├── .gitignore ├── Dockerfile ├── LICENSE ├── Makefile ├── README.md ├── after.py ├── barcodeprocesser.py ├── bubbledetector.py ├── bubbleprocesser.py ├── circledetector.py ├── debubble.py ├── editdistance ├── _editdistance.cpp └── _editdistance.h ├── fastq.py ├── preprocesser.py ├── qcreporter.py ├── qualitycontrol.py ├── report_sample ├── R1-prefilter-content.png ├── R1-prefilter-discontinuity.png ├── R1-prefilter-gc-curve.png ├── R1-prefilter-quality.png ├── R1-prefilter-strand-bias.png ├── after.json ├── filter-stat.png └── overlap.png ├── testdata ├── R1.fq.gz └── R2.fq.gz └── util.py /.gitignore: -------------------------------------------------------------------------------- 1 | *.pyc 2 | .DS_Store 3 | libed.so 4 | -------------------------------------------------------------------------------- /Dockerfile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/OpenGene/AfterQC/HEAD/Dockerfile 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