├── polymer.json
├── bower.json
├── CONTRIBUTING.md
├── demo
├── table-index.html
├── index.html
└── test.json
├── README.md
├── LICENSE
├── clinical-table.html
└── clinical-vis.html
/polymer.json:
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1 | {
2 | "lint": {
3 | "rules": [
4 | "polymer-2"
5 | ]
6 | }
7 | }
8 |
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/bower.json:
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1 | {
2 | "name": "clinical-vis",
3 | "description": "Clinical-vis medical record visualization",
4 | "main": "clinical-vis.html",
5 | "dependencies": {
6 | "polymer": "Polymer/polymer#^2.0.0"
7 | },
8 | "devDependencies": {
9 | "iron-demo-helpers": "PolymerElements/iron-demo-helpers#^2.0.0",
10 | "web-component-tester": "Polymer/web-component-tester#^6.0.0",
11 | "webcomponentsjs": "webcomponents/webcomponentsjs#^1.0.0"
12 | },
13 | "resolutions": {
14 | "polymer": "^2.0.0"
15 | }
16 | }
17 |
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/CONTRIBUTING.md:
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1 | # How to Contribute
2 |
3 | We'd love to accept your patches and contributions to this project. There are
4 | just a few small guidelines you need to follow.
5 |
6 | ## Contributor License Agreement
7 |
8 | Contributions to this project must be accompanied by a Contributor License
9 | Agreement. You (or your employer) retain the copyright to your contribution;
10 | this simply gives us permission to use and redistribute your contributions as
11 | part of the project. Head over to to see
12 | your current agreements on file or to sign a new one.
13 |
14 | You generally only need to submit a CLA once, so if you've already submitted one
15 | (even if it was for a different project), you probably don't need to do it
16 | again.
17 |
18 | ## Code reviews
19 |
20 | All submissions, including submissions by project members, require review. We
21 | use GitHub pull requests for this purpose. Consult
22 | [GitHub Help](https://help.github.com/articles/about-pull-requests/) for more
23 | information on using pull requests.
24 |
25 | ## Community Guidelines
26 |
27 | This project follows [Google's Open Source Community
28 | Guidelines](https://opensource.google.com/conduct/).
29 |
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/README.md:
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1 | # ClinicalVis
2 |
3 | ClinicalVis is a medical record visualization that attempts to improve upon the
4 | baseline table-based medical record visualizations.
5 |
6 | See the paper that describes and evaluates the visualization on
7 | [arxiv](https://arxiv.org/abs/1810.05798).
8 |
9 | This project contains two Polymer elements:
10 | * clinical-vis: The updated medical record visualization
11 | * clinical-table: A baseline table-based medical record visualization
12 |
13 | ## Install the Polymer-CLI
14 |
15 | First, make sure you have the
16 | [Polymer CLI](https://www.npmjs.com/package/polymer-cli) installed. Then run
17 | `polymer serve` to serve your element locally.
18 |
19 | ## Viewing demos of the elements
20 |
21 | From this top-level clinical-vis directory:
22 | ```
23 | $ polymer install
24 | $ polymer serve
25 | ```
26 | Then navigate to:
27 | * `http://localhost:8081/components/clinical-vis/demo/index.html` for a demo of
28 | the clinical-vis visualization
29 | * `http://localhost:8081/components/clinical-vis/demo/table-index.html` for a
30 | demo of the baseline clinical-table visualization
31 |
32 | ## Using the elements
33 |
34 | Each of the elements exposes a single bound parameter, 'json', which should be
35 | set to a JSON object containing the patient record to visualize. This is the
36 | expected format of the JSON object:
37 |
38 | Top level key-value pairs:
39 | * 'diagnosis': (string) Admitting diagnosis
40 | * 'dob': (string) Date of birth (YYYY-MM-DD)
41 | * 'ethnicity': (string) Ethnicity
42 | * 'gender': (string) Gender
43 | * 'icu_type': (string) ICU type
44 | * 'notes': (array) List of notes in the medical record, see below.
45 | * 'events': (array) List of events in the medical record, see below.
46 |
47 | Each note in the 'notes' field is an object with the following key-value pairs:
48 | * 'timestamp': (string) Number of seconds since UNIX epoch when the note was
49 | taken
50 | * 'category': (string) Category of the note, such as "Nursing" or "Radiology"
51 | * 'note': (string) Text of the note.
52 |
53 | Each event in the 'events' field is an object describing a measured or observed
54 | value with the following key-value pairs:
55 | * 'timestamp': (string) Number of seconds since UNIX epoch when the event was
56 | recorded
57 | * 'key': (string) Name of the event, such as 'Temperature' or 'Heart Rate'
58 | * 'category': (string) The category of the event, such as 'Vitals' or 'Labs'
59 | * 'value_string': (string) If the event data is a string, such as the the value
60 | 'Clear' for the category 'Lung Sounds', then this field holds the value.
61 | * 'value_num': (number) If the event data is a number, such as the the value
62 | 165 for the category 'Platelets', then this field holds the value.
63 |
64 | ## This is not an official Google product
65 |
--------------------------------------------------------------------------------
/LICENSE:
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/clinical-table.html:
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