├── .gitignore ├── DaNN ├── loss.py └── mmd.py ├── LICENSE ├── README.md ├── bulkmodel.py ├── casestudy ├── analysis_criticalgenes.ipynb └── analysis_tarined_anndata.ipynb ├── models.py ├── sampling.py ├── scanpypip ├── compability.py ├── preprocessing.py ├── trajectory.py └── utils.py ├── scmodel.py ├── trainers.py ├── trajectory.py └── utils.py /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/OSU-BMBL/scDEAL/HEAD/.gitignore -------------------------------------------------------------------------------- /DaNN/loss.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/OSU-BMBL/scDEAL/HEAD/DaNN/loss.py -------------------------------------------------------------------------------- /DaNN/mmd.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/OSU-BMBL/scDEAL/HEAD/DaNN/mmd.py -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/OSU-BMBL/scDEAL/HEAD/LICENSE -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/OSU-BMBL/scDEAL/HEAD/README.md -------------------------------------------------------------------------------- /bulkmodel.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/OSU-BMBL/scDEAL/HEAD/bulkmodel.py -------------------------------------------------------------------------------- /casestudy/analysis_criticalgenes.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/OSU-BMBL/scDEAL/HEAD/casestudy/analysis_criticalgenes.ipynb -------------------------------------------------------------------------------- /casestudy/analysis_tarined_anndata.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/OSU-BMBL/scDEAL/HEAD/casestudy/analysis_tarined_anndata.ipynb -------------------------------------------------------------------------------- /models.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/OSU-BMBL/scDEAL/HEAD/models.py -------------------------------------------------------------------------------- /sampling.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/OSU-BMBL/scDEAL/HEAD/sampling.py -------------------------------------------------------------------------------- /scanpypip/compability.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/OSU-BMBL/scDEAL/HEAD/scanpypip/compability.py -------------------------------------------------------------------------------- /scanpypip/preprocessing.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/OSU-BMBL/scDEAL/HEAD/scanpypip/preprocessing.py -------------------------------------------------------------------------------- /scanpypip/trajectory.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/OSU-BMBL/scDEAL/HEAD/scanpypip/trajectory.py -------------------------------------------------------------------------------- /scanpypip/utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/OSU-BMBL/scDEAL/HEAD/scanpypip/utils.py -------------------------------------------------------------------------------- /scmodel.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/OSU-BMBL/scDEAL/HEAD/scmodel.py -------------------------------------------------------------------------------- /trainers.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/OSU-BMBL/scDEAL/HEAD/trainers.py -------------------------------------------------------------------------------- /trajectory.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/OSU-BMBL/scDEAL/HEAD/trajectory.py -------------------------------------------------------------------------------- /utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/OSU-BMBL/scDEAL/HEAD/utils.py --------------------------------------------------------------------------------