├── .gitignore ├── LICENSE ├── Makefile ├── README.md └── src ├── bamutil.cpp ├── bamutil.h ├── bed.cpp ├── bed.h ├── cluster.cpp ├── cluster.h ├── cmdline.h ├── common.h ├── fastareader.cpp ├── fastareader.h ├── gencore.cpp ├── gencore.h ├── group.cpp ├── group.h ├── htmlreporter.cpp ├── htmlreporter.h ├── jsonreporter.cpp ├── jsonreporter.h ├── main.cpp ├── options.cpp ├── options.h ├── pair.cpp ├── pair.h ├── reference.cpp ├── reference.h ├── stats.cpp ├── stats.h ├── unittest.cpp ├── unittest.h └── util.h /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/OpenGene/gencore/HEAD/.gitignore -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/OpenGene/gencore/HEAD/LICENSE -------------------------------------------------------------------------------- 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