├── .flake8 ├── .github ├── ISSUE_TEMPLATE │ ├── bug-report-template.md │ ├── development-issue-template.md │ └── feature-request-template.md ├── pull_request_template.md └── workflows │ ├── apply-formatting.yml │ ├── build-docs.yml │ ├── format-check.yml │ ├── javascript-format.yml │ ├── javascript-lint.yml │ ├── jupyternotebook-lint.yml │ ├── shell-format.yml │ ├── unit-tests.yml │ └── yaml-format.yml ├── .gitignore ├── .gitlab-ci.yml ├── .gitlab ├── build │ ├── build_core_image.yml │ ├── build_foxx_image.yml │ ├── build_gcs_base_image.yml │ ├── build_gcs_image.yml │ ├── build_repo_image.yml │ ├── build_ws_image.yml │ ├── force_build_core_image.yml │ ├── force_build_foxx_image.yml │ ├── force_build_gcs_base_image.yml │ ├── force_build_gcs_image.yml │ ├── force_build_repo_image.yml │ └── force_build_ws_image.yml ├── build_ci_infrastructure.yml ├── common.yml ├── end_to_end.yml ├── infrastructure.yml ├── skip_ci_infrastructure.yml ├── stage_build.yml ├── stage_build_base.yml ├── stage_clear_cache.yml ├── stage_image_check.yml ├── stage_pipeline_serialize.yml ├── stage_provision_client.yml ├── stage_test.yml └── stage_unit.yml ├── .gitmodules ├── .prettierrc.json ├── CHANGELOG.md ├── CMakeLists.txt ├── LICENSE.md ├── README.md ├── cmake ├── Boost.cmake ├── CURL.cmake ├── GSSAPI.cmake ├── GlobusCommon.cmake ├── JSON.cmake ├── JSONSchema.cmake ├── OpenSSL.cmake ├── Protobuf.cmake ├── Utils.cmake ├── Version.cmake ├── Web.cmake ├── ZeroMQ.cmake ├── Zlib.cmake ├── curl_version.cpp ├── sodium_version.cpp └── zlib_version.cpp ├── common ├── CMakeLists.txt ├── include │ └── common │ │ ├── CommunicatorFactory.hpp │ │ ├── CredentialFactory.hpp │ │ ├── DynaLog.hpp │ │ ├── ErrorCodes.hpp │ │ ├── GSSAPI_Utils.hpp │ │ ├── IAuthenticationManager.hpp │ │ ├── ICommunicator.hpp │ │ ├── ICredentials.hpp │ │ ├── IMessage.hpp │ │ ├── IMessageMapper.hpp │ │ ├── IOperator.hpp │ │ ├── IServer.hpp │ │ ├── ISocket.hpp │ │ ├── KeyGenerator.hpp │ │ ├── MessageBuffer.hpp │ │ ├── MessageFactory.hpp │ │ ├── OperatorFactory.hpp │ │ ├── OperatorTypes.hpp │ │ ├── ProtoBufMap.hpp │ │ ├── ProtocolTypes.hpp │ │ ├── ServerFactory.hpp │ │ ├── SmartTokenizer.hpp │ │ ├── SocketFactory.hpp │ │ ├── SocketOptions.hpp │ │ ├── TraceException.hpp │ │ ├── Util.hpp │ │ ├── Version.hpp.in │ │ ├── fpconv.h │ │ ├── libjson.hpp │ │ └── powers.h ├── proto │ └── common │ │ ├── CMakeLists.txt │ │ ├── SDMS.proto │ │ ├── SDMS_Anon.proto │ │ ├── SDMS_Auth.proto │ │ └── Version.proto.in ├── source │ ├── Buffer.hpp │ ├── CommunicatorFactory.cpp │ ├── CredentialFactory.cpp │ ├── DynaLog.cpp │ ├── Frame.cpp │ ├── Frame.hpp │ ├── KeyGenerator.cpp │ ├── MessageFactory.cpp │ ├── OperatorFactory.cpp │ ├── ProtoBufFactory.cpp │ ├── ProtoBufFactory.hpp │ ├── ProtoBufMap.cpp │ ├── ServerFactory.cpp │ ├── SocketFactory.cpp │ ├── SocketOptions.cpp │ ├── Util.cpp │ ├── communicators │ │ ├── ZeroMQCommunicator.cpp │ │ ├── ZeroMQCommunicator.hpp │ │ ├── ZeroMQCommunicatorSecure.cpp │ │ └── ZeroMQCommunicatorSecure.hpp │ ├── credentials │ │ ├── ZeroMQSocketCredentials.cpp │ │ └── ZeroMQSocketCredentials.hpp │ ├── fpconv.cpp │ ├── messages │ │ ├── GoogleProtoMessage.cpp │ │ └── GoogleProtoMessage.hpp │ ├── operators │ │ ├── AuthenticationOperator.cpp │ │ ├── AuthenticationOperator.hpp │ │ ├── RouterBookKeepingOperator.cpp │ │ └── RouterBookKeepingOperator.hpp │ ├── servers │ │ ├── Proxy.cpp │ │ ├── Proxy.hpp │ │ ├── ProxyBasicZMQ.cpp │ │ └── ProxyBasicZMQ.hpp │ ├── sockets │ │ ├── ZeroMQSocket.cpp │ │ └── ZeroMQSocket.hpp │ └── support │ │ └── zeromq │ │ ├── Context.hpp │ │ ├── SocketTranslator.cpp │ │ └── SocketTranslator.hpp └── tests │ ├── CMakeLists.txt │ ├── security │ ├── CMakeLists.txt │ └── tcp_secure │ │ ├── CMakeLists.txt │ │ ├── README.md │ │ ├── runtests.cmake │ │ ├── test_tcp_insecure.sh │ │ ├── test_tcp_secure.sh │ │ ├── test_tcp_secure_client.cpp │ │ └── test_tcp_secure_server.cpp │ └── unit │ ├── CMakeLists.txt │ ├── test_Buffer.cpp │ ├── test_CommunicatorFactory.cpp │ ├── test_DynaLog.cpp │ ├── test_Frame.cpp │ ├── test_MessageFactory.cpp │ ├── test_OperatorFactory.cpp │ ├── test_ProtoBufFactory.cpp │ ├── test_ProtoBufMap.cpp │ ├── test_Proxy.cpp │ ├── test_ProxyBasicZMQ.cpp │ ├── test_SocketFactory.cpp │ ├── test_SocketOptions.cpp │ └── test_Value.cpp ├── compose ├── README.md ├── all │ ├── build_images_for_compose.sh │ ├── cleanup_globus_files.sh │ ├── compose.yml │ ├── generate_env.sh │ ├── generate_globus_files.sh │ └── globus-connect-server.log ├── metadata │ ├── build_metadata_images_for_compose.sh │ ├── compose.yml │ ├── generate_build_args.sh │ └── generate_env.sh └── repo │ ├── build_repo_images_for_compose.sh │ ├── cleanup_globus_files.sh │ ├── compose.yml │ ├── generate_env.sh │ └── generate_globus_files.sh ├── config └── gsi-authz.conf ├── core ├── CMakeLists.txt ├── database │ ├── CMakeLists.txt │ ├── README.md │ ├── backup │ │ ├── datafed-backup-cron │ │ └── datafed-backup.sh │ ├── foxx │ │ ├── README.md │ │ ├── api │ │ │ ├── .eslintrc.json │ │ │ ├── acl_router.js │ │ │ ├── admin_router.js │ │ │ ├── authz.js │ │ │ ├── authz_router.js │ │ │ ├── coll_router.js │ │ │ ├── config_router.js │ │ │ ├── data_router.js │ │ │ ├── group_router.js │ │ │ ├── lib │ │ │ │ └── user_token.js │ │ │ ├── metrics_router.js │ │ │ ├── models │ │ │ │ ├── DataFedOAuthToken.js │ │ │ │ ├── globus_collection.js │ │ │ │ ├── globus_token.js │ │ │ │ └── user.js │ │ │ ├── note_router.js │ │ │ ├── posix_path.js │ │ │ ├── process.js │ │ │ ├── proj_router.js │ │ │ ├── query_router.js │ │ │ ├── record.js │ │ │ ├── repo.js │ │ │ ├── repo_router.js │ │ │ ├── schema_router.js │ │ │ ├── support.js │ │ │ ├── tag_router.js │ │ │ ├── task_router.js │ │ │ ├── tasks.js │ │ │ ├── topic_router.js │ │ │ ├── user_router.js │ │ │ └── version_router.js.in │ │ ├── db_clear.js │ │ ├── db_create.js │ │ ├── db_migrate_0_10.js │ │ ├── index.js │ │ ├── manifest.json.in │ │ ├── passwd.file │ │ └── tests │ │ │ ├── authz.test.js │ │ │ ├── authz_router.test.js │ │ │ ├── globus_collection_fixture.js │ │ │ ├── globus_collection_model.test.js │ │ │ ├── globus_token_fixture.js │ │ │ ├── globus_token_model.test.js │ │ │ ├── path.test.js │ │ │ ├── record.test.js │ │ │ ├── repo.test.js │ │ │ ├── support.test.js │ │ │ ├── user_fixture.js │ │ │ ├── user_model.test.js │ │ │ ├── user_router.test.js │ │ │ ├── user_token.test.js │ │ │ └── version.test.js │ └── tests │ │ ├── test_fixture_setup.sh │ │ ├── test_foxx.sh │ │ ├── test_setup.sh │ │ └── test_teardown.sh ├── docker │ ├── Dockerfile │ └── entrypoint.sh └── server │ ├── AuthMap.cpp │ ├── AuthMap.hpp │ ├── AuthenticationManager.cpp │ ├── AuthenticationManager.hpp │ ├── CMakeLists.txt │ ├── ClientWorker.cpp │ ├── ClientWorker.hpp │ ├── Condition.cpp │ ├── Condition.hpp │ ├── Config.cpp │ ├── Config.hpp │ ├── CoreServer.cpp │ ├── CoreServer.hpp │ ├── DatabaseAPI.cpp │ ├── DatabaseAPI.hpp │ ├── GlobusAPI.cpp │ ├── GlobusAPI.hpp │ ├── ICoreServer.hpp │ ├── ITaskMgr.hpp │ ├── ITaskWorker.hpp │ ├── PublicKeyTypes.hpp │ ├── TaskMgr.cpp │ ├── TaskMgr.hpp │ ├── TaskWorker.cpp │ ├── TaskWorker.hpp │ ├── Version.hpp.in │ ├── main.cpp │ └── tests │ ├── CMakeLists.txt │ └── unit │ ├── CMakeLists.txt │ ├── test_AuthMap.cpp │ └── test_AuthenticationManager.cpp ├── doc_source ├── CMakeLists.txt ├── README.md ├── index.rst └── source │ ├── _static │ ├── css │ │ └── custom.css │ ├── data_lifecycle.png │ ├── globus_endpoints │ │ ├── finding_endpoint_01.png │ │ ├── finding_endpoint_02.png │ │ └── finding_endpoint_03.png │ ├── papers_presentations │ │ ├── 2019_CSCI.pdf │ │ ├── 2019_CSCI_slides.pdf │ │ ├── 2020_SMC.pdf │ │ ├── 2020_SMC_slides.pdf │ │ └── DataFed_General_Presentation.pptx │ ├── python_high_level │ │ ├── provenance.png │ │ ├── search_01.png │ │ ├── search_02.png │ │ └── search_03.png │ ├── simplified_architecture.png │ └── system_components.png │ ├── admin │ ├── install_bare_metal.rst │ └── install_docker.rst │ ├── conf.py │ ├── dev │ ├── design.rst │ ├── project.rst │ ├── release.rst │ ├── roadmap.rst │ └── testing.rst │ ├── index.rst │ ├── system │ ├── getting_started.rst │ ├── introduction.rst │ ├── overview.rst │ ├── papers.rst │ └── usecases.rst │ └── user │ ├── cli │ ├── guide.rst │ ├── header.rst │ └── reference.rst │ ├── client │ └── install.rst │ ├── python │ ├── high_level_guide.rst │ └── notebooks.rst │ └── web │ └── portal.rst ├── docker ├── Dockerfile.dependencies ├── Dockerfile.foxx ├── Dockerfile.runtime ├── README.md └── entrypoint_foxx.sh ├── docs ├── _generated │ └── cli_python_cmd_ref.html ├── _images │ ├── data_lifecycle.png │ ├── finding_endpoint_01.png │ ├── finding_endpoint_02.png │ ├── finding_endpoint_03.png │ ├── provenance.png │ ├── search_01.png │ ├── search_02.png │ ├── search_03.png │ ├── simplified_architecture.png │ └── system_components.png ├── _sources │ ├── _generated │ │ └── cli_python_cmd_ref.rst.txt │ ├── admin │ │ └── general.rst.txt │ ├── autoapi │ │ ├── datafed │ │ │ ├── CLI │ │ │ │ └── index.rst.txt │ │ │ ├── CommandLib │ │ │ │ └── index.rst.txt │ │ │ ├── Config │ │ │ │ └── index.rst.txt │ │ │ ├── Connection │ │ │ │ └── index.rst.txt │ │ │ ├── MessageLib │ │ │ │ └── index.rst.txt │ │ │ ├── SDMS_Anon_pb2 │ │ │ │ └── index.rst.txt │ │ │ ├── SDMS_Auth_pb2 │ │ │ │ └── index.rst.txt │ │ │ ├── SDMS_pb2 │ │ │ │ └── index.rst.txt │ │ │ ├── VERSION │ │ │ │ └── index.rst.txt │ │ │ ├── Version_pb2 │ │ │ │ └── index.rst.txt │ │ │ └── index.rst.txt │ │ └── index.rst.txt │ ├── dev │ │ ├── design.rst.txt │ │ ├── project.rst.txt │ │ ├── release.rst.txt │ │ └── roadmap.rst.txt │ ├── index.rst.txt │ ├── system │ │ ├── getting_started.rst.txt │ │ ├── introduction.rst.txt │ │ ├── overview.rst.txt │ │ ├── papers.rst.txt │ │ └── usecases.rst.txt │ └── user │ │ ├── cli │ │ ├── guide.rst.txt │ │ ├── header.rst.txt │ │ └── reference.rst.txt │ │ ├── client │ │ └── install.rst.txt │ │ ├── python │ │ ├── high_level_guide.rst.txt │ │ └── notebooks.rst.txt │ │ └── web │ │ └── portal.rst.txt ├── _static │ ├── basic.css │ ├── css │ │ ├── badge_only.css │ │ ├── custom.css │ │ ├── fonts │ │ │ ├── Roboto-Slab-Bold.woff │ │ │ ├── Roboto-Slab-Bold.woff2 │ │ │ ├── Roboto-Slab-Regular.woff │ │ │ ├── Roboto-Slab-Regular.woff2 │ │ │ ├── fontawesome-webfont.eot │ │ │ ├── fontawesome-webfont.svg │ │ │ ├── fontawesome-webfont.ttf │ │ │ ├── fontawesome-webfont.woff │ │ │ ├── fontawesome-webfont.woff2 │ │ │ ├── lato-bold-italic.woff │ │ │ ├── lato-bold-italic.woff2 │ │ │ ├── lato-bold.woff │ │ │ ├── lato-bold.woff2 │ │ │ ├── lato-normal-italic.woff │ │ │ ├── lato-normal-italic.woff2 │ │ │ ├── lato-normal.woff │ │ │ └── lato-normal.woff2 │ │ └── theme.css │ ├── data_lifecycle.png │ ├── doctools.js │ ├── documentation_options.js │ ├── file.png │ ├── globus_endpoints │ │ ├── finding_endpoint_01.png │ │ ├── finding_endpoint_02.png │ │ └── finding_endpoint_03.png │ ├── graphviz.css │ ├── js │ │ ├── badge_only.js │ │ ├── html5shiv-printshiv.min.js │ │ ├── html5shiv.min.js │ │ └── theme.js │ ├── language_data.js │ ├── minus.png │ ├── papers_presentations │ │ ├── 2019_CSCI.pdf │ │ ├── 2019_CSCI_slides.pdf │ │ ├── 2020_SMC.pdf │ │ ├── 2020_SMC_slides.pdf │ │ └── DataFed_General_Presentation.pptx │ ├── plus.png │ ├── pygments.css │ ├── python_high_level │ │ ├── provenance.png │ │ ├── search_01.png │ │ ├── search_02.png │ │ └── search_03.png │ ├── searchtools.js │ ├── simplified_architecture.png │ ├── sphinx_highlight.js │ └── system_components.png ├── admin │ └── general.html ├── autoapi │ ├── datafed │ │ ├── CLI │ │ │ └── index.html │ │ ├── CommandLib │ │ │ └── index.html │ │ ├── Config │ │ │ └── index.html │ │ ├── Connection │ │ │ └── index.html │ │ ├── MessageLib │ │ │ └── index.html │ │ ├── SDMS_Anon_pb2 │ │ │ └── index.html │ │ ├── SDMS_Auth_pb2 │ │ │ └── index.html │ │ ├── SDMS_pb2 │ │ │ └── index.html │ │ ├── VERSION │ │ │ └── index.html │ │ ├── Version_pb2 │ │ │ └── index.html │ │ └── index.html │ └── index.html ├── dev │ ├── design.html │ ├── project.html │ ├── release.html │ └── roadmap.html ├── genindex.html ├── index.html ├── objects.inv ├── py-modindex.html ├── search.html ├── searchindex.js ├── system │ ├── getting_started.html │ ├── introduction.html │ ├── overview.html │ ├── papers.html │ └── usecases.html └── user │ ├── cli │ ├── guide.html │ ├── header.html │ └── reference.html │ ├── client │ └── install.html │ ├── python │ ├── high_level_guide.html │ └── notebooks.html │ └── web │ └── portal.html ├── docs_other ├── README.md └── dev │ └── design │ ├── Auth.proto Summary.xlsx │ ├── CLI Commands Summary.xlsx │ ├── SDMS Overview and Design.docx │ ├── catalog.txt │ ├── data_life_cycle.odg │ ├── graph │ ├── graph_schema.html │ └── graph_schema2.html │ ├── schema.jpg │ ├── schema.odg │ ├── sdms_architecture_v2.odg │ ├── sdms_architecture_v3.odg │ ├── sdms_spec.odt │ ├── sdms_sys_diagram.jpg │ └── sdms_sys_diagram.odg ├── eslint.config.js ├── facility ├── CMakeLists.txt ├── README.md ├── client │ ├── CMakeLists.txt │ ├── cli │ │ ├── CMakeLists.txt │ │ └── main.cpp │ └── lib │ │ ├── CMakeLists.txt │ │ ├── Client.cpp │ │ ├── Client.hpp │ │ ├── bin2ascii.h │ │ ├── pbjson.cpp │ │ ├── pbjson.hpp │ │ └── test │ │ ├── CMakeLists.txt │ │ └── main.cpp └── server │ ├── CMakeLists.txt │ ├── CentralDatabaseClient.cpp │ ├── CentralDatabaseClient.hpp │ ├── CentralStorage.cpp │ ├── CentralStorage.hpp │ ├── FacilityServer.cpp │ ├── FacilityServer.hpp │ ├── Session.cpp │ ├── Session.hpp │ └── main.cpp ├── jupyter_notebooks ├── .flake8 ├── 0_verify.ipynb ├── 1_Basics.ipynb ├── 1_Basics_with_Solutions.ipynb ├── 2_Data_Records.ipynb ├── 2_Data_Records_with_Solutions.ipynb ├── 3_Data_Transfer.ipynb ├── 3_Data_Transfer_with_Solutions.ipynb ├── 4_Collections_Queries.ipynb ├── 4_Collections_Queries_with_Solutions.ipynb └── 5_Collaborative_Exercise.ipynb ├── pyproject.toml ├── python ├── CMakeLists.txt ├── datafed_pkg │ ├── CMakeLists.txt │ ├── Doxyfile │ ├── README │ ├── datafed │ │ ├── CLI.py │ │ ├── CMakeLists.txt │ │ ├── CommandLib.py │ │ ├── Config.py │ │ ├── Connection.py │ │ ├── MessageLib.py │ │ ├── VERSION.py.in │ │ ├── VersionUtils.py │ │ ├── __init__.py │ │ └── doxygen.cfg │ ├── requirements.txt │ ├── scripts │ │ └── datafed │ ├── setup.py │ └── test │ │ ├── Test_EndToEnd.py │ │ ├── Test_ObjectReturn.py │ │ ├── data_gen.py │ │ └── security.py ├── docker │ ├── Dockerfile.python-client-base.ubuntu │ ├── Dockerfile.python-client.ubuntu │ └── entrypoint.sh └── pyproto_add_msg_idx.py ├── repository ├── CMakeLists.txt ├── docker │ ├── 000-default.conf │ ├── Dockerfile │ ├── Dockerfile.gcs │ ├── entrypoint_authz.sh │ └── entrypoint_repo.sh ├── filesys │ ├── CMakeLists.txt │ └── fusemain.cpp ├── gridftp │ ├── CMakeLists.txt │ └── globus5 │ │ ├── CMakeLists.txt │ │ └── authz │ │ ├── CMakeLists.txt │ │ ├── mock_core │ │ ├── AuthMap.cpp │ │ ├── AuthMap.hpp │ │ ├── AuthenticationManager.cpp │ │ ├── AuthenticationManager.hpp │ │ ├── CMakeLists.txt │ │ ├── ClientWorker.cpp │ │ ├── ClientWorker.hpp │ │ ├── Condition.cpp │ │ ├── Condition.hpp │ │ ├── Config.cpp │ │ ├── Config.hpp │ │ ├── IMockCoreServer.hpp │ │ ├── MockCoreServer.cpp │ │ ├── MockCoreServer.hpp │ │ ├── MockGlobals.cpp │ │ ├── MockGlobals.hpp │ │ ├── PublicKeyTypes.hpp │ │ ├── Version.hpp.in │ │ └── main.cpp │ │ ├── source │ │ ├── AuthzWorker.cpp │ │ ├── AuthzWorker.h │ │ ├── AuthzWorker.hpp │ │ ├── CMakeLists.txt │ │ ├── Config.h │ │ ├── README.md │ │ ├── Version.hpp.in │ │ └── libauthz.c │ │ └── tests │ │ ├── CMakeLists.txt │ │ ├── integration │ │ ├── CMakeLists.txt │ │ └── test_gsi_authz_init.cpp │ │ ├── mock │ │ ├── CMakeLists.txt │ │ ├── mock_start.sh │ │ ├── mock_stop.sh │ │ └── test_getVersion.cpp │ │ └── unit │ │ ├── CMakeLists.txt │ │ ├── test_AuthzWorker.cpp │ │ └── test_getVersion.cpp └── server │ ├── CMakeLists.txt │ ├── Config.hpp │ ├── RepoServer.cpp │ ├── RepoServer.hpp │ ├── RequestWorker.cpp │ ├── RequestWorker.hpp │ ├── Version.hpp.in │ └── main.cpp ├── scripts ├── admin_get_user_emails.sh ├── admin_send_email_notification.sh ├── admin_toggle_user_acccount.sh ├── admin_update_config_message.sh ├── ci_database_health_check.sh ├── ci_generate_pypirc.sh ├── ci_harbor_artifact_count.sh ├── ci_pipeline_serializer.sh ├── ci_pipeline_setup.sh ├── ci_purge_images.sh ├── ci_setup_web_certs.sh ├── clear_db.sh ├── compose_build_images.sh ├── compose_cleanup_globus_files.sh ├── compose_generate_env.sh ├── compose_generate_globus_files.sh ├── container_run_test.sh ├── container_stop.sh ├── dependency_install_functions.sh ├── dependency_versions.sh ├── export_dependency_version.sh ├── generate_authz_config.sh ├── generate_certificate_refresh_script.sh ├── generate_core_config.sh ├── generate_core_service.sh ├── generate_datafed.sh ├── generate_datafed_backup_script.sh ├── generate_gsi-authz_config.sh ├── generate_metadata_container_scripts.sh ├── generate_repo_config.sh ├── generate_repo_container_scripts.sh ├── generate_repo_service.sh ├── generate_ws_config.sh ├── generate_ws_service.sh ├── globus │ ├── __init__.py │ ├── clean_globus.sh │ ├── clean_globus_nodes.py │ ├── create_guest_collection.py │ ├── generate_repo_form.sh │ ├── globus_cleanup.py │ ├── initialize_globus_endpoint.py │ ├── setup_collection_directory.sh │ ├── setup_globus.sh │ ├── tests │ │ └── test_create_guest_collection.py │ └── utils.py ├── install_authz.sh ├── install_authz_dependencies.sh ├── install_client_dependencies.sh ├── install_core.sh ├── install_core_dependencies.sh ├── install_core_service.sh ├── install_dependencies.sh ├── install_docker_dependencies.sh ├── install_docs_dependencies.sh ├── install_end_to_end_test_dependencies.sh ├── install_foxx.sh ├── install_gcs.sh ├── install_lego_and_certificates.sh ├── install_python_client_dependencies.sh ├── install_repo.sh ├── install_repo_dependencies.sh ├── install_repo_service.sh ├── install_ws.sh ├── install_ws_dependencies.sh ├── install_ws_service.sh ├── run_arango_service.sh ├── run_core_service.sh ├── run_repo_service.sh ├── run_ws_service.sh ├── uninstall_all.sh └── utils.sh ├── setup ├── setup_condo.sh ├── test ├── CMakeLists.txt ├── Test_Cases_CLI.xlsx ├── import │ ├── record10.json │ ├── record1_upd.json │ ├── record2.json │ ├── record2_upd.json │ ├── record3.json │ ├── record4.json │ ├── record5.json │ ├── record6.json │ ├── record7.json │ ├── record8.json │ ├── record9.json │ ├── record_oversize.json │ └── records_upd.json └── libjson │ ├── CMakeLists.txt │ └── main.cpp ├── tests └── end-to-end │ ├── CMakeLists.txt │ ├── README.md │ ├── setup.sh │ ├── test_api_alloc.py │ ├── test_api_collection.py │ ├── test_api_context.py │ ├── test_api_endpoint.py │ ├── test_api_record.py │ ├── test_api_repo.py │ ├── test_api_user_login.py │ └── web-UI │ ├── CMakeLists.txt │ ├── auth.setup.js.in │ ├── package-lock.json │ ├── package.json │ ├── playwright.config.js │ └── scripts │ └── testingBasicFunction.spec.js └── web ├── .eslintrc.json ├── datafed-ws.js ├── docker ├── Dockerfile └── entrypoint.sh ├── package.json.in ├── services └── auth │ ├── ConsentHandler.js │ ├── TokenHandler.js │ └── constants.js ├── static ├── .eslintrc.json ├── ace │ ├── ace.js │ ├── ext-beautify.js │ ├── ext-elastic_tabstops_lite.js │ ├── ext-emmet.js │ ├── ext-error_marker.js │ ├── ext-keybinding_menu.js │ ├── ext-language_tools.js │ ├── ext-linking.js │ ├── ext-modelist.js │ ├── ext-options.js │ ├── ext-rtl.js │ ├── ext-searchbox.js │ ├── ext-settings_menu.js │ ├── ext-spellcheck.js │ ├── ext-split.js │ ├── ext-static_highlight.js │ ├── ext-statusbar.js │ ├── ext-textarea.js │ ├── ext-themelist.js │ ├── ext-whitespace.js │ ├── keybinding-emacs.js │ ├── keybinding-vim.js │ ├── mode-json.js │ ├── theme-dark.js │ ├── theme-light.js │ ├── worker-coffee.js │ ├── worker-css.js │ ├── worker-html.js │ ├── worker-javascript.js │ ├── worker-json.js │ ├── worker-lua.js │ ├── worker-php.js │ ├── worker-xml.js │ └── worker-xquery.js ├── api.js ├── components │ ├── endpoint-browse │ │ ├── index.js │ │ └── styles.css │ ├── provenance │ │ ├── assets │ │ │ └── arrow-markers.js │ │ ├── customization_modal.js │ │ ├── panel_graph.js │ │ ├── state.js │ │ ├── styles │ │ │ ├── customization_modal.css │ │ │ ├── graph_styles.css │ │ │ └── theme-variables.css │ │ └── utils.js │ └── transfer │ │ ├── index.js │ │ ├── transfer-dialog-controller.js │ │ ├── transfer-endpoint-manager.js │ │ ├── transfer-templates.js │ │ └── transfer-ui-manager.js ├── dialogs.js ├── dlg_alloc_new_edit.js ├── dlg_annotation.js ├── dlg_coll_new_edit.js ├── dlg_data_new_edit.js ├── dlg_group_edit.js ├── dlg_groups.js ├── dlg_owner_chg_confirm.js ├── dlg_pick_proj.js ├── dlg_pick_topic.js ├── dlg_pick_user.js ├── dlg_proj_new_edit.js ├── dlg_query_builder.js ├── dlg_query_save.js ├── dlg_repo_edit.js ├── dlg_repo_manage.js ├── dlg_schema.js ├── dlg_schema_list.js ├── dlg_set_acls.js ├── dlg_settings.js ├── doi_style.css ├── favicon.png ├── index.js ├── jquery-ui-dark │ ├── datafed.css │ ├── images │ │ ├── ui-bg_glass_40_ffc73d_1x400.png │ │ ├── ui-bg_highlight-hard_20_0972a5_1x100.png │ │ ├── ui-bg_highlight-soft_33_003147_1x100.png │ │ ├── ui-bg_highlight-soft_35_222222_1x100.png │ │ ├── ui-bg_highlight-soft_44_444444_1x100.png │ │ ├── ui-bg_highlight-soft_80_eeeeee_1x100.png │ │ ├── ui-bg_loop_25_000000_21x21.png │ │ ├── ui-icons_222222_256x240.png │ │ ├── ui-icons_4b8e0b_256x240.png │ │ ├── ui-icons_a83300_256x240.png │ │ ├── ui-icons_cccccc_256x240.png │ │ └── ui-icons_ffffff_256x240.png │ └── jquery-ui.css ├── jquery-ui-light │ ├── datafed.css │ ├── images │ │ ├── ui-bg_diagonals-small_40_db4865_40x40.png │ │ ├── ui-bg_diagonals-small_50_93c3cd_40x40.png │ │ ├── ui-bg_diagonals-small_50_ff3853_40x40.png │ │ ├── ui-bg_diagonals-small_75_a0e1cb_40x40.png │ │ ├── ui-bg_diagonals-small_75_ccd232_40x40.png │ │ ├── ui-bg_dots-medium_80_ffff38_4x4.png │ │ ├── ui-bg_dots-small_35_35414f_2x2.png │ │ ├── ui-bg_white-lines_85_f7f7ba_40x100.png │ │ ├── ui-icons_454545_256x240.png │ │ ├── ui-icons_88a206_256x240.png │ │ ├── ui-icons_c02669_256x240.png │ │ ├── ui-icons_e1e463_256x240.png │ │ ├── ui-icons_ffeb33_256x240.png │ │ └── ui-icons_ffffff_256x240.png │ └── jquery-ui.css ├── jquery │ ├── font │ │ ├── jquery-ui.eot │ │ ├── jquery-ui.svg │ │ ├── jquery-ui.ttf │ │ ├── jquery-ui.woff │ │ └── jquery-ui.woff2 │ ├── jquery-ui-1.12.icon-font.min.css │ ├── jquery-ui.js │ ├── jquery.js │ ├── jquery.ui-contextmenu.min.js │ └── jquery.ui-contextmenu.min.js.map ├── js-cookie │ └── js-cookie.js ├── main.js ├── main_browse_tab.js ├── model.js ├── models │ ├── endpoint-model.js │ └── transfer-model.js ├── panel_catalog.js ├── panel_item_info.js ├── panel_search.js ├── project.gif ├── query_builder.css ├── query_builder.js ├── register.js ├── settings.js ├── style.css ├── tag │ ├── tag-it.css │ └── tag-it.js └── util.js ├── test ├── ConsentHandler.js ├── TokenHandler.test.js ├── api.test.js ├── components │ └── provenance │ │ ├── state.test.js │ │ └── utils.test.js ├── endpoint-model.test.js └── util.test.js ├── 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