299.sql │ ├── 3.sql │ ├── 30.sql │ ├── 300.sql │ ├── 304.sql │ ├── 305.sql │ ├── 306.sql │ ├── 307.sql │ ├── 308.sql │ ├── 31.sql │ ├── 311.sql │ ├── 318.sql │ ├── 32.sql │ ├── 324.sql │ ├── 325.sql │ ├── 327.sql │ ├── 328.sql │ ├── 33.sql │ ├── 330.sql │ ├── 331.sql │ ├── 332.sql │ ├── 333.sql │ ├── 334.sql │ ├── 335.sql │ ├── 339.sql │ ├── 34.sql │ ├── 340.sql │ ├── 341.sql │ ├── 342.sql │ ├── 343.sql │ ├── 344.sql │ ├── 346.sql │ ├── 347.sql │ ├── 348.sql │ ├── 349.sql │ ├── 35.sql │ ├── 350.sql │ ├── 351.sql │ ├── 352.sql │ ├── 353.sql │ ├── 354.sql │ ├── 355.sql │ ├── 356.sql │ ├── 357.sql │ ├── 358.sql │ ├── 359.sql │ ├── 36.sql │ ├── 360.sql │ ├── 361.sql │ ├── 362.sql │ ├── 363.sql │ ├── 364.sql │ ├── 365.sql │ ├── 366.sql │ ├── 367.sql │ ├── 368.sql │ ├── 369.sql │ ├── 37.sql │ ├── 370.sql │ ├── 371.sql │ ├── 372.sql │ ├── 373.sql │ ├── 374.sql │ ├── 375.sql │ ├── 376.sql │ ├── 377.sql │ ├── 378.sql │ ├── 379.sql │ ├── 38.sql │ ├── 380.sql │ ├── 381.sql │ ├── 382.sql │ ├── 383.sql │ ├── 384.sql │ ├── 385.sql │ ├── 386.sql │ ├── 387.sql │ ├── 388.sql │ ├── 389.sql │ ├── 39.sql │ ├── 391.sql │ ├── 392.sql │ ├── 393.sql │ ├── 394.sql │ ├── 395.sql │ ├── 396.sql │ ├── 397.sql │ ├── 398.sql │ ├── 399.sql │ ├── 4.sql │ ├── 40.sql │ ├── 400.sql │ ├── 401.sql │ ├── 402.sql │ ├── 403.sql │ ├── 404.sql │ ├── 405.sql │ ├── 406.sql │ ├── 407.sql │ ├── 41.sql │ ├── 410.sql │ ├── 411.sql │ ├── 412.sql │ ├── 414.sql │ ├── 415.sql │ ├── 416.sql │ ├── 417.sql │ ├── 42.sql │ ├── 43.sql │ ├── 44.sql │ ├── 444.sql │ ├── 445.sql │ ├── 446.sql │ ├── 447.sql │ ├── 448.sql │ ├── 449.sql │ ├── 45.sql │ ├── 450.sql │ ├── 451.sql │ ├── 452.sql │ ├── 453.sql │ ├── 454.sql │ ├── 455.sql │ ├── 456.sql │ ├── 457.sql │ ├── 458.sql │ ├── 459.sql │ ├── 46.sql │ ├── 460.sql │ ├── 461.sql │ ├── 462.sql │ ├── 463.sql │ ├── 464.sql │ ├── 465.sql │ ├── 466.sql │ ├── 467.sql │ ├── 468.sql │ ├── 469.sql │ ├── 47.sql │ ├── 470.sql │ ├── 471.sql │ ├── 472.sql │ ├── 473.sql │ ├── 474.sql │ ├── 475.sql │ ├── 476.sql │ ├── 477.sql │ ├── 478.sql │ ├── 479.sql │ ├── 48.sql │ ├── 480.sql │ ├── 481.sql │ ├── 482.sql │ ├── 483.sql │ ├── 484.sql │ ├── 485.sql │ ├── 486.sql │ ├── 487.sql │ ├── 488.sql │ ├── 489.sql │ ├── 490.sql │ ├── 491.sql │ ├── 492.sql │ ├── 493.sql │ ├── 494.sql │ ├── 495.sql │ ├── 496.sql │ ├── 497.sql │ ├── 498.sql │ ├── 499.sql │ ├── 5.sql │ ├── 500.sql │ ├── 501.sql │ ├── 502.sql │ ├── 503.sql │ ├── 504.sql │ ├── 505.sql │ ├── 506.sql │ ├── 507.sql │ ├── 508.sql │ ├── 509.sql │ ├── 51.sql │ ├── 510.sql │ ├── 511.sql │ ├── 512.sql │ ├── 513.sql │ ├── 514.sql │ ├── 515.sql │ ├── 516.sql │ ├── 517.sql │ ├── 518.sql │ ├── 519.sql │ ├── 52.sql │ ├── 520.sql │ ├── 521.sql │ ├── 522.sql │ ├── 523.sql │ ├── 524.sql │ ├── 525.sql │ ├── 526.sql │ ├── 527.sql │ ├── 528.sql │ ├── 529.sql │ ├── 53.sql │ ├── 530.sql │ ├── 531.sql │ ├── 532.sql │ ├── 533.sql │ ├── 534.sql │ ├── 535.sql │ ├── 536.sql │ ├── 537.sql │ ├── 538.sql │ ├── 539.sql │ ├── 54.sql │ ├── 540.sql │ ├── 541.sql │ ├── 542.sql │ ├── 543.sql │ ├── 544.sql │ ├── 545.sql │ ├── 546.sql │ ├── 547.sql │ ├── 549.sql │ ├── 550.sql │ ├── 551.sql │ ├── 552.sql │ ├── 553.sql │ ├── 554.sql │ ├── 555.sql │ ├── 556.sql │ ├── 557.sql │ ├── 558.sql │ ├── 559.sql │ ├── 56.sql │ ├── 560.sql │ ├── 561.sql │ ├── 562.sql │ ├── 563.sql │ ├── 564.sql │ ├── 565.sql │ ├── 566.sql │ ├── 567.sql │ ├── 568.sql │ ├── 569.sql │ ├── 57.sql │ ├── 570.sql │ ├── 571.sql │ ├── 572.sql │ ├── 573.sql │ ├── 574.sql │ ├── 575.sql │ ├── 576.sql │ ├── 577.sql │ ├── 578.sql │ ├── 579.sql │ ├── 580.sql │ ├── 581.sql │ ├── 582.sql │ ├── 583.sql │ ├── 584.sql │ ├── 585.sql │ ├── 586.sql │ ├── 587.sql │ ├── 588.sql │ ├── 589.sql │ ├── 59.sql │ ├── 590.sql │ ├── 591.sql │ ├── 592.sql │ ├── 593.sql │ ├── 594.sql │ ├── 595.sql │ ├── 596.sql │ ├── 597.sql │ ├── 598.sql │ ├── 599.sql │ ├── 6.sql │ ├── 60.sql │ ├── 600.sql │ ├── 601.sql │ ├── 602.sql │ ├── 603.sql │ ├── 604.sql │ ├── 605.sql │ ├── 606.sql │ ├── 607.sql │ ├── 608.sql │ ├── 609.sql │ ├── 61.sql │ ├── 610.sql │ ├── 611.sql │ ├── 612.sql │ ├── 613.sql │ ├── 614.sql │ ├── 615.sql │ ├── 616.sql │ ├── 617.sql │ ├── 618.sql │ ├── 619.sql │ ├── 62.sql │ ├── 620.sql │ ├── 621.sql │ ├── 622.sql │ ├── 623.sql │ ├── 624.sql │ ├── 625.sql │ ├── 626.sql │ ├── 627.sql │ ├── 628.sql │ ├── 629.sql │ ├── 63.sql │ ├── 630.sql │ ├── 631.sql │ ├── 632.sql │ ├── 633.sql │ ├── 634.sql │ ├── 635.sql │ ├── 636.sql │ ├── 637.sql │ ├── 638.sql │ ├── 639.sql │ ├── 64.sql │ ├── 640.sql │ ├── 641.sql │ ├── 642.sql │ ├── 643.sql │ ├── 644.sql │ ├── 645.sql │ ├── 646.sql │ ├── 647.sql │ ├── 648.sql │ ├── 649.sql │ ├── 65.sql │ ├── 650.sql │ ├── 651.sql │ ├── 652.sql │ ├── 653.sql │ ├── 654.sql │ ├── 655.sql │ ├── 656.sql │ ├── 657.sql │ ├── 658.sql │ ├── 659.sql │ ├── 66.sql │ ├── 660.sql │ ├── 661.sql │ ├── 662.sql │ ├── 663.sql │ ├── 664.sql │ ├── 665.sql │ ├── 666.sql │ ├── 667.sql │ ├── 668.sql │ ├── 669.sql │ ├── 67.sql │ ├── 670.sql │ ├── 671.sql │ ├── 672.sql │ ├── 673.sql │ ├── 674.sql │ ├── 675.sql │ ├── 676.sql │ ├── 677.sql │ ├── 678.sql │ ├── 679.sql │ ├── 68.sql │ ├── 680.sql │ ├── 681.sql │ ├── 682.sql │ ├── 683.sql │ ├── 684.sql │ ├── 685.sql │ ├── 686.sql │ ├── 687.sql │ ├── 688.sql │ ├── 689.sql │ ├── 69.sql │ ├── 690.sql │ ├── 691.sql │ ├── 692.sql │ ├── 693.sql │ ├── 694.sql │ ├── 695.sql │ ├── 696.sql │ ├── 697.sql │ ├── 698.sql │ ├── 699.sql │ ├── 7.sql │ ├── 70.sql │ ├── 701.sql │ ├── 702.sql │ ├── 703.sql │ ├── 705.sql │ ├── 706.sql │ ├── 707.sql │ ├── 708.sql │ ├── 709.sql │ ├── 71.sql │ ├── 710.sql │ ├── 711.sql │ ├── 712.sql │ ├── 713.sql │ ├── 714.sql │ ├── 715.sql │ ├── 716.sql │ ├── 717.sql │ ├── 719.sql │ ├── 72.sql │ ├── 720.sql │ ├── 721.sql │ ├── 722.sql │ ├── 723.sql │ ├── 724.sql │ ├── 725.sql │ ├── 726.sql │ ├── 727.sql │ ├── 728.sql │ ├── 729.sql │ ├── 730.sql │ ├── 731.sql │ ├── 732.sql │ ├── 733.sql │ ├── 734.sql │ ├── 735.sql │ ├── 736.sql │ ├── 737.sql │ ├── 738.sql │ ├── 739.sql │ ├── 74.sql │ ├── 740.sql │ ├── 741.sql │ ├── 742.sql │ ├── 743.sql │ ├── 744.sql │ ├── 745.sql │ ├── 746.sql │ ├── 747.sql │ ├── 748.sql │ ├── 749.sql │ ├── 75.sql │ ├── 750.sql │ ├── 752.sql │ ├── 753.sql │ ├── 754.sql │ ├── 755.sql │ ├── 756.sql │ ├── 757.sql │ ├── 759.sql │ ├── 76.sql │ ├── 760.sql │ ├── 761.sql │ ├── 762.sql │ ├── 763.sql │ ├── 764.sql │ ├── 765.sql │ ├── 766.sql │ ├── 767.sql │ ├── 768.sql │ ├── 769.sql │ ├── 77.sql │ ├── 770.sql │ ├── 771.sql │ ├── 772.sql │ ├── 773.sql │ ├── 774.sql │ ├── 775.sql │ ├── 776.sql │ ├── 777.sql │ ├── 778.sql │ ├── 779.sql │ ├── 78.sql │ ├── 780.sql │ ├── 781.sql │ ├── 782.sql │ ├── 783.sql │ ├── 784.sql │ ├── 785.sql │ ├── 788.sql │ ├── 789.sql │ ├── 79.sql │ ├── 790.sql │ ├── 791.sql │ ├── 792.sql │ ├── 793.sql │ ├── 794.sql │ ├── 795.sql │ ├── 796.sql │ ├── 797.sql │ ├── 798.sql │ ├── 8.sql │ ├── 80.sql │ ├── 802.sql │ ├── 803.sql │ ├── 804.sql │ ├── 805.sql │ ├── 806.sql │ ├── 807.sql │ ├── 808.sql │ ├── 809.sql │ ├── 81.sql │ ├── 810.sql │ ├── 811.sql │ ├── 812.sql │ ├── 813.sql │ ├── 814.sql │ ├── 817.sql │ ├── 818.sql │ ├── 819.sql │ ├── 82.sql │ ├── 820.sql │ ├── 821.sql │ ├── 822.sql │ ├── 823.sql │ ├── 824.sql │ ├── 825.sql │ ├── 826.sql │ ├── 827.sql │ ├── 828.sql │ ├── 829.sql │ ├── 830.sql │ ├── 831.sql │ ├── 832.sql │ ├── 833.sql │ ├── 834.sql │ ├── 835.sql │ ├── 836.sql │ ├── 837.sql │ ├── 838.sql │ ├── 839.sql │ ├── 84.sql │ ├── 840.sql │ ├── 841.sql │ ├── 842.sql │ ├── 843.sql │ ├── 844.sql │ ├── 845.sql │ ├── 846.sql │ ├── 847.sql │ ├── 848.sql │ ├── 850.sql │ ├── 851.sql │ ├── 852.sql │ ├── 854.sql │ ├── 855.sql │ ├── 856.sql │ ├── 857.sql │ ├── 858.sql │ ├── 859.sql │ ├── 86.sql │ ├── 860.sql │ ├── 861.sql │ ├── 862.sql │ ├── 863.sql │ ├── 864.sql │ ├── 865.sql │ ├── 866.sql │ ├── 867.sql │ ├── 868.sql │ ├── 869.sql │ ├── 87.sql │ ├── 870.sql │ ├── 871.sql │ ├── 872.sql │ ├── 873.sql │ ├── 874.sql │ ├── 875.sql │ ├── 876.sql │ ├── 877.sql │ ├── 878.sql │ ├── 881.sql │ ├── 882.sql │ ├── 884.sql │ ├── 888.sql │ ├── 889.sql │ ├── 890.sql │ ├── 891.sql │ ├── 892.sql │ ├── 893.sql │ ├── 894.sql │ ├── 895.sql │ ├── 896.sql │ ├── 898.sql │ ├── 9.sql │ ├── 900.sql │ ├── 901.sql │ ├── 917.sql │ ├── 918.sql │ ├── 919.sql │ ├── 920.sql │ ├── 921.sql │ ├── 922.sql │ ├── 923.sql │ ├── 924.sql │ ├── 925.sql │ ├── 927.sql │ ├── 928.sql │ ├── 929.sql │ ├── 930.sql │ ├── 931.sql │ ├── 932.sql │ ├── 933.sql │ ├── 934.sql │ ├── 935.sql │ ├── 936.sql │ ├── 938.sql │ ├── 939.sql │ ├── 940.sql │ ├── 941.sql │ ├── 942.sql │ ├── 943.sql │ ├── 944.sql │ ├── 945.sql │ ├── 946.sql │ ├── 947.sql │ ├── 948.sql │ ├── 95.sql │ ├── 950.sql │ ├── 953.sql │ ├── 954.sql │ ├── 955.sql │ ├── 956.sql │ ├── 957.sql │ ├── 963.sql │ ├── 964.sql │ ├── 965.sql │ ├── 967.sql │ ├── 976.sql │ ├── 979.sql │ ├── 980.sql │ ├── 982.sql │ ├── 986.sql │ ├── 989.sql │ ├── 990.sql │ ├── 991.sql │ ├── 992.sql │ ├── 993.sql │ ├── 994.sql │ ├── 996.sql │ ├── 997.sql │ ├── 998.sql │ ├── 999.sql │ └── CreateCohortTable.sql ├── man ├── PhenotypeLibrary-package.Rd ├── getPhenotypeLog.Rd ├── getPlCohortDefinitionSet.Rd ├── getPlConceptDefinitionSet.Rd └── listPhenotypes.Rd ├── phenotypeLibrary.Rproj ├── tests ├── testthat.R └── testthat │ └── test-PhenotypeLibrary.R └── vignettes ├── CohortDefinitionSubmissionRequirements.Rmd ├── CohortDefinitionsInOhdsiPhenotypeLibrary.Rmd ├── ConceptSetDefinitionsInOhdsiPhenotypeLibrary.Rmd ├── GuidanceOnClinicalDescriptionForConditionPhenotypes.Rmd ├── GuidanceOnCohortDefinitionSetRObject.Rmd ├── GuidanceOnLiteratureReview.Rmd ├── GuidanceOnPerformingPeerReview.Rmd ├── GuidanceOnWritingAnEvaluationReport.Rmd ├── GuidanceOnWritingCohortDefinitionLogicDescription.Rmd ├── HowToUsePhenotypeLibraryRPackage.Rmd ├── ReservedWordsWithSpecialMeaningToPhenotypers.Rmd ├── SubmittedCohortDefinitions.Rmd ├── ValidityChecksForCohortDefinitions.Rmd └── ValidityChecksForCohortDefinitions.pdf /.Rbuildignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/OHDSI/PhenotypeLibrary/HEAD/.Rbuildignore 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