├── DESCRIPTION ├── LICENSE.md ├── NAMESPACE ├── NEWS.md ├── R ├── classifySex.R ├── estimateBetaParam.R ├── estimateBetaParamsFromCounts.R ├── getTransformedProps.R ├── ggplotColors.R ├── normCounts.R ├── normSca.R ├── plotCellTypeMeanVar.R ├── plotCellTypeProps.R ├── plotCellTypePropsMeanVar.R ├── preprocess.R ├── propeller.R ├── propeller.anova.R ├── propeller.ttest.R ├── speckle-package.R ├── speckle_example_data.R └── sysdata.rda ├── README.md ├── man ├── classifySex.Rd ├── dot-extractSCE.Rd ├── dot-extractSeurat.Rd ├── estimateBetaParam.Rd ├── estimateBetaParamsFromCounts.Rd ├── getTransformedProps.Rd ├── ggplotColors.Rd ├── normCounts.Rd ├── normSca.Rd ├── plotCellTypeMeanVar.Rd ├── plotCellTypeProps.Rd ├── plotCellTypePropsMeanVar.Rd ├── preprocess.Rd ├── propeller.Rd ├── propeller.anova.Rd ├── propeller.ttest.Rd ├── speckle-package.Rd └── speckle_example_data.Rd └── vignettes └── speckle.Rmd /DESCRIPTION: 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