├── .github ├── CODEOWNERS └── ISSUE_TEMPLATE │ ├── petab-extensions.md │ └── petab-specification-changes.md ├── .gitignore ├── .pre-commit-config.yaml ├── .readthedocs.yaml ├── .rtd_pip_reqs.txt ├── CITATION.cff ├── CONTRIBUTING.md ├── LICENSE ├── README.md ├── doc ├── Makefile ├── _static │ └── custom.css ├── compile_doc.sh ├── compile_tutorial.sh ├── conf.py ├── development.rst ├── editorial_board.rst ├── how_to_cite.rst ├── index.rst ├── license.rst ├── logo │ ├── LICENSE.md │ ├── PEtab.pdf │ ├── PEtab.png │ ├── PEtab.svg │ ├── PEtab_github.png │ ├── PEtab_github.svg │ └── PEtab_raw.svg ├── make.bat ├── md2rst.py ├── src │ ├── Supported functions.tsv │ ├── Tool support.tsv │ └── update_tables.py ├── v1 │ ├── _static │ │ └── petab_schema_v1.yaml │ ├── documentation_data_format.rst │ ├── gfx │ │ ├── petab_files.pdf │ │ ├── petab_files.png │ │ ├── petab_files.svg │ │ ├── petab_scope_and_files.pdf │ │ ├── petab_scope_and_files.png │ │ └── petab_scope_and_files.svg │ ├── software_support.rst │ └── tutorial │ │ ├── Boehm_JProteomeRes2014.yaml │ │ ├── experimental_conditions.tsv │ │ ├── gfx │ │ ├── copasi_simulation.png │ │ ├── tutorial_data.png │ │ └── tutorial_model.png │ │ ├── measurement_data.tsv │ │ ├── model_Boehm_JProteomeRes2014.xml │ │ ├── observables.tsv │ │ ├── parameters.tsv │ │ ├── tutorial.rst │ │ └── visualization_specification.tsv └── v2 │ ├── _static │ └── petab_schema_v2.yaml │ ├── documentation_data_format.rst │ └── gfx │ ├── petab_files.png │ ├── petab_files.svg │ ├── petab_scope_and_files.pdf │ ├── petab_scope_and_files.png │ ├── petab_scope_and_files.svg │ ├── v2_experiment.png │ └── v2_experiment.svg └── tox.ini /.github/CODEOWNERS: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PEtab-dev/PEtab/HEAD/.github/CODEOWNERS -------------------------------------------------------------------------------- /.github/ISSUE_TEMPLATE/petab-extensions.md: 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