├── .gitignore ├── CHANGELOG ├── CMakeLists.txt ├── External ├── Eigen ├── Eigen-3.1.0-alpha2 │ ├── .hg_archival.txt │ ├── .hgeol │ ├── .hgignore │ ├── .hgtags │ ├── .krazy │ ├── CMakeLists.txt │ ├── COPYING.BSD │ ├── COPYING.GPL │ ├── COPYING.LGPL │ ├── CTestConfig.cmake │ ├── CTestCustom.cmake.in │ ├── Eigen │ │ ├── Array │ │ ├── CMakeLists.txt │ │ ├── Cholesky │ │ ├── CholmodSupport │ │ ├── Core │ │ ├── Dense │ │ ├── Eigen │ │ ├── Eigen2Support │ │ ├── Eigenvalues │ │ ├── Geometry │ │ ├── Householder │ │ ├── IterativeLinearSolvers │ │ ├── Jacobi │ │ ├── LU │ │ ├── LeastSquares │ │ ├── OrderingMethods │ │ ├── PARDISOSupport │ │ ├── QR │ │ ├── QtAlignedMalloc │ │ ├── SVD │ │ ├── Sparse │ │ ├── SparseCholesky │ │ ├── SparseCore │ │ ├── StdDeque │ │ ├── StdList │ │ ├── StdVector │ │ ├── SuperLUSupport │ │ ├── UmfPackSupport │ │ └── src │ │ │ ├── CMakeLists.txt │ │ │ ├── Cholesky │ │ │ ├── CMakeLists.txt │ │ │ ├── LDLT.h │ │ │ ├── LLT.h │ │ │ └── LLT_MKL.h │ │ │ ├── CholmodSupport │ │ │ ├── CMakeLists.txt │ │ │ └── CholmodSupport.h │ │ │ ├── Core │ │ │ ├── Array.h │ │ │ ├── ArrayBase.h │ │ │ ├── ArrayWrapper.h │ │ │ ├── Assign.h │ │ │ ├── Assign_MKL.h │ │ │ ├── BandMatrix.h │ │ │ ├── Block.h │ │ │ ├── BooleanRedux.h │ │ │ ├── CMakeLists.txt │ │ │ ├── CommaInitializer.h │ │ │ ├── CwiseBinaryOp.h │ │ │ ├── CwiseNullaryOp.h │ │ │ ├── CwiseUnaryOp.h │ │ │ ├── CwiseUnaryView.h │ │ │ ├── DenseBase.h │ │ │ ├── DenseCoeffsBase.h │ │ │ ├── DenseStorage.h │ │ │ ├── Diagonal.h │ │ │ ├── DiagonalMatrix.h │ │ │ ├── DiagonalProduct.h │ │ │ ├── Dot.h │ │ │ ├── EigenBase.h │ │ │ ├── Flagged.h │ │ │ ├── ForceAlignedAccess.h │ │ │ ├── Functors.h │ │ │ ├── Fuzzy.h │ │ │ ├── GeneralProduct.h │ │ │ ├── GenericPacketMath.h │ │ │ ├── GlobalFunctions.h │ │ │ ├── IO.h │ │ │ ├── Map.h │ │ │ ├── MapBase.h │ │ │ ├── MathFunctions.h │ │ │ ├── Matrix.h │ │ │ ├── MatrixBase.h │ │ │ ├── NestByValue.h │ │ │ ├── NoAlias.h │ │ │ ├── NumTraits.h │ │ │ ├── PermutationMatrix.h │ │ │ ├── PlainObjectBase.h │ │ │ ├── Product.h │ │ │ ├── ProductBase.h │ │ │ ├── Random.h │ │ │ ├── Redux.h │ │ │ ├── Replicate.h │ │ │ ├── ReturnByValue.h │ │ │ ├── Reverse.h │ │ │ ├── Select.h │ │ │ ├── SelfAdjointView.h │ │ │ ├── SelfCwiseBinaryOp.h │ │ │ ├── SolveTriangular.h │ │ │ ├── StableNorm.h │ │ │ ├── Stride.h │ │ │ ├── Swap.h │ │ │ ├── Transpose.h │ │ │ ├── Transpositions.h │ │ │ ├── TriangularMatrix.h │ │ │ ├── VectorBlock.h │ │ │ ├── VectorwiseOp.h │ │ │ ├── Visitor.h │ │ │ ├── arch │ │ │ │ ├── AltiVec │ │ │ │ │ ├── CMakeLists.txt │ │ │ │ │ ├── Complex.h │ │ │ │ │ └── PacketMath.h │ │ │ │ ├── CMakeLists.txt │ │ │ │ ├── Default │ │ │ │ │ ├── CMakeLists.txt │ │ │ │ │ └── Settings.h │ │ │ │ ├── NEON │ │ │ │ │ ├── CMakeLists.txt │ │ │ │ │ ├── Complex.h │ │ │ │ │ └── PacketMath.h │ │ │ │ └── SSE │ │ │ │ │ ├── CMakeLists.txt │ │ │ │ │ ├── Complex.h │ │ │ │ │ ├── MathFunctions.h │ │ │ │ │ └── PacketMath.h │ │ │ ├── products │ │ │ │ ├── CMakeLists.txt │ │ │ │ ├── CoeffBasedProduct.h │ │ │ │ ├── GeneralBlockPanelKernel.h │ │ │ │ ├── GeneralMatrixMatrix.h │ │ │ │ ├── GeneralMatrixMatrixTriangular.h │ │ │ │ ├── GeneralMatrixMatrixTriangular_MKL.h │ │ │ │ ├── GeneralMatrixMatrix_MKL.h │ │ │ │ ├── GeneralMatrixVector.h │ │ │ │ ├── GeneralMatrixVector_MKL.h │ │ │ │ ├── Parallelizer.h │ │ │ │ ├── SelfadjointMatrixMatrix.h │ │ │ │ ├── SelfadjointMatrixMatrix_MKL.h │ │ │ │ ├── SelfadjointMatrixVector.h │ │ │ │ ├── SelfadjointMatrixVector_MKL.h │ │ │ │ ├── SelfadjointProduct.h │ │ │ │ ├── SelfadjointRank2Update.h │ │ │ │ ├── TriangularMatrixMatrix.h │ │ │ │ ├── TriangularMatrixMatrix_MKL.h │ │ │ │ ├── TriangularMatrixVector.h │ │ │ │ ├── TriangularMatrixVector_MKL.h │ │ │ │ ├── TriangularSolverMatrix.h │ │ │ │ ├── TriangularSolverMatrix_MKL.h │ │ │ │ └── TriangularSolverVector.h │ │ │ └── util │ │ │ │ ├── BlasUtil.h │ │ │ │ ├── CMakeLists.txt │ │ │ │ ├── Constants.h │ │ │ │ ├── DisableStupidWarnings.h │ │ │ │ ├── ForwardDeclarations.h │ │ │ │ ├── MKL_support.h │ │ │ │ ├── Macros.h │ │ │ │ ├── Memory.h │ │ │ │ ├── Meta.h │ │ │ │ ├── ReenableStupidWarnings.h │ │ │ │ ├── StaticAssert.h │ │ │ │ └── XprHelper.h │ │ │ ├── Eigen2Support │ │ │ ├── Block.h │ │ │ ├── CMakeLists.txt │ │ │ ├── Cwise.h │ │ │ ├── CwiseOperators.h │ │ │ ├── Geometry │ │ │ │ ├── AlignedBox.h │ │ │ │ ├── All.h │ │ │ │ ├── AngleAxis.h │ │ │ │ ├── CMakeLists.txt │ │ │ │ ├── Hyperplane.h │ │ │ │ ├── ParametrizedLine.h │ │ │ │ ├── Quaternion.h │ │ │ │ ├── Rotation2D.h │ │ │ │ ├── RotationBase.h │ │ │ │ ├── Scaling.h │ │ │ │ ├── Transform.h │ │ │ │ └── Translation.h │ │ │ ├── LU.h │ │ │ ├── Lazy.h │ │ │ ├── LeastSquares.h │ │ │ ├── Macros.h │ │ │ ├── MathFunctions.h │ │ │ ├── Memory.h │ │ │ ├── Meta.h │ │ │ ├── Minor.h │ │ │ ├── QR.h │ │ │ ├── SVD.h │ │ │ ├── TriangularSolver.h │ │ │ └── VectorBlock.h │ │ │ ├── Eigenvalues │ │ │ ├── CMakeLists.txt │ │ │ ├── ComplexEigenSolver.h │ │ │ ├── ComplexSchur.h │ │ │ ├── ComplexSchur_MKL.h │ │ │ ├── EigenSolver.h │ │ │ ├── EigenvaluesCommon.h │ │ │ ├── GeneralizedSelfAdjointEigenSolver.h │ │ │ ├── HessenbergDecomposition.h │ │ │ ├── MatrixBaseEigenvalues.h │ │ │ ├── RealSchur.h │ │ │ ├── RealSchur_MKL.h │ │ │ ├── SelfAdjointEigenSolver.h │ │ │ ├── SelfAdjointEigenSolver_MKL.h │ │ │ └── Tridiagonalization.h │ │ │ ├── Geometry │ │ │ ├── AlignedBox.h │ │ │ ├── AngleAxis.h │ │ │ ├── CMakeLists.txt │ │ │ ├── EulerAngles.h │ │ │ ├── Homogeneous.h │ │ │ ├── Hyperplane.h │ │ │ ├── OrthoMethods.h │ │ │ ├── ParametrizedLine.h │ │ │ ├── Quaternion.h │ │ │ ├── Rotation2D.h │ │ │ ├── RotationBase.h │ │ │ ├── Scaling.h │ │ │ ├── Transform.h │ │ │ ├── Translation.h │ │ │ ├── Umeyama.h │ │ │ └── arch │ │ │ │ ├── CMakeLists.txt │ │ │ │ └── Geometry_SSE.h │ │ │ ├── Householder │ │ │ ├── BlockHouseholder.h │ │ │ ├── CMakeLists.txt │ │ │ ├── Householder.h │ │ │ └── HouseholderSequence.h │ │ │ ├── IterativeLinearSolvers │ │ │ ├── BasicPreconditioners.h │ │ │ ├── BiCGSTAB.h │ │ │ ├── CMakeLists.txt │ │ │ ├── ConjugateGradient.h │ │ │ └── IterativeSolverBase.h │ │ │ ├── Jacobi │ │ │ ├── CMakeLists.txt │ │ │ └── Jacobi.h │ │ │ ├── LU │ │ │ ├── CMakeLists.txt │ │ │ ├── Determinant.h │ │ │ ├── FullPivLU.h │ │ │ ├── Inverse.h │ │ │ ├── PartialPivLU.h │ │ │ ├── PartialPivLU_MKL.h │ │ │ └── arch │ │ │ │ ├── CMakeLists.txt │ │ │ │ └── Inverse_SSE.h │ │ │ ├── OrderingMethods │ │ │ ├── Amd.h │ │ │ └── CMakeLists.txt │ │ │ ├── PARDISOSupport │ │ │ ├── CMakeLists.txt │ │ │ └── PARDISOSupport.h │ │ │ ├── QR │ │ │ ├── CMakeLists.txt │ │ │ ├── ColPivHouseholderQR.h │ │ │ ├── ColPivHouseholderQR_MKL.h │ │ │ ├── FullPivHouseholderQR.h │ │ │ ├── HouseholderQR.h │ │ │ └── HouseholderQR_MKL.h │ │ │ ├── SVD │ │ │ ├── CMakeLists.txt │ │ │ ├── JacobiSVD.h │ │ │ ├── JacobiSVD_MKL.h │ │ │ └── UpperBidiagonalization.h │ │ │ ├── SparseCholesky │ │ │ ├── CMakeLists.txt │ │ │ └── SimplicialCholesky.h │ │ │ ├── SparseCore │ │ │ ├── AmbiVector.h │ │ │ ├── CMakeLists.txt │ │ │ ├── CompressedStorage.h │ │ │ ├── ConservativeSparseSparseProduct.h │ │ │ ├── CoreIterators.h │ │ │ ├── MappedSparseMatrix.h │ │ │ ├── SparseAssign.h │ │ │ ├── SparseBlock.h │ │ │ ├── SparseCwiseBinaryOp.h │ │ │ ├── SparseCwiseUnaryOp.h │ │ │ ├── SparseDenseProduct.h │ │ │ ├── SparseDiagonalProduct.h │ │ │ ├── SparseDot.h │ │ │ ├── SparseFuzzy.h │ │ │ ├── SparseMatrix.h │ │ │ ├── SparseMatrixBase.h │ │ │ ├── SparseProduct.h │ │ │ ├── SparseRedux.h │ │ │ ├── SparseSelfAdjointView.h │ │ │ ├── SparseSparseProductWithPruning.h │ │ │ ├── SparseTranspose.h │ │ │ ├── SparseTriangularView.h │ │ │ ├── SparseUtil.h │ │ │ ├── SparseVector.h │ │ │ ├── SparseView.h │ │ │ └── TriangularSolver.h │ │ │ ├── StlSupport │ │ │ ├── CMakeLists.txt │ │ │ ├── StdDeque.h │ │ │ ├── StdList.h │ │ │ ├── StdVector.h │ │ │ └── details.h │ │ │ ├── SuperLUSupport │ │ │ ├── CMakeLists.txt │ │ │ └── SuperLUSupport.h │ │ │ ├── UmfPackSupport │ │ │ ├── CMakeLists.txt │ │ │ └── UmfPackSupport.h │ │ │ ├── misc │ │ │ ├── CMakeLists.txt │ │ │ ├── Image.h │ │ │ ├── Kernel.h │ │ │ ├── Solve.h │ │ │ ├── SparseSolve.h │ │ │ └── blas.h │ │ │ └── plugins │ │ │ ├── ArrayCwiseBinaryOps.h │ │ │ ├── ArrayCwiseUnaryOps.h │ │ │ ├── BlockMethods.h │ │ │ ├── CMakeLists.txt │ │ │ ├── CommonCwiseBinaryOps.h │ │ │ ├── CommonCwiseUnaryOps.h │ │ │ ├── MatrixCwiseBinaryOps.h │ │ │ └── MatrixCwiseUnaryOps.h │ ├── INSTALL │ ├── bench │ │ ├── BenchSparseUtil.h │ │ ├── BenchTimer.h │ │ ├── BenchUtil.h │ │ ├── README.txt │ │ ├── basicbench.cxxlist │ │ ├── basicbenchmark.cpp │ │ ├── basicbenchmark.h │ │ ├── benchBlasGemm.cpp │ │ ├── benchCholesky.cpp │ │ ├── benchEigenSolver.cpp │ │ ├── benchFFT.cpp │ │ ├── benchVecAdd.cpp │ │ ├── bench_gemm.cpp │ │ ├── bench_multi_compilers.sh │ │ ├── bench_norm.cpp │ │ ├── bench_reverse.cpp │ │ ├── bench_sum.cpp │ │ ├── bench_unrolling │ │ ├── benchmark.cpp │ │ ├── benchmarkSlice.cpp │ │ ├── benchmarkX.cpp │ │ ├── benchmarkXcwise.cpp │ │ ├── benchmark_suite │ │ ├── btl │ │ │ ├── CMakeLists.txt │ │ │ ├── COPYING │ │ │ ├── README │ │ │ ├── actions │ │ │ │ ├── action_aat_product.hh │ │ │ │ ├── action_ata_product.hh │ │ │ │ ├── action_atv_product.hh │ │ │ │ ├── action_axpby.hh │ │ │ │ ├── action_axpy.hh │ │ │ │ ├── action_cholesky.hh │ │ │ │ ├── action_ger.hh │ │ │ │ ├── action_hessenberg.hh │ │ │ │ ├── action_lu_decomp.hh │ │ │ │ ├── action_lu_solve.hh │ │ │ │ ├── action_matrix_matrix_product.hh │ │ │ │ ├── action_matrix_matrix_product_bis.hh │ │ │ │ ├── action_matrix_vector_product.hh │ │ │ │ ├── action_partial_lu.hh │ │ │ │ ├── action_rot.hh │ │ │ │ ├── action_symv.hh │ │ │ │ ├── action_syr2.hh │ │ │ │ ├── action_trisolve.hh │ │ │ │ ├── action_trisolve_matrix.hh │ │ │ │ ├── action_trmm.hh │ │ │ │ └── basic_actions.hh │ │ │ ├── cmake │ │ │ │ ├── FindACML.cmake │ │ │ │ ├── FindATLAS.cmake │ │ │ │ ├── FindBlitz.cmake │ │ │ │ ├── FindCBLAS.cmake │ │ │ │ ├── FindGMM.cmake │ │ │ │ ├── FindGOTO.cmake │ │ │ │ ├── FindGOTO2.cmake │ │ │ │ ├── FindMKL.cmake │ │ │ │ ├── FindMTL4.cmake │ │ │ │ ├── FindPackageHandleStandardArgs.cmake │ │ │ │ ├── FindTvmet.cmake │ │ │ │ └── MacroOptionalAddSubdirectory.cmake │ │ │ ├── data │ │ │ │ ├── CMakeLists.txt │ │ │ │ ├── action_settings.txt │ │ │ │ ├── gnuplot_common_settings.hh │ │ │ │ ├── go_mean │ │ │ │ ├── mean.cxx │ │ │ │ ├── mk_gnuplot_script.sh │ │ │ │ ├── mk_mean_script.sh │ │ │ │ ├── mk_new_gnuplot.sh │ │ │ │ ├── perlib_plot_settings.txt │ │ │ │ ├── regularize.cxx │ │ │ │ ├── smooth.cxx │ │ │ │ └── smooth_all.sh │ │ │ ├── generic_bench │ │ │ │ ├── bench.hh │ │ │ │ ├── bench_parameter.hh │ │ │ │ ├── btl.hh │ │ │ │ ├── init │ │ │ │ │ ├── init_function.hh │ │ │ │ │ ├── init_matrix.hh │ │ │ │ │ └── init_vector.hh │ │ │ │ ├── static │ │ │ │ │ ├── bench_static.hh │ │ │ │ │ ├── intel_bench_fixed_size.hh │ │ │ │ │ └── static_size_generator.hh │ │ │ │ ├── timers │ │ │ │ │ ├── STL_perf_analyzer.hh │ │ │ │ │ ├── STL_timer.hh │ │ │ │ │ ├── mixed_perf_analyzer.hh │ │ │ │ │ ├── portable_perf_analyzer.hh │ │ │ │ │ ├── portable_perf_analyzer_old.hh │ │ │ │ │ ├── portable_timer.hh │ │ │ │ │ ├── x86_perf_analyzer.hh │ │ │ │ │ └── x86_timer.hh │ │ │ │ └── utils │ │ │ │ │ ├── size_lin_log.hh │ │ │ │ │ ├── size_log.hh │ │ │ │ │ ├── utilities.h │ │ │ │ │ └── xy_file.hh │ │ │ └── libs │ │ │ │ ├── BLAS │ │ │ │ ├── CMakeLists.txt │ │ │ │ ├── blas.h │ │ │ │ ├── blas_interface.hh │ │ │ │ ├── blas_interface_impl.hh │ │ │ │ ├── c_interface_base.h │ │ │ │ └── main.cpp │ │ │ │ ├── STL │ │ │ │ ├── CMakeLists.txt │ │ │ │ ├── STL_interface.hh │ │ │ │ └── main.cpp │ │ │ │ ├── blitz │ │ │ │ ├── CMakeLists.txt │ │ │ │ ├── blitz_LU_solve_interface.hh │ │ │ │ ├── blitz_interface.hh │ │ │ │ ├── btl_blitz.cpp │ │ │ │ ├── btl_tiny_blitz.cpp │ │ │ │ └── tiny_blitz_interface.hh │ │ │ │ ├── eigen2 │ │ │ │ ├── CMakeLists.txt │ │ │ │ ├── btl_tiny_eigen2.cpp │ │ │ │ ├── eigen2_interface.hh │ │ │ │ ├── main_adv.cpp │ │ │ │ ├── main_linear.cpp │ │ │ │ ├── main_matmat.cpp │ │ │ │ └── main_vecmat.cpp │ │ │ │ ├── eigen3 │ │ │ │ ├── CMakeLists.txt │ │ │ │ ├── btl_tiny_eigen3.cpp │ │ │ │ ├── eigen3_interface.hh │ │ │ │ ├── main_adv.cpp │ │ │ │ ├── main_linear.cpp │ │ │ │ ├── main_matmat.cpp │ │ │ │ └── main_vecmat.cpp │ │ │ │ ├── gmm │ │ │ │ ├── CMakeLists.txt │ │ │ │ ├── gmm_LU_solve_interface.hh │ │ │ │ ├── gmm_interface.hh │ │ │ │ └── main.cpp │ │ │ │ ├── mtl4 │ │ │ │ ├── .kdbgrc.main │ │ │ │ ├── CMakeLists.txt │ │ │ │ ├── main.cpp │ │ │ │ ├── mtl4_LU_solve_interface.hh │ │ │ │ └── mtl4_interface.hh │ │ │ │ ├── tvmet │ │ │ │ ├── CMakeLists.txt │ │ │ │ ├── main.cpp │ │ │ │ └── tvmet_interface.hh │ │ │ │ └── ublas │ │ │ │ ├── CMakeLists.txt │ │ │ │ ├── main.cpp │ │ │ │ └── ublas_interface.hh │ │ ├── check_cache_queries.cpp │ │ ├── eig33.cpp │ │ ├── geometry.cpp │ │ ├── product_threshold.cpp │ │ ├── quat_slerp.cpp │ │ ├── quatmul.cpp │ │ ├── sparse_cholesky.cpp │ │ ├── sparse_dense_product.cpp │ │ ├── sparse_lu.cpp │ │ ├── sparse_product.cpp │ │ ├── sparse_randomsetter.cpp │ │ ├── sparse_setter.cpp │ │ ├── sparse_transpose.cpp │ │ ├── sparse_trisolver.cpp │ │ ├── spmv.cpp │ │ └── vdw_new.cpp │ ├── blas │ │ ├── BandTriangularSolver.h │ │ ├── CMakeLists.txt │ │ ├── README.txt │ │ ├── chbmv.f │ │ ├── chpmv.f │ │ ├── chpr.f │ │ ├── chpr2.f │ │ ├── common.h │ │ ├── complex_double.cpp │ │ ├── complex_single.cpp │ │ ├── complexdots.f │ │ ├── ctbmv.f │ │ ├── ctpmv.f │ │ ├── ctpsv.f │ │ ├── double.cpp │ │ ├── drotm.f │ │ ├── drotmg.f │ │ ├── dsbmv.f │ │ ├── dspmv.f │ │ ├── dspr.f │ │ ├── dspr2.f │ │ ├── dtbmv.f │ │ ├── dtpmv.f │ │ ├── dtpsv.f │ │ ├── level1_cplx_impl.h │ │ ├── level1_impl.h │ │ ├── level1_real_impl.h │ │ ├── level2_cplx_impl.h │ │ ├── level2_impl.h │ │ ├── level2_real_impl.h │ │ ├── level3_impl.h │ │ ├── lsame.f │ │ ├── single.cpp │ │ ├── srotm.f │ │ ├── srotmg.f │ │ ├── ssbmv.f │ │ ├── sspmv.f │ │ ├── sspr.f │ │ ├── sspr2.f │ │ ├── stbmv.f │ │ ├── stpmv.f │ │ ├── stpsv.f │ │ ├── testing │ │ │ ├── CMakeLists.txt │ │ │ ├── cblat1.f │ │ │ ├── cblat2.dat │ │ │ ├── cblat2.f │ │ │ ├── cblat3.dat │ │ │ ├── cblat3.f │ │ │ ├── dblat1.f │ │ │ ├── dblat2.dat │ │ │ ├── dblat2.f │ │ │ ├── dblat3.dat │ │ │ ├── dblat3.f │ │ │ ├── runblastest.sh │ │ │ ├── sblat1.f │ │ │ ├── sblat2.dat │ │ │ ├── sblat2.f │ │ │ ├── sblat3.dat │ │ │ ├── sblat3.f │ │ │ ├── zblat1.f │ │ │ ├── zblat2.dat │ │ │ ├── zblat2.f │ │ │ ├── zblat3.dat │ │ │ └── zblat3.f │ │ ├── xerbla.cpp │ │ ├── zhbmv.f │ │ ├── zhpmv.f │ │ ├── zhpr.f │ │ ├── zhpr2.f │ │ ├── ztbmv.f │ │ ├── ztpmv.f │ │ └── ztpsv.f │ ├── cmake │ │ ├── CMakeDetermineVSServicePack.cmake │ │ ├── EigenConfigureTesting.cmake │ │ ├── EigenDetermineOSVersion.cmake │ │ ├── EigenTesting.cmake │ │ ├── FindAdolc.cmake │ │ ├── FindBLAS.cmake │ │ ├── FindCholmod.cmake │ │ ├── FindEigen2.cmake │ │ ├── FindEigen3.cmake │ │ ├── FindFFTW.cmake │ │ ├── FindGLEW.cmake │ │ ├── FindGMP.cmake │ │ ├── FindGSL.cmake │ │ ├── FindGoogleHash.cmake │ │ ├── FindLAPACK.cmake │ │ ├── FindMPFR.cmake │ │ ├── FindStandardMathLibrary.cmake │ │ ├── FindSuperLU.cmake │ │ ├── FindUmfpack.cmake │ │ ├── RegexUtils.cmake │ │ └── language_support.cmake │ ├── debug │ │ ├── gdb │ │ │ ├── __init__.py │ │ │ └── printers.py │ │ └── msvc │ │ │ └── eigen_autoexp_part.dat │ ├── demos │ │ ├── CMakeLists.txt │ │ ├── mandelbrot │ │ │ ├── CMakeLists.txt │ │ │ ├── README │ │ │ ├── mandelbrot.cpp │ │ │ └── mandelbrot.h │ │ ├── mix_eigen_and_c │ │ │ ├── README │ │ │ ├── binary_library.cpp │ │ │ ├── binary_library.h │ │ │ └── example.c │ │ └── opengl │ │ │ ├── CMakeLists.txt │ │ │ ├── README │ │ │ ├── camera.cpp │ │ │ ├── camera.h │ │ │ ├── gpuhelper.cpp │ │ │ ├── gpuhelper.h │ │ │ ├── icosphere.cpp │ │ │ ├── icosphere.h │ │ │ ├── quaternion_demo.cpp │ │ │ ├── quaternion_demo.h │ │ │ ├── trackball.cpp │ │ │ └── trackball.h │ ├── doc │ │ ├── A05_PortingFrom2To3.dox │ │ ├── A10_Eigen2SupportModes.dox │ │ ├── AsciiQuickReference.txt │ │ ├── B01_Experimental.dox │ │ ├── C00_QuickStartGuide.dox │ │ ├── C01_TutorialMatrixClass.dox │ │ ├── C02_TutorialMatrixArithmetic.dox │ │ ├── C03_TutorialArrayClass.dox │ │ ├── C04_TutorialBlockOperations.dox │ │ ├── C05_TutorialAdvancedInitialization.dox │ │ ├── C06_TutorialLinearAlgebra.dox │ │ ├── C07_TutorialReductionsVisitorsBroadcasting.dox │ │ ├── C08_TutorialGeometry.dox │ │ ├── C09_TutorialSparse.dox │ │ ├── CMakeLists.txt │ │ ├── D01_StlContainers.dox │ │ ├── D03_WrongStackAlignment.dox │ │ ├── D07_PassingByValue.dox │ │ ├── D09_StructHavingEigenMembers.dox │ │ ├── D11_UnalignedArrayAssert.dox │ │ ├── Doxyfile.in │ │ ├── Eigen_Silly_Professor_64x64.png │ │ ├── I00_CustomizingEigen.dox │ │ ├── I01_TopicLazyEvaluation.dox │ │ ├── I02_HiPerformance.dox │ │ ├── I03_InsideEigenExample.dox │ │ ├── I05_FixedSizeVectorizable.dox │ │ ├── I06_TopicEigenExpressionTemplates.dox │ │ ├── I07_TopicScalarTypes.dox │ │ ├── I08_Resizing.dox │ │ ├── I09_Vectorization.dox │ │ ├── I10_Assertions.dox │ │ ├── I11_Aliasing.dox │ │ ├── I12_ClassHierarchy.dox │ │ ├── I13_FunctionsTakingEigenTypes.dox │ │ ├── I14_PreprocessorDirectives.dox │ │ ├── I15_StorageOrders.dox │ │ ├── I16_TemplateKeyword.dox │ │ ├── Overview.dox │ │ ├── QuickReference.dox │ │ ├── TopicLinearAlgebraDecompositions.dox │ │ ├── UsingIntelMKL.dox │ │ ├── eigendoxy.css │ │ ├── eigendoxy_footer.html.in │ │ ├── eigendoxy_header.html.in │ │ ├── eigendoxy_tabs.css │ │ ├── examples │ │ │ ├── .krazy │ │ │ ├── CMakeLists.txt │ │ │ ├── DenseBase_middleCols_int.cpp │ │ │ ├── DenseBase_middleRows_int.cpp │ │ │ ├── DenseBase_template_int_middleCols.cpp │ │ │ ├── DenseBase_template_int_middleRows.cpp │ │ │ ├── MatrixBase_cwise_const.cpp │ │ │ ├── QuickStart_example.cpp │ │ │ ├── QuickStart_example2_dynamic.cpp │ │ │ ├── QuickStart_example2_fixed.cpp │ │ │ ├── TemplateKeyword_flexible.cpp │ │ │ ├── TemplateKeyword_simple.cpp │ │ │ ├── TutorialLinAlgComputeTwice.cpp │ │ │ ├── TutorialLinAlgExComputeSolveError.cpp │ │ │ ├── TutorialLinAlgExSolveColPivHouseholderQR.cpp │ │ │ ├── TutorialLinAlgExSolveLDLT.cpp │ │ │ ├── TutorialLinAlgInverseDeterminant.cpp │ │ │ ├── TutorialLinAlgRankRevealing.cpp │ │ │ ├── TutorialLinAlgSVDSolve.cpp │ │ │ ├── TutorialLinAlgSelfAdjointEigenSolver.cpp │ │ │ ├── TutorialLinAlgSetThreshold.cpp │ │ │ ├── Tutorial_ArrayClass_accessors.cpp │ │ │ ├── Tutorial_ArrayClass_addition.cpp │ │ │ ├── Tutorial_ArrayClass_cwise_other.cpp │ │ │ ├── Tutorial_ArrayClass_interop.cpp │ │ │ ├── Tutorial_ArrayClass_interop_matrix.cpp │ │ │ ├── Tutorial_ArrayClass_mult.cpp │ │ │ ├── Tutorial_BlockOperations_block_assignment.cpp │ │ │ ├── Tutorial_BlockOperations_colrow.cpp │ │ │ ├── Tutorial_BlockOperations_corner.cpp │ │ │ ├── Tutorial_BlockOperations_print_block.cpp │ │ │ ├── Tutorial_BlockOperations_vector.cpp │ │ │ ├── Tutorial_PartialLU_solve.cpp │ │ │ ├── Tutorial_ReductionsVisitorsBroadcasting_broadcast_1nn.cpp │ │ │ ├── Tutorial_ReductionsVisitorsBroadcasting_broadcast_simple.cpp │ │ │ ├── Tutorial_ReductionsVisitorsBroadcasting_broadcast_simple_rowwise.cpp │ │ │ ├── Tutorial_ReductionsVisitorsBroadcasting_colwise.cpp │ │ │ ├── Tutorial_ReductionsVisitorsBroadcasting_maxnorm.cpp │ │ │ ├── Tutorial_ReductionsVisitorsBroadcasting_reductions_bool.cpp │ │ │ ├── Tutorial_ReductionsVisitorsBroadcasting_reductions_norm.cpp │ │ │ ├── Tutorial_ReductionsVisitorsBroadcasting_rowwise.cpp │ │ │ ├── Tutorial_ReductionsVisitorsBroadcasting_visitors.cpp │ │ │ ├── Tutorial_simple_example_dynamic_size.cpp │ │ │ ├── Tutorial_simple_example_fixed_size.cpp │ │ │ ├── class_Block.cpp │ │ │ ├── class_CwiseBinaryOp.cpp │ │ │ ├── class_CwiseUnaryOp.cpp │ │ │ ├── class_CwiseUnaryOp_ptrfun.cpp │ │ │ ├── class_FixedBlock.cpp │ │ │ ├── class_FixedVectorBlock.cpp │ │ │ ├── class_VectorBlock.cpp │ │ │ ├── function_taking_eigenbase.cpp │ │ │ ├── tut_arithmetic_add_sub.cpp │ │ │ ├── tut_arithmetic_dot_cross.cpp │ │ │ ├── tut_arithmetic_matrix_mul.cpp │ │ │ ├── tut_arithmetic_redux_basic.cpp │ │ │ ├── tut_arithmetic_scalar_mul_div.cpp │ │ │ ├── tut_matrix_coefficient_accessors.cpp │ │ │ ├── tut_matrix_resize.cpp │ │ │ └── tut_matrix_resize_fixed_size.cpp │ │ ├── snippets │ │ │ ├── .krazy │ │ │ ├── AngleAxis_mimic_euler.cpp │ │ │ ├── CMakeLists.txt │ │ │ ├── ColPivHouseholderQR_solve.cpp │ │ │ ├── ComplexEigenSolver_compute.cpp │ │ │ ├── ComplexEigenSolver_eigenvalues.cpp │ │ │ ├── ComplexEigenSolver_eigenvectors.cpp │ │ │ ├── ComplexSchur_compute.cpp │ │ │ ├── ComplexSchur_matrixT.cpp │ │ │ ├── ComplexSchur_matrixU.cpp │ │ │ ├── Cwise_abs.cpp │ │ │ ├── Cwise_abs2.cpp │ │ │ ├── Cwise_acos.cpp │ │ │ ├── Cwise_boolean_and.cpp │ │ │ ├── Cwise_boolean_or.cpp │ │ │ ├── Cwise_cos.cpp │ │ │ ├── Cwise_cube.cpp │ │ │ ├── Cwise_equal_equal.cpp │ │ │ ├── Cwise_exp.cpp │ │ │ ├── Cwise_greater.cpp │ │ │ ├── Cwise_greater_equal.cpp │ │ │ ├── Cwise_inverse.cpp │ │ │ ├── Cwise_less.cpp │ │ │ ├── Cwise_less_equal.cpp │ │ │ ├── Cwise_log.cpp │ │ │ ├── Cwise_max.cpp │ │ │ ├── Cwise_min.cpp │ │ │ ├── Cwise_minus.cpp │ │ │ ├── Cwise_minus_equal.cpp │ │ │ ├── Cwise_not_equal.cpp │ │ │ ├── Cwise_plus.cpp │ │ │ ├── Cwise_plus_equal.cpp │ │ │ ├── Cwise_pow.cpp │ │ │ ├── Cwise_product.cpp │ │ │ ├── Cwise_quotient.cpp │ │ │ ├── Cwise_sin.cpp │ │ │ ├── Cwise_slash_equal.cpp │ │ │ ├── Cwise_sqrt.cpp │ │ │ ├── Cwise_square.cpp │ │ │ ├── Cwise_tan.cpp │ │ │ ├── Cwise_times_equal.cpp │ │ │ ├── DenseBase_LinSpaced.cpp │ │ │ ├── DenseBase_LinSpaced_seq.cpp │ │ │ ├── DenseBase_setLinSpaced.cpp │ │ │ ├── DirectionWise_replicate.cpp │ │ │ ├── DirectionWise_replicate_int.cpp │ │ │ ├── EigenSolver_EigenSolver_MatrixType.cpp │ │ │ ├── EigenSolver_compute.cpp │ │ │ ├── EigenSolver_eigenvalues.cpp │ │ │ ├── EigenSolver_eigenvectors.cpp │ │ │ ├── EigenSolver_pseudoEigenvectors.cpp │ │ │ ├── FullPivHouseholderQR_solve.cpp │ │ │ ├── FullPivLU_image.cpp │ │ │ ├── FullPivLU_kernel.cpp │ │ │ ├── FullPivLU_solve.cpp │ │ │ ├── HessenbergDecomposition_compute.cpp │ │ │ ├── HessenbergDecomposition_matrixH.cpp │ │ │ ├── HessenbergDecomposition_packedMatrix.cpp │ │ │ ├── HouseholderQR_solve.cpp │ │ │ ├── HouseholderSequence_HouseholderSequence.cpp │ │ │ ├── IOFormat.cpp │ │ │ ├── JacobiSVD_basic.cpp │ │ │ ├── Jacobi_makeGivens.cpp │ │ │ ├── Jacobi_makeJacobi.cpp │ │ │ ├── LLT_example.cpp │ │ │ ├── LLT_solve.cpp │ │ │ ├── Map_general_stride.cpp │ │ │ ├── Map_inner_stride.cpp │ │ │ ├── Map_outer_stride.cpp │ │ │ ├── Map_placement_new.cpp │ │ │ ├── Map_simple.cpp │ │ │ ├── MatrixBase_adjoint.cpp │ │ │ ├── MatrixBase_all.cpp │ │ │ ├── MatrixBase_array.cpp │ │ │ ├── MatrixBase_array_const.cpp │ │ │ ├── MatrixBase_asDiagonal.cpp │ │ │ ├── MatrixBase_block_int_int.cpp │ │ │ ├── MatrixBase_block_int_int_int_int.cpp │ │ │ ├── MatrixBase_bottomLeftCorner_int_int.cpp │ │ │ ├── MatrixBase_bottomRightCorner_int_int.cpp │ │ │ ├── MatrixBase_bottomRows_int.cpp │ │ │ ├── MatrixBase_cast.cpp │ │ │ ├── MatrixBase_col.cpp │ │ │ ├── MatrixBase_colwise.cpp │ │ │ ├── MatrixBase_computeInverseAndDetWithCheck.cpp │ │ │ ├── MatrixBase_computeInverseWithCheck.cpp │ │ │ ├── MatrixBase_cwiseAbs.cpp │ │ │ ├── MatrixBase_cwiseAbs2.cpp │ │ │ ├── MatrixBase_cwiseEqual.cpp │ │ │ ├── MatrixBase_cwiseInverse.cpp │ │ │ ├── MatrixBase_cwiseMax.cpp │ │ │ ├── MatrixBase_cwiseMin.cpp │ │ │ ├── MatrixBase_cwiseNotEqual.cpp │ │ │ ├── MatrixBase_cwiseProduct.cpp │ │ │ ├── MatrixBase_cwiseQuotient.cpp │ │ │ ├── MatrixBase_cwiseSqrt.cpp │ │ │ ├── MatrixBase_diagonal.cpp │ │ │ ├── MatrixBase_diagonal_int.cpp │ │ │ ├── MatrixBase_diagonal_template_int.cpp │ │ │ ├── MatrixBase_eigenvalues.cpp │ │ │ ├── MatrixBase_end_int.cpp │ │ │ ├── MatrixBase_eval.cpp │ │ │ ├── MatrixBase_extract.cpp │ │ │ ├── MatrixBase_fixedBlock_int_int.cpp │ │ │ ├── MatrixBase_identity.cpp │ │ │ ├── MatrixBase_identity_int_int.cpp │ │ │ ├── MatrixBase_inverse.cpp │ │ │ ├── MatrixBase_isDiagonal.cpp │ │ │ ├── MatrixBase_isIdentity.cpp │ │ │ ├── MatrixBase_isOnes.cpp │ │ │ ├── MatrixBase_isOrthogonal.cpp │ │ │ ├── MatrixBase_isUnitary.cpp │ │ │ ├── MatrixBase_isZero.cpp │ │ │ ├── MatrixBase_leftCols_int.cpp │ │ │ ├── MatrixBase_marked.cpp │ │ │ ├── MatrixBase_noalias.cpp │ │ │ ├── MatrixBase_ones.cpp │ │ │ ├── MatrixBase_ones_int.cpp │ │ │ ├── MatrixBase_ones_int_int.cpp │ │ │ ├── MatrixBase_operatorNorm.cpp │ │ │ ├── MatrixBase_part.cpp │ │ │ ├── MatrixBase_prod.cpp │ │ │ ├── MatrixBase_random.cpp │ │ │ ├── MatrixBase_random_int.cpp │ │ │ ├── MatrixBase_random_int_int.cpp │ │ │ ├── MatrixBase_replicate.cpp │ │ │ ├── MatrixBase_replicate_int_int.cpp │ │ │ ├── MatrixBase_reverse.cpp │ │ │ ├── MatrixBase_rightCols_int.cpp │ │ │ ├── MatrixBase_row.cpp │ │ │ ├── MatrixBase_rowwise.cpp │ │ │ ├── MatrixBase_segment_int_int.cpp │ │ │ ├── MatrixBase_select.cpp │ │ │ ├── MatrixBase_set.cpp │ │ │ ├── MatrixBase_setIdentity.cpp │ │ │ ├── MatrixBase_setOnes.cpp │ │ │ ├── MatrixBase_setRandom.cpp │ │ │ ├── MatrixBase_setZero.cpp │ │ │ ├── MatrixBase_start_int.cpp │ │ │ ├── MatrixBase_template_int_bottomRows.cpp │ │ │ ├── MatrixBase_template_int_end.cpp │ │ │ ├── MatrixBase_template_int_int_bottomLeftCorner.cpp │ │ │ ├── MatrixBase_template_int_int_bottomRightCorner.cpp │ │ │ ├── MatrixBase_template_int_int_topLeftCorner.cpp │ │ │ ├── MatrixBase_template_int_int_topRightCorner.cpp │ │ │ ├── MatrixBase_template_int_leftCols.cpp │ │ │ ├── MatrixBase_template_int_rightCols.cpp │ │ │ ├── MatrixBase_template_int_segment.cpp │ │ │ ├── MatrixBase_template_int_start.cpp │ │ │ ├── MatrixBase_template_int_topRows.cpp │ │ │ ├── MatrixBase_topLeftCorner_int_int.cpp │ │ │ ├── MatrixBase_topRightCorner_int_int.cpp │ │ │ ├── MatrixBase_topRows_int.cpp │ │ │ ├── MatrixBase_transpose.cpp │ │ │ ├── MatrixBase_zero.cpp │ │ │ ├── MatrixBase_zero_int.cpp │ │ │ ├── MatrixBase_zero_int_int.cpp │ │ │ ├── Matrix_resize_NoChange_int.cpp │ │ │ ├── Matrix_resize_int.cpp │ │ │ ├── Matrix_resize_int_NoChange.cpp │ │ │ ├── Matrix_resize_int_int.cpp │ │ │ ├── Matrix_setConstant_int.cpp │ │ │ ├── Matrix_setConstant_int_int.cpp │ │ │ ├── Matrix_setIdentity_int_int.cpp │ │ │ ├── Matrix_setOnes_int.cpp │ │ │ ├── Matrix_setOnes_int_int.cpp │ │ │ ├── Matrix_setRandom_int.cpp │ │ │ ├── Matrix_setRandom_int_int.cpp │ │ │ ├── Matrix_setZero_int.cpp │ │ │ ├── Matrix_setZero_int_int.cpp │ │ │ ├── PartialPivLU_solve.cpp │ │ │ ├── PartialRedux_count.cpp │ │ │ ├── PartialRedux_maxCoeff.cpp │ │ │ ├── PartialRedux_minCoeff.cpp │ │ │ ├── PartialRedux_norm.cpp │ │ │ ├── PartialRedux_prod.cpp │ │ │ ├── PartialRedux_squaredNorm.cpp │ │ │ ├── PartialRedux_sum.cpp │ │ │ ├── RealSchur_RealSchur_MatrixType.cpp │ │ │ ├── RealSchur_compute.cpp │ │ │ ├── SelfAdjointEigenSolver_SelfAdjointEigenSolver.cpp │ │ │ ├── SelfAdjointEigenSolver_SelfAdjointEigenSolver_MatrixType.cpp │ │ │ ├── SelfAdjointEigenSolver_SelfAdjointEigenSolver_MatrixType2.cpp │ │ │ ├── SelfAdjointEigenSolver_compute_MatrixType.cpp │ │ │ ├── SelfAdjointEigenSolver_compute_MatrixType2.cpp │ │ │ ├── SelfAdjointEigenSolver_eigenvalues.cpp │ │ │ ├── SelfAdjointEigenSolver_eigenvectors.cpp │ │ │ ├── SelfAdjointEigenSolver_operatorInverseSqrt.cpp │ │ │ ├── SelfAdjointEigenSolver_operatorSqrt.cpp │ │ │ ├── SelfAdjointView_eigenvalues.cpp │ │ │ ├── SelfAdjointView_operatorNorm.cpp │ │ │ ├── TopicAliasing_block.cpp │ │ │ ├── TopicAliasing_block_correct.cpp │ │ │ ├── TopicAliasing_cwise.cpp │ │ │ ├── TopicAliasing_mult1.cpp │ │ │ ├── TopicAliasing_mult2.cpp │ │ │ ├── TopicAliasing_mult3.cpp │ │ │ ├── TopicStorageOrders_example.cpp │ │ │ ├── Tridiagonalization_Tridiagonalization_MatrixType.cpp │ │ │ ├── Tridiagonalization_compute.cpp │ │ │ ├── Tridiagonalization_decomposeInPlace.cpp │ │ │ ├── Tridiagonalization_diagonal.cpp │ │ │ ├── Tridiagonalization_householderCoefficients.cpp │ │ │ ├── Tridiagonalization_packedMatrix.cpp │ │ │ ├── Tutorial_AdvancedInitialization_Block.cpp │ │ │ ├── Tutorial_AdvancedInitialization_CommaTemporary.cpp │ │ │ ├── Tutorial_AdvancedInitialization_Join.cpp │ │ │ ├── Tutorial_AdvancedInitialization_LinSpaced.cpp │ │ │ ├── Tutorial_AdvancedInitialization_ThreeWays.cpp │ │ │ ├── Tutorial_AdvancedInitialization_Zero.cpp │ │ │ ├── Tutorial_commainit_01.cpp │ │ │ ├── Tutorial_commainit_01b.cpp │ │ │ ├── Tutorial_commainit_02.cpp │ │ │ ├── Tutorial_solve_matrix_inverse.cpp │ │ │ ├── Tutorial_solve_multiple_rhs.cpp │ │ │ ├── Tutorial_solve_reuse_decomposition.cpp │ │ │ ├── Tutorial_solve_singular.cpp │ │ │ ├── Tutorial_solve_triangular.cpp │ │ │ ├── Tutorial_solve_triangular_inplace.cpp │ │ │ ├── Vectorwise_reverse.cpp │ │ │ ├── class_FullPivLU.cpp │ │ │ ├── compile_snippet.cpp.in │ │ │ ├── tut_arithmetic_redux_minmax.cpp │ │ │ ├── tut_arithmetic_transpose_aliasing.cpp │ │ │ ├── tut_arithmetic_transpose_conjugate.cpp │ │ │ ├── tut_arithmetic_transpose_inplace.cpp │ │ │ └── tut_matrix_assignment_resizing.cpp │ │ └── tutorial.cpp │ ├── eigen3.pc.in │ ├── failtest │ │ ├── CMakeLists.txt │ │ ├── block_nonconst_ctor_on_const_xpr_0.cpp │ │ ├── block_nonconst_ctor_on_const_xpr_1.cpp │ │ ├── block_nonconst_ctor_on_const_xpr_2.cpp │ │ ├── block_on_const_type_actually_const_0.cpp │ │ ├── block_on_const_type_actually_const_1.cpp │ │ ├── const_qualified_block_method_retval_0.cpp │ │ ├── const_qualified_block_method_retval_1.cpp │ │ ├── const_qualified_diagonal_method_retval.cpp │ │ ├── const_qualified_transpose_method_retval.cpp │ │ ├── diagonal_nonconst_ctor_on_const_xpr.cpp │ │ ├── diagonal_on_const_type_actually_const.cpp │ │ ├── failtest_sanity_check.cpp │ │ ├── map_nonconst_ctor_on_const_ptr_0.cpp │ │ ├── map_nonconst_ctor_on_const_ptr_1.cpp │ │ ├── map_nonconst_ctor_on_const_ptr_2.cpp │ │ ├── map_nonconst_ctor_on_const_ptr_3.cpp │ │ ├── map_nonconst_ctor_on_const_ptr_4.cpp │ │ ├── map_on_const_type_actually_const_0.cpp │ │ ├── map_on_const_type_actually_const_1.cpp │ │ ├── transpose_nonconst_ctor_on_const_xpr.cpp │ │ └── transpose_on_const_type_actually_const.cpp │ ├── lapack │ │ ├── CMakeLists.txt │ │ ├── cholesky.cpp │ │ ├── complex_double.cpp │ │ ├── complex_single.cpp │ │ ├── double.cpp │ │ ├── eigenvalues.cpp │ │ ├── lapack_common.h │ │ ├── lu.cpp │ │ └── single.cpp │ ├── scripts │ │ ├── CMakeLists.txt │ │ ├── buildtests.in │ │ ├── check.in │ │ ├── debug.in │ │ ├── eigen_gen_credits.cpp │ │ ├── eigen_gen_docs │ │ └── release.in │ ├── signature_of_eigen3_matrix_library │ ├── test │ │ ├── CMakeLists.txt │ │ ├── adjoint.cpp │ │ ├── array.cpp │ │ ├── array_for_matrix.cpp │ │ ├── array_replicate.cpp │ │ ├── array_reverse.cpp │ │ ├── bandmatrix.cpp │ │ ├── basicstuff.cpp │ │ ├── bicgstab.cpp │ │ ├── block.cpp │ │ ├── cholesky.cpp │ │ ├── cholmod_support.cpp │ │ ├── commainitializer.cpp │ │ ├── conjugate_gradient.cpp │ │ ├── conservative_resize.cpp │ │ ├── corners.cpp │ │ ├── cwiseop.cpp │ │ ├── determinant.cpp │ │ ├── diagonal.cpp │ │ ├── diagonalmatrices.cpp │ │ ├── dontalign.cpp │ │ ├── dynalloc.cpp │ │ ├── eigen2 │ │ │ ├── CMakeLists.txt │ │ │ ├── eigen2_adjoint.cpp │ │ │ ├── eigen2_alignedbox.cpp │ │ │ ├── eigen2_array.cpp │ │ │ ├── eigen2_basicstuff.cpp │ │ │ ├── eigen2_bug_132.cpp │ │ │ ├── eigen2_cholesky.cpp │ │ │ ├── eigen2_commainitializer.cpp │ │ │ ├── eigen2_cwiseop.cpp │ │ │ ├── eigen2_determinant.cpp │ │ │ ├── eigen2_dynalloc.cpp │ │ │ ├── eigen2_eigensolver.cpp │ │ │ ├── eigen2_first_aligned.cpp │ │ │ ├── eigen2_geometry.cpp │ │ │ ├── eigen2_geometry_with_eigen2_prefix.cpp │ │ │ ├── eigen2_hyperplane.cpp │ │ │ ├── eigen2_inverse.cpp │ │ │ ├── eigen2_linearstructure.cpp │ │ │ ├── eigen2_lu.cpp │ │ │ ├── eigen2_map.cpp │ │ │ ├── eigen2_meta.cpp │ │ │ ├── eigen2_miscmatrices.cpp │ │ │ ├── eigen2_mixingtypes.cpp │ │ │ ├── eigen2_newstdvector.cpp │ │ │ ├── eigen2_nomalloc.cpp │ │ │ ├── eigen2_packetmath.cpp │ │ │ ├── eigen2_parametrizedline.cpp │ │ │ ├── eigen2_prec_inverse_4x4.cpp │ │ │ ├── eigen2_product_large.cpp │ │ │ ├── eigen2_product_small.cpp │ │ │ ├── eigen2_qr.cpp │ │ │ ├── eigen2_qtvector.cpp │ │ │ ├── eigen2_regression.cpp │ │ │ ├── eigen2_sizeof.cpp │ │ │ ├── eigen2_smallvectors.cpp │ │ │ ├── eigen2_sparse_basic.cpp │ │ │ ├── eigen2_sparse_product.cpp │ │ │ ├── eigen2_sparse_solvers.cpp │ │ │ ├── eigen2_sparse_vector.cpp │ │ │ ├── eigen2_stdvector.cpp │ │ │ ├── eigen2_submatrices.cpp │ │ │ ├── eigen2_sum.cpp │ │ │ ├── eigen2_svd.cpp │ │ │ ├── eigen2_swap.cpp │ │ │ ├── eigen2_triangular.cpp │ │ │ ├── eigen2_unalignedassert.cpp │ │ │ ├── eigen2_visitor.cpp │ │ │ ├── gsl_helper.h │ │ │ ├── main.h │ │ │ ├── product.h │ │ │ ├── runtest.sh │ │ │ ├── sparse.h │ │ │ └── testsuite.cmake │ │ ├── eigen2support.cpp │ │ ├── eigensolver_complex.cpp │ │ ├── eigensolver_generic.cpp │ │ ├── eigensolver_selfadjoint.cpp │ │ ├── exceptions.cpp │ │ ├── first_aligned.cpp │ │ ├── geo_alignedbox.cpp │ │ ├── geo_eulerangles.cpp │ │ ├── geo_homogeneous.cpp │ │ ├── geo_hyperplane.cpp │ │ ├── geo_orthomethods.cpp │ │ ├── geo_parametrizedline.cpp │ │ ├── geo_quaternion.cpp │ │ ├── geo_transformations.cpp │ │ ├── gsl_helper.h │ │ ├── hessenberg.cpp │ │ ├── householder.cpp │ │ ├── integer_types.cpp │ │ ├── inverse.cpp │ │ ├── jacobi.cpp │ │ ├── jacobisvd.cpp │ │ ├── linearstructure.cpp │ │ ├── lu.cpp │ │ ├── main.h │ │ ├── map.cpp │ │ ├── mapstaticmethods.cpp │ │ ├── mapstride.cpp │ │ ├── meta.cpp │ │ ├── miscmatrices.cpp │ │ ├── mixingtypes.cpp │ │ ├── nesting_ops.cpp │ │ ├── nomalloc.cpp │ │ ├── nullary.cpp │ │ ├── packetmath.cpp │ │ ├── pardiso_support.cpp │ │ ├── permutationmatrices.cpp │ │ ├── prec_inverse_4x4.cpp │ │ ├── product.h │ │ ├── product_extra.cpp │ │ ├── product_large.cpp │ │ ├── product_mmtr.cpp │ │ ├── product_notemporary.cpp │ │ ├── product_selfadjoint.cpp │ │ ├── product_small.cpp │ │ ├── product_symm.cpp │ │ ├── product_syrk.cpp │ │ ├── product_trmm.cpp │ │ ├── product_trmv.cpp │ │ ├── product_trsolve.cpp │ │ ├── qr.cpp │ │ ├── qr_colpivoting.cpp │ │ ├── qr_fullpivoting.cpp │ │ ├── qtvector.cpp │ │ ├── redux.cpp │ │ ├── resize.cpp │ │ ├── runtest.sh │ │ ├── schur_complex.cpp │ │ ├── schur_real.cpp │ │ ├── selfadjoint.cpp │ │ ├── simplicial_cholesky.cpp │ │ ├── sizeof.cpp │ │ ├── sizeoverflow.cpp │ │ ├── smallvectors.cpp │ │ ├── sparse.h │ │ ├── sparse_basic.cpp │ │ ├── sparse_permutations.cpp │ │ ├── sparse_product.cpp │ │ ├── sparse_solver.h │ │ ├── sparse_solvers.cpp │ │ ├── sparse_vector.cpp │ │ ├── stable_norm.cpp │ │ ├── stddeque.cpp │ │ ├── stdlist.cpp │ │ ├── stdvector.cpp │ │ ├── stdvector_overload.cpp │ │ ├── superlu_support.cpp │ │ ├── swap.cpp │ │ ├── testsuite.cmake │ │ ├── triangular.cpp │ │ ├── umeyama.cpp │ │ ├── umfpack_support.cpp │ │ ├── unalignedassert.cpp │ │ ├── unalignedcount.cpp │ │ ├── upperbidiagonalization.cpp │ │ ├── vectorization_logic.cpp │ │ ├── vectorwiseop.cpp │ │ ├── visitor.cpp │ │ └── zerosized.cpp │ └── unsupported │ │ ├── CMakeLists.txt │ │ ├── Eigen │ │ ├── AdolcForward │ │ ├── AlignedVector3 │ │ ├── AutoDiff │ │ ├── BVH │ │ ├── CMakeLists.txt │ │ ├── FFT │ │ ├── IterativeSolvers │ │ ├── KroneckerProduct │ │ ├── MPRealSupport │ │ ├── MatrixFunctions │ │ ├── MoreVectorization │ │ ├── NonLinearOptimization │ │ ├── NumericalDiff │ │ ├── OpenGLSupport │ │ ├── Polynomials │ │ ├── Skyline │ │ ├── SparseExtra │ │ ├── Splines │ │ └── src │ │ │ ├── AutoDiff │ │ │ ├── AutoDiffJacobian.h │ │ │ ├── AutoDiffScalar.h │ │ │ ├── AutoDiffVector.h │ │ │ └── CMakeLists.txt │ │ │ ├── BVH │ │ │ ├── BVAlgorithms.h │ │ │ ├── CMakeLists.txt │ │ │ └── KdBVH.h │ │ │ ├── CMakeLists.txt │ │ │ ├── FFT │ │ │ ├── CMakeLists.txt │ │ │ ├── ei_fftw_impl.h │ │ │ └── ei_kissfft_impl.h │ │ │ ├── IterativeSolvers │ │ │ ├── CMakeLists.txt │ │ │ ├── ConstrainedConjGrad.h │ │ │ ├── IncompleteLU.h │ │ │ └── IterationController.h │ │ │ ├── KroneckerProduct │ │ │ ├── CMakeLists.txt │ │ │ └── KroneckerTensorProduct.h │ │ │ ├── MatrixFunctions │ │ │ ├── CMakeLists.txt │ │ │ ├── MatrixExponential.h │ │ │ ├── MatrixFunction.h │ │ │ ├── MatrixFunctionAtomic.h │ │ │ ├── MatrixLogarithm.h │ │ │ ├── MatrixSquareRoot.h │ │ │ └── StemFunction.h │ │ │ ├── MoreVectorization │ │ │ ├── CMakeLists.txt │ │ │ └── MathFunctions.h │ │ │ ├── NonLinearOptimization │ │ │ ├── CMakeLists.txt │ │ │ ├── HybridNonLinearSolver.h │ │ │ ├── LevenbergMarquardt.h │ │ │ ├── chkder.h │ │ │ ├── covar.h │ │ │ ├── dogleg.h │ │ │ ├── fdjac1.h │ │ │ ├── lmpar.h │ │ │ ├── qrsolv.h │ │ │ ├── r1mpyq.h │ │ │ ├── r1updt.h │ │ │ └── rwupdt.h │ │ │ ├── NumericalDiff │ │ │ ├── CMakeLists.txt │ │ │ └── NumericalDiff.h │ │ │ ├── Polynomials │ │ │ ├── CMakeLists.txt │ │ │ ├── Companion.h │ │ │ ├── PolynomialSolver.h │ │ │ └── PolynomialUtils.h │ │ │ ├── Skyline │ │ │ ├── CMakeLists.txt │ │ │ ├── SkylineInplaceLU.h │ │ │ ├── SkylineMatrix.h │ │ │ ├── SkylineMatrixBase.h │ │ │ ├── SkylineProduct.h │ │ │ ├── SkylineStorage.h │ │ │ └── SkylineUtil.h │ │ │ ├── SparseExtra │ │ │ ├── BlockOfDynamicSparseMatrix.h │ │ │ ├── CMakeLists.txt │ │ │ ├── DynamicSparseMatrix.h │ │ │ ├── MarketIO.h │ │ │ └── RandomSetter.h │ │ │ └── Splines │ │ │ ├── CMakeLists.txt │ │ │ ├── Spline.h │ │ │ ├── SplineFitting.h │ │ │ └── SplineFwd.h │ │ ├── README.txt │ │ ├── doc │ │ ├── CMakeLists.txt │ │ ├── Doxyfile.in │ │ ├── Overview.dox │ │ ├── examples │ │ │ ├── BVH_Example.cpp │ │ │ ├── CMakeLists.txt │ │ │ ├── FFT.cpp │ │ │ ├── MatrixExponential.cpp │ │ │ ├── MatrixFunction.cpp │ │ │ ├── MatrixLogarithm.cpp │ │ │ ├── MatrixSine.cpp │ │ │ ├── MatrixSinh.cpp │ │ │ ├── MatrixSquareRoot.cpp │ │ │ ├── PolynomialSolver1.cpp │ │ │ └── PolynomialUtils1.cpp │ │ └── snippets │ │ │ └── CMakeLists.txt │ │ └── test │ │ ├── BVH.cpp │ │ ├── CMakeLists.txt │ │ ├── FFT.cpp │ │ ├── FFTW.cpp │ │ ├── NonLinearOptimization.cpp │ │ ├── NumericalDiff.cpp │ │ ├── alignedvector3.cpp │ │ ├── autodiff.cpp │ │ ├── forward_adolc.cpp │ │ ├── kronecker_product.cpp │ │ ├── matrix_exponential.cpp │ │ ├── matrix_function.cpp │ │ ├── matrix_square_root.cpp │ │ ├── mpreal │ │ ├── dlmalloc.c │ │ ├── dlmalloc.h │ │ ├── mpreal.cpp │ │ └── mpreal.h │ │ ├── mpreal_support.cpp │ │ ├── openglsupport.cpp │ │ ├── polynomialsolver.cpp │ │ ├── polynomialutils.cpp │ │ ├── sparse_extra.cpp │ │ └── splines.cpp ├── EigenOld │ ├── .hg_archival.txt │ ├── .hgignore │ ├── .hgtags │ ├── .krazy │ ├── Array │ ├── CMakeLists.txt │ ├── COPYING │ ├── COPYING.LESSER │ ├── CTestConfig.cmake │ ├── Cholesky │ ├── Core │ ├── Dense │ ├── Doxyfile │ ├── Eigen │ ├── Eigen2Support │ ├── Eigenvalues │ ├── Geometry │ ├── Householder │ ├── Jacobi │ ├── LU │ ├── Mainpage.dox │ ├── QR │ ├── QtAlignedMalloc │ ├── SVD │ ├── Sparse │ ├── StdDeque │ ├── StdList │ ├── StdVector │ ├── bench │ │ ├── BenchSparseUtil.h │ │ ├── BenchTimer.h │ │ ├── BenchUtil.h │ │ ├── README.txt │ │ ├── basicbench.cxxlist │ │ ├── basicbenchmark.cpp │ │ ├── basicbenchmark.h │ │ ├── benchBlasGemm.cpp │ │ ├── benchCholesky.cpp │ │ ├── benchEigenSolver.cpp │ │ ├── benchVecAdd.cpp │ │ ├── bench_multi_compilers.sh │ │ ├── bench_sum.cpp │ │ ├── bench_unrolling │ │ ├── benchmark.cpp │ │ ├── benchmarkSlice.cpp │ │ ├── benchmarkX.cpp │ │ ├── benchmarkXcwise.cpp │ │ ├── benchmark_suite │ │ ├── btl │ │ │ ├── CMakeLists.txt │ │ │ ├── COPYING │ │ │ ├── README │ │ │ ├── actions │ │ │ │ ├── action_aat_product.hh │ │ │ │ ├── action_ata_product.hh │ │ │ │ ├── action_atv_product.hh │ │ │ │ ├── action_axpby.hh │ │ │ │ ├── action_axpy.hh │ │ │ │ ├── action_cholesky.hh │ │ │ │ ├── action_hessenberg.hh │ │ │ │ ├── action_lu_decomp.hh │ │ │ │ ├── action_lu_solve.hh │ │ │ │ ├── action_matrix_matrix_product.hh │ │ │ │ ├── action_matrix_matrix_product_bis.hh │ │ │ │ ├── action_matrix_vector_product.hh │ │ │ │ ├── action_trisolve.hh │ │ │ │ ├── action_trisolve_matrix.hh │ │ │ │ └── basic_actions.hh │ │ │ ├── cmake │ │ │ │ ├── FindATLAS.cmake │ │ │ │ ├── FindBlitz.cmake │ │ │ │ ├── FindCBLAS.cmake │ │ │ │ ├── FindEigen.cmake │ │ │ │ ├── FindEigen2.cmake │ │ │ │ ├── FindGMM.cmake │ │ │ │ ├── FindGOTO.cmake │ │ │ │ ├── FindMKL.cmake │ │ │ │ ├── FindMTL4.cmake │ │ │ │ ├── FindPackageHandleStandardArgs.cmake │ │ │ │ ├── FindTvmet.cmake │ │ │ │ └── MacroOptionalAddSubdirectory.cmake │ │ │ ├── data │ │ │ │ ├── CMakeLists.txt │ │ │ │ ├── action_settings.txt │ │ │ │ ├── gnuplot_common_settings.hh │ │ │ │ ├── go_mean │ │ │ │ ├── mean.cxx │ │ │ │ ├── mk_gnuplot_script.sh │ │ │ │ ├── mk_mean_script.sh │ │ │ │ ├── mk_new_gnuplot.sh │ │ │ │ ├── perlib_plot_settings.txt │ │ │ │ ├── regularize.cxx │ │ │ │ ├── smooth.cxx │ │ │ │ └── smooth_all.sh │ │ │ ├── generic_bench │ │ │ │ ├── bench.hh │ │ │ │ ├── bench_parameter.hh │ │ │ │ ├── btl.hh │ │ │ │ ├── init │ │ │ │ │ ├── init_function.hh │ │ │ │ │ ├── init_matrix.hh │ │ │ │ │ └── init_vector.hh │ │ │ │ ├── static │ │ │ │ │ ├── bench_static.hh │ │ │ │ │ ├── intel_bench_fixed_size.hh │ │ │ │ │ └── static_size_generator.hh │ │ │ │ ├── timers │ │ │ │ │ ├── STL_perf_analyzer.hh │ │ │ │ │ ├── STL_timer.hh │ │ │ │ │ ├── mixed_perf_analyzer.hh │ │ │ │ │ ├── portable_perf_analyzer.hh │ │ │ │ │ ├── portable_perf_analyzer_old.hh │ │ │ │ │ ├── portable_timer.hh │ │ │ │ │ ├── x86_perf_analyzer.hh │ │ │ │ │ └── x86_timer.hh │ │ │ │ └── utils │ │ │ │ │ ├── size_lin_log.hh │ │ │ │ │ ├── size_log.hh │ │ │ │ │ ├── utilities.h │ │ │ │ │ └── xy_file.hh │ │ │ └── libs │ │ │ │ ├── C │ │ │ │ ├── CMakeLists.txt │ │ │ │ ├── C_interface.hh │ │ │ │ └── main.cpp │ │ │ │ ├── C_BLAS │ │ │ │ ├── CMakeLists.txt │ │ │ │ ├── C_BLAS_interface.hh │ │ │ │ └── main.cpp │ │ │ │ ├── STL │ │ │ │ ├── CMakeLists.txt │ │ │ │ ├── STL_interface.hh │ │ │ │ └── main.cpp │ │ │ │ ├── STL_algo │ │ │ │ ├── CMakeLists.txt │ │ │ │ ├── STL_algo_interface.hh │ │ │ │ └── main.cpp │ │ │ │ ├── blitz │ │ │ │ ├── CMakeLists.txt │ │ │ │ ├── blitz_LU_solve_interface.hh │ │ │ │ ├── blitz_interface.hh │ │ │ │ ├── btl_blitz.cpp │ │ │ │ ├── btl_tiny_blitz.cpp │ │ │ │ └── tiny_blitz_interface.hh │ │ │ │ ├── eigen2 │ │ │ │ ├── CMakeLists.txt │ │ │ │ ├── btl_tiny_eigen2.cpp │ │ │ │ ├── eigen2_LU_solve_interface.hh │ │ │ │ ├── eigen2_interface.hh │ │ │ │ ├── main_adv.cpp │ │ │ │ ├── main_linear.cpp │ │ │ │ ├── main_matmat.cpp │ │ │ │ └── main_vecmat.cpp │ │ │ │ ├── f77 │ │ │ │ ├── CMakeLists.txt │ │ │ │ ├── daat.f │ │ │ │ ├── data.f │ │ │ │ ├── daxpy.f │ │ │ │ ├── dmxm.f │ │ │ │ ├── dmxm.f.mfr │ │ │ │ ├── dmxv.f │ │ │ │ ├── f77_interface.hh │ │ │ │ ├── f77_interface_base.hh │ │ │ │ ├── main.cpp │ │ │ │ ├── saat.f │ │ │ │ ├── sata.f │ │ │ │ ├── saxpy.f │ │ │ │ ├── smxm.f │ │ │ │ ├── smxv.f │ │ │ │ └── test_interface.hh │ │ │ │ ├── gmm │ │ │ │ ├── CMakeLists.txt │ │ │ │ ├── gmm_LU_solve_interface.hh │ │ │ │ ├── gmm_interface.hh │ │ │ │ └── main.cpp │ │ │ │ ├── hand_vec │ │ │ │ ├── CMakeLists.txt │ │ │ │ ├── hand_vec_interface.hh │ │ │ │ └── main.cpp │ │ │ │ ├── mtl4 │ │ │ │ ├── .kdbgrc.main │ │ │ │ ├── CMakeLists.txt │ │ │ │ ├── main.cpp │ │ │ │ ├── mtl4_LU_solve_interface.hh │ │ │ │ └── mtl4_interface.hh │ │ │ │ ├── tvmet │ │ │ │ ├── CMakeLists.txt │ │ │ │ ├── main.cpp │ │ │ │ └── tvmet_interface.hh │ │ │ │ └── ublas │ │ │ │ ├── CMakeLists.txt │ │ │ │ ├── main.cpp │ │ │ │ └── ublas_interface.hh │ │ ├── sparse_cholesky.cpp │ │ ├── sparse_dense_product.cpp │ │ ├── sparse_lu.cpp │ │ ├── sparse_product.cpp │ │ ├── sparse_randomsetter.cpp │ │ ├── sparse_setter.cpp │ │ ├── sparse_transpose.cpp │ │ ├── sparse_trisolver.cpp │ │ └── vdw_new.cpp │ ├── cmake │ │ ├── FindCholmod.cmake │ │ ├── FindGSL.cmake │ │ ├── FindGoogleHash.cmake │ │ ├── FindStandardMathLibrary.cmake │ │ ├── FindSuperLU.cmake │ │ ├── FindTaucs.cmake │ │ └── FindUmfpack.cmake │ ├── demos │ │ ├── CMakeLists.txt │ │ ├── mandelbrot │ │ │ ├── CMakeLists.txt │ │ │ ├── README │ │ │ ├── mandelbrot.cpp │ │ │ └── mandelbrot.h │ │ └── opengl │ │ │ ├── CMakeLists.txt │ │ │ ├── README │ │ │ ├── camera.cpp │ │ │ ├── camera.h │ │ │ ├── gpuhelper.cpp │ │ │ ├── gpuhelper.h │ │ │ ├── icosphere.cpp │ │ │ ├── icosphere.h │ │ │ ├── quaternion_demo.cpp │ │ │ ├── quaternion_demo.h │ │ │ ├── trackball.cpp │ │ │ └── trackball.h │ ├── disabled │ │ ├── ArrayBase.h │ │ ├── EulerAngles.h │ │ ├── Eval.h │ │ ├── EvalOMP.h │ │ ├── Eval_MatrixType.cpp │ │ ├── HashMatrix.h │ │ ├── Householder.h │ │ ├── LinkedVectorMatrix.h │ │ ├── Product.h │ │ ├── SparseSetter.h │ │ ├── apidox_preprocessing.sh │ │ ├── class_Eval.cpp │ │ ├── ompbench.cxxlist │ │ └── ompbenchmark.cpp │ ├── doc │ │ ├── CMakeLists.txt │ │ ├── CustomizingEigen.dox │ │ ├── D03_WrongStackAlignment.dox │ │ ├── Doxyfile.in │ │ ├── Eigen_Silly_Professor_64x64.png │ │ ├── Experimental.dox │ │ ├── FixedSizeVectorizable.dox │ │ ├── InsideEigenExample.dox │ │ ├── Overview.dox │ │ ├── PassingByValue.dox │ │ ├── QuickStartGuide.dox │ │ ├── StlContainers.dox │ │ ├── StructHavingEigenMembers.dox │ │ ├── TopicLazyEvaluation.dox │ │ ├── TutorialGeometry.dox │ │ ├── TutorialLinearAlgebra.dox │ │ ├── TutorialSparse.dox │ │ ├── UnalignedArrayAssert.dox │ │ ├── buildexamplelist.sh │ │ ├── cleanhierarchy.sh │ │ ├── echelon.cpp │ │ ├── eigendoxy.css │ │ ├── eigendoxy_footer.html.in │ │ ├── eigendoxy_header.html.in │ │ ├── eigendoxy_tabs.css │ │ ├── example.cpp │ │ ├── examples │ │ │ ├── .krazy │ │ │ ├── CMakeLists.txt │ │ │ ├── Tutorial_simple_example_dynamic_size.cpp │ │ │ ├── Tutorial_simple_example_fixed_size.cpp │ │ │ ├── class_Block.cpp │ │ │ ├── class_CwiseBinaryOp.cpp │ │ │ ├── class_CwiseUnaryOp.cpp │ │ │ └── class_FixedBlock.cpp │ │ ├── snippets │ │ │ ├── .krazy │ │ │ ├── AngleAxis_mimic_euler.cpp │ │ │ ├── CMakeLists.txt │ │ │ ├── Cwise_abs.cpp │ │ │ ├── Cwise_abs2.cpp │ │ │ ├── Cwise_cos.cpp │ │ │ ├── Cwise_cube.cpp │ │ │ ├── Cwise_equal_equal.cpp │ │ │ ├── Cwise_exp.cpp │ │ │ ├── Cwise_greater.cpp │ │ │ ├── Cwise_greater_equal.cpp │ │ │ ├── Cwise_inverse.cpp │ │ │ ├── Cwise_less.cpp │ │ │ ├── Cwise_less_equal.cpp │ │ │ ├── Cwise_log.cpp │ │ │ ├── Cwise_max.cpp │ │ │ ├── Cwise_min.cpp │ │ │ ├── Cwise_minus.cpp │ │ │ ├── Cwise_minus_equal.cpp │ │ │ ├── Cwise_not_equal.cpp │ │ │ ├── Cwise_plus.cpp │ │ │ ├── Cwise_plus_equal.cpp │ │ │ ├── Cwise_pow.cpp │ │ │ ├── Cwise_product.cpp │ │ │ ├── Cwise_quotient.cpp │ │ │ ├── Cwise_sin.cpp │ │ │ ├── Cwise_slash_equal.cpp │ │ │ ├── Cwise_sqrt.cpp │ │ │ ├── Cwise_square.cpp │ │ │ ├── Cwise_times_equal.cpp │ │ │ ├── IOFormat.cpp │ │ │ ├── LLT_solve.cpp │ │ │ ├── LU_computeImage.cpp │ │ │ ├── LU_computeKernel.cpp │ │ │ ├── LU_image.cpp │ │ │ ├── LU_kernel.cpp │ │ │ ├── LU_solve.cpp │ │ │ ├── MatrixBase_adjoint.cpp │ │ │ ├── MatrixBase_all.cpp │ │ │ ├── MatrixBase_asDiagonal.cpp │ │ │ ├── MatrixBase_block_int_int.cpp │ │ │ ├── MatrixBase_block_int_int_int_int.cpp │ │ │ ├── MatrixBase_cast.cpp │ │ │ ├── MatrixBase_col.cpp │ │ │ ├── MatrixBase_colwise.cpp │ │ │ ├── MatrixBase_computeInverse.cpp │ │ │ ├── MatrixBase_corner_enum_int_int.cpp │ │ │ ├── MatrixBase_cwise.cpp │ │ │ ├── MatrixBase_cwise_const.cpp │ │ │ ├── MatrixBase_diagonal.cpp │ │ │ ├── MatrixBase_end_int.cpp │ │ │ ├── MatrixBase_eval.cpp │ │ │ ├── MatrixBase_extract.cpp │ │ │ ├── MatrixBase_fixedBlock_int_int.cpp │ │ │ ├── MatrixBase_identity.cpp │ │ │ ├── MatrixBase_identity_int_int.cpp │ │ │ ├── MatrixBase_inverse.cpp │ │ │ ├── MatrixBase_isDiagonal.cpp │ │ │ ├── MatrixBase_isIdentity.cpp │ │ │ ├── MatrixBase_isOnes.cpp │ │ │ ├── MatrixBase_isOrthogonal.cpp │ │ │ ├── MatrixBase_isUnitary.cpp │ │ │ ├── MatrixBase_isZero.cpp │ │ │ ├── MatrixBase_lazy.cpp │ │ │ ├── MatrixBase_marked.cpp │ │ │ ├── MatrixBase_minor.cpp │ │ │ ├── MatrixBase_ones.cpp │ │ │ ├── MatrixBase_ones_int.cpp │ │ │ ├── MatrixBase_ones_int_int.cpp │ │ │ ├── MatrixBase_part.cpp │ │ │ ├── MatrixBase_random.cpp │ │ │ ├── MatrixBase_random_int.cpp │ │ │ ├── MatrixBase_random_int_int.cpp │ │ │ ├── MatrixBase_row.cpp │ │ │ ├── MatrixBase_rowwise.cpp │ │ │ ├── MatrixBase_segment_int_int.cpp │ │ │ ├── MatrixBase_set.cpp │ │ │ ├── MatrixBase_setIdentity.cpp │ │ │ ├── MatrixBase_setOnes.cpp │ │ │ ├── MatrixBase_setRandom.cpp │ │ │ ├── MatrixBase_setZero.cpp │ │ │ ├── MatrixBase_start_int.cpp │ │ │ ├── MatrixBase_template_int_end.cpp │ │ │ ├── MatrixBase_template_int_int_corner_enum.cpp │ │ │ ├── MatrixBase_template_int_segment.cpp │ │ │ ├── MatrixBase_template_int_start.cpp │ │ │ ├── MatrixBase_transpose.cpp │ │ │ ├── MatrixBase_zero.cpp │ │ │ ├── MatrixBase_zero_int.cpp │ │ │ ├── MatrixBase_zero_int_int.cpp │ │ │ ├── PartialRedux_count.cpp │ │ │ ├── PartialRedux_maxCoeff.cpp │ │ │ ├── PartialRedux_minCoeff.cpp │ │ │ ├── PartialRedux_norm.cpp │ │ │ ├── PartialRedux_squaredNorm.cpp │ │ │ ├── PartialRedux_sum.cpp │ │ │ ├── Tutorial_commainit_01.cpp │ │ │ ├── Tutorial_commainit_02.cpp │ │ │ ├── class_LU.cpp │ │ │ └── compile_snippet.cpp.in │ │ └── tutorial.cpp │ ├── eigen2.pc.in │ ├── scripts │ │ └── eigen_gen_docs │ ├── src │ │ ├── CMakeLists.txt │ │ ├── Cholesky │ │ │ ├── CMakeLists.txt │ │ │ ├── LDLT.h │ │ │ └── LLT.h │ │ ├── Core │ │ │ ├── Array.h │ │ │ ├── ArrayBase.h │ │ │ ├── ArrayWrapper.h │ │ │ ├── Assign.h │ │ │ ├── BandMatrix.h │ │ │ ├── Block.h │ │ │ ├── BooleanRedux.h │ │ │ ├── CMakeLists.txt │ │ │ ├── CommaInitializer.h │ │ │ ├── CwiseBinaryOp.h │ │ │ ├── CwiseNullaryOp.h │ │ │ ├── CwiseUnaryOp.h │ │ │ ├── CwiseUnaryView.h │ │ │ ├── DenseBase.h │ │ │ ├── DenseCoeffsBase.h │ │ │ ├── DenseStorageBase.h │ │ │ ├── Diagonal.h │ │ │ ├── DiagonalMatrix.h │ │ │ ├── DiagonalProduct.h │ │ │ ├── Dot.h │ │ │ ├── EigenBase.h │ │ │ ├── Flagged.h │ │ │ ├── ForceAlignedAccess.h │ │ │ ├── Functors.h │ │ │ ├── Fuzzy.h │ │ │ ├── GenericPacketMath.h │ │ │ ├── GlobalFunctions.h │ │ │ ├── IO.h │ │ │ ├── Map.h │ │ │ ├── MapBase.h │ │ │ ├── MathFunctions.h │ │ │ ├── Matrix.h │ │ │ ├── MatrixBase.h │ │ │ ├── MatrixStorage.h │ │ │ ├── NestByValue.h │ │ │ ├── NoAlias.h │ │ │ ├── NumTraits.h │ │ │ ├── PermutationMatrix.h │ │ │ ├── Product.h │ │ │ ├── ProductBase.h │ │ │ ├── Random.h │ │ │ ├── Redux.h │ │ │ ├── Replicate.h │ │ │ ├── ReturnByValue.h │ │ │ ├── Reverse.h │ │ │ ├── Select.h │ │ │ ├── SelfAdjointView.h │ │ │ ├── SelfCwiseBinaryOp.h │ │ │ ├── SolveTriangular.h │ │ │ ├── StableNorm.h │ │ │ ├── Stride.h │ │ │ ├── Swap.h │ │ │ ├── Transpose.h │ │ │ ├── Transpositions.h │ │ │ ├── TriangularMatrix.h │ │ │ ├── VectorBlock.h │ │ │ ├── VectorwiseOp.h │ │ │ ├── Visitor.h │ │ │ ├── arch │ │ │ │ ├── AltiVec │ │ │ │ │ ├── CMakeLists.txt │ │ │ │ │ ├── Complex.h │ │ │ │ │ └── PacketMath.h │ │ │ │ ├── CMakeLists.txt │ │ │ │ ├── Default │ │ │ │ │ ├── CMakeLists.txt │ │ │ │ │ └── Settings.h │ │ │ │ ├── NEON │ │ │ │ │ ├── CMakeLists.txt │ │ │ │ │ ├── Complex.h │ │ │ │ │ └── PacketMath.h │ │ │ │ └── SSE │ │ │ │ │ ├── CMakeLists.txt │ │ │ │ │ ├── Complex.h │ │ │ │ │ ├── MathFunctions.h │ │ │ │ │ └── PacketMath.h │ │ │ ├── products │ │ │ │ ├── CMakeLists.txt │ │ │ │ ├── CoeffBasedProduct.h │ │ │ │ ├── GeneralBlockPanelKernel.h │ │ │ │ ├── GeneralMatrixMatrix.h │ │ │ │ ├── GeneralMatrixVector.h │ │ │ │ ├── Parallelizer.h │ │ │ │ ├── SelfadjointMatrixMatrix.h │ │ │ │ ├── SelfadjointMatrixVector.h │ │ │ │ ├── SelfadjointProduct.h │ │ │ │ ├── SelfadjointRank2Update.h │ │ │ │ ├── TriangularMatrixMatrix.h │ │ │ │ ├── TriangularMatrixVector.h │ │ │ │ └── TriangularSolverMatrix.h │ │ │ └── util │ │ │ │ ├── BlasUtil.h │ │ │ │ ├── CMakeLists.txt │ │ │ │ ├── Constants.h │ │ │ │ ├── DisableMSVCWarnings.h │ │ │ │ ├── EnableMSVCWarnings.h │ │ │ │ ├── ForwardDeclarations.h │ │ │ │ ├── Macros.h │ │ │ │ ├── Memory.h │ │ │ │ ├── Meta.h │ │ │ │ ├── StaticAssert.h │ │ │ │ └── XprHelper.h │ │ ├── Eigen2Support │ │ │ ├── Block.h │ │ │ ├── CMakeLists.txt │ │ │ ├── Cwise.h │ │ │ ├── CwiseOperators.h │ │ │ ├── Lazy.h │ │ │ ├── Minor.h │ │ │ ├── TriangularSolver.h │ │ │ └── VectorBlock.h │ │ ├── Eigenvalues │ │ │ ├── CMakeLists.txt │ │ │ ├── ComplexEigenSolver.h │ │ │ ├── ComplexSchur.h │ │ │ ├── EigenSolver.h │ │ │ ├── EigenvaluesCommon.h │ │ │ ├── GeneralizedSelfAdjointEigenSolver.h │ │ │ ├── HessenbergDecomposition.h │ │ │ ├── MatrixBaseEigenvalues.h │ │ │ ├── RealSchur.h │ │ │ ├── SelfAdjointEigenSolver.h │ │ │ └── Tridiagonalization.h │ │ ├── Geometry │ │ │ ├── AlignedBox.h │ │ │ ├── AngleAxis.h │ │ │ ├── CMakeLists.txt │ │ │ ├── EulerAngles.h │ │ │ ├── Homogeneous.h │ │ │ ├── Hyperplane.h │ │ │ ├── OrthoMethods.h │ │ │ ├── ParametrizedLine.h │ │ │ ├── Quaternion.h │ │ │ ├── Rotation2D.h │ │ │ ├── RotationBase.h │ │ │ ├── Scaling.h │ │ │ ├── Transform.h │ │ │ ├── Translation.h │ │ │ ├── Umeyama.h │ │ │ └── arch │ │ │ │ ├── CMakeLists.txt │ │ │ │ └── Geometry_SSE.h │ │ ├── Householder │ │ │ ├── BlockHouseholder.h │ │ │ ├── CMakeLists.txt │ │ │ ├── Householder.h │ │ │ └── HouseholderSequence.h │ │ ├── Jacobi │ │ │ ├── CMakeLists.txt │ │ │ └── Jacobi.h │ │ ├── LU │ │ │ ├── CMakeLists.txt │ │ │ ├── Determinant.h │ │ │ ├── FullPivLU.h │ │ │ ├── Inverse.h │ │ │ ├── PartialPivLU.h │ │ │ └── arch │ │ │ │ ├── CMakeLists.txt │ │ │ │ └── Inverse_SSE.h │ │ ├── QR │ │ │ ├── CMakeLists.txt │ │ │ ├── ColPivHouseholderQR.h │ │ │ ├── FullPivHouseholderQR.h │ │ │ └── HouseholderQR.h │ │ ├── SVD │ │ │ ├── CMakeLists.txt │ │ │ ├── JacobiSVD.h │ │ │ └── UpperBidiagonalization.h │ │ ├── Sparse │ │ │ ├── AmbiVector.h │ │ │ ├── CMakeLists.txt │ │ │ ├── CompressedStorage.h │ │ │ ├── CoreIterators.h │ │ │ ├── DynamicSparseMatrix.h │ │ │ ├── MappedSparseMatrix.h │ │ │ ├── SparseAssign.h │ │ │ ├── SparseBlock.h │ │ │ ├── SparseCwiseBinaryOp.h │ │ │ ├── SparseCwiseUnaryOp.h │ │ │ ├── SparseDenseProduct.h │ │ │ ├── SparseDiagonalProduct.h │ │ │ ├── SparseDot.h │ │ │ ├── SparseFuzzy.h │ │ │ ├── SparseMatrix.h │ │ │ ├── SparseMatrixBase.h │ │ │ ├── SparseProduct.h │ │ │ ├── SparseRedux.h │ │ │ ├── SparseSelfAdjointView.h │ │ │ ├── SparseSparseProduct.h │ │ │ ├── SparseTranspose.h │ │ │ ├── SparseTriangularView.h │ │ │ ├── SparseUtil.h │ │ │ ├── SparseVector.h │ │ │ ├── SparseView.h │ │ │ └── TriangularSolver.h │ │ ├── StlSupport │ │ │ ├── CMakeLists.txt │ │ │ ├── StdDeque.h │ │ │ ├── StdList.h │ │ │ ├── StdVector.h │ │ │ └── details.h │ │ ├── misc │ │ │ ├── CMakeLists.txt │ │ │ ├── Image.h │ │ │ ├── Kernel.h │ │ │ └── Solve.h │ │ └── plugins │ │ │ ├── ArrayCwiseBinaryOps.h │ │ │ ├── ArrayCwiseUnaryOps.h │ │ │ ├── BlockMethods.h │ │ │ ├── CMakeLists.txt │ │ │ ├── CommonCwiseBinaryOps.h │ │ │ ├── CommonCwiseUnaryOps.h │ │ │ ├── MatrixCwiseBinaryOps.h │ │ │ └── MatrixCwiseUnaryOps.h │ ├── test │ │ ├── CMakeLists.txt │ │ ├── adjoint.cpp │ │ ├── alignedbox.cpp │ │ ├── array.cpp │ │ ├── basicstuff.cpp │ │ ├── bug_132.cpp │ │ ├── cholesky.cpp │ │ ├── commainitializer.cpp │ │ ├── cwiseop.cpp │ │ ├── determinant.cpp │ │ ├── dynalloc.cpp │ │ ├── eigensolver.cpp │ │ ├── first_aligned.cpp │ │ ├── geometry.cpp │ │ ├── gsl_helper.h │ │ ├── hyperplane.cpp │ │ ├── inverse.cpp │ │ ├── linearstructure.cpp │ │ ├── lu.cpp │ │ ├── main.h │ │ ├── map.cpp │ │ ├── meta.cpp │ │ ├── miscmatrices.cpp │ │ ├── mixingtypes.cpp │ │ ├── newstdvector.cpp │ │ ├── nomalloc.cpp │ │ ├── packetmath.cpp │ │ ├── parametrizedline.cpp │ │ ├── prec_inverse_4x4.cpp │ │ ├── product.h │ │ ├── product_large.cpp │ │ ├── product_small.cpp │ │ ├── qr.cpp │ │ ├── qtvector.cpp │ │ ├── regression.cpp │ │ ├── runtest.sh │ │ ├── sizeof.cpp │ │ ├── smallvectors.cpp │ │ ├── sparse.h │ │ ├── sparse_basic.cpp │ │ ├── sparse_product.cpp │ │ ├── sparse_solvers.cpp │ │ ├── sparse_vector.cpp │ │ ├── stdvector.cpp │ │ ├── submatrices.cpp │ │ ├── sum.cpp │ │ ├── svd.cpp │ │ ├── swap.cpp │ │ ├── testsuite.cmake │ │ ├── triangular.cpp │ │ ├── unalignedassert.cpp │ │ ├── vectorization_logic.cpp │ │ └── visitor.cpp │ └── unsupported │ │ ├── CMakeLists.txt │ │ └── Eigen │ │ ├── CMakeLists.txt │ │ ├── IterativeSolvers │ │ └── src │ │ ├── CMakeLists.txt │ │ └── IterativeSolvers │ │ ├── CMakeLists.txt │ │ ├── ConstrainedConjGrad.h │ │ └── IterationController.h ├── alglib │ ├── manual.cpp.html │ ├── src │ │ ├── CMakeLists.txt │ │ ├── alglibinternal.cpp │ │ ├── alglibinternal.h │ │ ├── alglibmisc.cpp │ │ ├── alglibmisc.h │ │ ├── ap.cpp │ │ ├── ap.h │ │ ├── dataanalysis.cpp │ │ ├── dataanalysis.h │ │ ├── diffequations.cpp │ │ ├── diffequations.h │ │ ├── fasttransforms.cpp │ │ ├── fasttransforms.h │ │ ├── integration.cpp │ │ ├── integration.h │ │ ├── interpolation.cpp │ │ ├── interpolation.h │ │ ├── linalg.cpp │ │ ├── linalg.h │ │ ├── optimization.cpp │ │ ├── optimization.h │ │ ├── solvers.cpp │ │ ├── solvers.h │ │ ├── specialfunctions.cpp │ │ ├── specialfunctions.h │ │ ├── statistics.cpp │ │ ├── statistics.h │ │ └── stdafx.h │ └── tests │ │ ├── test_c.cpp │ │ └── test_i.cpp ├── csv_parser │ ├── CMakeLists.txt │ ├── csv_parser.cpp │ ├── csv_parser.hpp │ └── include │ │ └── csv_parser │ │ └── csv_parser.hpp ├── googletest-read-only │ ├── .svn │ │ ├── all-wcprops │ │ ├── entries │ │ └── text-base │ │ │ ├── CHANGES.svn-base │ │ │ ├── CMakeLists.txt.svn-base │ │ │ ├── CONTRIBUTORS.svn-base │ │ │ ├── COPYING.svn-base │ │ │ ├── Makefile.am.svn-base │ │ │ ├── README.svn-base │ │ │ └── configure.ac.svn-base │ ├── CHANGES │ ├── CMakeLists.txt │ ├── CONTRIBUTORS │ ├── COPYING │ ├── Makefile.am │ ├── README │ ├── build-aux │ │ ├── .keep │ │ └── .svn │ │ │ ├── all-wcprops │ │ │ ├── entries │ │ │ └── text-base │ │ │ └── .keep.svn-base │ ├── cmake │ │ ├── .svn │ │ │ ├── all-wcprops │ │ │ ├── entries │ │ │ └── text-base │ │ │ │ └── internal_utils.cmake.svn-base │ │ └── internal_utils.cmake │ ├── codegear │ │ ├── .svn │ │ │ ├── all-wcprops │ │ │ ├── entries │ │ │ ├── prop-base │ │ │ │ ├── gtest.cbproj.svn-base │ │ │ │ ├── gtest.groupproj.svn-base │ │ │ │ ├── gtest_all.cc.svn-base │ │ │ │ ├── gtest_link.cc.svn-base │ │ │ │ ├── gtest_main.cbproj.svn-base │ │ │ │ └── gtest_unittest.cbproj.svn-base │ │ │ └── text-base │ │ │ │ ├── gtest.cbproj.svn-base │ │ │ │ ├── gtest.groupproj.svn-base │ │ │ │ ├── gtest_all.cc.svn-base │ │ │ │ ├── gtest_link.cc.svn-base │ │ │ │ ├── gtest_main.cbproj.svn-base │ │ │ │ └── gtest_unittest.cbproj.svn-base │ │ ├── gtest.cbproj │ │ ├── gtest.groupproj │ │ ├── gtest_all.cc │ │ ├── gtest_link.cc │ │ ├── gtest_main.cbproj │ │ └── gtest_unittest.cbproj │ ├── configure.ac │ ├── include │ │ ├── .svn │ │ │ ├── all-wcprops │ │ │ └── entries │ │ └── gtest │ │ │ ├── .svn │ │ │ ├── all-wcprops │ │ │ ├── entries │ │ │ └── text-base │ │ │ │ ├── gtest-death-test.h.svn-base │ │ │ │ ├── gtest-message.h.svn-base │ │ │ │ ├── gtest-param-test.h.pump.svn-base │ │ │ │ ├── gtest-param-test.h.svn-base │ │ │ │ ├── gtest-printers.h.svn-base │ │ │ │ ├── gtest-spi.h.svn-base │ │ │ │ ├── gtest-test-part.h.svn-base │ │ │ │ ├── gtest-typed-test.h.svn-base │ │ │ │ ├── gtest.h.svn-base │ │ │ │ ├── gtest_pred_impl.h.svn-base │ │ │ │ └── gtest_prod.h.svn-base │ │ │ ├── gtest-death-test.h │ │ │ ├── gtest-message.h │ │ │ ├── gtest-param-test.h │ │ │ ├── gtest-param-test.h.pump │ │ │ ├── gtest-printers.h │ │ │ ├── gtest-spi.h │ │ │ ├── gtest-test-part.h │ │ │ ├── gtest-typed-test.h │ │ │ ├── gtest.h │ │ │ ├── gtest_pred_impl.h │ │ │ ├── gtest_prod.h │ │ │ └── internal │ │ │ ├── .svn │ │ │ ├── all-wcprops │ │ │ ├── entries │ │ │ └── text-base │ │ │ │ ├── gtest-death-test-internal.h.svn-base │ │ │ │ ├── gtest-filepath.h.svn-base │ │ │ │ ├── gtest-internal.h.svn-base │ │ │ │ ├── gtest-linked_ptr.h.svn-base │ │ │ │ ├── gtest-param-util-generated.h.pump.svn-base │ │ │ │ ├── gtest-param-util-generated.h.svn-base │ │ │ │ ├── gtest-param-util.h.svn-base │ │ │ │ ├── gtest-port.h.svn-base │ │ │ │ ├── gtest-string.h.svn-base │ │ │ │ ├── gtest-tuple.h.pump.svn-base │ │ │ │ ├── gtest-tuple.h.svn-base │ │ │ │ ├── gtest-type-util.h.pump.svn-base │ │ │ │ └── gtest-type-util.h.svn-base │ │ │ ├── gtest-death-test-internal.h │ │ │ ├── gtest-filepath.h │ │ │ ├── gtest-internal.h │ │ │ ├── gtest-linked_ptr.h │ │ │ ├── gtest-param-util-generated.h │ │ │ ├── gtest-param-util-generated.h.pump │ │ │ ├── gtest-param-util.h │ │ │ ├── gtest-port.h │ │ │ ├── gtest-string.h │ │ │ ├── gtest-tuple.h │ │ │ ├── gtest-tuple.h.pump │ │ │ ├── gtest-type-util.h │ │ │ └── gtest-type-util.h.pump │ ├── m4 │ │ ├── .svn │ │ │ ├── all-wcprops │ │ │ ├── entries │ │ │ └── text-base │ │ │ │ ├── acx_pthread.m4.svn-base │ │ │ │ └── gtest.m4.svn-base │ │ ├── acx_pthread.m4 │ │ └── gtest.m4 │ ├── make │ │ ├── .svn │ │ │ ├── all-wcprops │ │ │ ├── entries │ │ │ └── text-base │ │ │ │ └── Makefile.svn-base │ │ └── Makefile │ ├── msvc │ │ ├── .svn │ │ │ ├── all-wcprops │ │ │ ├── entries │ │ │ ├── prop-base │ │ │ │ ├── gtest-md.sln.svn-base │ │ │ │ ├── gtest-md.vcproj.svn-base │ │ │ │ ├── gtest.sln.svn-base │ │ │ │ ├── gtest.vcproj.svn-base │ │ │ │ ├── gtest_main-md.vcproj.svn-base │ │ │ │ ├── gtest_main.vcproj.svn-base │ │ │ │ ├── gtest_prod_test-md.vcproj.svn-base │ │ │ │ ├── gtest_prod_test.vcproj.svn-base │ │ │ │ ├── gtest_unittest-md.vcproj.svn-base │ │ │ │ └── gtest_unittest.vcproj.svn-base │ │ │ └── text-base │ │ │ │ ├── gtest-md.sln.svn-base │ │ │ │ ├── gtest-md.vcproj.svn-base │ │ │ │ ├── gtest.sln.svn-base │ │ │ │ ├── gtest.vcproj.svn-base │ │ │ │ ├── gtest_main-md.vcproj.svn-base │ │ │ │ ├── gtest_main.vcproj.svn-base │ │ │ │ ├── gtest_prod_test-md.vcproj.svn-base │ │ │ │ ├── gtest_prod_test.vcproj.svn-base │ │ │ │ ├── gtest_unittest-md.vcproj.svn-base │ │ │ │ └── gtest_unittest.vcproj.svn-base │ │ ├── gtest-md.sln │ │ ├── gtest-md.vcproj │ │ ├── gtest.sln │ │ ├── gtest.vcproj │ │ ├── gtest_main-md.vcproj │ │ ├── gtest_main.vcproj │ │ ├── gtest_prod_test-md.vcproj │ │ ├── gtest_prod_test.vcproj │ │ ├── gtest_unittest-md.vcproj │ │ └── gtest_unittest.vcproj │ ├── samples │ │ ├── .svn │ │ │ ├── all-wcprops │ │ │ ├── entries │ │ │ └── text-base │ │ │ │ ├── prime_tables.h.svn-base │ │ │ │ ├── sample1.cc.svn-base │ │ │ │ ├── sample1.h.svn-base │ │ │ │ ├── sample10_unittest.cc.svn-base │ │ │ │ ├── sample1_unittest.cc.svn-base │ │ │ │ ├── sample2.cc.svn-base │ │ │ │ ├── sample2.h.svn-base │ │ │ │ ├── sample2_unittest.cc.svn-base │ │ │ │ ├── sample3-inl.h.svn-base │ │ │ │ ├── sample3_unittest.cc.svn-base │ │ │ │ ├── sample4.cc.svn-base │ │ │ │ ├── sample4.h.svn-base │ │ │ │ ├── sample4_unittest.cc.svn-base │ │ │ │ ├── sample5_unittest.cc.svn-base │ │ │ │ ├── sample6_unittest.cc.svn-base │ │ │ │ ├── sample7_unittest.cc.svn-base │ │ │ │ ├── sample8_unittest.cc.svn-base │ │ │ │ └── sample9_unittest.cc.svn-base │ │ ├── prime_tables.h │ │ ├── sample1.cc │ │ ├── sample1.h │ │ ├── sample10_unittest.cc │ │ ├── sample1_unittest.cc │ │ ├── sample2.cc │ │ ├── sample2.h │ │ ├── sample2_unittest.cc │ │ ├── sample3-inl.h │ │ ├── sample3_unittest.cc │ │ ├── sample4.cc │ │ ├── sample4.h │ │ ├── sample4_unittest.cc │ │ ├── sample5_unittest.cc │ │ ├── sample6_unittest.cc │ │ ├── sample7_unittest.cc │ │ ├── sample8_unittest.cc │ │ └── sample9_unittest.cc │ ├── scons │ │ └── .svn │ │ │ ├── all-wcprops │ │ │ └── entries │ ├── scripts │ │ ├── .svn │ │ │ ├── all-wcprops │ │ │ ├── entries │ │ │ ├── prop-base │ │ │ │ ├── fuse_gtest_files.py.svn-base │ │ │ │ ├── gen_gtest_pred_impl.py.svn-base │ │ │ │ ├── gtest-config.in.svn-base │ │ │ │ ├── pump.py.svn-base │ │ │ │ ├── upload.py.svn-base │ │ │ │ └── upload_gtest.py.svn-base │ │ │ └── text-base │ │ │ │ ├── fuse_gtest_files.py.svn-base │ │ │ │ ├── gen_gtest_pred_impl.py.svn-base │ │ │ │ ├── gtest-config.in.svn-base │ │ │ │ ├── pump.py.svn-base │ │ │ │ ├── upload.py.svn-base │ │ │ │ └── upload_gtest.py.svn-base │ │ ├── fuse_gtest_files.py │ │ ├── gen_gtest_pred_impl.py │ │ ├── gtest-config.in │ │ ├── pump.py │ │ ├── test │ │ │ ├── .svn │ │ │ │ ├── all-wcprops │ │ │ │ ├── entries │ │ │ │ └── text-base │ │ │ │ │ └── Makefile.svn-base │ │ │ └── Makefile │ │ ├── upload.py │ │ └── upload_gtest.py │ ├── src │ │ ├── .svn │ │ │ ├── all-wcprops │ │ │ ├── entries │ │ │ └── text-base │ │ │ │ ├── gtest-all.cc.svn-base │ │ │ │ ├── gtest-death-test.cc.svn-base │ │ │ │ ├── gtest-filepath.cc.svn-base │ │ │ │ ├── gtest-internal-inl.h.svn-base │ │ │ │ ├── gtest-port.cc.svn-base │ │ │ │ ├── gtest-printers.cc.svn-base │ │ │ │ ├── gtest-test-part.cc.svn-base │ │ │ │ ├── gtest-typed-test.cc.svn-base │ │ │ │ ├── gtest.cc.svn-base │ │ │ │ └── gtest_main.cc.svn-base │ │ ├── gtest-all.cc │ │ ├── gtest-death-test.cc │ │ ├── gtest-filepath.cc │ │ ├── gtest-internal-inl.h │ │ ├── gtest-port.cc │ │ ├── gtest-printers.cc │ │ ├── gtest-test-part.cc │ │ ├── gtest-typed-test.cc │ │ ├── gtest.cc │ │ └── gtest_main.cc │ ├── test │ │ ├── .svn │ │ │ ├── all-wcprops │ │ │ ├── entries │ │ │ ├── prop-base │ │ │ │ ├── gtest_break_on_failure_unittest.py.svn-base │ │ │ │ ├── gtest_catch_exceptions_test.py.svn-base │ │ │ │ ├── gtest_color_test.py.svn-base │ │ │ │ ├── gtest_env_var_test.py.svn-base │ │ │ │ ├── gtest_filter_unittest.py.svn-base │ │ │ │ ├── gtest_help_test.py.svn-base │ │ │ │ ├── gtest_list_tests_unittest.py.svn-base │ │ │ │ ├── gtest_nc_test.py.svn-base │ │ │ │ ├── gtest_output_test.py.svn-base │ │ │ │ ├── gtest_shuffle_test.py.svn-base │ │ │ │ ├── gtest_test_utils.py.svn-base │ │ │ │ ├── gtest_throw_on_failure_test.py.svn-base │ │ │ │ ├── gtest_uninitialized_test.py.svn-base │ │ │ │ ├── gtest_xml_outfiles_test.py.svn-base │ │ │ │ ├── gtest_xml_output_unittest.py.svn-base │ │ │ │ └── gtest_xml_test_utils.py.svn-base │ │ │ └── text-base │ │ │ │ ├── gtest-death-test_ex_test.cc.svn-base │ │ │ │ ├── gtest-death-test_test.cc.svn-base │ │ │ │ ├── gtest-filepath_test.cc.svn-base │ │ │ │ ├── gtest-linked_ptr_test.cc.svn-base │ │ │ │ ├── gtest-listener_test.cc.svn-base │ │ │ │ ├── gtest-message_test.cc.svn-base │ │ │ │ ├── gtest-options_test.cc.svn-base │ │ │ │ ├── gtest-param-test2_test.cc.svn-base │ │ │ │ ├── gtest-param-test_test.cc.svn-base │ │ │ │ ├── gtest-param-test_test.h.svn-base │ │ │ │ ├── gtest-port_test.cc.svn-base │ │ │ │ ├── gtest-printers_test.cc.svn-base │ │ │ │ ├── gtest-test-part_test.cc.svn-base │ │ │ │ ├── gtest-tuple_test.cc.svn-base │ │ │ │ ├── gtest-typed-test2_test.cc.svn-base │ │ │ │ ├── gtest-typed-test_test.cc.svn-base │ │ │ │ ├── gtest-typed-test_test.h.svn-base │ │ │ │ ├── gtest-unittest-api_test.cc.svn-base │ │ │ │ ├── gtest_all_test.cc.svn-base │ │ │ │ ├── gtest_break_on_failure_unittest.py.svn-base │ │ │ │ ├── gtest_break_on_failure_unittest_.cc.svn-base │ │ │ │ ├── gtest_catch_exceptions_test.py.svn-base │ │ │ │ ├── gtest_catch_exceptions_test_.cc.svn-base │ │ │ │ ├── gtest_color_test.py.svn-base │ │ │ │ ├── gtest_color_test_.cc.svn-base │ │ │ │ ├── gtest_env_var_test.py.svn-base │ │ │ │ ├── gtest_env_var_test_.cc.svn-base │ │ │ │ ├── gtest_environment_test.cc.svn-base │ │ │ │ ├── gtest_filter_unittest.py.svn-base │ │ │ │ ├── gtest_filter_unittest_.cc.svn-base │ │ │ │ ├── gtest_help_test.py.svn-base │ │ │ │ ├── gtest_help_test_.cc.svn-base │ │ │ │ ├── gtest_list_tests_unittest.py.svn-base │ │ │ │ ├── gtest_list_tests_unittest_.cc.svn-base │ │ │ │ ├── gtest_main_unittest.cc.svn-base │ │ │ │ ├── gtest_nc.cc.svn-base │ │ │ │ ├── gtest_nc_test.py.svn-base │ │ │ │ ├── gtest_no_test_unittest.cc.svn-base │ │ │ │ ├── gtest_output_test.py.svn-base │ │ │ │ ├── gtest_output_test_.cc.svn-base │ │ │ │ ├── gtest_output_test_golden_lin.txt.svn-base │ │ │ │ ├── gtest_pred_impl_unittest.cc.svn-base │ │ │ │ ├── gtest_prod_test.cc.svn-base │ │ │ │ ├── gtest_repeat_test.cc.svn-base │ │ │ │ ├── gtest_shuffle_test.py.svn-base │ │ │ │ ├── gtest_shuffle_test_.cc.svn-base │ │ │ │ ├── gtest_sole_header_test.cc.svn-base │ │ │ │ ├── gtest_stress_test.cc.svn-base │ │ │ │ ├── gtest_test_utils.py.svn-base │ │ │ │ ├── gtest_throw_on_failure_ex_test.cc.svn-base │ │ │ │ ├── gtest_throw_on_failure_test.py.svn-base │ │ │ │ ├── gtest_throw_on_failure_test_.cc.svn-base │ │ │ │ ├── gtest_uninitialized_test.py.svn-base │ │ │ │ ├── gtest_uninitialized_test_.cc.svn-base │ │ │ │ ├── gtest_unittest.cc.svn-base │ │ │ │ ├── gtest_xml_outfile1_test_.cc.svn-base │ │ │ │ ├── gtest_xml_outfile2_test_.cc.svn-base │ │ │ │ ├── gtest_xml_outfiles_test.py.svn-base │ │ │ │ ├── gtest_xml_output_unittest.py.svn-base │ │ │ │ ├── gtest_xml_output_unittest_.cc.svn-base │ │ │ │ ├── gtest_xml_test_utils.py.svn-base │ │ │ │ ├── production.cc.svn-base │ │ │ │ └── production.h.svn-base │ │ ├── gtest-death-test_ex_test.cc │ │ ├── gtest-death-test_test.cc │ │ ├── gtest-filepath_test.cc │ │ ├── gtest-linked_ptr_test.cc │ │ ├── gtest-listener_test.cc │ │ ├── gtest-message_test.cc │ │ ├── gtest-options_test.cc │ │ ├── gtest-param-test2_test.cc │ │ ├── gtest-param-test_test.cc │ │ ├── gtest-param-test_test.h │ │ ├── gtest-port_test.cc │ │ ├── gtest-printers_test.cc │ │ ├── gtest-test-part_test.cc │ │ ├── gtest-tuple_test.cc │ │ ├── gtest-typed-test2_test.cc │ │ ├── gtest-typed-test_test.cc │ │ ├── gtest-typed-test_test.h │ │ ├── gtest-unittest-api_test.cc │ │ ├── gtest_all_test.cc │ │ ├── gtest_break_on_failure_unittest.py │ │ ├── gtest_break_on_failure_unittest_.cc │ │ ├── gtest_catch_exceptions_test.py │ │ ├── gtest_catch_exceptions_test_.cc │ │ ├── gtest_color_test.py │ │ ├── gtest_color_test_.cc │ │ ├── gtest_env_var_test.py │ │ ├── gtest_env_var_test_.cc │ │ ├── gtest_environment_test.cc │ │ ├── gtest_filter_unittest.py │ │ ├── gtest_filter_unittest_.cc │ │ ├── gtest_help_test.py │ │ ├── gtest_help_test_.cc │ │ ├── gtest_list_tests_unittest.py │ │ ├── gtest_list_tests_unittest_.cc │ │ ├── gtest_main_unittest.cc │ │ ├── gtest_nc.cc │ │ ├── gtest_nc_test.py │ │ ├── gtest_no_test_unittest.cc │ │ ├── gtest_output_test.py │ │ ├── gtest_output_test_.cc │ │ ├── gtest_output_test_golden_lin.txt │ │ ├── gtest_pred_impl_unittest.cc │ │ ├── gtest_prod_test.cc │ │ ├── gtest_repeat_test.cc │ │ ├── gtest_shuffle_test.py │ │ ├── gtest_shuffle_test_.cc │ │ ├── gtest_sole_header_test.cc │ │ ├── gtest_stress_test.cc │ │ ├── gtest_test_utils.py │ │ ├── gtest_throw_on_failure_ex_test.cc │ │ ├── gtest_throw_on_failure_test.py │ │ ├── gtest_throw_on_failure_test_.cc │ │ ├── gtest_uninitialized_test.py │ │ ├── gtest_uninitialized_test_.cc │ │ ├── gtest_unittest.cc │ │ ├── gtest_xml_outfile1_test_.cc │ │ ├── gtest_xml_outfile2_test_.cc │ │ ├── gtest_xml_outfiles_test.py │ │ ├── gtest_xml_output_unittest.py │ │ ├── gtest_xml_output_unittest_.cc │ │ ├── gtest_xml_test_utils.py │ │ ├── production.cc │ │ └── production.h │ └── xcode │ │ ├── .svn │ │ ├── all-wcprops │ │ └── entries │ │ ├── Config │ │ ├── .svn │ │ │ ├── all-wcprops │ │ │ ├── entries │ │ │ └── text-base │ │ │ │ ├── DebugProject.xcconfig.svn-base │ │ │ │ ├── FrameworkTarget.xcconfig.svn-base │ │ │ │ ├── General.xcconfig.svn-base │ │ │ │ ├── ReleaseProject.xcconfig.svn-base │ │ │ │ ├── StaticLibraryTarget.xcconfig.svn-base │ │ │ │ └── TestTarget.xcconfig.svn-base │ │ ├── DebugProject.xcconfig │ │ ├── FrameworkTarget.xcconfig │ │ ├── General.xcconfig │ │ ├── ReleaseProject.xcconfig │ │ ├── StaticLibraryTarget.xcconfig │ │ └── TestTarget.xcconfig │ │ ├── Resources │ │ ├── .svn │ │ │ ├── all-wcprops │ │ │ ├── entries │ │ │ └── text-base │ │ │ │ └── Info.plist.svn-base │ │ └── Info.plist │ │ ├── Samples │ │ ├── .svn │ │ │ ├── all-wcprops │ │ │ └── entries │ │ └── FrameworkSample │ │ │ ├── .svn │ │ │ ├── all-wcprops │ │ │ ├── entries │ │ │ └── text-base │ │ │ │ ├── Info.plist.svn-base │ │ │ │ ├── runtests.sh.svn-base │ │ │ │ ├── widget.cc.svn-base │ │ │ │ ├── widget.h.svn-base │ │ │ │ └── widget_test.cc.svn-base │ │ │ ├── Info.plist │ │ │ ├── WidgetFramework.xcodeproj │ │ │ ├── .svn │ │ │ │ ├── all-wcprops │ │ │ │ ├── entries │ │ │ │ └── text-base │ │ │ │ │ └── project.pbxproj.svn-base │ │ │ └── project.pbxproj │ │ │ ├── runtests.sh │ │ │ ├── widget.cc │ │ │ ├── widget.h │ │ │ └── widget_test.cc │ │ ├── Scripts │ │ ├── .svn │ │ │ ├── all-wcprops │ │ │ ├── entries │ │ │ └── text-base │ │ │ │ ├── runtests.sh.svn-base │ │ │ │ └── versiongenerate.py.svn-base │ │ ├── runtests.sh │ │ └── versiongenerate.py │ │ └── gtest.xcodeproj │ │ ├── .svn │ │ ├── all-wcprops │ │ ├── entries │ │ └── text-base │ │ │ └── project.pbxproj.svn-base │ │ ├── mz2.mode1v3 │ │ ├── mz2.pbxuser │ │ └── project.pbxproj ├── gtest.framework │ ├── Headers │ ├── Resources │ ├── Versions │ │ ├── A │ │ │ ├── Headers │ │ │ │ ├── gtest-death-test.h │ │ │ │ ├── gtest-message.h │ │ │ │ ├── gtest-param-test.h │ │ │ │ ├── gtest-printers.h │ │ │ │ ├── gtest-spi.h │ │ │ │ ├── gtest-test-part.h │ │ │ │ ├── gtest-typed-test.h │ │ │ │ ├── gtest.h │ │ │ │ ├── gtest_pred_impl.h │ │ │ │ ├── gtest_prod.h │ │ │ │ └── internal │ │ │ │ │ ├── gtest-death-test-internal.h │ │ │ │ │ ├── gtest-filepath.h │ │ │ │ │ ├── gtest-internal.h │ │ │ │ │ ├── gtest-linked_ptr.h │ │ │ │ │ ├── gtest-param-util-generated.h │ │ │ │ │ ├── gtest-param-util.h │ │ │ │ │ ├── gtest-port.h │ │ │ │ │ ├── gtest-string.h │ │ │ │ │ ├── gtest-tuple.h │ │ │ │ │ └── gtest-type-util.h │ │ │ ├── Resources │ │ │ │ ├── CHANGES │ │ │ │ ├── CONTRIBUTORS │ │ │ │ ├── COPYING │ │ │ │ ├── Info.plist │ │ │ │ ├── README │ │ │ │ └── libgtest_main.a │ │ │ └── gtest │ │ └── Current │ └── gtest ├── tclap │ ├── Arg.h │ ├── ArgException.h │ ├── ArgTraits.h │ ├── CmdLine.h │ ├── CmdLineInterface.h │ ├── CmdLineOutput.h │ ├── Constraint.h │ ├── DocBookOutput.h │ ├── HelpVisitor.h │ ├── IgnoreRestVisitor.h │ ├── Makefile.am │ ├── Makefile.in │ ├── MultiArg.h │ ├── MultiSwitchArg.h │ ├── OptionalUnlabeledTracker.h │ ├── StandardTraits.h │ ├── StdOutput.h │ ├── SwitchArg.h │ ├── UnlabeledMultiArg.h │ ├── UnlabeledValueArg.h │ ├── ValueArg.h │ ├── ValuesConstraint.h │ ├── VersionVisitor.h │ ├── Visitor.h │ ├── XorHandler.h │ └── ZshCompletionOutput.h └── yaml-cpp │ ├── CMakeLists.txt │ ├── include │ ├── conversion.h │ ├── emitter.h │ ├── emittermanip.h │ ├── exceptions.h │ ├── iterator.h │ ├── mark.h │ ├── node.h │ ├── nodeimpl.h │ ├── nodereadimpl.h │ ├── nodeutil.h │ ├── noncopyable.h │ ├── null.h │ ├── ostream.h │ ├── parser.h │ ├── stlemitter.h │ ├── stlnode.h │ ├── traits.h │ └── yaml.h │ ├── install.txt │ ├── license.txt │ ├── parse.vcproj │ ├── src │ ├── aliascontent.cpp │ ├── aliascontent.h │ ├── content.h │ ├── conversion.cpp │ ├── emitter.cpp │ ├── emitterstate.cpp │ ├── emitterstate.h │ ├── emitterutils.cpp │ ├── emitterutils.h │ ├── exp.cpp │ ├── exp.h │ ├── indentation.h │ ├── iterator.cpp │ ├── iterpriv.h │ ├── ltnode.h │ ├── map.cpp │ ├── map.h │ ├── node.cpp │ ├── null.cpp │ ├── ostream.cpp │ ├── parser.cpp │ ├── parserstate.cpp │ ├── parserstate.h │ ├── regex.cpp │ ├── regex.h │ ├── regeximpl.h │ ├── scalar.cpp │ ├── scalar.h │ ├── scanner.cpp │ ├── scanner.h │ ├── scanscalar.cpp │ ├── scanscalar.h │ ├── scantag.cpp │ ├── scantag.h │ ├── scantoken.cpp │ ├── sequence.cpp │ ├── sequence.h │ ├── setting.h │ ├── simplekey.cpp │ ├── stream.cpp │ ├── stream.h │ ├── streamcharsource.h │ ├── stringsource.h │ ├── tag.cpp │ ├── tag.h │ └── token.h │ ├── test.vcproj │ ├── test │ ├── CMakeLists.txt │ ├── emittertests.cpp │ ├── emittertests.h │ ├── main.cpp │ ├── parsertests.cpp │ ├── parsertests.h │ ├── spectests.cpp │ ├── spectests.h │ ├── tests.cpp │ └── tests.h │ ├── util │ ├── CMakeLists.txt │ └── parse.cpp │ ├── yaml-cpp.pc.cmake │ ├── yamlcpp.sln │ └── yamlcpp.vcproj ├── INSTALL.txt ├── LICENSE ├── R ├── CMakeLists.txt ├── Makefile ├── Makevars ├── lib ├── peer.i ├── peer │ ├── DESCRIPTION │ ├── NAMESPACE │ ├── R │ │ ├── firstlib.R │ │ └── plot.R │ ├── man │ │ └── peer-package.Rd │ └── src │ │ └── Makevars └── swig_typemaps.i ├── README ├── README.txt ├── TODO ├── cmake ├── FindEigen.cmake ├── FindEigen2.cmake ├── FindNumpy.cmake ├── FindPythonInst.cmake ├── FindPythonInterpWhich.cmake ├── FindPythonLibsDist.cmake ├── FindR.cmake └── FindRInterpWhich.cmake ├── cran ├── create_source_package.sh ├── install_package.sh ├── peer_template │ ├── R │ │ └── firstlib.R │ └── src │ │ └── Makevars └── update_swig.sh ├── examples ├── README.txt ├── brem_data │ ├── expression.csv │ ├── genotype.csv │ ├── yeastract_expr.csv │ └── yeastract_prior.csv ├── brem_exploration.R ├── data │ ├── ._brem_expr.csv │ ├── ._brem_genotype.csv │ ├── ._brem_yeastract_expr.csv │ ├── ._brem_yeastract_prior.csv │ ├── ._covs.csv │ ├── ._expression.csv │ ├── ._expression_sparse.csv │ ├── ._genotypes.csv │ ├── ._groundtruth_sparse.csv │ ├── ._prior_sparse.csv │ ├── ._simulate_expression.py │ ├── covs.csv │ ├── expression.csv │ ├── expression_sparse.csv │ ├── groundtruth_sparse.csv │ ├── prior_sparse.csv │ └── simulate_expression.py ├── helpers.R ├── paper_plots.R ├── plot.R ├── python_demo.py ├── r_demo.R └── standalone_demo.sh ├── include ├── array_helper.h ├── bayesnet.h ├── main_testing.h ├── ossolog.h ├── peerutil.h ├── sim.h ├── sparsefa.h ├── sparsefa.i └── vbfa.h ├── peer.1 ├── peer.xcodeproj ├── lp2.mode1v3 ├── lp2.pbxuser ├── mz2.mode1v3 ├── mz2.pbxuser └── project.pbxproj ├── peertesting-Info.plist ├── python ├── CMakeLists.txt ├── Makefile ├── get_numpy_include.py ├── lib ├── peer.i ├── setup.py └── swig_typemaps.i └── src ├── CMakeLists.txt ├── array_helper.cpp ├── bayesnet.cpp ├── main_testing.cpp ├── peerutil.cpp ├── peerutil_main.cpp ├── sim.cpp ├── sparsefa.cpp ├── tests.cpp └── vbfa.cpp /.gitignore: -------------------------------------------------------------------------------- 1 | build/* 2 | CMakeFiles/* 3 | cran/peer/DESCRIPTION 4 | cran/peer/NAMESPACE 5 | cran/peer/R 6 | cran/peer/man 7 | cran/peer/src/*.cpp 8 | cran/peer/src/*.so 9 | cran/peer/src/*.h 10 | cran/peer_source.tgz 11 | cran/peer/src/alglib 12 | -------------------------------------------------------------------------------- /External/Eigen: -------------------------------------------------------------------------------- 1 | ./Eigen-3.1.0-alpha2/Eigen -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/.hg_archival.txt: -------------------------------------------------------------------------------- 1 | repo: 8a21fd850624c931e448cbcfb38168cb2717c790 2 | node: 304c88ca3affc16dd0b008b1104873986edd77af 3 | branch: default 4 | tag: 3.1.0-alpha2 5 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/.hgeol: -------------------------------------------------------------------------------- 1 | [patterns] 2 | scripts/*.in = LF 3 | debug/msvc/*.dat = CRLF 4 | unsupported/test/mpreal/*.* = CRLF 5 | ** = native 6 | 7 | [repository] 8 | native = LF 9 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/.hgignore: -------------------------------------------------------------------------------- 1 | syntax: glob 2 | qrc_*cxx 3 | *.orig 4 | *.pyc 5 | *.diff 6 | diff 7 | *.save 8 | save 9 | *.old 10 | *.gmo 11 | *.qm 12 | core 13 | core.* 14 | *.bak 15 | *~ 16 | build* 17 | *.moc.* 18 | *.moc 19 | ui_* 20 | CMakeCache.txt 21 | tags 22 | .*.swp 23 | activity.png 24 | *.out 25 | *.php* 26 | *.log 27 | *.orig 28 | *.rej 29 | log 30 | patch 31 | a 32 | a.* 33 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/.krazy: -------------------------------------------------------------------------------- 1 | SKIP /disabled/ 2 | SKIP /bench/ 3 | SKIP /build/ 4 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/CTestCustom.cmake.in: -------------------------------------------------------------------------------- 1 | 2 | ## A tribute to Dynamic! 3 | set(CTEST_CUSTOM_MAXIMUM_NUMBER_OF_WARNINGS "33331") 4 | set(CTEST_CUSTOM_MAXIMUM_NUMBER_OF_ERRORS "33331") 5 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/Eigen/Array: -------------------------------------------------------------------------------- 1 | #ifndef EIGEN_ARRAY_MODULE_H 2 | #define EIGEN_ARRAY_MODULE_H 3 | 4 | // include Core first to handle Eigen2 support macros 5 | #include "Core" 6 | 7 | #ifndef EIGEN2_SUPPORT 8 | #error The Eigen/Array header does no longer exist in Eigen3. All that functionality has moved to Eigen/Core. 9 | #endif 10 | 11 | #endif // EIGEN_ARRAY_MODULE_H 12 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/Eigen/Dense: -------------------------------------------------------------------------------- 1 | #include "Core" 2 | #include "LU" 3 | #include "Cholesky" 4 | #include "QR" 5 | #include "SVD" 6 | #include "Geometry" 7 | #include "Eigenvalues" 8 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/Eigen/Eigen: -------------------------------------------------------------------------------- 1 | #include "Dense" 2 | //#include "Sparse" 3 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/Eigen/src/CMakeLists.txt: -------------------------------------------------------------------------------- 1 | file(GLOB Eigen_src_subdirectories "*") 2 | escape_string_as_regex(ESCAPED_CMAKE_CURRENT_SOURCE_DIR "${CMAKE_CURRENT_SOURCE_DIR}") 3 | foreach(f ${Eigen_src_subdirectories}) 4 | if(NOT f MATCHES "\\.txt" AND NOT f MATCHES "${ESCAPED_CMAKE_CURRENT_SOURCE_DIR}/[.].+" ) 5 | add_subdirectory(${f}) 6 | endif() 7 | endforeach() 8 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/Eigen/src/Cholesky/CMakeLists.txt: -------------------------------------------------------------------------------- 1 | FILE(GLOB Eigen_Cholesky_SRCS "*.h") 2 | 3 | INSTALL(FILES 4 | ${Eigen_Cholesky_SRCS} 5 | DESTINATION ${INCLUDE_INSTALL_DIR}/Eigen/src/Cholesky COMPONENT Devel 6 | ) 7 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/Eigen/src/CholmodSupport/CMakeLists.txt: -------------------------------------------------------------------------------- 1 | FILE(GLOB Eigen_CholmodSupport_SRCS "*.h") 2 | 3 | INSTALL(FILES 4 | ${Eigen_CholmodSupport_SRCS} 5 | DESTINATION ${INCLUDE_INSTALL_DIR}/Eigen/src/CholmodSupport COMPONENT Devel 6 | ) 7 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/Eigen/src/Core/CMakeLists.txt: -------------------------------------------------------------------------------- 1 | FILE(GLOB Eigen_Core_SRCS "*.h") 2 | 3 | INSTALL(FILES 4 | ${Eigen_Core_SRCS} 5 | DESTINATION ${INCLUDE_INSTALL_DIR}/Eigen/src/Core COMPONENT Devel 6 | ) 7 | 8 | ADD_SUBDIRECTORY(products) 9 | ADD_SUBDIRECTORY(util) 10 | ADD_SUBDIRECTORY(arch) 11 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/Eigen/src/Core/arch/AltiVec/CMakeLists.txt: -------------------------------------------------------------------------------- 1 | FILE(GLOB Eigen_Core_arch_AltiVec_SRCS "*.h") 2 | 3 | INSTALL(FILES 4 | ${Eigen_Core_arch_AltiVec_SRCS} 5 | DESTINATION ${INCLUDE_INSTALL_DIR}/Eigen/src/Core/arch/AltiVec COMPONENT Devel 6 | ) 7 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/Eigen/src/Core/arch/CMakeLists.txt: -------------------------------------------------------------------------------- 1 | ADD_SUBDIRECTORY(SSE) 2 | ADD_SUBDIRECTORY(AltiVec) 3 | ADD_SUBDIRECTORY(NEON) 4 | ADD_SUBDIRECTORY(Default) 5 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/Eigen/src/Core/arch/Default/CMakeLists.txt: -------------------------------------------------------------------------------- 1 | FILE(GLOB Eigen_Core_arch_Default_SRCS "*.h") 2 | 3 | INSTALL(FILES 4 | ${Eigen_Core_arch_Default_SRCS} 5 | DESTINATION ${INCLUDE_INSTALL_DIR}/Eigen/src/Core/arch/Default COMPONENT Devel 6 | ) 7 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/Eigen/src/Core/arch/NEON/CMakeLists.txt: -------------------------------------------------------------------------------- 1 | FILE(GLOB Eigen_Core_arch_NEON_SRCS "*.h") 2 | 3 | INSTALL(FILES 4 | ${Eigen_Core_arch_NEON_SRCS} 5 | DESTINATION ${INCLUDE_INSTALL_DIR}/Eigen/src/Core/arch/NEON COMPONENT Devel 6 | ) 7 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/Eigen/src/Core/arch/SSE/CMakeLists.txt: -------------------------------------------------------------------------------- 1 | FILE(GLOB Eigen_Core_arch_SSE_SRCS "*.h") 2 | 3 | INSTALL(FILES 4 | ${Eigen_Core_arch_SSE_SRCS} 5 | DESTINATION ${INCLUDE_INSTALL_DIR}/Eigen/src/Core/arch/SSE COMPONENT Devel 6 | ) 7 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/Eigen/src/Core/products/CMakeLists.txt: -------------------------------------------------------------------------------- 1 | FILE(GLOB Eigen_Core_Product_SRCS "*.h") 2 | 3 | INSTALL(FILES 4 | ${Eigen_Core_Product_SRCS} 5 | DESTINATION ${INCLUDE_INSTALL_DIR}/Eigen/src/Core/products COMPONENT Devel 6 | ) 7 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/Eigen/src/Core/util/CMakeLists.txt: -------------------------------------------------------------------------------- 1 | FILE(GLOB Eigen_Core_util_SRCS "*.h") 2 | 3 | INSTALL(FILES 4 | ${Eigen_Core_util_SRCS} 5 | DESTINATION ${INCLUDE_INSTALL_DIR}/Eigen/src/Core/util COMPONENT Devel 6 | ) 7 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/Eigen/src/Core/util/ReenableStupidWarnings.h: -------------------------------------------------------------------------------- 1 | #ifdef EIGEN_WARNINGS_DISABLED 2 | #undef EIGEN_WARNINGS_DISABLED 3 | 4 | #ifndef EIGEN_PERMANENTLY_DISABLE_STUPID_WARNINGS 5 | #ifdef _MSC_VER 6 | #pragma warning( pop ) 7 | #elif defined __INTEL_COMPILER 8 | #pragma warning pop 9 | #elif defined __clang__ 10 | #pragma clang diagnostic pop 11 | #endif 12 | #endif 13 | 14 | #endif // EIGEN_WARNINGS_DISABLED 15 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/Eigen/src/Eigen2Support/CMakeLists.txt: -------------------------------------------------------------------------------- 1 | FILE(GLOB Eigen_Eigen2Support_SRCS "*.h") 2 | 3 | INSTALL(FILES 4 | ${Eigen_Eigen2Support_SRCS} 5 | DESTINATION ${INCLUDE_INSTALL_DIR}/Eigen/src/Eigen2Support COMPONENT Devel 6 | ) 7 | 8 | ADD_SUBDIRECTORY(Geometry) -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/Eigen/src/Eigen2Support/Geometry/CMakeLists.txt: -------------------------------------------------------------------------------- 1 | FILE(GLOB Eigen_Eigen2Support_Geometry_SRCS "*.h") 2 | 3 | INSTALL(FILES 4 | ${Eigen_Eigen2Support_Geometry_SRCS} 5 | DESTINATION ${INCLUDE_INSTALL_DIR}/Eigen/src/Eigen2Support/Geometry 6 | ) 7 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/Eigen/src/Eigenvalues/CMakeLists.txt: -------------------------------------------------------------------------------- 1 | FILE(GLOB Eigen_EIGENVALUES_SRCS "*.h") 2 | 3 | INSTALL(FILES 4 | ${Eigen_EIGENVALUES_SRCS} 5 | DESTINATION ${INCLUDE_INSTALL_DIR}/Eigen/src/Eigenvalues COMPONENT Devel 6 | ) 7 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/Eigen/src/Geometry/CMakeLists.txt: -------------------------------------------------------------------------------- 1 | FILE(GLOB Eigen_Geometry_SRCS "*.h") 2 | 3 | INSTALL(FILES 4 | ${Eigen_Geometry_SRCS} 5 | DESTINATION ${INCLUDE_INSTALL_DIR}/Eigen/src/Geometry COMPONENT Devel 6 | ) 7 | 8 | ADD_SUBDIRECTORY(arch) 9 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/Eigen/src/Geometry/arch/CMakeLists.txt: -------------------------------------------------------------------------------- 1 | FILE(GLOB Eigen_Geometry_arch_SRCS "*.h") 2 | 3 | INSTALL(FILES 4 | ${Eigen_Geometry_arch_SRCS} 5 | DESTINATION ${INCLUDE_INSTALL_DIR}/Eigen/src/Geometry/arch COMPONENT Devel 6 | ) 7 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/Eigen/src/Householder/CMakeLists.txt: -------------------------------------------------------------------------------- 1 | FILE(GLOB Eigen_Householder_SRCS "*.h") 2 | 3 | INSTALL(FILES 4 | ${Eigen_Householder_SRCS} 5 | DESTINATION ${INCLUDE_INSTALL_DIR}/Eigen/src/Householder COMPONENT Devel 6 | ) 7 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/Eigen/src/IterativeLinearSolvers/CMakeLists.txt: -------------------------------------------------------------------------------- 1 | FILE(GLOB Eigen_IterativeLinearSolvers_SRCS "*.h") 2 | 3 | INSTALL(FILES 4 | ${Eigen_IterativeLinearSolvers_SRCS} 5 | DESTINATION ${INCLUDE_INSTALL_DIR}/Eigen/src/IterativeLinearSolvers COMPONENT Devel 6 | ) 7 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/Eigen/src/Jacobi/CMakeLists.txt: -------------------------------------------------------------------------------- 1 | FILE(GLOB Eigen_Jacobi_SRCS "*.h") 2 | 3 | INSTALL(FILES 4 | ${Eigen_Jacobi_SRCS} 5 | DESTINATION ${INCLUDE_INSTALL_DIR}/Eigen/src/Jacobi COMPONENT Devel 6 | ) 7 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/Eigen/src/LU/CMakeLists.txt: -------------------------------------------------------------------------------- 1 | FILE(GLOB Eigen_LU_SRCS "*.h") 2 | 3 | INSTALL(FILES 4 | ${Eigen_LU_SRCS} 5 | DESTINATION ${INCLUDE_INSTALL_DIR}/Eigen/src/LU COMPONENT Devel 6 | ) 7 | 8 | ADD_SUBDIRECTORY(arch) 9 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/Eigen/src/LU/arch/CMakeLists.txt: -------------------------------------------------------------------------------- 1 | FILE(GLOB Eigen_LU_arch_SRCS "*.h") 2 | 3 | INSTALL(FILES 4 | ${Eigen_LU_arch_SRCS} 5 | DESTINATION ${INCLUDE_INSTALL_DIR}/Eigen/src/LU/arch COMPONENT Devel 6 | ) 7 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/Eigen/src/OrderingMethods/CMakeLists.txt: -------------------------------------------------------------------------------- 1 | FILE(GLOB Eigen_OrderingMethods_SRCS "*.h") 2 | 3 | INSTALL(FILES 4 | ${Eigen_OrderingMethods_SRCS} 5 | DESTINATION ${INCLUDE_INSTALL_DIR}/Eigen/src/OrderingMethods COMPONENT Devel 6 | ) 7 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/Eigen/src/PARDISOSupport/CMakeLists.txt: -------------------------------------------------------------------------------- 1 | FILE(GLOB Eigen_PardisoSupport_SRCS "*.h") 2 | 3 | INSTALL(FILES 4 | ${Eigen_PardisoSupport_SRCS} 5 | DESTINATION ${INCLUDE_INSTALL_DIR}/Eigen/src/PardisoSupport COMPONENT Devel 6 | ) 7 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/Eigen/src/QR/CMakeLists.txt: -------------------------------------------------------------------------------- 1 | FILE(GLOB Eigen_QR_SRCS "*.h") 2 | 3 | INSTALL(FILES 4 | ${Eigen_QR_SRCS} 5 | DESTINATION ${INCLUDE_INSTALL_DIR}/Eigen/src/QR COMPONENT Devel 6 | ) 7 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/Eigen/src/SVD/CMakeLists.txt: -------------------------------------------------------------------------------- 1 | FILE(GLOB Eigen_SVD_SRCS "*.h") 2 | 3 | INSTALL(FILES 4 | ${Eigen_SVD_SRCS} 5 | DESTINATION ${INCLUDE_INSTALL_DIR}/Eigen/src/SVD COMPONENT Devel 6 | ) 7 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/Eigen/src/SparseCholesky/CMakeLists.txt: -------------------------------------------------------------------------------- 1 | FILE(GLOB Eigen_SparseCholesky_SRCS "*.h") 2 | 3 | INSTALL(FILES 4 | ${Eigen_SparseCholesky_SRCS} 5 | DESTINATION ${INCLUDE_INSTALL_DIR}/Eigen/src/SparseCholesky COMPONENT Devel 6 | ) 7 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/Eigen/src/SparseCore/CMakeLists.txt: -------------------------------------------------------------------------------- 1 | FILE(GLOB Eigen_SparseCore_SRCS "*.h") 2 | 3 | INSTALL(FILES 4 | ${Eigen_SparseCore_SRCS} 5 | DESTINATION ${INCLUDE_INSTALL_DIR}/Eigen/src/SparseCore COMPONENT Devel 6 | ) 7 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/Eigen/src/SparseCore/SparseAssign.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PMBio/peer/40bc4b2cd92459ce42f44dfe279717436395f3f6/External/Eigen-3.1.0-alpha2/Eigen/src/SparseCore/SparseAssign.h -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/Eigen/src/StlSupport/CMakeLists.txt: -------------------------------------------------------------------------------- 1 | FILE(GLOB Eigen_StlSupport_SRCS "*.h") 2 | 3 | INSTALL(FILES 4 | ${Eigen_StlSupport_SRCS} 5 | DESTINATION ${INCLUDE_INSTALL_DIR}/Eigen/src/StlSupport COMPONENT Devel 6 | ) 7 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/Eigen/src/SuperLUSupport/CMakeLists.txt: -------------------------------------------------------------------------------- 1 | FILE(GLOB Eigen_SuperLUSupport_SRCS "*.h") 2 | 3 | INSTALL(FILES 4 | ${Eigen_SuperLUSupport_SRCS} 5 | DESTINATION ${INCLUDE_INSTALL_DIR}/Eigen/src/SuperLUSupport COMPONENT Devel 6 | ) 7 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/Eigen/src/UmfPackSupport/CMakeLists.txt: -------------------------------------------------------------------------------- 1 | FILE(GLOB Eigen_UmfPackSupport_SRCS "*.h") 2 | 3 | INSTALL(FILES 4 | ${Eigen_UmfPackSupport_SRCS} 5 | DESTINATION ${INCLUDE_INSTALL_DIR}/Eigen/src/UmfPackSupport COMPONENT Devel 6 | ) 7 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/Eigen/src/misc/CMakeLists.txt: -------------------------------------------------------------------------------- 1 | FILE(GLOB Eigen_misc_SRCS "*.h") 2 | 3 | INSTALL(FILES 4 | ${Eigen_misc_SRCS} 5 | DESTINATION ${INCLUDE_INSTALL_DIR}/Eigen/src/misc COMPONENT Devel 6 | ) 7 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/Eigen/src/plugins/CMakeLists.txt: -------------------------------------------------------------------------------- 1 | FILE(GLOB Eigen_plugins_SRCS "*.h") 2 | 3 | INSTALL(FILES 4 | ${Eigen_plugins_SRCS} 5 | DESTINATION ${INCLUDE_INSTALL_DIR}/Eigen/src/plugins COMPONENT Devel 6 | ) 7 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/bench/bench_sum.cpp: -------------------------------------------------------------------------------- 1 | #include 2 | #include 3 | using namespace Eigen; 4 | using namespace std; 5 | 6 | int main() 7 | { 8 | typedef Matrix Vec; 9 | Vec v(SIZE); 10 | v.setZero(); 11 | v[0] = 1; 12 | v[1] = 2; 13 | for(int i = 0; i < 1000000; i++) 14 | { 15 | v.coeffRef(0) += v.sum() * SCALAR(1e-20); 16 | } 17 | cout << v.sum() << endl; 18 | } 19 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/bench/btl/generic_bench/static/intel_bench_fixed_size.hh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PMBio/peer/40bc4b2cd92459ce42f44dfe279717436395f3f6/External/Eigen-3.1.0-alpha2/bench/btl/generic_bench/static/intel_bench_fixed_size.hh -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/bench/btl/generic_bench/static/static_size_generator.hh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PMBio/peer/40bc4b2cd92459ce42f44dfe279717436395f3f6/External/Eigen-3.1.0-alpha2/bench/btl/generic_bench/static/static_size_generator.hh -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/bench/btl/generic_bench/timers/STL_perf_analyzer.hh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PMBio/peer/40bc4b2cd92459ce42f44dfe279717436395f3f6/External/Eigen-3.1.0-alpha2/bench/btl/generic_bench/timers/STL_perf_analyzer.hh -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/bench/btl/generic_bench/timers/STL_timer.hh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PMBio/peer/40bc4b2cd92459ce42f44dfe279717436395f3f6/External/Eigen-3.1.0-alpha2/bench/btl/generic_bench/timers/STL_timer.hh -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/bench/btl/generic_bench/timers/mixed_perf_analyzer.hh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PMBio/peer/40bc4b2cd92459ce42f44dfe279717436395f3f6/External/Eigen-3.1.0-alpha2/bench/btl/generic_bench/timers/mixed_perf_analyzer.hh -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/bench/btl/generic_bench/utils/size_lin_log.hh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PMBio/peer/40bc4b2cd92459ce42f44dfe279717436395f3f6/External/Eigen-3.1.0-alpha2/bench/btl/generic_bench/utils/size_lin_log.hh -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/bench/btl/libs/STL/CMakeLists.txt: -------------------------------------------------------------------------------- 1 | 2 | btl_add_bench(btl_STL main.cpp OFF) 3 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/bench/btl/libs/gmm/CMakeLists.txt: -------------------------------------------------------------------------------- 1 | 2 | find_package(GMM) 3 | if (GMM_FOUND) 4 | include_directories(${GMM_INCLUDES}) 5 | btl_add_bench(btl_gmm main.cpp) 6 | endif (GMM_FOUND) 7 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/bench/btl/libs/mtl4/.kdbgrc.main: -------------------------------------------------------------------------------- 1 | [General] 2 | DebuggerCmdStr= 3 | DriverName=GDB 4 | FileVersion=1 5 | OptionsSelected= 6 | ProgramArgs= 7 | TTYLevel=7 8 | WorkingDirectory= 9 | 10 | [Memory] 11 | ColumnWidths=80,0 12 | NumExprs=0 13 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/bench/btl/libs/mtl4/CMakeLists.txt: -------------------------------------------------------------------------------- 1 | 2 | find_package(MTL4) 3 | if (MTL4_FOUND) 4 | include_directories(${MTL4_INCLUDE_DIR}) 5 | btl_add_bench(btl_mtl4 main.cpp) 6 | endif (MTL4_FOUND) 7 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/bench/btl/libs/tvmet/CMakeLists.txt: -------------------------------------------------------------------------------- 1 | 2 | find_package(Tvmet) 3 | if (TVMET_FOUND) 4 | include_directories(${TVMET_INCLUDE_DIR}) 5 | btl_add_bench(btl_tvmet main.cpp OFF) 6 | endif (TVMET_FOUND) 7 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/bench/btl/libs/ublas/CMakeLists.txt: -------------------------------------------------------------------------------- 1 | 2 | find_package(Boost) 3 | if (Boost_FOUND) 4 | include_directories(${Boost_INCLUDE_DIRS}) 5 | include_directories(${Boost_INCLUDES}) 6 | btl_add_bench(btl_ublas main.cpp) 7 | endif (Boost_FOUND) 8 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/blas/README.txt: -------------------------------------------------------------------------------- 1 | 2 | This directory contains a BLAS library built on top of Eigen. 3 | 4 | This is currently a work in progress which is far to be ready for use, 5 | but feel free to contribute to it if you wish. 6 | 7 | This module is not built by default. In order to compile it, you need to 8 | type 'make blas' from within your build dir. 9 | 10 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/debug/gdb/__init__.py: -------------------------------------------------------------------------------- 1 | # Intentionally empty 2 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/demos/CMakeLists.txt: -------------------------------------------------------------------------------- 1 | project(EigenDemos) 2 | 3 | add_custom_target(demos) 4 | 5 | if(NOT EIGEN_TEST_NOQT) 6 | find_package(Qt4) 7 | if(QT4_FOUND) 8 | add_subdirectory(mandelbrot) 9 | add_subdirectory(opengl) 10 | else(QT4_FOUND) 11 | message(STATUS "Qt4 not found, so disabling the mandelbrot and opengl demos") 12 | endif(QT4_FOUND) 13 | endif() 14 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/demos/mandelbrot/README: -------------------------------------------------------------------------------- 1 | *** Mandelbrot demo *** 2 | 3 | Controls: 4 | * Left mouse button to center view at a point. 5 | * Drag vertically with left mouse button to zoom in and out. 6 | 7 | Be sure to enable SSE2 or AltiVec to improve performance. 8 | 9 | The number of iterations, and the choice between single and double precision, are 10 | determined at runtime depending on the zoom level. 11 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/demos/mix_eigen_and_c/README: -------------------------------------------------------------------------------- 1 | This is an example of how one can wrap some of Eigen into a C library. 2 | 3 | To try this with GCC, do: 4 | 5 | g++ -c binary_library.cpp -O2 -msse2 -I ../.. 6 | gcc example.c binary_library.o -o example -lstdc++ 7 | ./example 8 | 9 | TODO: add CMakeLists, add more explanations here -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/Eigen_Silly_Professor_64x64.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PMBio/peer/40bc4b2cd92459ce42f44dfe279717436395f3f6/External/Eigen-3.1.0-alpha2/doc/Eigen_Silly_Professor_64x64.png -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/I06_TopicEigenExpressionTemplates.dox: -------------------------------------------------------------------------------- 1 | namespace Eigen { 2 | 3 | /** \page TopicEigenExpressionTemplates Expression templates in Eigen 4 | 5 | 6 | TODO: write this dox page! 7 | 8 | Is linked from the tutorial on arithmetic ops. 9 | 10 | */ 11 | 12 | } 13 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/I07_TopicScalarTypes.dox: -------------------------------------------------------------------------------- 1 | namespace Eigen { 2 | 3 | /** \page TopicScalarTypes Scalar types 4 | 5 | 6 | TODO: write this dox page! 7 | 8 | Is linked from the tutorial on the Matrix class. 9 | 10 | */ 11 | 12 | } 13 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/I08_Resizing.dox: -------------------------------------------------------------------------------- 1 | namespace Eigen { 2 | 3 | /** \page TopicResizing Resizing 4 | 5 | 6 | TODO: write this dox page! 7 | 8 | Is linked from the tutorial on the Matrix class. 9 | 10 | */ 11 | } 12 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/I09_Vectorization.dox: -------------------------------------------------------------------------------- 1 | namespace Eigen { 2 | 3 | /** \page TopicVectorization Vectorizaion 4 | 5 | 6 | TODO: write this dox page! 7 | 8 | */ 9 | } 10 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/I10_Assertions.dox: -------------------------------------------------------------------------------- 1 | namespace Eigen { 2 | 3 | /** \page TopicAssertions Assertions 4 | 5 | 6 | TODO: write this dox page! 7 | 8 | Is linked from the tutorial on matrix arithmetic. 9 | 10 | \sa Section \ref TopicPreprocessorDirectivesAssertions on page \ref TopicPreprocessorDirectives. 11 | 12 | */ 13 | } 14 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/eigendoxy_footer.html.in: -------------------------------------------------------------------------------- 1 | 2 |
3 | doxygen
4 | 5 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/examples/.krazy: -------------------------------------------------------------------------------- 1 | EXCLUDE copyright 2 | EXCLUDE license 3 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/examples/DenseBase_middleCols_int.cpp: -------------------------------------------------------------------------------- 1 | #include 2 | #include 3 | 4 | using namespace Eigen; 5 | using namespace std; 6 | 7 | int main(void) 8 | { 9 | int const N = 5; 10 | MatrixXi A(N,N); 11 | A.setRandom(); 12 | cout << "A =\n" << A << '\n' << endl; 13 | cout << "A(1..3,:) =\n" << A.middleCols(1,3) << endl; 14 | return 0; 15 | } 16 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/examples/DenseBase_middleRows_int.cpp: -------------------------------------------------------------------------------- 1 | #include 2 | #include 3 | 4 | using namespace Eigen; 5 | using namespace std; 6 | 7 | int main(void) 8 | { 9 | int const N = 5; 10 | MatrixXi A(N,N); 11 | A.setRandom(); 12 | cout << "A =\n" << A << '\n' << endl; 13 | cout << "A(2..3,:) =\n" << A.middleRows(2,2) << endl; 14 | return 0; 15 | } 16 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/examples/DenseBase_template_int_middleCols.cpp: -------------------------------------------------------------------------------- 1 | #include 2 | #include 3 | 4 | using namespace Eigen; 5 | using namespace std; 6 | 7 | int main(void) 8 | { 9 | int const N = 5; 10 | MatrixXi A(N,N); 11 | A.setRandom(); 12 | cout << "A =\n" << A << '\n' << endl; 13 | cout << "A(:,1..3) =\n" << A.middleCols<3>(1) << endl; 14 | return 0; 15 | } 16 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/examples/DenseBase_template_int_middleRows.cpp: -------------------------------------------------------------------------------- 1 | #include 2 | #include 3 | 4 | using namespace Eigen; 5 | using namespace std; 6 | 7 | int main(void) 8 | { 9 | int const N = 5; 10 | MatrixXi A(N,N); 11 | A.setRandom(); 12 | cout << "A =\n" << A << '\n' << endl; 13 | cout << "A(1..3,:) =\n" << A.middleRows<3>(1) << endl; 14 | return 0; 15 | } 16 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/examples/QuickStart_example.cpp: -------------------------------------------------------------------------------- 1 | #include 2 | #include 3 | 4 | using Eigen::MatrixXd; 5 | 6 | int main() 7 | { 8 | MatrixXd m(2,2); 9 | m(0,0) = 3; 10 | m(1,0) = 2.5; 11 | m(0,1) = -1; 12 | m(1,1) = m(1,0) + m(0,1); 13 | std::cout << m << std::endl; 14 | } 15 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/examples/QuickStart_example2_dynamic.cpp: -------------------------------------------------------------------------------- 1 | #include 2 | #include 3 | 4 | using namespace Eigen; 5 | using namespace std; 6 | 7 | int main() 8 | { 9 | MatrixXf m = MatrixXf::Random(3,3); 10 | m = (m + MatrixXf::Constant(3,3,1.2)) * 50; 11 | cout << "m =" << endl << m << endl; 12 | VectorXf v(3); 13 | v << 1, 2, 3; 14 | cout << "m * v =" << endl << m * v << endl; 15 | } 16 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/examples/QuickStart_example2_fixed.cpp: -------------------------------------------------------------------------------- 1 | #include 2 | #include 3 | 4 | using namespace Eigen; 5 | using namespace std; 6 | 7 | int main() 8 | { 9 | Matrix3f m = Matrix3f::Random(); 10 | m = (m + Matrix3f::Constant(1.2)) * 50; 11 | cout << "m =" << endl << m << endl; 12 | Vector3f v(1,2,3); 13 | 14 | cout << "m * v =" << endl << m * v << endl; 15 | } 16 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/examples/TutorialLinAlgExSolveLDLT.cpp: -------------------------------------------------------------------------------- 1 | #include 2 | #include 3 | 4 | using namespace std; 5 | using namespace Eigen; 6 | 7 | int main() 8 | { 9 | Matrix2f A, b; 10 | A << 2, -1, -1, 3; 11 | b << 1, 2, 3, 1; 12 | cout << "Here is the matrix A:\n" << A << endl; 13 | cout << "Here is the right hand side b:\n" << b << endl; 14 | Matrix2f x = A.ldlt().solve(b); 15 | cout << "The solution is:\n" << x << endl; 16 | } 17 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/examples/TutorialLinAlgInverseDeterminant.cpp: -------------------------------------------------------------------------------- 1 | #include 2 | #include 3 | 4 | using namespace std; 5 | using namespace Eigen; 6 | 7 | int main() 8 | { 9 | Matrix3f A; 10 | A << 1, 2, 1, 11 | 2, 1, 0, 12 | -1, 1, 2; 13 | cout << "Here is the matrix A:\n" << A << endl; 14 | cout << "The determinant of A is " << A.determinant() << endl; 15 | cout << "The inverse of A is:\n" << A.inverse() << endl; 16 | } -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/examples/Tutorial_ArrayClass_mult.cpp: -------------------------------------------------------------------------------- 1 | #include 2 | #include 3 | 4 | using namespace Eigen; 5 | using namespace std; 6 | 7 | int main() 8 | { 9 | ArrayXXf a(2,2); 10 | ArrayXXf b(2,2); 11 | a << 1,2, 12 | 3,4; 13 | b << 5,6, 14 | 7,8; 15 | cout << "a * b = " << endl << a * b << endl; 16 | } 17 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/examples/Tutorial_BlockOperations_vector.cpp: -------------------------------------------------------------------------------- 1 | #include 2 | #include 3 | 4 | using namespace std; 5 | 6 | int main() 7 | { 8 | Eigen::ArrayXf v(6); 9 | v << 1, 2, 3, 4, 5, 6; 10 | cout << "v.head(3) =" << endl << v.head(3) << endl << endl; 11 | cout << "v.tail<3>() = " << endl << v.tail<3>() << endl << endl; 12 | v.segment(1,4) *= 2; 13 | cout << "after 'v.segment(1,4) *= 2', v =" << endl << v << endl; 14 | } 15 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/examples/Tutorial_ReductionsVisitorsBroadcasting_colwise.cpp: -------------------------------------------------------------------------------- 1 | #include 2 | #include 3 | 4 | using namespace std; 5 | int main() 6 | { 7 | Eigen::MatrixXf mat(2,4); 8 | mat << 1, 2, 6, 9, 9 | 3, 1, 7, 2; 10 | 11 | std::cout << "Column's maximum: " << std::endl 12 | << mat.colwise().maxCoeff() << std::endl; 13 | } 14 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/examples/Tutorial_ReductionsVisitorsBroadcasting_rowwise.cpp: -------------------------------------------------------------------------------- 1 | #include 2 | #include 3 | 4 | using namespace std; 5 | int main() 6 | { 7 | Eigen::MatrixXf mat(2,4); 8 | mat << 1, 2, 6, 9, 9 | 3, 1, 7, 2; 10 | 11 | std::cout << "Row's maximum: " << std::endl 12 | << mat.rowwise().maxCoeff() << std::endl; 13 | } 14 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/examples/Tutorial_simple_example_fixed_size.cpp: -------------------------------------------------------------------------------- 1 | #include 2 | #include 3 | 4 | using namespace Eigen; 5 | 6 | int main() 7 | { 8 | Matrix3f m3; 9 | m3 << 1, 2, 3, 4, 5, 6, 7, 8, 9; 10 | Matrix4f m4 = Matrix4f::Identity(); 11 | Vector4i v4(1, 2, 3, 4); 12 | 13 | std::cout << "m3\n" << m3 << "\nm4:\n" 14 | << m4 << "\nv4:\n" << v4 << std::endl; 15 | } 16 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/examples/tut_matrix_resize_fixed_size.cpp: -------------------------------------------------------------------------------- 1 | #include 2 | #include 3 | 4 | using namespace Eigen; 5 | 6 | int main() 7 | { 8 | Matrix4d m; 9 | m.resize(4,4); // no operation 10 | std::cout << "The matrix m is of size " 11 | << m.rows() << "x" << m.cols() << std::endl; 12 | } 13 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/.krazy: -------------------------------------------------------------------------------- 1 | EXCLUDE copyright 2 | EXCLUDE license 3 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/AngleAxis_mimic_euler.cpp: -------------------------------------------------------------------------------- 1 | Matrix3f m; 2 | m = AngleAxisf(0.25*M_PI, Vector3f::UnitX()) 3 | * AngleAxisf(0.5*M_PI, Vector3f::UnitY()) 4 | * AngleAxisf(0.33*M_PI, Vector3f::UnitZ()); 5 | cout << m << endl << "is unitary: " << m.isUnitary() << endl; 6 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/ColPivHouseholderQR_solve.cpp: -------------------------------------------------------------------------------- 1 | Matrix3f m = Matrix3f::Random(); 2 | Matrix3f y = Matrix3f::Random(); 3 | cout << "Here is the matrix m:" << endl << m << endl; 4 | cout << "Here is the matrix y:" << endl << y << endl; 5 | Matrix3f x; 6 | x = m.colPivHouseholderQr().solve(y); 7 | assert(y.isApprox(m*x)); 8 | cout << "Here is a solution x to the equation mx=y:" << endl << x << endl; 9 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/ComplexEigenSolver_eigenvalues.cpp: -------------------------------------------------------------------------------- 1 | MatrixXcf ones = MatrixXcf::Ones(3,3); 2 | ComplexEigenSolver ces(ones, /* computeEigenvectors = */ false); 3 | cout << "The eigenvalues of the 3x3 matrix of ones are:" 4 | << endl << ces.eigenvalues() << endl; 5 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/ComplexEigenSolver_eigenvectors.cpp: -------------------------------------------------------------------------------- 1 | MatrixXcf ones = MatrixXcf::Ones(3,3); 2 | ComplexEigenSolver ces(ones); 3 | cout << "The first eigenvector of the 3x3 matrix of ones is:" 4 | << endl << ces.eigenvectors().col(1) << endl; 5 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/ComplexSchur_compute.cpp: -------------------------------------------------------------------------------- 1 | MatrixXcf A = MatrixXcf::Random(4,4); 2 | ComplexSchur schur(4); 3 | schur.compute(A); 4 | cout << "The matrix T in the decomposition of A is:" << endl << schur.matrixT() << endl; 5 | schur.compute(A.inverse()); 6 | cout << "The matrix T in the decomposition of A^(-1) is:" << endl << schur.matrixT() << endl; 7 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/ComplexSchur_matrixT.cpp: -------------------------------------------------------------------------------- 1 | MatrixXcf A = MatrixXcf::Random(4,4); 2 | cout << "Here is a random 4x4 matrix, A:" << endl << A << endl << endl; 3 | ComplexSchur schurOfA(A, false); // false means do not compute U 4 | cout << "The triangular matrix T is:" << endl << schurOfA.matrixT() << endl; 5 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/ComplexSchur_matrixU.cpp: -------------------------------------------------------------------------------- 1 | MatrixXcf A = MatrixXcf::Random(4,4); 2 | cout << "Here is a random 4x4 matrix, A:" << endl << A << endl << endl; 3 | ComplexSchur schurOfA(A); 4 | cout << "The unitary matrix U is:" << endl << schurOfA.matrixU() << endl; 5 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/Cwise_abs.cpp: -------------------------------------------------------------------------------- 1 | Array3d v(1,-2,-3); 2 | cout << v.abs() << endl; 3 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/Cwise_abs2.cpp: -------------------------------------------------------------------------------- 1 | Array3d v(1,-2,-3); 2 | cout << v.abs2() << endl; 3 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/Cwise_acos.cpp: -------------------------------------------------------------------------------- 1 | Array3d v(0, sqrt(2.)/2, 1); 2 | cout << v.acos() << endl; 3 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/Cwise_boolean_and.cpp: -------------------------------------------------------------------------------- 1 | Array3d v(-1,2,1), w(-3,2,3); 2 | cout << ((vw) << endl; 3 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/Cwise_greater_equal.cpp: -------------------------------------------------------------------------------- 1 | Array3d v(1,2,3), w(3,2,1); 2 | cout << (v>=w) << endl; 3 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/Cwise_inverse.cpp: -------------------------------------------------------------------------------- 1 | Array3d v(2,3,4); 2 | cout << v.inverse() << endl; 3 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/Cwise_less.cpp: -------------------------------------------------------------------------------- 1 | Array3d v(1,2,3), w(3,2,1); 2 | cout << (v() = ..." << endl; 4 | cout << m.colwise().replicate<3>() << endl; 5 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/DirectionWise_replicate_int.cpp: -------------------------------------------------------------------------------- 1 | Vector3i v = Vector3i::Random(); 2 | cout << "Here is the vector v:" << endl << v << endl; 3 | cout << "v.rowwise().replicate(5) = ..." << endl; 4 | cout << v.rowwise().replicate(5) << endl; 5 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/EigenSolver_compute.cpp: -------------------------------------------------------------------------------- 1 | EigenSolver es; 2 | MatrixXf A = MatrixXf::Random(4,4); 3 | es.compute(A, /* computeEigenvectors = */ false); 4 | cout << "The eigenvalues of A are: " << es.eigenvalues().transpose() << endl; 5 | es.compute(A + MatrixXf::Identity(4,4), false); // re-use es to compute eigenvalues of A+I 6 | cout << "The eigenvalues of A+I are: " << es.eigenvalues().transpose() << endl; 7 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/EigenSolver_eigenvalues.cpp: -------------------------------------------------------------------------------- 1 | MatrixXd ones = MatrixXd::Ones(3,3); 2 | EigenSolver es(ones, false); 3 | cout << "The eigenvalues of the 3x3 matrix of ones are:" 4 | << endl << es.eigenvalues() << endl; 5 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/EigenSolver_eigenvectors.cpp: -------------------------------------------------------------------------------- 1 | MatrixXd ones = MatrixXd::Ones(3,3); 2 | EigenSolver es(ones); 3 | cout << "The first eigenvector of the 3x3 matrix of ones is:" 4 | << endl << es.eigenvectors().col(1) << endl; 5 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/FullPivHouseholderQR_solve.cpp: -------------------------------------------------------------------------------- 1 | Matrix3f m = Matrix3f::Random(); 2 | Matrix3f y = Matrix3f::Random(); 3 | cout << "Here is the matrix m:" << endl << m << endl; 4 | cout << "Here is the matrix y:" << endl << y << endl; 5 | Matrix3f x; 6 | x = m.fullPivHouseholderQr().solve(y); 7 | assert(y.isApprox(m*x)); 8 | cout << "Here is a solution x to the equation mx=y:" << endl << x << endl; 9 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/FullPivLU_image.cpp: -------------------------------------------------------------------------------- 1 | Matrix3d m; 2 | m << 1,1,0, 3 | 1,3,2, 4 | 0,1,1; 5 | cout << "Here is the matrix m:" << endl << m << endl; 6 | cout << "Notice that the middle column is the sum of the two others, so the " 7 | << "columns are linearly dependent." << endl; 8 | cout << "Here is a matrix whose columns have the same span but are linearly independent:" 9 | << endl << m.fullPivLu().image(m) << endl; 10 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/FullPivLU_kernel.cpp: -------------------------------------------------------------------------------- 1 | MatrixXf m = MatrixXf::Random(3,5); 2 | cout << "Here is the matrix m:" << endl << m << endl; 3 | MatrixXf ker = m.fullPivLu().kernel(); 4 | cout << "Here is a matrix whose columns form a basis of the kernel of m:" 5 | << endl << ker << endl; 6 | cout << "By definition of the kernel, m*ker is zero:" 7 | << endl << m*ker << endl; 8 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/HessenbergDecomposition_compute.cpp: -------------------------------------------------------------------------------- 1 | MatrixXcf A = MatrixXcf::Random(4,4); 2 | HessenbergDecomposition hd(4); 3 | hd.compute(A); 4 | cout << "The matrix H in the decomposition of A is:" << endl << hd.matrixH() << endl; 5 | hd.compute(2*A); // re-use hd to compute and store decomposition of 2A 6 | cout << "The matrix H in the decomposition of 2A is:" << endl << hd.matrixH() << endl; 7 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/HessenbergDecomposition_matrixH.cpp: -------------------------------------------------------------------------------- 1 | Matrix4f A = MatrixXf::Random(4,4); 2 | cout << "Here is a random 4x4 matrix:" << endl << A << endl; 3 | HessenbergDecomposition hessOfA(A); 4 | MatrixXf H = hessOfA.matrixH(); 5 | cout << "The Hessenberg matrix H is:" << endl << H << endl; 6 | MatrixXf Q = hessOfA.matrixQ(); 7 | cout << "The orthogonal matrix Q is:" << endl << Q << endl; 8 | cout << "Q H Q^T is:" << endl << Q * H * Q.transpose() << endl; 9 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/HouseholderQR_solve.cpp: -------------------------------------------------------------------------------- 1 | typedef Matrix Matrix3x3; 2 | Matrix3x3 m = Matrix3x3::Random(); 3 | Matrix3f y = Matrix3f::Random(); 4 | cout << "Here is the matrix m:" << endl << m << endl; 5 | cout << "Here is the matrix y:" << endl << y << endl; 6 | Matrix3f x; 7 | x = m.householderQr().solve(y); 8 | assert(y.isApprox(m*x)); 9 | cout << "Here is a solution x to the equation mx=y:" << endl << x << endl; 10 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/Jacobi_makeGivens.cpp: -------------------------------------------------------------------------------- 1 | Vector2f v = Vector2f::Random(); 2 | JacobiRotation G; 3 | G.makeGivens(v.x(), v.y()); 4 | cout << "Here is the vector v:" << endl << v << endl; 5 | v.applyOnTheLeft(0, 1, G.adjoint()); 6 | cout << "Here is the vector J' * v:" << endl << v << endl; -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/Jacobi_makeJacobi.cpp: -------------------------------------------------------------------------------- 1 | Matrix2f m = Matrix2f::Random(); 2 | m = (m + m.adjoint()).eval(); 3 | JacobiRotation J; 4 | J.makeJacobi(m, 0, 1); 5 | cout << "Here is the matrix m:" << endl << m << endl; 6 | m.applyOnTheLeft(0, 1, J.adjoint()); 7 | m.applyOnTheRight(0, 1, J); 8 | cout << "Here is the matrix J' * m * J:" << endl << m << endl; -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/Map_general_stride.cpp: -------------------------------------------------------------------------------- 1 | int array[24]; 2 | for(int i = 0; i < 24; ++i) array[i] = i; 3 | cout << Map > 4 | (array, 3, 3, Stride(8, 2)) 5 | << endl; 6 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/Map_inner_stride.cpp: -------------------------------------------------------------------------------- 1 | int array[12]; 2 | for(int i = 0; i < 12; ++i) array[i] = i; 3 | cout << Map > 4 | (array, 6) // the inner stride has already been passed as template parameter 5 | << endl; 6 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/Map_outer_stride.cpp: -------------------------------------------------------------------------------- 1 | int array[12]; 2 | for(int i = 0; i < 12; ++i) array[i] = i; 3 | cout << Map >(array, 3, 3, OuterStride<>(4)) << endl; 4 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/Map_placement_new.cpp: -------------------------------------------------------------------------------- 1 | int data[] = {1,2,3,4,5,6,7,8,9}; 2 | Map v(data,4); 3 | cout << "The mapped vector v is: " << v << "\n"; 4 | new (&v) Map(data+4,5); 5 | cout << "Now v is: " << v << "\n"; -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/Map_simple.cpp: -------------------------------------------------------------------------------- 1 | int array[9]; 2 | for(int i = 0; i < 9; ++i) array[i] = i; 3 | cout << Map(array) << endl; 4 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/MatrixBase_adjoint.cpp: -------------------------------------------------------------------------------- 1 | Matrix2cf m = Matrix2cf::Random(); 2 | cout << "Here is the 2x2 complex matrix m:" << endl << m << endl; 3 | cout << "Here is the adjoint of m:" << endl << m.adjoint() << endl; 4 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/MatrixBase_array.cpp: -------------------------------------------------------------------------------- 1 | Vector3d v(1,2,3); 2 | v.array() += 3; 3 | v.array() -= 2; 4 | cout << v << endl; 5 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/MatrixBase_array_const.cpp: -------------------------------------------------------------------------------- 1 | Vector3d v(-1,2,-3); 2 | cout << "the absolute values:" << endl << v.array().abs() << endl; 3 | cout << "the absolute values plus one:" << endl << v.array().abs()+1 << endl; 4 | cout << "sum of the squares: " << v.array().square().sum() << endl; 5 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/MatrixBase_asDiagonal.cpp: -------------------------------------------------------------------------------- 1 | cout << Matrix3i(Vector3i(2,5,6).asDiagonal()) << endl; 2 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/MatrixBase_block_int_int.cpp: -------------------------------------------------------------------------------- 1 | Matrix4i m = Matrix4i::Random(); 2 | cout << "Here is the matrix m:" << endl << m << endl; 3 | cout << "Here is m.block<2,2>(1,1):" << endl << m.block<2,2>(1,1) << endl; 4 | m.block<2,2>(1,1).setZero(); 5 | cout << "Now the matrix m is:" << endl << m << endl; 6 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/MatrixBase_block_int_int_int_int.cpp: -------------------------------------------------------------------------------- 1 | Matrix4i m = Matrix4i::Random(); 2 | cout << "Here is the matrix m:" << endl << m << endl; 3 | cout << "Here is m.block(1, 1, 2, 2):" << endl << m.block(1, 1, 2, 2) << endl; 4 | m.block(1, 1, 2, 2).setZero(); 5 | cout << "Now the matrix m is:" << endl << m << endl; 6 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/MatrixBase_bottomLeftCorner_int_int.cpp: -------------------------------------------------------------------------------- 1 | Matrix4i m = Matrix4i::Random(); 2 | cout << "Here is the matrix m:" << endl << m << endl; 3 | cout << "Here is m.bottomLeftCorner(2, 2):" << endl; 4 | cout << m.bottomLeftCorner(2, 2) << endl; 5 | m.bottomLeftCorner(2, 2).setZero(); 6 | cout << "Now the matrix m is:" << endl << m << endl; 7 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/MatrixBase_bottomRightCorner_int_int.cpp: -------------------------------------------------------------------------------- 1 | Matrix4i m = Matrix4i::Random(); 2 | cout << "Here is the matrix m:" << endl << m << endl; 3 | cout << "Here is m.bottomRightCorner(2, 2):" << endl; 4 | cout << m.bottomRightCorner(2, 2) << endl; 5 | m.bottomRightCorner(2, 2).setZero(); 6 | cout << "Now the matrix m is:" << endl << m << endl; 7 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/MatrixBase_bottomRows_int.cpp: -------------------------------------------------------------------------------- 1 | Array44i a = Array44i::Random(); 2 | cout << "Here is the array a:" << endl << a << endl; 3 | cout << "Here is a.bottomRows(2):" << endl; 4 | cout << a.bottomRows(2) << endl; 5 | a.bottomRows(2).setZero(); 6 | cout << "Now the array a is:" << endl << a << endl; 7 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/MatrixBase_cast.cpp: -------------------------------------------------------------------------------- 1 | Matrix2d md = Matrix2d::Identity() * 0.45; 2 | Matrix2f mf = Matrix2f::Identity(); 3 | cout << md + mf.cast() << endl; 4 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/MatrixBase_col.cpp: -------------------------------------------------------------------------------- 1 | Matrix3d m = Matrix3d::Identity(); 2 | m.col(1) = Vector3d(4,5,6); 3 | cout << m << endl; 4 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/MatrixBase_colwise.cpp: -------------------------------------------------------------------------------- 1 | Matrix3d m = Matrix3d::Random(); 2 | cout << "Here is the matrix m:" << endl << m << endl; 3 | cout << "Here is the sum of each column:" << endl << m.colwise().sum() << endl; 4 | cout << "Here is the maximum absolute value of each column:" 5 | << endl << m.cwiseAbs().colwise().maxCoeff() << endl; 6 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/MatrixBase_computeInverseWithCheck.cpp: -------------------------------------------------------------------------------- 1 | Matrix3d m = Matrix3d::Random(); 2 | cout << "Here is the matrix m:" << endl << m << endl; 3 | Matrix3d inverse; 4 | bool invertible; 5 | m.computeInverseWithCheck(inverse,invertible); 6 | if(invertible) { 7 | cout << "It is invertible, and its inverse is:" << endl << inverse << endl; 8 | } 9 | else { 10 | cout << "It is not invertible." << endl; 11 | } 12 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/MatrixBase_cwiseAbs.cpp: -------------------------------------------------------------------------------- 1 | MatrixXd m(2,3); 2 | m << 2, -4, 6, 3 | -5, 1, 0; 4 | cout << m.cwiseAbs() << endl; 5 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/MatrixBase_cwiseAbs2.cpp: -------------------------------------------------------------------------------- 1 | MatrixXd m(2,3); 2 | m << 2, -4, 6, 3 | -5, 1, 0; 4 | cout << m.cwiseAbs2() << endl; 5 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/MatrixBase_cwiseEqual.cpp: -------------------------------------------------------------------------------- 1 | MatrixXi m(2,2); 2 | m << 1, 0, 3 | 1, 1; 4 | cout << "Comparing m with identity matrix:" << endl; 5 | cout << m.cwiseEqual(MatrixXi::Identity(2,2)) << endl; 6 | int count = m.cwiseEqual(MatrixXi::Identity(2,2)).count(); 7 | cout << "Number of coefficients that are equal: " << count << endl; 8 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/MatrixBase_cwiseInverse.cpp: -------------------------------------------------------------------------------- 1 | MatrixXd m(2,3); 2 | m << 2, 0.5, 1, 3 | 3, 0.25, 1; 4 | cout << m.cwiseInverse() << endl; 5 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/MatrixBase_cwiseMax.cpp: -------------------------------------------------------------------------------- 1 | Vector3d v(2,3,4), w(4,2,3); 2 | cout << v.cwiseMax(w) << endl; 3 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/MatrixBase_cwiseMin.cpp: -------------------------------------------------------------------------------- 1 | Vector3d v(2,3,4), w(4,2,3); 2 | cout << v.cwiseMin(w) << endl; 3 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/MatrixBase_cwiseNotEqual.cpp: -------------------------------------------------------------------------------- 1 | MatrixXi m(2,2); 2 | m << 1, 0, 3 | 1, 1; 4 | cout << "Comparing m with identity matrix:" << endl; 5 | cout << m.cwiseNotEqual(MatrixXi::Identity(2,2)) << endl; 6 | int count = m.cwiseNotEqual(MatrixXi::Identity(2,2)).count(); 7 | cout << "Number of coefficients that are not equal: " << count << endl; 8 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/MatrixBase_cwiseProduct.cpp: -------------------------------------------------------------------------------- 1 | Matrix3i a = Matrix3i::Random(), b = Matrix3i::Random(); 2 | Matrix3i c = a.cwiseProduct(b); 3 | cout << "a:\n" << a << "\nb:\n" << b << "\nc:\n" << c << endl; 4 | 5 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/MatrixBase_cwiseQuotient.cpp: -------------------------------------------------------------------------------- 1 | Vector3d v(2,3,4), w(4,2,3); 2 | cout << v.cwiseQuotient(w) << endl; 3 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/MatrixBase_cwiseSqrt.cpp: -------------------------------------------------------------------------------- 1 | Vector3d v(1,2,4); 2 | cout << v.cwiseSqrt() << endl; 3 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/MatrixBase_diagonal.cpp: -------------------------------------------------------------------------------- 1 | Matrix3i m = Matrix3i::Random(); 2 | cout << "Here is the matrix m:" << endl << m << endl; 3 | cout << "Here are the coefficients on the main diagonal of m:" << endl 4 | << m.diagonal() << endl; 5 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/MatrixBase_diagonal_int.cpp: -------------------------------------------------------------------------------- 1 | Matrix4i m = Matrix4i::Random(); 2 | cout << "Here is the matrix m:" << endl << m << endl; 3 | cout << "Here are the coefficients on the 1st super-diagonal and 2nd sub-diagonal of m:" << endl 4 | << m.diagonal(1).transpose() << endl 5 | << m.diagonal(-2).transpose() << endl; 6 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/MatrixBase_diagonal_template_int.cpp: -------------------------------------------------------------------------------- 1 | Matrix4i m = Matrix4i::Random(); 2 | cout << "Here is the matrix m:" << endl << m << endl; 3 | cout << "Here are the coefficients on the 1st super-diagonal and 2nd sub-diagonal of m:" << endl 4 | << m.diagonal<1>().transpose() << endl 5 | << m.diagonal<-2>().transpose() << endl; 6 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/MatrixBase_eigenvalues.cpp: -------------------------------------------------------------------------------- 1 | MatrixXd ones = MatrixXd::Ones(3,3); 2 | VectorXcd eivals = ones.eigenvalues(); 3 | cout << "The eigenvalues of the 3x3 matrix of ones are:" << endl << eivals << endl; 4 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/MatrixBase_end_int.cpp: -------------------------------------------------------------------------------- 1 | RowVector4i v = RowVector4i::Random(); 2 | cout << "Here is the vector v:" << endl << v << endl; 3 | cout << "Here is v.tail(2):" << endl << v.tail(2) << endl; 4 | v.tail(2).setZero(); 5 | cout << "Now the vector v is:" << endl << v << endl; 6 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/MatrixBase_fixedBlock_int_int.cpp: -------------------------------------------------------------------------------- 1 | Matrix4d m = Vector4d(1,2,3,4).asDiagonal(); 2 | cout << "Here is the matrix m:" << endl << m << endl; 3 | cout << "Here is m.fixed<2, 2>(2, 2):" << endl << m.block<2, 2>(2, 2) << endl; 4 | m.block<2, 2>(2, 0) = m.block<2, 2>(2, 2); 5 | cout << "Now the matrix m is:" << endl << m << endl; 6 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/MatrixBase_identity.cpp: -------------------------------------------------------------------------------- 1 | cout << Matrix::Identity() << endl; 2 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/MatrixBase_identity_int_int.cpp: -------------------------------------------------------------------------------- 1 | cout << MatrixXd::Identity(4, 3) << endl; 2 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/MatrixBase_inverse.cpp: -------------------------------------------------------------------------------- 1 | Matrix3d m = Matrix3d::Random(); 2 | cout << "Here is the matrix m:" << endl << m << endl; 3 | cout << "Its inverse is:" << endl << m.inverse() << endl; 4 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/MatrixBase_isDiagonal.cpp: -------------------------------------------------------------------------------- 1 | Matrix3d m = 10000 * Matrix3d::Identity(); 2 | m(0,2) = 1; 3 | cout << "Here's the matrix m:" << endl << m << endl; 4 | cout << "m.isDiagonal() returns: " << m.isDiagonal() << endl; 5 | cout << "m.isDiagonal(1e-3) returns: " << m.isDiagonal(1e-3) << endl; 6 | 7 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/MatrixBase_isIdentity.cpp: -------------------------------------------------------------------------------- 1 | Matrix3d m = Matrix3d::Identity(); 2 | m(0,2) = 1e-4; 3 | cout << "Here's the matrix m:" << endl << m << endl; 4 | cout << "m.isIdentity() returns: " << m.isIdentity() << endl; 5 | cout << "m.isIdentity(1e-3) returns: " << m.isIdentity(1e-3) << endl; 6 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/MatrixBase_isOnes.cpp: -------------------------------------------------------------------------------- 1 | Matrix3d m = Matrix3d::Ones(); 2 | m(0,2) += 1e-4; 3 | cout << "Here's the matrix m:" << endl << m << endl; 4 | cout << "m.isOnes() returns: " << m.isOnes() << endl; 5 | cout << "m.isOnes(1e-3) returns: " << m.isOnes(1e-3) << endl; 6 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/MatrixBase_isOrthogonal.cpp: -------------------------------------------------------------------------------- 1 | Vector3d v(1,0,0); 2 | Vector3d w(1e-4,0,1); 3 | cout << "Here's the vector v:" << endl << v << endl; 4 | cout << "Here's the vector w:" << endl << w << endl; 5 | cout << "v.isOrthogonal(w) returns: " << v.isOrthogonal(w) << endl; 6 | cout << "v.isOrthogonal(w,1e-3) returns: " << v.isOrthogonal(w,1e-3) << endl; 7 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/MatrixBase_isUnitary.cpp: -------------------------------------------------------------------------------- 1 | Matrix3d m = Matrix3d::Identity(); 2 | m(0,2) = 1e-4; 3 | cout << "Here's the matrix m:" << endl << m << endl; 4 | cout << "m.isUnitary() returns: " << m.isUnitary() << endl; 5 | cout << "m.isUnitary(1e-3) returns: " << m.isUnitary(1e-3) << endl; 6 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/MatrixBase_isZero.cpp: -------------------------------------------------------------------------------- 1 | Matrix3d m = Matrix3d::Zero(); 2 | m(0,2) = 1e-4; 3 | cout << "Here's the matrix m:" << endl << m << endl; 4 | cout << "m.isZero() returns: " << m.isZero() << endl; 5 | cout << "m.isZero(1e-3) returns: " << m.isZero(1e-3) << endl; 6 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/MatrixBase_leftCols_int.cpp: -------------------------------------------------------------------------------- 1 | Array44i a = Array44i::Random(); 2 | cout << "Here is the array a:" << endl << a << endl; 3 | cout << "Here is a.leftCols(2):" << endl; 4 | cout << a.leftCols(2) << endl; 5 | a.leftCols(2).setZero(); 6 | cout << "Now the array a is:" << endl << a << endl; 7 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/MatrixBase_noalias.cpp: -------------------------------------------------------------------------------- 1 | Matrix2d a, b, c; a << 1,2,3,4; b << 5,6,7,8; 2 | c.noalias() = a * b; // this computes the product directly to c 3 | cout << c << endl; 4 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/MatrixBase_ones.cpp: -------------------------------------------------------------------------------- 1 | cout << Matrix2d::Ones() << endl; 2 | cout << 6 * RowVector4i::Ones() << endl; 3 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/MatrixBase_ones_int.cpp: -------------------------------------------------------------------------------- 1 | cout << 6 * RowVectorXi::Ones(4) << endl; 2 | cout << VectorXf::Ones(2) << endl; 3 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/MatrixBase_ones_int_int.cpp: -------------------------------------------------------------------------------- 1 | cout << MatrixXi::Ones(2,3) << endl; 2 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/MatrixBase_operatorNorm.cpp: -------------------------------------------------------------------------------- 1 | MatrixXd ones = MatrixXd::Ones(3,3); 2 | cout << "The operator norm of the 3x3 matrix of ones is " 3 | << ones.operatorNorm() << endl; 4 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/MatrixBase_prod.cpp: -------------------------------------------------------------------------------- 1 | Matrix3d m = Matrix3d::Random(); 2 | cout << "Here is the matrix m:" << endl << m << endl; 3 | cout << "Here is the product of all the coefficients:" << endl << m.prod() << endl; 4 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/MatrixBase_random.cpp: -------------------------------------------------------------------------------- 1 | cout << 100 * Matrix2i::Random() << endl; 2 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/MatrixBase_random_int.cpp: -------------------------------------------------------------------------------- 1 | cout << VectorXi::Random(2) << endl; 2 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/MatrixBase_random_int_int.cpp: -------------------------------------------------------------------------------- 1 | cout << MatrixXi::Random(2,3) << endl; 2 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/MatrixBase_replicate.cpp: -------------------------------------------------------------------------------- 1 | MatrixXi m = MatrixXi::Random(2,3); 2 | cout << "Here is the matrix m:" << endl << m << endl; 3 | cout << "m.replicate<3,2>() = ..." << endl; 4 | cout << m.replicate<3,2>() << endl; 5 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/MatrixBase_replicate_int_int.cpp: -------------------------------------------------------------------------------- 1 | Vector3i v = Vector3i::Random(); 2 | cout << "Here is the vector v:" << endl << v << endl; 3 | cout << "v.replicate(2,5) = ..." << endl; 4 | cout << v.replicate(2,5) << endl; 5 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/MatrixBase_reverse.cpp: -------------------------------------------------------------------------------- 1 | MatrixXi m = MatrixXi::Random(3,4); 2 | cout << "Here is the matrix m:" << endl << m << endl; 3 | cout << "Here is the reverse of m:" << endl << m.reverse() << endl; 4 | cout << "Here is the coefficient (1,0) in the reverse of m:" << endl 5 | << m.reverse()(1,0) << endl; 6 | cout << "Let us overwrite this coefficient with the value 4." << endl; 7 | m.reverse()(1,0) = 4; 8 | cout << "Now the matrix m is:" << endl << m << endl; 9 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/MatrixBase_rightCols_int.cpp: -------------------------------------------------------------------------------- 1 | Array44i a = Array44i::Random(); 2 | cout << "Here is the array a:" << endl << a << endl; 3 | cout << "Here is a.rightCols(2):" << endl; 4 | cout << a.rightCols(2) << endl; 5 | a.rightCols(2).setZero(); 6 | cout << "Now the array a is:" << endl << a << endl; 7 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/MatrixBase_row.cpp: -------------------------------------------------------------------------------- 1 | Matrix3d m = Matrix3d::Identity(); 2 | m.row(1) = Vector3d(4,5,6); 3 | cout << m << endl; 4 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/MatrixBase_rowwise.cpp: -------------------------------------------------------------------------------- 1 | Matrix3d m = Matrix3d::Random(); 2 | cout << "Here is the matrix m:" << endl << m << endl; 3 | cout << "Here is the sum of each row:" << endl << m.rowwise().sum() << endl; 4 | cout << "Here is the maximum absolute value of each row:" 5 | << endl << m.cwiseAbs().rowwise().maxCoeff() << endl; 6 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/MatrixBase_segment_int_int.cpp: -------------------------------------------------------------------------------- 1 | RowVector4i v = RowVector4i::Random(); 2 | cout << "Here is the vector v:" << endl << v << endl; 3 | cout << "Here is v.segment(1, 2):" << endl << v.segment(1, 2) << endl; 4 | v.segment(1, 2).setZero(); 5 | cout << "Now the vector v is:" << endl << v << endl; 6 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/MatrixBase_select.cpp: -------------------------------------------------------------------------------- 1 | MatrixXi m(3, 3); 2 | m << 1, 2, 3, 3 | 4, 5, 6, 4 | 7, 8, 9; 5 | m = (m.array() >= 5).select(-m, m); 6 | cout << m << endl; 7 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/MatrixBase_set.cpp: -------------------------------------------------------------------------------- 1 | Matrix3i m1; 2 | m1 << 1, 2, 3, 3 | 4, 5, 6, 4 | 7, 8, 9; 5 | cout << m1 << endl << endl; 6 | Matrix3i m2 = Matrix3i::Identity(); 7 | m2.block(0,0, 2,2) << 10, 11, 12, 13; 8 | cout << m2 << endl << endl; 9 | Vector2i v1; 10 | v1 << 14, 15; 11 | m2 << v1.transpose(), 16, 12 | v1, m1.block(1,1,2,2); 13 | cout << m2 << endl; 14 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/MatrixBase_setIdentity.cpp: -------------------------------------------------------------------------------- 1 | Matrix4i m = Matrix4i::Zero(); 2 | m.block<3,3>(1,0).setIdentity(); 3 | cout << m << endl; 4 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/MatrixBase_setOnes.cpp: -------------------------------------------------------------------------------- 1 | Matrix4i m = Matrix4i::Random(); 2 | m.row(1).setOnes(); 3 | cout << m << endl; 4 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/MatrixBase_setRandom.cpp: -------------------------------------------------------------------------------- 1 | Matrix4i m = Matrix4i::Zero(); 2 | m.col(1).setRandom(); 3 | cout << m << endl; 4 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/MatrixBase_setZero.cpp: -------------------------------------------------------------------------------- 1 | Matrix4i m = Matrix4i::Random(); 2 | m.row(1).setZero(); 3 | cout << m << endl; 4 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/MatrixBase_start_int.cpp: -------------------------------------------------------------------------------- 1 | RowVector4i v = RowVector4i::Random(); 2 | cout << "Here is the vector v:" << endl << v << endl; 3 | cout << "Here is v.head(2):" << endl << v.head(2) << endl; 4 | v.head(2).setZero(); 5 | cout << "Now the vector v is:" << endl << v << endl; 6 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/MatrixBase_template_int_bottomRows.cpp: -------------------------------------------------------------------------------- 1 | Array44i a = Array44i::Random(); 2 | cout << "Here is the array a:" << endl << a << endl; 3 | cout << "Here is a.bottomRows<2>():" << endl; 4 | cout << a.bottomRows<2>() << endl; 5 | a.bottomRows<2>().setZero(); 6 | cout << "Now the array a is:" << endl << a << endl; 7 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/MatrixBase_template_int_end.cpp: -------------------------------------------------------------------------------- 1 | RowVector4i v = RowVector4i::Random(); 2 | cout << "Here is the vector v:" << endl << v << endl; 3 | cout << "Here is v.tail(2):" << endl << v.tail<2>() << endl; 4 | v.tail<2>().setZero(); 5 | cout << "Now the vector v is:" << endl << v << endl; 6 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/MatrixBase_template_int_int_bottomLeftCorner.cpp: -------------------------------------------------------------------------------- 1 | Matrix4i m = Matrix4i::Random(); 2 | cout << "Here is the matrix m:" << endl << m << endl; 3 | cout << "Here is m.bottomLeftCorner<2,2>():" << endl; 4 | cout << m.bottomLeftCorner<2,2>() << endl; 5 | m.bottomLeftCorner<2,2>().setZero(); 6 | cout << "Now the matrix m is:" << endl << m << endl; 7 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/MatrixBase_template_int_int_bottomRightCorner.cpp: -------------------------------------------------------------------------------- 1 | Matrix4i m = Matrix4i::Random(); 2 | cout << "Here is the matrix m:" << endl << m << endl; 3 | cout << "Here is m.bottomRightCorner<2,2>():" << endl; 4 | cout << m.bottomRightCorner<2,2>() << endl; 5 | m.bottomRightCorner<2,2>().setZero(); 6 | cout << "Now the matrix m is:" << endl << m << endl; 7 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/MatrixBase_template_int_int_topLeftCorner.cpp: -------------------------------------------------------------------------------- 1 | Matrix4i m = Matrix4i::Random(); 2 | cout << "Here is the matrix m:" << endl << m << endl; 3 | cout << "Here is m.topLeftCorner<2,2>():" << endl; 4 | cout << m.topLeftCorner<2,2>() << endl; 5 | m.topLeftCorner<2,2>().setZero(); 6 | cout << "Now the matrix m is:" << endl << m << endl; 7 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/MatrixBase_template_int_int_topRightCorner.cpp: -------------------------------------------------------------------------------- 1 | Matrix4i m = Matrix4i::Random(); 2 | cout << "Here is the matrix m:" << endl << m << endl; 3 | cout << "Here is m.topRightCorner<2,2>():" << endl; 4 | cout << m.topRightCorner<2,2>() << endl; 5 | m.topRightCorner<2,2>().setZero(); 6 | cout << "Now the matrix m is:" << endl << m << endl; 7 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/MatrixBase_template_int_leftCols.cpp: -------------------------------------------------------------------------------- 1 | Array44i a = Array44i::Random(); 2 | cout << "Here is the array a:" << endl << a << endl; 3 | cout << "Here is a.leftCols<2>():" << endl; 4 | cout << a.leftCols<2>() << endl; 5 | a.leftCols<2>().setZero(); 6 | cout << "Now the array a is:" << endl << a << endl; 7 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/MatrixBase_template_int_rightCols.cpp: -------------------------------------------------------------------------------- 1 | Array44i a = Array44i::Random(); 2 | cout << "Here is the array a:" << endl << a << endl; 3 | cout << "Here is a.rightCols<2>():" << endl; 4 | cout << a.rightCols<2>() << endl; 5 | a.rightCols<2>().setZero(); 6 | cout << "Now the array a is:" << endl << a << endl; 7 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/MatrixBase_template_int_segment.cpp: -------------------------------------------------------------------------------- 1 | RowVector4i v = RowVector4i::Random(); 2 | cout << "Here is the vector v:" << endl << v << endl; 3 | cout << "Here is v.segment<2>(1):" << endl << v.segment<2>(1) << endl; 4 | v.segment<2>(2).setZero(); 5 | cout << "Now the vector v is:" << endl << v << endl; 6 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/MatrixBase_template_int_start.cpp: -------------------------------------------------------------------------------- 1 | RowVector4i v = RowVector4i::Random(); 2 | cout << "Here is the vector v:" << endl << v << endl; 3 | cout << "Here is v.head(2):" << endl << v.head<2>() << endl; 4 | v.head<2>().setZero(); 5 | cout << "Now the vector v is:" << endl << v << endl; 6 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/MatrixBase_template_int_topRows.cpp: -------------------------------------------------------------------------------- 1 | Array44i a = Array44i::Random(); 2 | cout << "Here is the array a:" << endl << a << endl; 3 | cout << "Here is a.topRows<2>():" << endl; 4 | cout << a.topRows<2>() << endl; 5 | a.topRows<2>().setZero(); 6 | cout << "Now the array a is:" << endl << a << endl; 7 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/MatrixBase_topLeftCorner_int_int.cpp: -------------------------------------------------------------------------------- 1 | Matrix4i m = Matrix4i::Random(); 2 | cout << "Here is the matrix m:" << endl << m << endl; 3 | cout << "Here is m.topLeftCorner(2, 2):" << endl; 4 | cout << m.topLeftCorner(2, 2) << endl; 5 | m.topLeftCorner(2, 2).setZero(); 6 | cout << "Now the matrix m is:" << endl << m << endl; 7 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/MatrixBase_topRightCorner_int_int.cpp: -------------------------------------------------------------------------------- 1 | Matrix4i m = Matrix4i::Random(); 2 | cout << "Here is the matrix m:" << endl << m << endl; 3 | cout << "Here is m.topRightCorner(2, 2):" << endl; 4 | cout << m.topRightCorner(2, 2) << endl; 5 | m.topRightCorner(2, 2).setZero(); 6 | cout << "Now the matrix m is:" << endl << m << endl; 7 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/MatrixBase_topRows_int.cpp: -------------------------------------------------------------------------------- 1 | Array44i a = Array44i::Random(); 2 | cout << "Here is the array a:" << endl << a << endl; 3 | cout << "Here is a.topRows(2):" << endl; 4 | cout << a.topRows(2) << endl; 5 | a.topRows(2).setZero(); 6 | cout << "Now the array a is:" << endl << a << endl; 7 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/MatrixBase_zero.cpp: -------------------------------------------------------------------------------- 1 | cout << Matrix2d::Zero() << endl; 2 | cout << RowVector4i::Zero() << endl; 3 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/MatrixBase_zero_int.cpp: -------------------------------------------------------------------------------- 1 | cout << RowVectorXi::Zero(4) << endl; 2 | cout << VectorXf::Zero(2) << endl; 3 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/MatrixBase_zero_int_int.cpp: -------------------------------------------------------------------------------- 1 | cout << MatrixXi::Zero(2,3) << endl; 2 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/Matrix_resize_NoChange_int.cpp: -------------------------------------------------------------------------------- 1 | MatrixXd m(3,4); 2 | m.resize(NoChange, 5); 3 | cout << "m: " << m.rows() << " rows, " << m.cols() << " cols" << endl; 4 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/Matrix_resize_int.cpp: -------------------------------------------------------------------------------- 1 | VectorXd v(10); 2 | v.resize(3); 3 | RowVector3d w; 4 | w.resize(3); // this is legal, but has no effect 5 | cout << "v: " << v.rows() << " rows, " << v.cols() << " cols" << endl; 6 | cout << "w: " << w.rows() << " rows, " << w.cols() << " cols" << endl; 7 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/Matrix_resize_int_NoChange.cpp: -------------------------------------------------------------------------------- 1 | MatrixXd m(3,4); 2 | m.resize(5, NoChange); 3 | cout << "m: " << m.rows() << " rows, " << m.cols() << " cols" << endl; 4 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/Matrix_setConstant_int.cpp: -------------------------------------------------------------------------------- 1 | VectorXf v; 2 | v.setConstant(3, 5); 3 | cout << v << endl; 4 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/Matrix_setConstant_int_int.cpp: -------------------------------------------------------------------------------- 1 | MatrixXf m; 2 | m.setConstant(3, 3, 5); 3 | cout << m << endl; 4 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/Matrix_setIdentity_int_int.cpp: -------------------------------------------------------------------------------- 1 | MatrixXf m; 2 | m.setIdentity(3, 3); 3 | cout << m << endl; 4 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/Matrix_setOnes_int.cpp: -------------------------------------------------------------------------------- 1 | VectorXf v; 2 | v.setOnes(3); 3 | cout << v << endl; 4 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/Matrix_setOnes_int_int.cpp: -------------------------------------------------------------------------------- 1 | MatrixXf m; 2 | m.setOnes(3, 3); 3 | cout << m << endl; 4 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/Matrix_setRandom_int.cpp: -------------------------------------------------------------------------------- 1 | VectorXf v; 2 | v.setRandom(3); 3 | cout << v << endl; 4 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/Matrix_setRandom_int_int.cpp: -------------------------------------------------------------------------------- 1 | MatrixXf m; 2 | m.setRandom(3, 3); 3 | cout << m << endl; 4 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/Matrix_setZero_int.cpp: -------------------------------------------------------------------------------- 1 | VectorXf v; 2 | v.setZero(3); 3 | cout << v << endl; 4 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/Matrix_setZero_int_int.cpp: -------------------------------------------------------------------------------- 1 | MatrixXf m; 2 | m.setZero(3, 3); 3 | cout << m << endl; 4 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/PartialPivLU_solve.cpp: -------------------------------------------------------------------------------- 1 | MatrixXd A = MatrixXd::Random(3,3); 2 | MatrixXd B = MatrixXd::Random(3,2); 3 | cout << "Here is the invertible matrix A:" << endl << A << endl; 4 | cout << "Here is the matrix B:" << endl << B << endl; 5 | MatrixXd X = A.lu().solve(B); 6 | cout << "Here is the (unique) solution X to the equation AX=B:" << endl << X << endl; 7 | cout << "Relative error: " << (A*X-B).norm() / B.norm() << endl; 8 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/PartialRedux_count.cpp: -------------------------------------------------------------------------------- 1 | Matrix3d m = Matrix3d::Random(); 2 | cout << "Here is the matrix m:" << endl << m << endl; 3 | cout << "Here is the count of elements larger or equal than 0.5 of each row:" << endl << (m.array() >= 0.5).rowwise().count() << endl; 4 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/PartialRedux_maxCoeff.cpp: -------------------------------------------------------------------------------- 1 | Matrix3d m = Matrix3d::Random(); 2 | cout << "Here is the matrix m:" << endl << m << endl; 3 | cout << "Here is the maximum of each column:" << endl << m.colwise().maxCoeff() << endl; 4 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/PartialRedux_minCoeff.cpp: -------------------------------------------------------------------------------- 1 | Matrix3d m = Matrix3d::Random(); 2 | cout << "Here is the matrix m:" << endl << m << endl; 3 | cout << "Here is the minimum of each column:" << endl << m.colwise().minCoeff() << endl; 4 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/PartialRedux_norm.cpp: -------------------------------------------------------------------------------- 1 | Matrix3d m = Matrix3d::Random(); 2 | cout << "Here is the matrix m:" << endl << m << endl; 3 | cout << "Here is the norm of each column:" << endl << m.colwise().norm() << endl; 4 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/PartialRedux_prod.cpp: -------------------------------------------------------------------------------- 1 | Matrix3d m = Matrix3d::Random(); 2 | cout << "Here is the matrix m:" << endl << m << endl; 3 | cout << "Here is the product of each row:" << endl << m.rowwise().prod() << endl; 4 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/PartialRedux_squaredNorm.cpp: -------------------------------------------------------------------------------- 1 | Matrix3d m = Matrix3d::Random(); 2 | cout << "Here is the matrix m:" << endl << m << endl; 3 | cout << "Here is the square norm of each row:" << endl << m.rowwise().squaredNorm() << endl; 4 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/PartialRedux_sum.cpp: -------------------------------------------------------------------------------- 1 | Matrix3d m = Matrix3d::Random(); 2 | cout << "Here is the matrix m:" << endl << m << endl; 3 | cout << "Here is the sum of each row:" << endl << m.rowwise().sum() << endl; 4 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/RealSchur_compute.cpp: -------------------------------------------------------------------------------- 1 | MatrixXf A = MatrixXf::Random(4,4); 2 | RealSchur schur(4); 3 | schur.compute(A, /* computeU = */ false); 4 | cout << "The matrix T in the decomposition of A is:" << endl << schur.matrixT() << endl; 5 | schur.compute(A.inverse(), /* computeU = */ false); 6 | cout << "The matrix T in the decomposition of A^(-1) is:" << endl << schur.matrixT() << endl; 7 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/SelfAdjointEigenSolver_SelfAdjointEigenSolver.cpp: -------------------------------------------------------------------------------- 1 | SelfAdjointEigenSolver es; 2 | Matrix4f X = Matrix4f::Random(4,4); 3 | Matrix4f A = X + X.transpose(); 4 | es.compute(A); 5 | cout << "The eigenvalues of A are: " << es.eigenvalues().transpose() << endl; 6 | es.compute(A + Matrix4f::Identity(4,4)); // re-use es to compute eigenvalues of A+I 7 | cout << "The eigenvalues of A+I are: " << es.eigenvalues().transpose() << endl; 8 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/SelfAdjointEigenSolver_compute_MatrixType.cpp: -------------------------------------------------------------------------------- 1 | SelfAdjointEigenSolver es(4); 2 | MatrixXf X = MatrixXf::Random(4,4); 3 | MatrixXf A = X + X.transpose(); 4 | es.compute(A); 5 | cout << "The eigenvalues of A are: " << es.eigenvalues().transpose() << endl; 6 | es.compute(A + MatrixXf::Identity(4,4)); // re-use es to compute eigenvalues of A+I 7 | cout << "The eigenvalues of A+I are: " << es.eigenvalues().transpose() << endl; 8 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/SelfAdjointEigenSolver_eigenvalues.cpp: -------------------------------------------------------------------------------- 1 | MatrixXd ones = MatrixXd::Ones(3,3); 2 | SelfAdjointEigenSolver es(ones); 3 | cout << "The eigenvalues of the 3x3 matrix of ones are:" 4 | << endl << es.eigenvalues() << endl; 5 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/SelfAdjointEigenSolver_eigenvectors.cpp: -------------------------------------------------------------------------------- 1 | MatrixXd ones = MatrixXd::Ones(3,3); 2 | SelfAdjointEigenSolver es(ones); 3 | cout << "The first eigenvector of the 3x3 matrix of ones is:" 4 | << endl << es.eigenvectors().col(1) << endl; 5 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/SelfAdjointEigenSolver_operatorSqrt.cpp: -------------------------------------------------------------------------------- 1 | MatrixXd X = MatrixXd::Random(4,4); 2 | MatrixXd A = X * X.transpose(); 3 | cout << "Here is a random positive-definite matrix, A:" << endl << A << endl << endl; 4 | 5 | SelfAdjointEigenSolver es(A); 6 | MatrixXd sqrtA = es.operatorSqrt(); 7 | cout << "The square root of A is: " << endl << sqrtA << endl; 8 | cout << "If we square this, we get: " << endl << sqrtA*sqrtA << endl; 9 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/SelfAdjointView_eigenvalues.cpp: -------------------------------------------------------------------------------- 1 | MatrixXd ones = MatrixXd::Ones(3,3); 2 | VectorXd eivals = ones.selfadjointView().eigenvalues(); 3 | cout << "The eigenvalues of the 3x3 matrix of ones are:" << endl << eivals << endl; 4 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/SelfAdjointView_operatorNorm.cpp: -------------------------------------------------------------------------------- 1 | MatrixXd ones = MatrixXd::Ones(3,3); 2 | cout << "The operator norm of the 3x3 matrix of ones is " 3 | << ones.selfadjointView().operatorNorm() << endl; 4 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/TopicAliasing_block.cpp: -------------------------------------------------------------------------------- 1 | MatrixXi mat(3,3); 2 | mat << 1, 2, 3, 4, 5, 6, 7, 8, 9; 3 | cout << "Here is the matrix mat:\n" << mat << endl; 4 | 5 | // This assignment shows the aliasing problem 6 | mat.bottomRightCorner(2,2) = mat.topLeftCorner(2,2); 7 | cout << "After the assignment, mat = \n" << mat << endl; 8 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/TopicAliasing_block_correct.cpp: -------------------------------------------------------------------------------- 1 | MatrixXi mat(3,3); 2 | mat << 1, 2, 3, 4, 5, 6, 7, 8, 9; 3 | cout << "Here is the matrix mat:\n" << mat << endl; 4 | 5 | // The eval() solves the aliasing problem 6 | mat.bottomRightCorner(2,2) = mat.topLeftCorner(2,2).eval(); 7 | cout << "After the assignment, mat = \n" << mat << endl; 8 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/TopicAliasing_mult1.cpp: -------------------------------------------------------------------------------- 1 | MatrixXf matA(2,2); 2 | matA << 2, 0, 0, 2; 3 | matA = matA * matA; 4 | cout << matA; 5 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/TopicAliasing_mult2.cpp: -------------------------------------------------------------------------------- 1 | MatrixXf matA(2,2), matB(2,2); 2 | matA << 2, 0, 0, 2; 3 | 4 | // Simple but not quite as efficient 5 | matB = matA * matA; 6 | cout << matB << endl << endl; 7 | 8 | // More complicated but also more efficient 9 | matB.noalias() = matA * matA; 10 | cout << matB; 11 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/TopicAliasing_mult3.cpp: -------------------------------------------------------------------------------- 1 | MatrixXf matA(2,2); 2 | matA << 2, 0, 0, 2; 3 | matA.noalias() = matA * matA; 4 | cout << matA; 5 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/Tridiagonalization_householderCoefficients.cpp: -------------------------------------------------------------------------------- 1 | Matrix4d X = Matrix4d::Random(4,4); 2 | Matrix4d A = X + X.transpose(); 3 | cout << "Here is a random symmetric 4x4 matrix:" << endl << A << endl; 4 | Tridiagonalization triOfA(A); 5 | Vector3d hc = triOfA.householderCoefficients(); 6 | cout << "The vector of Householder coefficients is:" << endl << hc << endl; 7 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/Tridiagonalization_packedMatrix.cpp: -------------------------------------------------------------------------------- 1 | Matrix4d X = Matrix4d::Random(4,4); 2 | Matrix4d A = X + X.transpose(); 3 | cout << "Here is a random symmetric 4x4 matrix:" << endl << A << endl; 4 | Tridiagonalization triOfA(A); 5 | Matrix4d pm = triOfA.packedMatrix(); 6 | cout << "The packed matrix M is:" << endl << pm << endl; 7 | cout << "The diagonal and subdiagonal corresponds to the matrix T, which is:" 8 | << endl << triOfA.matrixT() << endl; 9 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/Tutorial_AdvancedInitialization_Block.cpp: -------------------------------------------------------------------------------- 1 | MatrixXf matA(2, 2); 2 | matA << 1, 2, 3, 4; 3 | MatrixXf matB(4, 4); 4 | matB << matA, matA/10, matA/10, matA; 5 | std::cout << matB << std::endl; 6 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/Tutorial_AdvancedInitialization_CommaTemporary.cpp: -------------------------------------------------------------------------------- 1 | MatrixXf mat = MatrixXf::Random(2, 3); 2 | std::cout << mat << std::endl << std::endl; 3 | mat = (MatrixXf(2,2) << 0, 1, 1, 0).finished() * mat; 4 | std::cout << mat << std::endl; 5 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/Tutorial_AdvancedInitialization_Join.cpp: -------------------------------------------------------------------------------- 1 | RowVectorXd vec1(3); 2 | vec1 << 1, 2, 3; 3 | std::cout << "vec1 = " << vec1 << std::endl; 4 | 5 | RowVectorXd vec2(4); 6 | vec2 << 1, 4, 9, 16;; 7 | std::cout << "vec2 = " << vec2 << std::endl; 8 | 9 | RowVectorXd joined(7); 10 | joined << vec1, vec2; 11 | std::cout << "joined = " << joined << std::endl; 12 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/Tutorial_AdvancedInitialization_LinSpaced.cpp: -------------------------------------------------------------------------------- 1 | ArrayXXf table(10, 4); 2 | table.col(0) = ArrayXf::LinSpaced(10, 0, 90); 3 | table.col(1) = M_PI / 180 * table.col(0); 4 | table.col(2) = table.col(1).sin(); 5 | table.col(3) = table.col(1).cos(); 6 | std::cout << " Degrees Radians Sine Cosine\n"; 7 | std::cout << table << std::endl; 8 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/Tutorial_AdvancedInitialization_Zero.cpp: -------------------------------------------------------------------------------- 1 | std::cout << "A fixed-size array:\n"; 2 | Array33f a1 = Array33f::Zero(); 3 | std::cout << a1 << "\n\n"; 4 | 5 | 6 | std::cout << "A one-dimensional dynamic-size array:\n"; 7 | ArrayXf a2 = ArrayXf::Zero(3); 8 | std::cout << a2 << "\n\n"; 9 | 10 | 11 | std::cout << "A two-dimensional dynamic-size array:\n"; 12 | ArrayXXf a3 = ArrayXXf::Zero(3, 4); 13 | std::cout << a3 << "\n"; 14 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/Tutorial_commainit_01.cpp: -------------------------------------------------------------------------------- 1 | Matrix3f m; 2 | m << 1, 2, 3, 3 | 4, 5, 6, 4 | 7, 8, 9; 5 | std::cout << m; 6 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/Tutorial_commainit_01b.cpp: -------------------------------------------------------------------------------- 1 | Matrix3f m; 2 | m.row(0) << 1, 2, 3; 3 | m.block(1,0,2,2) << 4, 5, 7, 8; 4 | m.col(2).tail(2) << 6, 9; 5 | std::cout << m; 6 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/Tutorial_commainit_02.cpp: -------------------------------------------------------------------------------- 1 | int rows=5, cols=5; 2 | MatrixXf m(rows,cols); 3 | m << (Matrix3f() << 1, 2, 3, 4, 5, 6, 7, 8, 9).finished(), 4 | MatrixXf::Zero(3,cols-3), 5 | MatrixXf::Zero(rows-3,3), 6 | MatrixXf::Identity(rows-3,cols-3); 7 | cout << m; 8 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/Tutorial_solve_matrix_inverse.cpp: -------------------------------------------------------------------------------- 1 | Matrix3f A; 2 | Vector3f b; 3 | A << 1,2,3, 4,5,6, 7,8,10; 4 | b << 3, 3, 4; 5 | Vector3f x = A.inverse() * b; 6 | cout << "The solution is:" << endl << x << endl; 7 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/Tutorial_solve_multiple_rhs.cpp: -------------------------------------------------------------------------------- 1 | Matrix3f A(3,3); 2 | A << 1,2,3, 4,5,6, 7,8,10; 3 | Matrix B; 4 | B << 3,1, 3,1, 4,1; 5 | Matrix X; 6 | X = A.fullPivLu().solve(B); 7 | cout << "The solution with right-hand side (3,3,4) is:" << endl; 8 | cout << X.col(0) << endl; 9 | cout << "The solution with right-hand side (1,1,1) is:" << endl; 10 | cout << X.col(1) << endl; 11 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/Tutorial_solve_singular.cpp: -------------------------------------------------------------------------------- 1 | Matrix3f A; 2 | Vector3f b; 3 | A << 1,2,3, 4,5,6, 7,8,9; 4 | b << 3, 3, 4; 5 | cout << "Here is the matrix A:" << endl << A << endl; 6 | cout << "Here is the vector b:" << endl << b << endl; 7 | Vector3f x; 8 | x = A.lu().solve(b); 9 | cout << "The solution is:" << endl << x << endl; 10 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/Tutorial_solve_triangular.cpp: -------------------------------------------------------------------------------- 1 | Matrix3f A; 2 | Vector3f b; 3 | A << 1,2,3, 0,5,6, 0,0,10; 4 | b << 3, 3, 4; 5 | cout << "Here is the matrix A:" << endl << A << endl; 6 | cout << "Here is the vector b:" << endl << b << endl; 7 | Vector3f x = A.triangularView().solve(b); 8 | cout << "The solution is:" << endl << x << endl; 9 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/Tutorial_solve_triangular_inplace.cpp: -------------------------------------------------------------------------------- 1 | Matrix3f A; 2 | Vector3f b; 3 | A << 1,2,3, 0,5,6, 0,0,10; 4 | b << 3, 3, 4; 5 | A.triangularView().solveInPlace(b); 6 | cout << "The solution is:" << endl << b << endl; 7 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/compile_snippet.cpp.in: -------------------------------------------------------------------------------- 1 | #include 2 | #include 3 | 4 | using namespace Eigen; 5 | using namespace std; 6 | 7 | int main(int, char**) 8 | { 9 | cout.precision(3); 10 | ${snippet_source_code} 11 | return 0; 12 | } 13 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/tut_arithmetic_transpose_aliasing.cpp: -------------------------------------------------------------------------------- 1 | Matrix2i a; a << 1, 2, 3, 4; 2 | cout << "Here is the matrix a:\n" << a << endl; 3 | 4 | a = a.transpose(); // !!! do NOT do this !!! 5 | cout << "and the result of the aliasing effect:\n" << a << endl; -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/tut_arithmetic_transpose_conjugate.cpp: -------------------------------------------------------------------------------- 1 | MatrixXcf a = MatrixXcf::Random(2,2); 2 | cout << "Here is the matrix a\n" << a << endl; 3 | 4 | cout << "Here is the matrix a^T\n" << a.transpose() << endl; 5 | 6 | 7 | cout << "Here is the conjugate of a\n" << a.conjugate() << endl; 8 | 9 | 10 | cout << "Here is the matrix a^*\n" << a.adjoint() << endl; 11 | 12 | 13 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/tut_arithmetic_transpose_inplace.cpp: -------------------------------------------------------------------------------- 1 | MatrixXf a(2,3); a << 1, 2, 3, 4, 5, 6; 2 | cout << "Here is the initial matrix a:\n" << a << endl; 3 | 4 | 5 | a.transposeInPlace(); 6 | cout << "and after being transposed:\n" << a << endl; -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/doc/snippets/tut_matrix_assignment_resizing.cpp: -------------------------------------------------------------------------------- 1 | MatrixXf a(2,2); 2 | std::cout << "a is of size " << a.rows() << "x" << a.cols() << std::endl; 3 | MatrixXf b(3,3); 4 | a = b; 5 | std::cout << "a is now of size " << a.rows() << "x" << a.cols() << std::endl; 6 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/eigen3.pc.in: -------------------------------------------------------------------------------- 1 | Name: Eigen3 2 | Description: A C++ template library for linear algebra: vectors, matrices, and related algorithms 3 | Requires: 4 | Version: ${EIGEN_VERSION_NUMBER} 5 | Libs: 6 | Cflags: -I${INCLUDE_INSTALL_DIR} 7 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/failtest/block_nonconst_ctor_on_const_xpr_0.cpp: -------------------------------------------------------------------------------- 1 | #include "../Eigen/Core" 2 | 3 | #ifdef EIGEN_SHOULD_FAIL_TO_BUILD 4 | #define CV_QUALIFIER const 5 | #else 6 | #define CV_QUALIFIER 7 | #endif 8 | 9 | using namespace Eigen; 10 | 11 | void foo(CV_QUALIFIER Matrix3d &m){ 12 | Block b(m,0,0); 13 | } 14 | 15 | int main() {} 16 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/failtest/block_nonconst_ctor_on_const_xpr_1.cpp: -------------------------------------------------------------------------------- 1 | #include "../Eigen/Core" 2 | 3 | #ifdef EIGEN_SHOULD_FAIL_TO_BUILD 4 | #define CV_QUALIFIER const 5 | #else 6 | #define CV_QUALIFIER 7 | #endif 8 | 9 | using namespace Eigen; 10 | 11 | void foo(CV_QUALIFIER Matrix3d &m){ 12 | Block b(m,0,0,3,3); 13 | } 14 | 15 | int main() {} 16 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/failtest/block_nonconst_ctor_on_const_xpr_2.cpp: -------------------------------------------------------------------------------- 1 | #include "../Eigen/Core" 2 | 3 | #ifdef EIGEN_SHOULD_FAIL_TO_BUILD 4 | #define CV_QUALIFIER const 5 | #else 6 | #define CV_QUALIFIER 7 | #endif 8 | 9 | using namespace Eigen; 10 | 11 | void foo(CV_QUALIFIER Matrix3d &m){ 12 | // row/column constructor 13 | Block b(m,0); 14 | } 15 | 16 | int main() {} 17 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/failtest/block_on_const_type_actually_const_0.cpp: -------------------------------------------------------------------------------- 1 | #include "../Eigen/Core" 2 | 3 | #ifdef EIGEN_SHOULD_FAIL_TO_BUILD 4 | #define CV_QUALIFIER const 5 | #else 6 | #define CV_QUALIFIER 7 | #endif 8 | 9 | using namespace Eigen; 10 | 11 | void foo(){ 12 | Matrix3f m; 13 | Block(m, 0, 0, 3, 3).coeffRef(0, 0) = 1.0f; 14 | } 15 | 16 | int main() {} 17 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/failtest/block_on_const_type_actually_const_1.cpp: -------------------------------------------------------------------------------- 1 | #include "../Eigen/Core" 2 | 3 | #ifdef EIGEN_SHOULD_FAIL_TO_BUILD 4 | #define CV_QUALIFIER const 5 | #else 6 | #define CV_QUALIFIER 7 | #endif 8 | 9 | using namespace Eigen; 10 | 11 | void foo(){ 12 | MatrixXf m; 13 | Block(m, 0, 0).coeffRef(0, 0) = 1.0f; 14 | } 15 | 16 | int main() {} 17 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/failtest/const_qualified_block_method_retval_0.cpp: -------------------------------------------------------------------------------- 1 | #include "../Eigen/Core" 2 | 3 | #ifdef EIGEN_SHOULD_FAIL_TO_BUILD 4 | #define CV_QUALIFIER const 5 | #else 6 | #define CV_QUALIFIER 7 | #endif 8 | 9 | using namespace Eigen; 10 | 11 | void foo(CV_QUALIFIER Matrix3d &m){ 12 | Block b(m.block<3,3>(0,0)); 13 | } 14 | 15 | int main() {} 16 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/failtest/const_qualified_block_method_retval_1.cpp: -------------------------------------------------------------------------------- 1 | #include "../Eigen/Core" 2 | 3 | #ifdef EIGEN_SHOULD_FAIL_TO_BUILD 4 | #define CV_QUALIFIER const 5 | #else 6 | #define CV_QUALIFIER 7 | #endif 8 | 9 | using namespace Eigen; 10 | 11 | void foo(CV_QUALIFIER Matrix3d &m){ 12 | Block b(m.block(0,0,3,3)); 13 | } 14 | 15 | int main() {} 16 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/failtest/const_qualified_diagonal_method_retval.cpp: -------------------------------------------------------------------------------- 1 | #include "../Eigen/Core" 2 | 3 | #ifdef EIGEN_SHOULD_FAIL_TO_BUILD 4 | #define CV_QUALIFIER const 5 | #else 6 | #define CV_QUALIFIER 7 | #endif 8 | 9 | using namespace Eigen; 10 | 11 | void foo(CV_QUALIFIER Matrix3d &m){ 12 | Diagonal b(m.diagonal()); 13 | } 14 | 15 | int main() {} 16 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/failtest/const_qualified_transpose_method_retval.cpp: -------------------------------------------------------------------------------- 1 | #include "../Eigen/Core" 2 | 3 | #ifdef EIGEN_SHOULD_FAIL_TO_BUILD 4 | #define CV_QUALIFIER const 5 | #else 6 | #define CV_QUALIFIER 7 | #endif 8 | 9 | using namespace Eigen; 10 | 11 | void foo(CV_QUALIFIER Matrix3d &m){ 12 | Transpose b(m.transpose()); 13 | } 14 | 15 | int main() {} 16 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/failtest/diagonal_nonconst_ctor_on_const_xpr.cpp: -------------------------------------------------------------------------------- 1 | #include "../Eigen/Core" 2 | 3 | #ifdef EIGEN_SHOULD_FAIL_TO_BUILD 4 | #define CV_QUALIFIER const 5 | #else 6 | #define CV_QUALIFIER 7 | #endif 8 | 9 | using namespace Eigen; 10 | 11 | void foo(CV_QUALIFIER Matrix3d &m){ 12 | Diagonal d(m); 13 | } 14 | 15 | int main() {} 16 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/failtest/diagonal_on_const_type_actually_const.cpp: -------------------------------------------------------------------------------- 1 | #include "../Eigen/Core" 2 | 3 | #ifdef EIGEN_SHOULD_FAIL_TO_BUILD 4 | #define CV_QUALIFIER const 5 | #else 6 | #define CV_QUALIFIER 7 | #endif 8 | 9 | using namespace Eigen; 10 | 11 | void foo(){ 12 | MatrixXf m; 13 | Diagonal(m).coeffRef(0) = 1.0f; 14 | } 15 | 16 | int main() {} 17 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/failtest/failtest_sanity_check.cpp: -------------------------------------------------------------------------------- 1 | #ifdef EIGEN_SHOULD_FAIL_TO_BUILD 2 | This is just some text that won't compile as a C++ file, as a basic sanity check for failtest. 3 | #else 4 | int main() {} 5 | #endif 6 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/failtest/map_nonconst_ctor_on_const_ptr_0.cpp: -------------------------------------------------------------------------------- 1 | #include "../Eigen/Core" 2 | 3 | #ifdef EIGEN_SHOULD_FAIL_TO_BUILD 4 | #define CV_QUALIFIER const 5 | #else 6 | #define CV_QUALIFIER 7 | #endif 8 | 9 | using namespace Eigen; 10 | 11 | void foo(CV_QUALIFIER float *ptr){ 12 | Map m(ptr); 13 | } 14 | 15 | int main() {} 16 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/failtest/map_nonconst_ctor_on_const_ptr_1.cpp: -------------------------------------------------------------------------------- 1 | #include "../Eigen/Core" 2 | 3 | #ifdef EIGEN_SHOULD_FAIL_TO_BUILD 4 | #define CV_QUALIFIER const 5 | #else 6 | #define CV_QUALIFIER 7 | #endif 8 | 9 | using namespace Eigen; 10 | 11 | void foo(CV_QUALIFIER float *ptr, DenseIndex size){ 12 | Map m(ptr, size); 13 | } 14 | 15 | int main() {} 16 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/failtest/map_nonconst_ctor_on_const_ptr_2.cpp: -------------------------------------------------------------------------------- 1 | #include "../Eigen/Core" 2 | 3 | #ifdef EIGEN_SHOULD_FAIL_TO_BUILD 4 | #define CV_QUALIFIER const 5 | #else 6 | #define CV_QUALIFIER 7 | #endif 8 | 9 | using namespace Eigen; 10 | 11 | void foo(CV_QUALIFIER float *ptr, DenseIndex rows, DenseIndex cols){ 12 | Map m(ptr, rows, cols); 13 | } 14 | 15 | int main() {} 16 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/failtest/map_nonconst_ctor_on_const_ptr_3.cpp: -------------------------------------------------------------------------------- 1 | #include "../Eigen/Core" 2 | 3 | #ifdef EIGEN_SHOULD_FAIL_TO_BUILD 4 | #define CV_QUALIFIER const 5 | #else 6 | #define CV_QUALIFIER 7 | #endif 8 | 9 | using namespace Eigen; 10 | 11 | void foo(CV_QUALIFIER float *ptr, DenseIndex rows, DenseIndex cols){ 12 | Map > m(ptr, rows, cols, InnerStride<2>()); 13 | } 14 | 15 | int main() {} 16 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/failtest/map_nonconst_ctor_on_const_ptr_4.cpp: -------------------------------------------------------------------------------- 1 | #include "../Eigen/Core" 2 | 3 | #ifdef EIGEN_SHOULD_FAIL_TO_BUILD 4 | #define CV_QUALIFIER 5 | #else 6 | #define CV_QUALIFIER const 7 | #endif 8 | 9 | using namespace Eigen; 10 | 11 | void foo(const float *ptr, DenseIndex rows, DenseIndex cols){ 12 | Map > m(ptr, rows, cols, OuterStride<>(2)); 13 | } 14 | 15 | int main() {} 16 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/failtest/map_on_const_type_actually_const_0.cpp: -------------------------------------------------------------------------------- 1 | #include "../Eigen/Core" 2 | 3 | #ifdef EIGEN_SHOULD_FAIL_TO_BUILD 4 | #define CV_QUALIFIER const 5 | #else 6 | #define CV_QUALIFIER 7 | #endif 8 | 9 | using namespace Eigen; 10 | 11 | void foo(float *ptr){ 12 | Map(ptr, 1, 1).coeffRef(0,0) = 1.0f; 13 | } 14 | 15 | int main() {} 16 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/failtest/map_on_const_type_actually_const_1.cpp: -------------------------------------------------------------------------------- 1 | #include "../Eigen/Core" 2 | 3 | #ifdef EIGEN_SHOULD_FAIL_TO_BUILD 4 | #define CV_QUALIFIER const 5 | #else 6 | #define CV_QUALIFIER 7 | #endif 8 | 9 | using namespace Eigen; 10 | 11 | void foo(float *ptr){ 12 | Map(ptr).coeffRef(0) = 1.0f; 13 | } 14 | 15 | int main() {} 16 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/failtest/transpose_nonconst_ctor_on_const_xpr.cpp: -------------------------------------------------------------------------------- 1 | #include "../Eigen/Core" 2 | 3 | #ifdef EIGEN_SHOULD_FAIL_TO_BUILD 4 | #define CV_QUALIFIER const 5 | #else 6 | #define CV_QUALIFIER 7 | #endif 8 | 9 | using namespace Eigen; 10 | 11 | void foo(CV_QUALIFIER Matrix3d &m){ 12 | Transpose t(m); 13 | } 14 | 15 | int main() {} 16 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/failtest/transpose_on_const_type_actually_const.cpp: -------------------------------------------------------------------------------- 1 | #include "../Eigen/Core" 2 | 3 | #ifdef EIGEN_SHOULD_FAIL_TO_BUILD 4 | #define CV_QUALIFIER const 5 | #else 6 | #define CV_QUALIFIER 7 | #endif 8 | 9 | using namespace Eigen; 10 | 11 | void foo(){ 12 | MatrixXf m; 13 | Transpose(m).coeffRef(0, 0) = 1.0f; 14 | } 15 | 16 | int main() {} 17 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/scripts/CMakeLists.txt: -------------------------------------------------------------------------------- 1 | get_property(EIGEN_TESTS_LIST GLOBAL PROPERTY EIGEN_TESTS_LIST) 2 | configure_file(buildtests.in ${CMAKE_BINARY_DIR}/buildtests.sh @ONLY) 3 | 4 | configure_file(check.in ${CMAKE_BINARY_DIR}/check.sh COPYONLY) 5 | configure_file(debug.in ${CMAKE_BINARY_DIR}/debug.sh COPYONLY) 6 | configure_file(release.in ${CMAKE_BINARY_DIR}/release.sh COPYONLY) 7 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/scripts/debug.in: -------------------------------------------------------------------------------- 1 | #!/bin/sh 2 | 3 | cmake -DCMAKE_BUILD_TYPE=Debug . 4 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/scripts/release.in: -------------------------------------------------------------------------------- 1 | #!/bin/sh 2 | 3 | cmake -DCMAKE_BUILD_TYPE=Release . 4 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/signature_of_eigen3_matrix_library: -------------------------------------------------------------------------------- 1 | This file is just there as a signature to help identify directories containing Eigen3. When writing a script looking for Eigen3, just look for this file. This is especially useful to help disambiguate with Eigen2... 2 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/test/runtest.sh: -------------------------------------------------------------------------------- 1 | #!/bin/bash 2 | 3 | black='\E[30m' 4 | red='\E[31m' 5 | green='\E[32m' 6 | yellow='\E[33m' 7 | blue='\E[34m' 8 | magenta='\E[35m' 9 | cyan='\E[36m' 10 | white='\E[37m' 11 | 12 | if ! ./$1 > /dev/null 2> .runtest.log ; then 13 | echo -e $red Test $1 failed: $black 14 | echo -e $blue 15 | cat .runtest.log 16 | echo -e $black 17 | exit 1 18 | else 19 | echo -e $green Test $1 passed$black 20 | fi 21 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/unsupported/CMakeLists.txt: -------------------------------------------------------------------------------- 1 | add_subdirectory(Eigen) 2 | add_subdirectory(doc EXCLUDE_FROM_ALL) 3 | if(EIGEN_LEAVE_TEST_IN_ALL_TARGET) 4 | add_subdirectory(test) # can't do EXCLUDE_FROM_ALL here, breaks CTest 5 | else() 6 | add_subdirectory(test EXCLUDE_FROM_ALL) 7 | endif() 8 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/unsupported/Eigen/MoreVectorization: -------------------------------------------------------------------------------- 1 | #ifndef EIGEN_MOREVECTORIZATION_MODULE_H 2 | #define EIGEN_MOREVECTORIZATION_MODULE_H 3 | 4 | #include 5 | 6 | namespace Eigen { 7 | 8 | /** \ingroup Unsupported_modules 9 | * \defgroup MoreVectorization More vectorization module 10 | */ 11 | 12 | #include "src/MoreVectorization/MathFunctions.h" 13 | 14 | } 15 | 16 | #endif // EIGEN_MOREVECTORIZATION_MODULE_H 17 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/unsupported/Eigen/src/AutoDiff/CMakeLists.txt: -------------------------------------------------------------------------------- 1 | FILE(GLOB Eigen_AutoDiff_SRCS "*.h") 2 | 3 | INSTALL(FILES 4 | ${Eigen_AutoDiff_SRCS} 5 | DESTINATION ${INCLUDE_INSTALL_DIR}/unsupported/Eigen/src/AutoDiff COMPONENT Devel 6 | ) 7 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/unsupported/Eigen/src/BVH/CMakeLists.txt: -------------------------------------------------------------------------------- 1 | FILE(GLOB Eigen_BVH_SRCS "*.h") 2 | 3 | INSTALL(FILES 4 | ${Eigen_BVH_SRCS} 5 | DESTINATION ${INCLUDE_INSTALL_DIR}/unsupported/Eigen/src/BVH COMPONENT Devel 6 | ) 7 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/unsupported/Eigen/src/FFT/CMakeLists.txt: -------------------------------------------------------------------------------- 1 | FILE(GLOB Eigen_FFT_SRCS "*.h") 2 | 3 | INSTALL(FILES 4 | ${Eigen_FFT_SRCS} 5 | DESTINATION ${INCLUDE_INSTALL_DIR}/unsupported/Eigen/src/FFT COMPONENT Devel 6 | ) 7 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/unsupported/Eigen/src/IterativeSolvers/CMakeLists.txt: -------------------------------------------------------------------------------- 1 | FILE(GLOB Eigen_IterativeSolvers_SRCS "*.h") 2 | 3 | INSTALL(FILES 4 | ${Eigen_IterativeSolvers_SRCS} 5 | DESTINATION ${INCLUDE_INSTALL_DIR}/unsupported/Eigen/src/IterativeSolvers COMPONENT Devel 6 | ) 7 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/unsupported/Eigen/src/KroneckerProduct/CMakeLists.txt: -------------------------------------------------------------------------------- 1 | FILE(GLOB Eigen_KroneckerProduct_SRCS "*.h") 2 | 3 | INSTALL(FILES 4 | ${Eigen_KroneckerProduct_SRCS} 5 | DESTINATION ${INCLUDE_INSTALL_DIR}/unsupported/Eigen/src/KroneckerProduct COMPONENT Devel 6 | ) 7 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/unsupported/Eigen/src/MatrixFunctions/CMakeLists.txt: -------------------------------------------------------------------------------- 1 | FILE(GLOB Eigen_MatrixFunctions_SRCS "*.h") 2 | 3 | INSTALL(FILES 4 | ${Eigen_MatrixFunctions_SRCS} 5 | DESTINATION ${INCLUDE_INSTALL_DIR}/unsupported/Eigen/src/MatrixFunctions COMPONENT Devel 6 | ) 7 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/unsupported/Eigen/src/MoreVectorization/CMakeLists.txt: -------------------------------------------------------------------------------- 1 | FILE(GLOB Eigen_MoreVectorization_SRCS "*.h") 2 | 3 | INSTALL(FILES 4 | ${Eigen_MoreVectorization_SRCS} 5 | DESTINATION ${INCLUDE_INSTALL_DIR}/unsupported/Eigen/src/MoreVectorization COMPONENT Devel 6 | ) 7 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/unsupported/Eigen/src/NonLinearOptimization/CMakeLists.txt: -------------------------------------------------------------------------------- 1 | FILE(GLOB Eigen_NonLinearOptimization_SRCS "*.h") 2 | 3 | INSTALL(FILES 4 | ${Eigen_NonLinearOptimization_SRCS} 5 | DESTINATION ${INCLUDE_INSTALL_DIR}/unsupported/Eigen/src/NonLinearOptimization COMPONENT Devel 6 | ) 7 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/unsupported/Eigen/src/NumericalDiff/CMakeLists.txt: -------------------------------------------------------------------------------- 1 | FILE(GLOB Eigen_NumericalDiff_SRCS "*.h") 2 | 3 | INSTALL(FILES 4 | ${Eigen_NumericalDiff_SRCS} 5 | DESTINATION ${INCLUDE_INSTALL_DIR}/unsupported/Eigen/src/NumericalDiff COMPONENT Devel 6 | ) 7 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/unsupported/Eigen/src/Polynomials/CMakeLists.txt: -------------------------------------------------------------------------------- 1 | FILE(GLOB Eigen_Polynomials_SRCS "*.h") 2 | 3 | INSTALL(FILES 4 | ${Eigen_Polynomials_SRCS} 5 | DESTINATION ${INCLUDE_INSTALL_DIR}/unsupported/Eigen/src/Polynomials COMPONENT Devel 6 | ) 7 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/unsupported/Eigen/src/Skyline/CMakeLists.txt: -------------------------------------------------------------------------------- 1 | FILE(GLOB Eigen_Skyline_SRCS "*.h") 2 | 3 | INSTALL(FILES 4 | ${Eigen_Skyline_SRCS} 5 | DESTINATION ${INCLUDE_INSTALL_DIR}/unsupported/Eigen/src/Skyline COMPONENT Devel 6 | ) 7 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/unsupported/Eigen/src/SparseExtra/CMakeLists.txt: -------------------------------------------------------------------------------- 1 | FILE(GLOB Eigen_SparseExtra_SRCS "*.h") 2 | 3 | INSTALL(FILES 4 | ${Eigen_SparseExtra_SRCS} 5 | DESTINATION ${INCLUDE_INSTALL_DIR}/unsupported/Eigen/src/SparseExtra COMPONENT Devel 6 | ) 7 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/unsupported/Eigen/src/Splines/CMakeLists.txt: -------------------------------------------------------------------------------- 1 | FILE(GLOB Eigen_Splines_SRCS "*.h") 2 | 3 | INSTALL(FILES 4 | ${Eigen_Splines_SRCS} 5 | DESTINATION ${INCLUDE_INSTALL_DIR}/unsupported/Eigen/src/Splines COMPONENT Devel 6 | ) 7 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/unsupported/doc/CMakeLists.txt: -------------------------------------------------------------------------------- 1 | set_directory_properties(PROPERTIES EXCLUDE_FROM_ALL TRUE) 2 | 3 | add_subdirectory(examples) 4 | add_subdirectory(snippets) 5 | -------------------------------------------------------------------------------- /External/Eigen-3.1.0-alpha2/unsupported/test/FFT.cpp: -------------------------------------------------------------------------------- 1 | #define test_FFTW test_FFT 2 | #include "FFTW.cpp" 3 | -------------------------------------------------------------------------------- /External/EigenOld/.hg_archival.txt: -------------------------------------------------------------------------------- 1 | repo: 8a21fd850624c931e448cbcfb38168cb2717c790 2 | node: 0938af7840b013ea31f4bf31950fb87dc180144d 3 | branch: 2.0 4 | tag: 2.0.15 5 | -------------------------------------------------------------------------------- /External/EigenOld/.hgignore: -------------------------------------------------------------------------------- 1 | syntax: glob 2 | qrc_*cxx 3 | *.orig 4 | *.pyc 5 | *.diff 6 | diff 7 | *.save 8 | save 9 | *.old 10 | *.gmo 11 | *.qm 12 | core 13 | core.* 14 | *.bak 15 | *~ 16 | build* 17 | *.moc.* 18 | *.moc 19 | ui_* 20 | CMakeCache.txt 21 | tags 22 | .*.swp 23 | activity.png 24 | *.out 25 | *.php* 26 | -------------------------------------------------------------------------------- /External/EigenOld/.krazy: -------------------------------------------------------------------------------- 1 | SKIP /disabled/ 2 | SKIP /bench/ 3 | SKIP /build/ 4 | -------------------------------------------------------------------------------- /External/EigenOld/Array: -------------------------------------------------------------------------------- 1 | #ifndef EIGEN_ARRAY_MODULE_H 2 | #define EIGEN_ARRAY_MODULE_H 3 | 4 | #ifdef _MSC_VER 5 | #pragma message("The inclusion of Eigen/Array is deprecated. \ 6 | The array module is available as soon as Eigen/Core is included.") 7 | #elif __GNUC__ 8 | #warning "The inclusion of Eigen/Array is deprecated. \ 9 | The array module is available as soon as Eigen/Core is included." 10 | #endif 11 | 12 | #include "Core" 13 | 14 | #endif // EIGEN_ARRAY_MODULE_H 15 | -------------------------------------------------------------------------------- /External/EigenOld/CMakeLists.txt: -------------------------------------------------------------------------------- 1 | file(GLOB Eigen_directory_files "*") 2 | foreach(f ${Eigen_directory_files}) 3 | if(NOT f MATCHES ".txt" AND NOT f MATCHES "${CMAKE_CURRENT_SOURCE_DIR}/src") 4 | list(APPEND Eigen_directory_files_to_install ${f}) 5 | endif() 6 | endforeach(f ${Eigen_directory_files}) 7 | 8 | install(FILES 9 | ${Eigen_directory_files_to_install} 10 | DESTINATION ${INCLUDE_INSTALL_DIR}/Eigen COMPONENT Devel 11 | ) 12 | 13 | add_subdirectory(src) 14 | -------------------------------------------------------------------------------- /External/EigenOld/Dense: -------------------------------------------------------------------------------- 1 | #include "Core" 2 | #include "LU" 3 | #include "Cholesky" 4 | #include "QR" 5 | #include "SVD" 6 | #include "Geometry" 7 | #include "Eigenvalues" 8 | -------------------------------------------------------------------------------- /External/EigenOld/Eigen: -------------------------------------------------------------------------------- 1 | #include "Dense" 2 | #include "Sparse" 3 | -------------------------------------------------------------------------------- /External/EigenOld/bench/bench_sum.cpp: -------------------------------------------------------------------------------- 1 | #include 2 | USING_PART_OF_NAMESPACE_EIGEN 3 | using namespace std; 4 | 5 | int main() 6 | { 7 | typedef Matrix Vec; 8 | Vec v(SIZE); 9 | v.setZero(); 10 | v[0] = 1; 11 | v[1] = 2; 12 | for(int i = 0; i < 1000000; i++) 13 | { 14 | v.coeffRef(0) += v.sum() * SCALAR(1e-20); 15 | } 16 | cout << v.sum() << endl; 17 | } 18 | -------------------------------------------------------------------------------- /External/EigenOld/bench/btl/actions/basic_actions.hh: -------------------------------------------------------------------------------- 1 | 2 | #include "action_axpy.hh" 3 | #include "action_axpby.hh" 4 | 5 | #include "action_matrix_vector_product.hh" 6 | #include "action_atv_product.hh" 7 | 8 | #include "action_matrix_matrix_product.hh" 9 | #include "action_ata_product.hh" 10 | #include "action_aat_product.hh" 11 | 12 | #include "action_trisolve.hh" 13 | 14 | // #include "action_lu_solve.hh" 15 | 16 | -------------------------------------------------------------------------------- /External/EigenOld/bench/btl/cmake/FindGMM.cmake: -------------------------------------------------------------------------------- 1 | if (GMM_INCLUDE_DIR) 2 | # in cache already 3 | set(GMM_FOUND TRUE) 4 | else (GMM_INCLUDE_DIR) 5 | 6 | find_path(GMM_INCLUDE_DIR NAMES gmm/gmm.h 7 | PATHS 8 | ${INCLUDE_INSTALL_DIR} 9 | ${GMM_INCLUDE_PATH} 10 | ) 11 | 12 | include(FindPackageHandleStandardArgs) 13 | FIND_PACKAGE_HANDLE_STANDARD_ARGS(GMM DEFAULT_MSG GMM_INCLUDE_DIR ) 14 | 15 | mark_as_advanced(GMM_INCLUDE_DIR) 16 | 17 | endif(GMM_INCLUDE_DIR) 18 | -------------------------------------------------------------------------------- /External/EigenOld/bench/btl/generic_bench/static/intel_bench_fixed_size.hh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PMBio/peer/40bc4b2cd92459ce42f44dfe279717436395f3f6/External/EigenOld/bench/btl/generic_bench/static/intel_bench_fixed_size.hh -------------------------------------------------------------------------------- /External/EigenOld/bench/btl/generic_bench/static/static_size_generator.hh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PMBio/peer/40bc4b2cd92459ce42f44dfe279717436395f3f6/External/EigenOld/bench/btl/generic_bench/static/static_size_generator.hh -------------------------------------------------------------------------------- /External/EigenOld/bench/btl/generic_bench/timers/STL_perf_analyzer.hh: 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https://raw.githubusercontent.com/PMBio/peer/40bc4b2cd92459ce42f44dfe279717436395f3f6/External/EigenOld/bench/btl/generic_bench/timers/mixed_perf_analyzer.hh -------------------------------------------------------------------------------- /External/EigenOld/bench/btl/generic_bench/utils/size_lin_log.hh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PMBio/peer/40bc4b2cd92459ce42f44dfe279717436395f3f6/External/EigenOld/bench/btl/generic_bench/utils/size_lin_log.hh -------------------------------------------------------------------------------- /External/EigenOld/bench/btl/libs/C/CMakeLists.txt: -------------------------------------------------------------------------------- 1 | include_directories(${PROJECT_SOURCE_DIR}/libs/f77) 2 | btl_add_bench(btl_C main.cpp OFF) 3 | # set_target_properties(btl_C PROPERTIES COMPILE_FLAGS "-fpeel-loops") -------------------------------------------------------------------------------- /External/EigenOld/bench/btl/libs/STL/CMakeLists.txt: -------------------------------------------------------------------------------- 1 | 2 | btl_add_bench(btl_STL main.cpp OFF) 3 | -------------------------------------------------------------------------------- /External/EigenOld/bench/btl/libs/STL_algo/CMakeLists.txt: -------------------------------------------------------------------------------- 1 | 2 | btl_add_bench(btl_STL_algo main.cpp OFF) 3 | -------------------------------------------------------------------------------- /External/EigenOld/bench/btl/libs/f77/CMakeLists.txt: -------------------------------------------------------------------------------- 1 | if(CMAKE_MINOR_VERSION GREATER 4) 2 | if(NOT MSVC) 3 | enable_language(Fortran) 4 | endif(NOT MSVC) 5 | btl_add_bench(btl_f77 main.cpp dmxv.f smxv.f dmxm.f smxm.f daxpy.f saxpy.f data.f sata.f daat.f saat.f OFF) 6 | endif(CMAKE_MINOR_VERSION GREATER 4) -------------------------------------------------------------------------------- /External/EigenOld/bench/btl/libs/f77/daat.f: -------------------------------------------------------------------------------- 1 | SUBROUTINE DAAT(A,X,N) 2 | ** 3 | ** X = AT * A 4 | REAL*8 A(N,N),X(N,N),R 5 | DO 20 I=1,N 6 | DO 20 J=1,N 7 | R=0. 8 | DO 10 K=1,N 9 | R=R+A(I,K)*A(J,K) 10 | 10 CONTINUE 11 | X(I,J)=R 12 | 20 CONTINUE 13 | RETURN 14 | END 15 | -------------------------------------------------------------------------------- /External/EigenOld/bench/btl/libs/f77/data.f: -------------------------------------------------------------------------------- 1 | SUBROUTINE DATA(A,X,N) 2 | ** 3 | ** X = AT * A 4 | REAL*8 A(N,N),X(N,N),R 5 | DO 20 I=1,N 6 | DO 20 J=1,N 7 | R=0. 8 | DO 10 K=1,N 9 | R=R+A(K,I)*A(K,J) 10 | 10 CONTINUE 11 | X(I,J)=R 12 | 20 CONTINUE 13 | RETURN 14 | END 15 | -------------------------------------------------------------------------------- /External/EigenOld/bench/btl/libs/f77/saat.f: -------------------------------------------------------------------------------- 1 | SUBROUTINE SAAT(A,X,N) 2 | ** 3 | ** X = AT * A 4 | REAL*4 A(N,N),X(N,N) 5 | DO 20 I=1,N 6 | DO 20 J=1,N 7 | R=0. 8 | DO 10 K=1,N 9 | R=R+A(I,K)*A(J,K) 10 | 10 CONTINUE 11 | X(I,J)=R 12 | 20 CONTINUE 13 | RETURN 14 | END 15 | -------------------------------------------------------------------------------- /External/EigenOld/bench/btl/libs/f77/sata.f: -------------------------------------------------------------------------------- 1 | SUBROUTINE SATA(A,X,N) 2 | ** 3 | ** X = AT * A 4 | REAL*4 A(N,N),X(N,N) 5 | DO 20 I=1,N 6 | DO 20 J=1,N 7 | R=0. 8 | DO 10 K=1,N 9 | R=R+A(K,I)*A(K,J) 10 | 10 CONTINUE 11 | X(I,J)=R 12 | 20 CONTINUE 13 | RETURN 14 | END 15 | -------------------------------------------------------------------------------- /External/EigenOld/bench/btl/libs/gmm/CMakeLists.txt: -------------------------------------------------------------------------------- 1 | 2 | find_package(GMM) 3 | if (GMM_FOUND) 4 | include_directories(${GMM_INCLUDES}) 5 | btl_add_bench(btl_gmm main.cpp) 6 | endif (GMM_FOUND) 7 | -------------------------------------------------------------------------------- /External/EigenOld/bench/btl/libs/hand_vec/CMakeLists.txt: -------------------------------------------------------------------------------- 1 | find_package(Eigen2) 2 | if (EIGEN2_FOUND) 3 | 4 | include_directories(${EIGEN2_INCLUDE_DIR} ${PROJECT_SOURCE_DIR}/libs/f77) 5 | btl_add_bench(btl_hand_vec main.cpp OFF) 6 | 7 | btl_add_bench(btl_hand_peeling main.cpp OFF) 8 | if (BUILD_btl_hand_peeling) 9 | set_target_properties(btl_hand_peeling PROPERTIES COMPILE_FLAGS "-DPEELING") 10 | endif (BUILD_btl_hand_peeling) 11 | 12 | endif (EIGEN2_FOUND) -------------------------------------------------------------------------------- /External/EigenOld/bench/btl/libs/mtl4/.kdbgrc.main: -------------------------------------------------------------------------------- 1 | [General] 2 | DebuggerCmdStr= 3 | DriverName=GDB 4 | FileVersion=1 5 | OptionsSelected= 6 | ProgramArgs= 7 | TTYLevel=7 8 | WorkingDirectory= 9 | 10 | [Memory] 11 | ColumnWidths=80,0 12 | NumExprs=0 13 | -------------------------------------------------------------------------------- /External/EigenOld/bench/btl/libs/mtl4/CMakeLists.txt: -------------------------------------------------------------------------------- 1 | 2 | find_package(MTL4) 3 | if (MTL4_FOUND) 4 | include_directories(${MTL4_INCLUDE_DIR}) 5 | btl_add_bench(btl_mtl4 main.cpp) 6 | endif (MTL4_FOUND) 7 | -------------------------------------------------------------------------------- /External/EigenOld/bench/btl/libs/tvmet/CMakeLists.txt: -------------------------------------------------------------------------------- 1 | 2 | find_package(Tvmet) 3 | if (TVMET_FOUND) 4 | include_directories(${TVMET_INCLUDE_DIR}) 5 | btl_add_bench(btl_tvmet main.cpp OFF) 6 | endif (TVMET_FOUND) 7 | -------------------------------------------------------------------------------- /External/EigenOld/bench/btl/libs/ublas/CMakeLists.txt: -------------------------------------------------------------------------------- 1 | 2 | find_package(Boost) 3 | if (Boost_FOUND) 4 | include_directories(${Boost_INCLUDE_DIRS}) 5 | include_directories(${Boost_INCLUDES}) 6 | btl_add_bench(btl_ublas main.cpp) 7 | endif (Boost_FOUND) 8 | -------------------------------------------------------------------------------- /External/EigenOld/demos/CMakeLists.txt: -------------------------------------------------------------------------------- 1 | 2 | add_subdirectory(mandelbrot) 3 | add_subdirectory(opengl) 4 | -------------------------------------------------------------------------------- /External/EigenOld/demos/mandelbrot/README: -------------------------------------------------------------------------------- 1 | *** Mandelbrot demo *** 2 | 3 | Controls: 4 | * Left mouse button to center view at a point. 5 | * Drag vertically with left mouse button to zoom in and out. 6 | 7 | Be sure to enable SSE2 or AltiVec to improve performance. 8 | 9 | The number of iterations, and the choice between single and double precision, are 10 | determined at runtime depending on the zoom level. 11 | -------------------------------------------------------------------------------- /External/EigenOld/disabled/ompbench.cxxlist: -------------------------------------------------------------------------------- 1 | #!/bin/bash 2 | 3 | CLIST[((g++))]="g++-4.2 -O3 -DNDEBUG -finline-limit=10000 -fopenmp" 4 | 5 | # CLIST[((g++))]="g++-4.3 -O3 -DNDEBUG -finline-limit=10000 -fopenmp" 6 | 7 | CLIST[((g++))]="icpc -fast -DNDEBUG -fno-exceptions -no-inline-max-size -openmp" -------------------------------------------------------------------------------- /External/EigenOld/doc/Eigen_Silly_Professor_64x64.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PMBio/peer/40bc4b2cd92459ce42f44dfe279717436395f3f6/External/EigenOld/doc/Eigen_Silly_Professor_64x64.png -------------------------------------------------------------------------------- /External/EigenOld/doc/buildexamplelist.sh: -------------------------------------------------------------------------------- 1 | #!/bin/sh 2 | 3 | echo "namespace Eigen {" 4 | echo "/** \page ExampleList" 5 | echo "

Selected list of examples

" 6 | 7 | grep \\addexample $1/Eigen/src/*/*.h -R | cut -d \\ -f 2- | \ 8 | while read example; 9 | do 10 | anchor=`echo "$example" | cut -d " " -f 2` 11 | text=`echo "$example" | cut -d " " -f 4-` 12 | echo "\\\li \\\ref $anchor \"$text\"" 13 | done 14 | echo "*/" 15 | echo "}" -------------------------------------------------------------------------------- /External/EigenOld/doc/cleanhierarchy.sh: -------------------------------------------------------------------------------- 1 | #!/bin/sh 2 | 3 | sed -i 's/^.li.*MatrixBase\<.*gt.*a.$/ /g' $1 4 | sed -i 's/^.li.*MapBase\<.*gt.*a.$/ /g' $1 5 | sed -i 's/^.li.*RotationBase\<.*gt.*a.$/ /g' $1 6 | -------------------------------------------------------------------------------- /External/EigenOld/doc/eigendoxy_footer.html.in: -------------------------------------------------------------------------------- 1 |
Generated on Sun Aug 24 23:40:21 2008 for Eigen by  2 | 3 | doxygen 1.5.5
4 | 5 | -------------------------------------------------------------------------------- /External/EigenOld/doc/examples/.krazy: -------------------------------------------------------------------------------- 1 | EXCLUDE copyright 2 | EXCLUDE license 3 | -------------------------------------------------------------------------------- /External/EigenOld/doc/examples/Tutorial_simple_example_fixed_size.cpp: -------------------------------------------------------------------------------- 1 | #include 2 | 3 | // import most common Eigen types 4 | USING_PART_OF_NAMESPACE_EIGEN 5 | 6 | int main(int, char *[]) 7 | { 8 | Matrix3f m3; 9 | m3 << 1, 2, 3, 4, 5, 6, 7, 8, 9; 10 | Matrix4f m4 = Matrix4f::Identity(); 11 | Vector4i v4(1, 2, 3, 4); 12 | 13 | std::cout << "m3\n" << m3 << "\nm4:\n" 14 | << m4 << "\nv4:\n" << v4 << std::endl; 15 | } 16 | -------------------------------------------------------------------------------- /External/EigenOld/doc/snippets/.krazy: -------------------------------------------------------------------------------- 1 | EXCLUDE copyright 2 | EXCLUDE license 3 | -------------------------------------------------------------------------------- /External/EigenOld/doc/snippets/AngleAxis_mimic_euler.cpp: -------------------------------------------------------------------------------- 1 | Matrix3f m; 2 | m = AngleAxisf(0.25*M_PI, Vector3f::UnitX()) 3 | * AngleAxisf(0.5*M_PI, Vector3f::UnitY()) 4 | * AngleAxisf(0.33*M_PI, Vector3f::UnitZ()); 5 | cout << m << endl << "is unitary: " << m.isUnitary() << endl; 6 | -------------------------------------------------------------------------------- /External/EigenOld/doc/snippets/Cwise_abs.cpp: -------------------------------------------------------------------------------- 1 | Vector3d v(1,-2,-3); 2 | cout << v.cwise().abs() << endl; 3 | -------------------------------------------------------------------------------- /External/EigenOld/doc/snippets/Cwise_abs2.cpp: -------------------------------------------------------------------------------- 1 | Vector3d v(1,-2,-3); 2 | cout << v.cwise().abs2() << endl; 3 | -------------------------------------------------------------------------------- /External/EigenOld/doc/snippets/Cwise_cos.cpp: -------------------------------------------------------------------------------- 1 | Vector3d v(M_PI, M_PI/2, M_PI/3); 2 | cout << v.cwise().cos() << endl; 3 | -------------------------------------------------------------------------------- /External/EigenOld/doc/snippets/Cwise_cube.cpp: -------------------------------------------------------------------------------- 1 | Vector3d v(2,3,4); 2 | cout << v.cwise().cube() << endl; 3 | -------------------------------------------------------------------------------- /External/EigenOld/doc/snippets/Cwise_equal_equal.cpp: -------------------------------------------------------------------------------- 1 | Vector3d v(1,2,3), w(3,2,1); 2 | cout << (v.cwise()==w) << endl; 3 | -------------------------------------------------------------------------------- /External/EigenOld/doc/snippets/Cwise_exp.cpp: -------------------------------------------------------------------------------- 1 | Vector3d v(1,2,3); 2 | cout << v.cwise().exp() << endl; 3 | -------------------------------------------------------------------------------- /External/EigenOld/doc/snippets/Cwise_greater.cpp: -------------------------------------------------------------------------------- 1 | Vector3d v(1,2,3), w(3,2,1); 2 | cout << (v.cwise()>w) << endl; 3 | -------------------------------------------------------------------------------- /External/EigenOld/doc/snippets/Cwise_greater_equal.cpp: -------------------------------------------------------------------------------- 1 | Vector3d v(1,2,3), w(3,2,1); 2 | cout << (v.cwise()>=w) << endl; 3 | -------------------------------------------------------------------------------- /External/EigenOld/doc/snippets/Cwise_inverse.cpp: -------------------------------------------------------------------------------- 1 | Vector3d v(2,3,4); 2 | cout << v.cwise().inverse() << endl; 3 | -------------------------------------------------------------------------------- /External/EigenOld/doc/snippets/Cwise_less.cpp: -------------------------------------------------------------------------------- 1 | Vector3d v(1,2,3), w(3,2,1); 2 | cout << (v.cwise()(1,1):" << endl << m.block<2,2>(1,1) << endl; 4 | m.block<2,2>(1,1).setZero(); 5 | cout << "Now the matrix m is:" << endl << m << endl; 6 | -------------------------------------------------------------------------------- /External/EigenOld/doc/snippets/MatrixBase_block_int_int_int_int.cpp: -------------------------------------------------------------------------------- 1 | Matrix4i m = Matrix4i::Random(); 2 | cout << "Here is the matrix m:" << endl << m << endl; 3 | cout << "Here is m.block(1, 1, 2, 2):" << endl << m.block(1, 1, 2, 2) << endl; 4 | m.block(1, 1, 2, 2).setZero(); 5 | cout << "Now the matrix m is:" << endl << m << endl; 6 | -------------------------------------------------------------------------------- /External/EigenOld/doc/snippets/MatrixBase_cast.cpp: -------------------------------------------------------------------------------- 1 | Matrix2d md = Matrix2d::Identity() * 0.45; 2 | Matrix2f mf = Matrix2f::Identity(); 3 | cout << md + mf.cast() << endl; 4 | -------------------------------------------------------------------------------- /External/EigenOld/doc/snippets/MatrixBase_col.cpp: -------------------------------------------------------------------------------- 1 | Matrix3d m = Matrix3d::Identity(); 2 | m.col(1) = Vector3d(4,5,6); 3 | cout << m << endl; 4 | -------------------------------------------------------------------------------- /External/EigenOld/doc/snippets/MatrixBase_colwise.cpp: -------------------------------------------------------------------------------- 1 | Matrix3d m = Matrix3d::Random(); 2 | cout << "Here is the matrix m:" << endl << m << endl; 3 | cout << "Here is the sum of each column:" << endl << m.colwise().sum() << endl; 4 | cout << "Here is the maximum absolute value of each column:" 5 | << endl << m.cwise().abs().colwise().maxCoeff() << endl; 6 | -------------------------------------------------------------------------------- /External/EigenOld/doc/snippets/MatrixBase_computeInverse.cpp: -------------------------------------------------------------------------------- 1 | Matrix3d m = Matrix3d::Random(); 2 | cout << "Here is the matrix m:" << endl << m << endl; 3 | Matrix3d inv; 4 | m.computeInverse(&inv); 5 | cout << "Its inverse is:" << endl << inv << endl; 6 | -------------------------------------------------------------------------------- /External/EigenOld/doc/snippets/MatrixBase_corner_enum_int_int.cpp: -------------------------------------------------------------------------------- 1 | Matrix4i m = Matrix4i::Random(); 2 | cout << "Here is the matrix m:" << endl << m << endl; 3 | cout << "Here is the bottom-right 2x3 corner in m:" << endl 4 | << m.corner(Eigen::BottomRight, 2, 3) << endl; 5 | m.corner(Eigen::BottomRight, 2, 3).setZero(); 6 | cout << "Now the matrix m is:" << endl << m << endl; 7 | -------------------------------------------------------------------------------- /External/EigenOld/doc/snippets/MatrixBase_cwise.cpp: -------------------------------------------------------------------------------- 1 | Vector3d v(1,2,3); 2 | v.cwise() += 3; 3 | v.cwise() -= 2; 4 | cout << v << endl; 5 | -------------------------------------------------------------------------------- /External/EigenOld/doc/snippets/MatrixBase_cwise_const.cpp: -------------------------------------------------------------------------------- 1 | Vector3d v(-1,2,-3); 2 | cout << "the absolute values:" << endl << v.cwise().abs() << endl; 3 | cout << "the absolute values plus one:" << endl << v.cwise().abs().cwise()+1 << endl; 4 | cout << "sum of the squares: " << v.cwise().square().sum() << endl; 5 | -------------------------------------------------------------------------------- /External/EigenOld/doc/snippets/MatrixBase_diagonal.cpp: -------------------------------------------------------------------------------- 1 | Matrix3i m = Matrix3i::Random(); 2 | cout << "Here is the matrix m:" << endl << m << endl; 3 | cout << "Here are the coefficients on the main diagonal of m:" << endl 4 | << m.diagonal() << endl; 5 | -------------------------------------------------------------------------------- /External/EigenOld/doc/snippets/MatrixBase_end_int.cpp: -------------------------------------------------------------------------------- 1 | RowVector4i v = RowVector4i::Random(); 2 | cout << "Here is the vector v:" << endl << v << endl; 3 | cout << "Here is v.end(2):" << endl << v.end(2) << endl; 4 | v.end(2).setZero(); 5 | cout << "Now the vector v is:" << endl << v << endl; 6 | -------------------------------------------------------------------------------- /External/EigenOld/doc/snippets/MatrixBase_fixedBlock_int_int.cpp: -------------------------------------------------------------------------------- 1 | Matrix4d m = Vector4d(1,2,3,4).asDiagonal(); 2 | cout << "Here is the matrix m:" << endl << m << endl; 3 | cout << "Here is m.fixed<2, 2>(2, 2):" << endl << m.block<2, 2>(2, 2) << endl; 4 | m.block<2, 2>(2, 0) = m.block<2, 2>(2, 2); 5 | cout << "Now the matrix m is:" << endl << m << endl; 6 | -------------------------------------------------------------------------------- /External/EigenOld/doc/snippets/MatrixBase_identity.cpp: -------------------------------------------------------------------------------- 1 | cout << Matrix::Identity() << endl; 2 | -------------------------------------------------------------------------------- /External/EigenOld/doc/snippets/MatrixBase_identity_int_int.cpp: -------------------------------------------------------------------------------- 1 | cout << MatrixXd::Identity(4, 3) << endl; 2 | -------------------------------------------------------------------------------- /External/EigenOld/doc/snippets/MatrixBase_inverse.cpp: -------------------------------------------------------------------------------- 1 | Matrix3d m = Matrix3d::Random(); 2 | cout << "Here is the matrix m:" << endl << m << endl; 3 | cout << "Its inverse is:" << endl << m.inverse() << endl; 4 | -------------------------------------------------------------------------------- /External/EigenOld/doc/snippets/MatrixBase_isDiagonal.cpp: -------------------------------------------------------------------------------- 1 | Matrix3d m = 10000 * Matrix3d::Identity(); 2 | m(0,2) = 1; 3 | cout << "Here's the matrix m:" << endl << m << endl; 4 | cout << "m.isDiagonal() returns: " << m.isDiagonal() << endl; 5 | cout << "m.isDiagonal(1e-3) returns: " << m.isDiagonal(1e-3) << endl; 6 | 7 | -------------------------------------------------------------------------------- /External/EigenOld/doc/snippets/MatrixBase_isIdentity.cpp: -------------------------------------------------------------------------------- 1 | Matrix3d m = Matrix3d::Identity(); 2 | m(0,2) = 1e-4; 3 | cout << "Here's the matrix m:" << endl << m << endl; 4 | cout << "m.isIdentity() returns: " << m.isIdentity() << endl; 5 | cout << "m.isIdentity(1e-3) returns: " << m.isIdentity(1e-3) << endl; 6 | -------------------------------------------------------------------------------- /External/EigenOld/doc/snippets/MatrixBase_isOnes.cpp: -------------------------------------------------------------------------------- 1 | Matrix3d m = Matrix3d::Ones(); 2 | m(0,2) += 1e-4; 3 | cout << "Here's the matrix m:" << endl << m << endl; 4 | cout << "m.isOnes() returns: " << m.isOnes() << endl; 5 | cout << "m.isOnes(1e-3) returns: " << m.isOnes(1e-3) << endl; 6 | -------------------------------------------------------------------------------- /External/EigenOld/doc/snippets/MatrixBase_isOrthogonal.cpp: -------------------------------------------------------------------------------- 1 | Vector3d v(1,0,0); 2 | Vector3d w(1e-4,0,1); 3 | cout << "Here's the vector v:" << endl << v << endl; 4 | cout << "Here's the vector w:" << endl << w << endl; 5 | cout << "v.isOrthogonal(w) returns: " << v.isOrthogonal(w) << endl; 6 | cout << "v.isOrthogonal(w,1e-3) returns: " << v.isOrthogonal(w,1e-3) << endl; 7 | -------------------------------------------------------------------------------- /External/EigenOld/doc/snippets/MatrixBase_isUnitary.cpp: -------------------------------------------------------------------------------- 1 | Matrix3d m = Matrix3d::Identity(); 2 | m(0,2) = 1e-4; 3 | cout << "Here's the matrix m:" << endl << m << endl; 4 | cout << "m.isUnitary() returns: " << m.isUnitary() << endl; 5 | cout << "m.isUnitary(1e-3) returns: " << m.isUnitary(1e-3) << endl; 6 | -------------------------------------------------------------------------------- /External/EigenOld/doc/snippets/MatrixBase_isZero.cpp: -------------------------------------------------------------------------------- 1 | Matrix3d m = Matrix3d::Zero(); 2 | m(0,2) = 1e-4; 3 | cout << "Here's the matrix m:" << endl << m << endl; 4 | cout << "m.isZero() returns: " << m.isZero() << endl; 5 | cout << "m.isZero(1e-3) returns: " << m.isZero(1e-3) << endl; 6 | -------------------------------------------------------------------------------- /External/EigenOld/doc/snippets/MatrixBase_lazy.cpp: -------------------------------------------------------------------------------- 1 | Matrix2d m; m << 1,2,3,4; 2 | cout << (m*m).lazy().row(0) << endl; 3 | // this computes only one row of the product. By contrast, 4 | // if we did "(m*m).row(0);" then m*m would first be evaluated into 5 | // a temporary, because the Product expression has the EvalBeforeNestingBit. 6 | -------------------------------------------------------------------------------- /External/EigenOld/doc/snippets/MatrixBase_minor.cpp: -------------------------------------------------------------------------------- 1 | Matrix3i m = Matrix3i::Random(); 2 | cout << "Here is the matrix m:" << endl << m << endl; 3 | cout << "Here is m.minor(1,1):" << endl << m.minor(1,1) << endl; 4 | -------------------------------------------------------------------------------- /External/EigenOld/doc/snippets/MatrixBase_ones.cpp: -------------------------------------------------------------------------------- 1 | cout << Matrix2d::Ones() << endl; 2 | cout << 6 * RowVector4i::Ones() << endl; 3 | -------------------------------------------------------------------------------- /External/EigenOld/doc/snippets/MatrixBase_ones_int.cpp: -------------------------------------------------------------------------------- 1 | cout << 6 * RowVectorXi::Ones(4) << endl; 2 | cout << VectorXf::Ones(2) << endl; 3 | -------------------------------------------------------------------------------- /External/EigenOld/doc/snippets/MatrixBase_ones_int_int.cpp: -------------------------------------------------------------------------------- 1 | cout << MatrixXi::Ones(2,3) << endl; 2 | -------------------------------------------------------------------------------- /External/EigenOld/doc/snippets/MatrixBase_part.cpp: -------------------------------------------------------------------------------- 1 | Matrix3d m = Matrix3d::Zero(); 2 | m.part().setOnes(); 3 | cout << "Here is the matrix m:" << endl << m << endl; 4 | cout << "And let us now compute m*m.adjoint() in a very optimized way" << endl 5 | << "taking advantage of the symmetry." << endl; 6 | Matrix3d n; 7 | n.part() = (m*m.adjoint()).lazy(); 8 | cout << "The result is:" << endl << n << endl; 9 | -------------------------------------------------------------------------------- /External/EigenOld/doc/snippets/MatrixBase_random.cpp: -------------------------------------------------------------------------------- 1 | cout << 100 * Matrix2i::Random() << endl; 2 | -------------------------------------------------------------------------------- /External/EigenOld/doc/snippets/MatrixBase_random_int.cpp: -------------------------------------------------------------------------------- 1 | cout << VectorXi::Random(2) << endl; 2 | -------------------------------------------------------------------------------- /External/EigenOld/doc/snippets/MatrixBase_random_int_int.cpp: -------------------------------------------------------------------------------- 1 | cout << MatrixXi::Random(2,3) << endl; 2 | -------------------------------------------------------------------------------- /External/EigenOld/doc/snippets/MatrixBase_row.cpp: -------------------------------------------------------------------------------- 1 | Matrix3d m = Matrix3d::Identity(); 2 | m.row(1) = Vector3d(4,5,6); 3 | cout << m << endl; 4 | -------------------------------------------------------------------------------- /External/EigenOld/doc/snippets/MatrixBase_rowwise.cpp: -------------------------------------------------------------------------------- 1 | Matrix3d m = Matrix3d::Random(); 2 | cout << "Here is the matrix m:" << endl << m << endl; 3 | cout << "Here is the sum of each row:" << endl << m.rowwise().sum() << endl; 4 | cout << "Here is the maximum absolute value of each row:" 5 | << endl << m.cwise().abs().rowwise().maxCoeff() << endl; 6 | -------------------------------------------------------------------------------- /External/EigenOld/doc/snippets/MatrixBase_segment_int_int.cpp: -------------------------------------------------------------------------------- 1 | RowVector4i v = RowVector4i::Random(); 2 | cout << "Here is the vector v:" << endl << v << endl; 3 | cout << "Here is v.segment(1, 2):" << endl << v.segment(1, 2) << endl; 4 | v.segment(1, 2).setZero(); 5 | cout << "Now the vector v is:" << endl << v << endl; 6 | -------------------------------------------------------------------------------- /External/EigenOld/doc/snippets/MatrixBase_set.cpp: -------------------------------------------------------------------------------- 1 | Matrix3i m1; 2 | m1 << 1, 2, 3, 3 | 4, 5, 6, 4 | 7, 8, 9; 5 | cout << m1 << endl << endl; 6 | Matrix3i m2 = Matrix3i::Identity(); 7 | m2.block(0,0, 2,2) << 10, 11, 12, 13; 8 | cout << m2 << endl << endl; 9 | Vector2i v1; 10 | v1 << 14, 15; 11 | m2 << v1.transpose(), 16, 12 | v1, m1.block(1,1,2,2); 13 | cout << m2 << endl; 14 | -------------------------------------------------------------------------------- /External/EigenOld/doc/snippets/MatrixBase_setIdentity.cpp: -------------------------------------------------------------------------------- 1 | Matrix4i m = Matrix4i::Zero(); 2 | m.block<3,3>(1,0).setIdentity(); 3 | cout << m << endl; 4 | -------------------------------------------------------------------------------- /External/EigenOld/doc/snippets/MatrixBase_setOnes.cpp: -------------------------------------------------------------------------------- 1 | Matrix4i m = Matrix4i::Random(); 2 | m.row(1).setOnes(); 3 | cout << m << endl; 4 | -------------------------------------------------------------------------------- /External/EigenOld/doc/snippets/MatrixBase_setRandom.cpp: -------------------------------------------------------------------------------- 1 | Matrix4i m = Matrix4i::Zero(); 2 | m.col(1).setRandom(); 3 | cout << m << endl; 4 | -------------------------------------------------------------------------------- /External/EigenOld/doc/snippets/MatrixBase_setZero.cpp: -------------------------------------------------------------------------------- 1 | Matrix4i m = Matrix4i::Random(); 2 | m.row(1).setZero(); 3 | cout << m << endl; 4 | -------------------------------------------------------------------------------- /External/EigenOld/doc/snippets/MatrixBase_start_int.cpp: -------------------------------------------------------------------------------- 1 | RowVector4i v = RowVector4i::Random(); 2 | cout << "Here is the vector v:" << endl << v << endl; 3 | cout << "Here is v.start(2):" << endl << v.start(2) << endl; 4 | v.start(2).setZero(); 5 | cout << "Now the vector v is:" << endl << v << endl; 6 | -------------------------------------------------------------------------------- /External/EigenOld/doc/snippets/MatrixBase_template_int_end.cpp: -------------------------------------------------------------------------------- 1 | RowVector4i v = RowVector4i::Random(); 2 | cout << "Here is the vector v:" << endl << v << endl; 3 | cout << "Here is v.end(2):" << endl << v.end<2>() << endl; 4 | v.end<2>().setZero(); 5 | cout << "Now the vector v is:" << endl << v << endl; 6 | -------------------------------------------------------------------------------- /External/EigenOld/doc/snippets/MatrixBase_template_int_int_corner_enum.cpp: -------------------------------------------------------------------------------- 1 | Matrix4i m = Matrix4i::Random(); 2 | cout << "Here is the matrix m:" << endl << m << endl; 3 | cout << "Here is the bottom-right 2x3 corner in m:" << endl 4 | << m.corner<2,3>(Eigen::BottomRight) << endl; 5 | m.corner<2,3>(Eigen::BottomRight).setZero(); 6 | cout << "Now the matrix m is:" << endl << m << endl; 7 | -------------------------------------------------------------------------------- /External/EigenOld/doc/snippets/MatrixBase_template_int_segment.cpp: -------------------------------------------------------------------------------- 1 | RowVector4i v = RowVector4i::Random(); 2 | cout << "Here is the vector v:" << endl << v << endl; 3 | cout << "Here is v.segment<2>(1):" << endl << v.segment<2>(1) << endl; 4 | v.segment<2>(2).setZero(); 5 | cout << "Now the vector v is:" << endl << v << endl; 6 | -------------------------------------------------------------------------------- /External/EigenOld/doc/snippets/MatrixBase_template_int_start.cpp: -------------------------------------------------------------------------------- 1 | RowVector4i v = RowVector4i::Random(); 2 | cout << "Here is the vector v:" << endl << v << endl; 3 | cout << "Here is v.start(2):" << endl << v.start<2>() << endl; 4 | v.start<2>().setZero(); 5 | cout << "Now the vector v is:" << endl << v << endl; 6 | -------------------------------------------------------------------------------- /External/EigenOld/doc/snippets/MatrixBase_transpose.cpp: -------------------------------------------------------------------------------- 1 | Matrix2i m = Matrix2i::Random(); 2 | cout << "Here is the matrix m:" << endl << m << endl; 3 | cout << "Here is the transpose of m:" << endl << m.transpose() << endl; 4 | cout << "Here is the coefficient (1,0) in the transpose of m:" << endl 5 | << m.transpose()(1,0) << endl; 6 | cout << "Let us overwrite this coefficient with the value 0." << endl; 7 | m.transpose()(1,0) = 0; 8 | cout << "Now the matrix m is:" << endl << m << endl; 9 | -------------------------------------------------------------------------------- /External/EigenOld/doc/snippets/MatrixBase_zero.cpp: -------------------------------------------------------------------------------- 1 | cout << Matrix2d::Zero() << endl; 2 | cout << RowVector4i::Zero() << endl; 3 | -------------------------------------------------------------------------------- /External/EigenOld/doc/snippets/MatrixBase_zero_int.cpp: -------------------------------------------------------------------------------- 1 | cout << RowVectorXi::Zero(4) << endl; 2 | cout << VectorXf::Zero(2) << endl; 3 | -------------------------------------------------------------------------------- /External/EigenOld/doc/snippets/MatrixBase_zero_int_int.cpp: -------------------------------------------------------------------------------- 1 | cout << MatrixXi::Zero(2,3) << endl; 2 | -------------------------------------------------------------------------------- /External/EigenOld/doc/snippets/PartialRedux_count.cpp: -------------------------------------------------------------------------------- 1 | Matrix3d m = Matrix3d::Random(); 2 | cout << "Here is the matrix m:" << endl << m << endl; 3 | cout << "Here is the count of elements larger or equal than 0.5 of each row:" << endl << (m.cwise() >= 0.5).rowwise().count() << endl; 4 | -------------------------------------------------------------------------------- /External/EigenOld/doc/snippets/PartialRedux_maxCoeff.cpp: -------------------------------------------------------------------------------- 1 | Matrix3d m = Matrix3d::Random(); 2 | cout << "Here is the matrix m:" << endl << m << endl; 3 | cout << "Here is the maximum of each column:" << endl << m.colwise().maxCoeff() << endl; 4 | -------------------------------------------------------------------------------- /External/EigenOld/doc/snippets/PartialRedux_minCoeff.cpp: -------------------------------------------------------------------------------- 1 | Matrix3d m = Matrix3d::Random(); 2 | cout << "Here is the matrix m:" << endl << m << endl; 3 | cout << "Here is the minimum of each column:" << endl << m.colwise().minCoeff() << endl; 4 | -------------------------------------------------------------------------------- /External/EigenOld/doc/snippets/PartialRedux_norm.cpp: -------------------------------------------------------------------------------- 1 | Matrix3d m = Matrix3d::Random(); 2 | cout << "Here is the matrix m:" << endl << m << endl; 3 | cout << "Here is the norm of each column:" << endl << m.colwise().norm() << endl; 4 | -------------------------------------------------------------------------------- /External/EigenOld/doc/snippets/PartialRedux_squaredNorm.cpp: -------------------------------------------------------------------------------- 1 | Matrix3d m = Matrix3d::Random(); 2 | cout << "Here is the matrix m:" << endl << m << endl; 3 | cout << "Here is the square norm of each row:" << endl << m.rowwise().squaredNorm() << endl; 4 | -------------------------------------------------------------------------------- /External/EigenOld/doc/snippets/PartialRedux_sum.cpp: -------------------------------------------------------------------------------- 1 | Matrix3d m = Matrix3d::Random(); 2 | cout << "Here is the matrix m:" << endl << m << endl; 3 | cout << "Here is the sum of each row:" << endl << m.rowwise().sum() << endl; 4 | -------------------------------------------------------------------------------- /External/EigenOld/doc/snippets/Tutorial_commainit_01.cpp: -------------------------------------------------------------------------------- 1 | Matrix3f m; 2 | m << 1, 2, 3, 3 | 4, 5, 6, 4 | 7, 8, 9; 5 | cout << m; 6 | -------------------------------------------------------------------------------- /External/EigenOld/doc/snippets/Tutorial_commainit_02.cpp: -------------------------------------------------------------------------------- 1 | int rows=5, cols=5; 2 | MatrixXf m(rows,cols); 3 | m << (Matrix3f() << 1, 2, 3, 4, 5, 6, 7, 8, 9).finished(), 4 | MatrixXf::Zero(3,cols-3), 5 | MatrixXf::Zero(rows-3,3), 6 | MatrixXf::Identity(rows-3,cols-3); 7 | cout << m; 8 | -------------------------------------------------------------------------------- /External/EigenOld/doc/snippets/compile_snippet.cpp.in: -------------------------------------------------------------------------------- 1 | #include 2 | #include 3 | #include 4 | #include 5 | #include 6 | 7 | using namespace Eigen; 8 | using namespace std; 9 | 10 | int main(int, char**) 11 | { 12 | ${snippet_source_code} 13 | return 0; 14 | } 15 | -------------------------------------------------------------------------------- /External/EigenOld/eigen2.pc.in: -------------------------------------------------------------------------------- 1 | 2 | Name: Eigen2 3 | Description: A C++ template library for linear algebra: vectors, matrices, and related algorithms 4 | Requires: 5 | Version: ${EIGEN_VERSION_NUMBER} 6 | Libs: 7 | Cflags: -I${INCLUDE_INSTALL_DIR} 8 | -------------------------------------------------------------------------------- /External/EigenOld/src/CMakeLists.txt: -------------------------------------------------------------------------------- 1 | file(GLOB Eigen_src_subdirectories "*") 2 | foreach(f ${Eigen_src_subdirectories}) 3 | if(NOT f MATCHES ".txt") 4 | add_subdirectory(${f}) 5 | endif() 6 | endforeach() 7 | -------------------------------------------------------------------------------- /External/EigenOld/src/Cholesky/CMakeLists.txt: -------------------------------------------------------------------------------- 1 | FILE(GLOB Eigen_Cholesky_SRCS "*.h") 2 | 3 | INSTALL(FILES 4 | ${Eigen_Cholesky_SRCS} 5 | DESTINATION ${INCLUDE_INSTALL_DIR}/Eigen/src/Cholesky COMPONENT Devel 6 | ) 7 | -------------------------------------------------------------------------------- /External/EigenOld/src/Core/CMakeLists.txt: -------------------------------------------------------------------------------- 1 | FILE(GLOB Eigen_Core_SRCS "*.h") 2 | 3 | INSTALL(FILES 4 | ${Eigen_Core_SRCS} 5 | DESTINATION ${INCLUDE_INSTALL_DIR}/Eigen/src/Core COMPONENT Devel 6 | ) 7 | 8 | ADD_SUBDIRECTORY(products) 9 | ADD_SUBDIRECTORY(util) 10 | ADD_SUBDIRECTORY(arch) 11 | -------------------------------------------------------------------------------- /External/EigenOld/src/Core/arch/AltiVec/CMakeLists.txt: -------------------------------------------------------------------------------- 1 | FILE(GLOB Eigen_Core_arch_AltiVec_SRCS "*.h") 2 | 3 | INSTALL(FILES 4 | ${Eigen_Core_arch_AltiVec_SRCS} 5 | DESTINATION ${INCLUDE_INSTALL_DIR}/Eigen/src/Core/arch/AltiVec COMPONENT Devel 6 | ) 7 | -------------------------------------------------------------------------------- /External/EigenOld/src/Core/arch/CMakeLists.txt: -------------------------------------------------------------------------------- 1 | ADD_SUBDIRECTORY(SSE) 2 | ADD_SUBDIRECTORY(AltiVec) 3 | ADD_SUBDIRECTORY(NEON) 4 | ADD_SUBDIRECTORY(Default) 5 | -------------------------------------------------------------------------------- /External/EigenOld/src/Core/arch/Default/CMakeLists.txt: -------------------------------------------------------------------------------- 1 | FILE(GLOB Eigen_Core_arch_Default_SRCS "*.h") 2 | 3 | INSTALL(FILES 4 | ${Eigen_Core_arch_Default_SRCS} 5 | DESTINATION ${INCLUDE_INSTALL_DIR}/Eigen/src/Core/arch/Default COMPONENT Devel 6 | ) 7 | -------------------------------------------------------------------------------- /External/EigenOld/src/Core/arch/NEON/CMakeLists.txt: -------------------------------------------------------------------------------- 1 | FILE(GLOB Eigen_Core_arch_NEON_SRCS "*.h") 2 | 3 | INSTALL(FILES 4 | ${Eigen_Core_arch_NEON_SRCS} 5 | DESTINATION ${INCLUDE_INSTALL_DIR}/Eigen/src/Core/arch/NEON COMPONENT Devel 6 | ) 7 | -------------------------------------------------------------------------------- /External/EigenOld/src/Core/arch/SSE/CMakeLists.txt: -------------------------------------------------------------------------------- 1 | FILE(GLOB Eigen_Core_arch_SSE_SRCS "*.h") 2 | 3 | INSTALL(FILES 4 | ${Eigen_Core_arch_SSE_SRCS} 5 | DESTINATION ${INCLUDE_INSTALL_DIR}/Eigen/src/Core/arch/SSE COMPONENT Devel 6 | ) 7 | -------------------------------------------------------------------------------- /External/EigenOld/src/Core/products/CMakeLists.txt: -------------------------------------------------------------------------------- 1 | FILE(GLOB Eigen_Core_Product_SRCS "*.h") 2 | 3 | INSTALL(FILES 4 | ${Eigen_Core_Product_SRCS} 5 | DESTINATION ${INCLUDE_INSTALL_DIR}/Eigen/src/Core/products COMPONENT Devel 6 | ) 7 | -------------------------------------------------------------------------------- /External/EigenOld/src/Core/util/CMakeLists.txt: -------------------------------------------------------------------------------- 1 | FILE(GLOB Eigen_Core_util_SRCS "*.h") 2 | 3 | INSTALL(FILES 4 | ${Eigen_Core_util_SRCS} 5 | DESTINATION ${INCLUDE_INSTALL_DIR}/Eigen/src/Core/util COMPONENT Devel 6 | ) 7 | -------------------------------------------------------------------------------- /External/EigenOld/src/Core/util/EnableMSVCWarnings.h: -------------------------------------------------------------------------------- 1 | 2 | #ifdef _MSC_VER 3 | #pragma warning( pop ) 4 | #endif 5 | -------------------------------------------------------------------------------- /External/EigenOld/src/Eigen2Support/CMakeLists.txt: -------------------------------------------------------------------------------- 1 | FILE(GLOB Eigen_Eigen2Support_SRCS "*.h") 2 | 3 | INSTALL(FILES 4 | ${Eigen_Eigen2Support_SRCS} 5 | DESTINATION ${INCLUDE_INSTALL_DIR}/Eigen/src/Eigen2Support COMPONENT Devel 6 | ) 7 | -------------------------------------------------------------------------------- /External/EigenOld/src/Eigenvalues/CMakeLists.txt: -------------------------------------------------------------------------------- 1 | FILE(GLOB Eigen_EIGENVALUES_SRCS "*.h") 2 | 3 | INSTALL(FILES 4 | ${Eigen_EIGENVALUES_SRCS} 5 | DESTINATION ${INCLUDE_INSTALL_DIR}/Eigen/src/Eigenvalues COMPONENT Devel 6 | ) 7 | -------------------------------------------------------------------------------- /External/EigenOld/src/Geometry/CMakeLists.txt: -------------------------------------------------------------------------------- 1 | FILE(GLOB Eigen_Geometry_SRCS "*.h") 2 | 3 | INSTALL(FILES 4 | ${Eigen_Geometry_SRCS} 5 | DESTINATION ${INCLUDE_INSTALL_DIR}/Eigen/src/Geometry COMPONENT Devel 6 | ) 7 | 8 | ADD_SUBDIRECTORY(arch) 9 | -------------------------------------------------------------------------------- /External/EigenOld/src/Geometry/arch/CMakeLists.txt: -------------------------------------------------------------------------------- 1 | FILE(GLOB Eigen_Geometry_arch_SRCS "*.h") 2 | 3 | INSTALL(FILES 4 | ${Eigen_Geometry_arch_SRCS} 5 | DESTINATION ${INCLUDE_INSTALL_DIR}/Eigen/src/Geometry/arch COMPONENT Devel 6 | ) 7 | -------------------------------------------------------------------------------- /External/EigenOld/src/Householder/CMakeLists.txt: -------------------------------------------------------------------------------- 1 | FILE(GLOB Eigen_Householder_SRCS "*.h") 2 | 3 | INSTALL(FILES 4 | ${Eigen_Householder_SRCS} 5 | DESTINATION ${INCLUDE_INSTALL_DIR}/Eigen/src/Householder COMPONENT Devel 6 | ) 7 | -------------------------------------------------------------------------------- /External/EigenOld/src/Jacobi/CMakeLists.txt: -------------------------------------------------------------------------------- 1 | FILE(GLOB Eigen_Jacobi_SRCS "*.h") 2 | 3 | INSTALL(FILES 4 | ${Eigen_Jacobi_SRCS} 5 | DESTINATION ${INCLUDE_INSTALL_DIR}/Eigen/src/Jacobi COMPONENT Devel 6 | ) 7 | -------------------------------------------------------------------------------- /External/EigenOld/src/LU/CMakeLists.txt: -------------------------------------------------------------------------------- 1 | FILE(GLOB Eigen_LU_SRCS "*.h") 2 | 3 | INSTALL(FILES 4 | ${Eigen_LU_SRCS} 5 | DESTINATION ${INCLUDE_INSTALL_DIR}/Eigen/src/LU COMPONENT Devel 6 | ) 7 | 8 | ADD_SUBDIRECTORY(arch) 9 | -------------------------------------------------------------------------------- /External/EigenOld/src/LU/arch/CMakeLists.txt: -------------------------------------------------------------------------------- 1 | FILE(GLOB Eigen_LU_arch_SRCS "*.h") 2 | 3 | INSTALL(FILES 4 | ${Eigen_LU_arch_SRCS} 5 | DESTINATION ${INCLUDE_INSTALL_DIR}/Eigen/src/LU/arch COMPONENT Devel 6 | ) 7 | -------------------------------------------------------------------------------- /External/EigenOld/src/QR/CMakeLists.txt: -------------------------------------------------------------------------------- 1 | FILE(GLOB Eigen_QR_SRCS "*.h") 2 | 3 | INSTALL(FILES 4 | ${Eigen_QR_SRCS} 5 | DESTINATION ${INCLUDE_INSTALL_DIR}/Eigen/src/QR COMPONENT Devel 6 | ) 7 | -------------------------------------------------------------------------------- /External/EigenOld/src/SVD/CMakeLists.txt: -------------------------------------------------------------------------------- 1 | FILE(GLOB Eigen_SVD_SRCS "*.h") 2 | 3 | INSTALL(FILES 4 | ${Eigen_SVD_SRCS} 5 | DESTINATION ${INCLUDE_INSTALL_DIR}/Eigen/src/SVD COMPONENT Devel 6 | ) 7 | -------------------------------------------------------------------------------- /External/EigenOld/src/Sparse/CMakeLists.txt: -------------------------------------------------------------------------------- 1 | FILE(GLOB Eigen_Sparse_SRCS "*.h") 2 | 3 | INSTALL(FILES 4 | ${Eigen_Sparse_SRCS} 5 | DESTINATION ${INCLUDE_INSTALL_DIR}/Eigen/src/Sparse COMPONENT Devel 6 | ) 7 | 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${Eigen_misc_SRCS} 5 | DESTINATION ${INCLUDE_INSTALL_DIR}/Eigen/src/misc COMPONENT Devel 6 | ) 7 | -------------------------------------------------------------------------------- /External/EigenOld/src/plugins/CMakeLists.txt: -------------------------------------------------------------------------------- 1 | FILE(GLOB Eigen_plugins_SRCS "*.h") 2 | 3 | INSTALL(FILES 4 | ${Eigen_plugins_SRCS} 5 | DESTINATION ${INCLUDE_INSTALL_DIR}/Eigen/src/plugins COMPONENT Devel 6 | ) 7 | -------------------------------------------------------------------------------- /External/EigenOld/unsupported/CMakeLists.txt: -------------------------------------------------------------------------------- 1 | add_subdirectory(Eigen) 2 | -------------------------------------------------------------------------------- /External/EigenOld/unsupported/Eigen/CMakeLists.txt: -------------------------------------------------------------------------------- 1 | set(Eigen_HEADERS IterativeSolvers) 2 | 3 | install(FILES 4 | ${Eigen_HEADERS} 5 | DESTINATION ${INCLUDE_INSTALL_DIR}/unsupported/Eigen COMPONENT Devel 6 | ) 7 | 8 | add_subdirectory(src) 9 | -------------------------------------------------------------------------------- /External/EigenOld/unsupported/Eigen/src/CMakeLists.txt: -------------------------------------------------------------------------------- 1 | ADD_SUBDIRECTORY(IterativeSolvers) 2 | -------------------------------------------------------------------------------- /External/EigenOld/unsupported/Eigen/src/IterativeSolvers/CMakeLists.txt: -------------------------------------------------------------------------------- 1 | FILE(GLOB Eigen_IterativeSolvers_SRCS "*.h") 2 | 3 | INSTALL(FILES 4 | ${Eigen_IterativeSolvers_SRCS} 5 | DESTINATION ${INCLUDE_INSTALL_DIR}/unsupported/Eigen/src/IterativeSolvers COMPONENT Devel 6 | ) 7 | -------------------------------------------------------------------------------- /External/alglib/manual.cpp.html: 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-------------------------------------------------------------------------------- 1 | include_directories(./include) 2 | 3 | add_library(csv_parser STATIC csv_parser.cpp) 4 | 5 | #INSTALL(TARGETS peerlib 6 | # ARCHIVE DESTINATION lib 7 | # LIBRARY DESTINATION lib) 8 | -------------------------------------------------------------------------------- /External/googletest-read-only/build-aux/.keep: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PMBio/peer/40bc4b2cd92459ce42f44dfe279717436395f3f6/External/googletest-read-only/build-aux/.keep -------------------------------------------------------------------------------- /External/googletest-read-only/build-aux/.svn/all-wcprops: -------------------------------------------------------------------------------- 1 | K 25 2 | svn:wc:ra_dav:version-url 3 | V 33 4 | /svn/!svn/ver/154/trunk/build-aux 5 | END 6 | .keep 7 | K 25 8 | svn:wc:ra_dav:version-url 9 | V 39 10 | /svn/!svn/ver/154/trunk/build-aux/.keep 11 | END 12 | -------------------------------------------------------------------------------- /External/googletest-read-only/build-aux/.svn/text-base/.keep.svn-base: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PMBio/peer/40bc4b2cd92459ce42f44dfe279717436395f3f6/External/googletest-read-only/build-aux/.svn/text-base/.keep.svn-base -------------------------------------------------------------------------------- /External/googletest-read-only/cmake/.svn/all-wcprops: -------------------------------------------------------------------------------- 1 | K 25 2 | svn:wc:ra_dav:version-url 3 | V 29 4 | /svn/!svn/ver/489/trunk/cmake 5 | END 6 | internal_utils.cmake 7 | K 25 8 | svn:wc:ra_dav:version-url 9 | V 50 10 | /svn/!svn/ver/489/trunk/cmake/internal_utils.cmake 11 | END 12 | -------------------------------------------------------------------------------- /External/googletest-read-only/codegear/.svn/prop-base/gtest.cbproj.svn-base: -------------------------------------------------------------------------------- 1 | K 13 2 | svn:eol-style 3 | V 4 4 | CRLF 5 | END 6 | -------------------------------------------------------------------------------- /External/googletest-read-only/codegear/.svn/prop-base/gtest.groupproj.svn-base: -------------------------------------------------------------------------------- 1 | K 13 2 | svn:eol-style 3 | V 4 4 | CRLF 5 | END 6 | -------------------------------------------------------------------------------- /External/googletest-read-only/codegear/.svn/prop-base/gtest_all.cc.svn-base: -------------------------------------------------------------------------------- 1 | K 13 2 | svn:eol-style 3 | V 4 4 | CRLF 5 | END 6 | -------------------------------------------------------------------------------- /External/googletest-read-only/codegear/.svn/prop-base/gtest_link.cc.svn-base: -------------------------------------------------------------------------------- 1 | K 13 2 | svn:eol-style 3 | V 4 4 | CRLF 5 | END 6 | -------------------------------------------------------------------------------- /External/googletest-read-only/codegear/.svn/prop-base/gtest_main.cbproj.svn-base: -------------------------------------------------------------------------------- 1 | K 13 2 | svn:eol-style 3 | V 4 4 | CRLF 5 | END 6 | -------------------------------------------------------------------------------- /External/googletest-read-only/codegear/.svn/prop-base/gtest_unittest.cbproj.svn-base: -------------------------------------------------------------------------------- 1 | K 13 2 | svn:eol-style 3 | V 4 4 | CRLF 5 | END 6 | -------------------------------------------------------------------------------- /External/googletest-read-only/include/.svn/all-wcprops: -------------------------------------------------------------------------------- 1 | K 25 2 | svn:wc:ra_dav:version-url 3 | V 31 4 | /svn/!svn/ver/503/trunk/include 5 | END 6 | -------------------------------------------------------------------------------- /External/googletest-read-only/include/.svn/entries: -------------------------------------------------------------------------------- 1 | 10 2 | 3 | dir 4 | 512 5 | http://googletest.googlecode.com/svn/trunk/include 6 | http://googletest.googlecode.com/svn 7 | 8 | 9 | 10 | 2010-10-22T01:33:11.572130Z 11 | 503 12 | vladlosev 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | 23 | 24 | 25 | 26 | 27 | 861a406c-534a-0410-8894-cb66d6ee9925 28 | 29 | gtest 30 | dir 31 | 32 | -------------------------------------------------------------------------------- /External/googletest-read-only/m4/.svn/all-wcprops: -------------------------------------------------------------------------------- 1 | K 25 2 | svn:wc:ra_dav:version-url 3 | V 26 4 | /svn/!svn/ver/244/trunk/m4 5 | END 6 | acx_pthread.m4 7 | K 25 8 | svn:wc:ra_dav:version-url 9 | V 41 10 | /svn/!svn/ver/244/trunk/m4/acx_pthread.m4 11 | END 12 | gtest.m4 13 | K 25 14 | svn:wc:ra_dav:version-url 15 | V 35 16 | /svn/!svn/ver/155/trunk/m4/gtest.m4 17 | END 18 | -------------------------------------------------------------------------------- /External/googletest-read-only/make/.svn/all-wcprops: -------------------------------------------------------------------------------- 1 | K 25 2 | svn:wc:ra_dav:version-url 3 | V 28 4 | /svn/!svn/ver/415/trunk/make 5 | END 6 | Makefile 7 | K 25 8 | svn:wc:ra_dav:version-url 9 | V 37 10 | /svn/!svn/ver/415/trunk/make/Makefile 11 | END 12 | -------------------------------------------------------------------------------- /External/googletest-read-only/msvc/.svn/prop-base/gtest-md.sln.svn-base: -------------------------------------------------------------------------------- 1 | K 13 2 | svn:eol-style 3 | V 4 4 | CRLF 5 | END 6 | -------------------------------------------------------------------------------- /External/googletest-read-only/msvc/.svn/prop-base/gtest-md.vcproj.svn-base: -------------------------------------------------------------------------------- 1 | K 13 2 | svn:eol-style 3 | V 4 4 | CRLF 5 | END 6 | -------------------------------------------------------------------------------- /External/googletest-read-only/msvc/.svn/prop-base/gtest.sln.svn-base: -------------------------------------------------------------------------------- 1 | K 13 2 | svn:eol-style 3 | V 4 4 | CRLF 5 | END 6 | -------------------------------------------------------------------------------- /External/googletest-read-only/msvc/.svn/prop-base/gtest.vcproj.svn-base: -------------------------------------------------------------------------------- 1 | K 13 2 | svn:eol-style 3 | V 4 4 | CRLF 5 | END 6 | -------------------------------------------------------------------------------- /External/googletest-read-only/msvc/.svn/prop-base/gtest_main-md.vcproj.svn-base: -------------------------------------------------------------------------------- 1 | K 13 2 | svn:eol-style 3 | V 4 4 | CRLF 5 | END 6 | -------------------------------------------------------------------------------- /External/googletest-read-only/msvc/.svn/prop-base/gtest_main.vcproj.svn-base: -------------------------------------------------------------------------------- 1 | K 13 2 | svn:eol-style 3 | V 4 4 | CRLF 5 | END 6 | -------------------------------------------------------------------------------- /External/googletest-read-only/msvc/.svn/prop-base/gtest_prod_test-md.vcproj.svn-base: -------------------------------------------------------------------------------- 1 | K 13 2 | svn:eol-style 3 | V 4 4 | CRLF 5 | END 6 | -------------------------------------------------------------------------------- /External/googletest-read-only/msvc/.svn/prop-base/gtest_prod_test.vcproj.svn-base: -------------------------------------------------------------------------------- 1 | K 13 2 | svn:eol-style 3 | V 4 4 | CRLF 5 | END 6 | -------------------------------------------------------------------------------- /External/googletest-read-only/msvc/.svn/prop-base/gtest_unittest-md.vcproj.svn-base: -------------------------------------------------------------------------------- 1 | K 13 2 | svn:eol-style 3 | V 4 4 | CRLF 5 | END 6 | -------------------------------------------------------------------------------- /External/googletest-read-only/msvc/.svn/prop-base/gtest_unittest.vcproj.svn-base: -------------------------------------------------------------------------------- 1 | K 13 2 | svn:eol-style 3 | V 4 4 | CRLF 5 | END 6 | -------------------------------------------------------------------------------- /External/googletest-read-only/scons/.svn/all-wcprops: -------------------------------------------------------------------------------- 1 | K 25 2 | svn:wc:ra_dav:version-url 3 | V 29 4 | /svn/!svn/ver/380/trunk/scons 5 | END 6 | -------------------------------------------------------------------------------- /External/googletest-read-only/scons/.svn/entries: -------------------------------------------------------------------------------- 1 | 10 2 | 3 | dir 4 | 512 5 | http://googletest.googlecode.com/svn/trunk/scons 6 | http://googletest.googlecode.com/svn 7 | 8 | 9 | 10 | 2010-02-25T22:20:45.344482Z 11 | 380 12 | zhanyong.wan 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | 23 | 24 | 25 | 26 | 27 | 861a406c-534a-0410-8894-cb66d6ee9925 28 | 29 | -------------------------------------------------------------------------------- /External/googletest-read-only/scripts/.svn/prop-base/fuse_gtest_files.py.svn-base: -------------------------------------------------------------------------------- 1 | K 14 2 | svn:executable 3 | V 1 4 | * 5 | END 6 | -------------------------------------------------------------------------------- /External/googletest-read-only/scripts/.svn/prop-base/gen_gtest_pred_impl.py.svn-base: -------------------------------------------------------------------------------- 1 | K 14 2 | svn:executable 3 | V 0 4 | 5 | END 6 | -------------------------------------------------------------------------------- /External/googletest-read-only/scripts/.svn/prop-base/gtest-config.in.svn-base: -------------------------------------------------------------------------------- 1 | K 14 2 | svn:executable 3 | V 0 4 | 5 | END 6 | -------------------------------------------------------------------------------- /External/googletest-read-only/scripts/.svn/prop-base/pump.py.svn-base: -------------------------------------------------------------------------------- 1 | K 14 2 | svn:executable 3 | V 1 4 | * 5 | END 6 | -------------------------------------------------------------------------------- /External/googletest-read-only/scripts/.svn/prop-base/upload.py.svn-base: -------------------------------------------------------------------------------- 1 | K 14 2 | svn:executable 3 | V 1 4 | * 5 | END 6 | -------------------------------------------------------------------------------- /External/googletest-read-only/scripts/.svn/prop-base/upload_gtest.py.svn-base: -------------------------------------------------------------------------------- 1 | K 14 2 | svn:executable 3 | V 1 4 | * 5 | END 6 | -------------------------------------------------------------------------------- /External/googletest-read-only/scripts/test/.svn/all-wcprops: -------------------------------------------------------------------------------- 1 | K 25 2 | svn:wc:ra_dav:version-url 3 | V 36 4 | /svn/!svn/ver/177/trunk/scripts/test 5 | END 6 | Makefile 7 | K 25 8 | svn:wc:ra_dav:version-url 9 | V 45 10 | /svn/!svn/ver/177/trunk/scripts/test/Makefile 11 | END 12 | -------------------------------------------------------------------------------- /External/googletest-read-only/test/.svn/prop-base/gtest_break_on_failure_unittest.py.svn-base: -------------------------------------------------------------------------------- 1 | K 14 2 | svn:executable 3 | V 0 4 | 5 | END 6 | -------------------------------------------------------------------------------- /External/googletest-read-only/test/.svn/prop-base/gtest_catch_exceptions_test.py.svn-base: -------------------------------------------------------------------------------- 1 | K 14 2 | svn:executable 3 | V 1 4 | * 5 | END 6 | -------------------------------------------------------------------------------- /External/googletest-read-only/test/.svn/prop-base/gtest_color_test.py.svn-base: -------------------------------------------------------------------------------- 1 | K 14 2 | svn:executable 3 | V 0 4 | 5 | END 6 | -------------------------------------------------------------------------------- /External/googletest-read-only/test/.svn/prop-base/gtest_env_var_test.py.svn-base: -------------------------------------------------------------------------------- 1 | K 14 2 | svn:executable 3 | V 0 4 | 5 | END 6 | -------------------------------------------------------------------------------- /External/googletest-read-only/test/.svn/prop-base/gtest_filter_unittest.py.svn-base: -------------------------------------------------------------------------------- 1 | K 14 2 | svn:executable 3 | V 0 4 | 5 | END 6 | -------------------------------------------------------------------------------- /External/googletest-read-only/test/.svn/prop-base/gtest_help_test.py.svn-base: -------------------------------------------------------------------------------- 1 | K 14 2 | svn:executable 3 | V 1 4 | * 5 | END 6 | -------------------------------------------------------------------------------- /External/googletest-read-only/test/.svn/prop-base/gtest_list_tests_unittest.py.svn-base: -------------------------------------------------------------------------------- 1 | K 14 2 | svn:executable 3 | V 0 4 | 5 | END 6 | -------------------------------------------------------------------------------- /External/googletest-read-only/test/.svn/prop-base/gtest_nc_test.py.svn-base: -------------------------------------------------------------------------------- 1 | K 14 2 | svn:executable 3 | V 0 4 | 5 | END 6 | -------------------------------------------------------------------------------- /External/googletest-read-only/test/.svn/prop-base/gtest_output_test.py.svn-base: -------------------------------------------------------------------------------- 1 | K 14 2 | svn:executable 3 | V 0 4 | 5 | END 6 | -------------------------------------------------------------------------------- /External/googletest-read-only/test/.svn/prop-base/gtest_shuffle_test.py.svn-base: -------------------------------------------------------------------------------- 1 | K 14 2 | svn:executable 3 | V 1 4 | * 5 | END 6 | -------------------------------------------------------------------------------- /External/googletest-read-only/test/.svn/prop-base/gtest_test_utils.py.svn-base: -------------------------------------------------------------------------------- 1 | K 14 2 | svn:executable 3 | V 0 4 | 5 | END 6 | -------------------------------------------------------------------------------- /External/googletest-read-only/test/.svn/prop-base/gtest_throw_on_failure_test.py.svn-base: -------------------------------------------------------------------------------- 1 | K 14 2 | svn:executable 3 | V 1 4 | * 5 | END 6 | -------------------------------------------------------------------------------- /External/googletest-read-only/test/.svn/prop-base/gtest_uninitialized_test.py.svn-base: -------------------------------------------------------------------------------- 1 | K 14 2 | svn:executable 3 | V 0 4 | 5 | END 6 | -------------------------------------------------------------------------------- /External/googletest-read-only/test/.svn/prop-base/gtest_xml_outfiles_test.py.svn-base: -------------------------------------------------------------------------------- 1 | K 14 2 | svn:executable 3 | V 0 4 | 5 | END 6 | -------------------------------------------------------------------------------- /External/googletest-read-only/test/.svn/prop-base/gtest_xml_output_unittest.py.svn-base: -------------------------------------------------------------------------------- 1 | K 14 2 | svn:executable 3 | V 0 4 | 5 | END 6 | -------------------------------------------------------------------------------- /External/googletest-read-only/test/.svn/prop-base/gtest_xml_test_utils.py.svn-base: -------------------------------------------------------------------------------- 1 | K 14 2 | svn:executable 3 | V 0 4 | 5 | END 6 | -------------------------------------------------------------------------------- /External/googletest-read-only/xcode/.svn/all-wcprops: -------------------------------------------------------------------------------- 1 | K 25 2 | svn:wc:ra_dav:version-url 3 | V 29 4 | /svn/!svn/ver/493/trunk/xcode 5 | END 6 | -------------------------------------------------------------------------------- /External/googletest-read-only/xcode/Config/.svn/text-base/TestTarget.xcconfig.svn-base: -------------------------------------------------------------------------------- 1 | // 2 | // TestTarget.xcconfig 3 | // 4 | // These are Test target settings for the gtest framework and examples. It 5 | // is set in the "Based On:" dropdown in the "Target" info dialog. 6 | 7 | PRODUCT_NAME = $(TARGET_NAME) 8 | HEADER_SEARCH_PATHS = ../include 9 | -------------------------------------------------------------------------------- /External/googletest-read-only/xcode/Config/TestTarget.xcconfig: -------------------------------------------------------------------------------- 1 | // 2 | // TestTarget.xcconfig 3 | // 4 | // These are Test target settings for the gtest framework and examples. It 5 | // is set in the "Based On:" dropdown in the "Target" info dialog. 6 | 7 | PRODUCT_NAME = $(TARGET_NAME) 8 | HEADER_SEARCH_PATHS = ../include 9 | -------------------------------------------------------------------------------- /External/googletest-read-only/xcode/Resources/.svn/all-wcprops: -------------------------------------------------------------------------------- 1 | K 25 2 | svn:wc:ra_dav:version-url 3 | V 38 4 | /svn/!svn/ver/67/trunk/xcode/Resources 5 | END 6 | Info.plist 7 | K 25 8 | svn:wc:ra_dav:version-url 9 | V 49 10 | /svn/!svn/ver/67/trunk/xcode/Resources/Info.plist 11 | END 12 | -------------------------------------------------------------------------------- /External/googletest-read-only/xcode/Samples/.svn/all-wcprops: -------------------------------------------------------------------------------- 1 | K 25 2 | svn:wc:ra_dav:version-url 3 | V 37 4 | /svn/!svn/ver/482/trunk/xcode/Samples 5 | END 6 | -------------------------------------------------------------------------------- /External/googletest-read-only/xcode/Samples/.svn/entries: -------------------------------------------------------------------------------- 1 | 10 2 | 3 | dir 4 | 512 5 | http://googletest.googlecode.com/svn/trunk/xcode/Samples 6 | http://googletest.googlecode.com/svn 7 | 8 | 9 | 10 | 2010-09-14T05:35:59.978590Z 11 | 482 12 | zhanyong.wan 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | 23 | 24 | 25 | 26 | 27 | 861a406c-534a-0410-8894-cb66d6ee9925 28 | 29 | FrameworkSample 30 | dir 31 | 32 | -------------------------------------------------------------------------------- /External/googletest-read-only/xcode/Samples/FrameworkSample/WidgetFramework.xcodeproj/.svn/all-wcprops: -------------------------------------------------------------------------------- 1 | K 25 2 | svn:wc:ra_dav:version-url 3 | V 79 4 | /svn/!svn/ver/385/trunk/xcode/Samples/FrameworkSample/WidgetFramework.xcodeproj 5 | END 6 | project.pbxproj 7 | K 25 8 | svn:wc:ra_dav:version-url 9 | V 95 10 | /svn/!svn/ver/385/trunk/xcode/Samples/FrameworkSample/WidgetFramework.xcodeproj/project.pbxproj 11 | END 12 | -------------------------------------------------------------------------------- /External/googletest-read-only/xcode/Scripts/.svn/all-wcprops: -------------------------------------------------------------------------------- 1 | K 25 2 | svn:wc:ra_dav:version-url 3 | V 37 4 | /svn/!svn/ver/358/trunk/xcode/Scripts 5 | END 6 | runtests.sh 7 | K 25 8 | svn:wc:ra_dav:version-url 9 | V 49 10 | /svn/!svn/ver/358/trunk/xcode/Scripts/runtests.sh 11 | END 12 | versiongenerate.py 13 | K 25 14 | svn:wc:ra_dav:version-url 15 | V 56 16 | /svn/!svn/ver/358/trunk/xcode/Scripts/versiongenerate.py 17 | END 18 | -------------------------------------------------------------------------------- /External/googletest-read-only/xcode/gtest.xcodeproj/.svn/all-wcprops: -------------------------------------------------------------------------------- 1 | K 25 2 | svn:wc:ra_dav:version-url 3 | V 45 4 | /svn/!svn/ver/493/trunk/xcode/gtest.xcodeproj 5 | END 6 | project.pbxproj 7 | K 25 8 | svn:wc:ra_dav:version-url 9 | V 61 10 | /svn/!svn/ver/493/trunk/xcode/gtest.xcodeproj/project.pbxproj 11 | END 12 | -------------------------------------------------------------------------------- /External/gtest.framework/Headers: -------------------------------------------------------------------------------- 1 | Versions/Current/Headers -------------------------------------------------------------------------------- /External/gtest.framework/Resources: -------------------------------------------------------------------------------- 1 | Versions/Current/Resources -------------------------------------------------------------------------------- /External/gtest.framework/Versions/A/Resources/libgtest_main.a: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PMBio/peer/40bc4b2cd92459ce42f44dfe279717436395f3f6/External/gtest.framework/Versions/A/Resources/libgtest_main.a -------------------------------------------------------------------------------- /External/gtest.framework/Versions/A/gtest: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PMBio/peer/40bc4b2cd92459ce42f44dfe279717436395f3f6/External/gtest.framework/Versions/A/gtest -------------------------------------------------------------------------------- /External/gtest.framework/Versions/Current: -------------------------------------------------------------------------------- 1 | A -------------------------------------------------------------------------------- /External/gtest.framework/gtest: -------------------------------------------------------------------------------- 1 | Versions/Current/gtest -------------------------------------------------------------------------------- /External/yaml-cpp/include/yaml.h: -------------------------------------------------------------------------------- 1 | #pragma once 2 | 3 | #ifndef YAML_H_62B23520_7C8E_11DE_8A39_0800200C9A66 4 | #define YAML_H_62B23520_7C8E_11DE_8A39_0800200C9A66 5 | 6 | 7 | #include "parser.h" 8 | #include "node.h" 9 | #include "stlnode.h" 10 | #include "iterator.h" 11 | #include "emitter.h" 12 | #include "stlemitter.h" 13 | #include "exceptions.h" 14 | 15 | #endif // YAML_H_62B23520_7C8E_11DE_8A39_0800200C9A66 16 | -------------------------------------------------------------------------------- /External/yaml-cpp/src/ltnode.h: -------------------------------------------------------------------------------- 1 | #pragma once 2 | 3 | #ifndef LTNODE_H_62B23520_7C8E_11DE_8A39_0800200C9A66 4 | #define LTNODE_H_62B23520_7C8E_11DE_8A39_0800200C9A66 5 | 6 | 7 | namespace YAML 8 | { 9 | class Node; 10 | 11 | struct ltnode { 12 | bool operator()(const Node *pNode1, const Node *pNode2) const; 13 | }; 14 | } 15 | 16 | #endif // LTNODE_H_62B23520_7C8E_11DE_8A39_0800200C9A66 17 | -------------------------------------------------------------------------------- /External/yaml-cpp/src/null.cpp: -------------------------------------------------------------------------------- 1 | #include "null.h" 2 | #include "node.h" 3 | 4 | namespace YAML 5 | { 6 | _Null Null; 7 | 8 | bool IsNull(const Node& node) 9 | { 10 | return node.Read(Null); 11 | } 12 | } 13 | -------------------------------------------------------------------------------- /External/yaml-cpp/test/CMakeLists.txt: -------------------------------------------------------------------------------- 1 | file(GLOB test_headers [a-z]*.h) 2 | file(GLOB test_sources [a-z]*.cpp) 3 | 4 | add_executable(run-tests 5 | ${test_sources} 6 | ${test_headers} 7 | ) 8 | target_link_libraries(run-tests yaml-cpp) 9 | 10 | add_test(yaml-reader-test run-tests) 11 | -------------------------------------------------------------------------------- /External/yaml-cpp/test/emittertests.h: -------------------------------------------------------------------------------- 1 | #pragma once 2 | 3 | #ifndef EMITTERTESTS_H_62B23520_7C8E_11DE_8A39_0800200C9A66 4 | #define EMITTERTESTS_H_62B23520_7C8E_11DE_8A39_0800200C9A66 5 | 6 | namespace Test { 7 | bool RunEmitterTests(); 8 | } 9 | 10 | #endif // EMITTERTESTS_H_62B23520_7C8E_11DE_8A39_0800200C9A66 11 | 12 | -------------------------------------------------------------------------------- /External/yaml-cpp/test/main.cpp: -------------------------------------------------------------------------------- 1 | #include "tests.h" 2 | 3 | int main() 4 | { 5 | Test::RunAll(); 6 | return 0; 7 | } 8 | -------------------------------------------------------------------------------- /External/yaml-cpp/test/parsertests.h: -------------------------------------------------------------------------------- 1 | #pragma once 2 | 3 | #ifndef PARSERTESTS_H_62B23520_7C8E_11DE_8A39_0800200C9A66 4 | #define PARSERTESTS_H_62B23520_7C8E_11DE_8A39_0800200C9A66 5 | 6 | namespace Test { 7 | bool RunParserTests(); 8 | } 9 | 10 | #endif // PARSERTESTS_H_62B23520_7C8E_11DE_8A39_0800200C9A66 11 | 12 | -------------------------------------------------------------------------------- /External/yaml-cpp/test/spectests.h: -------------------------------------------------------------------------------- 1 | #pragma once 2 | 3 | #ifndef SPECTESTS_H_62B23520_7C8E_11DE_8A39_0800200C9A66 4 | #define SPECTESTS_H_62B23520_7C8E_11DE_8A39_0800200C9A66 5 | 6 | namespace Test { 7 | bool RunSpecTests(); 8 | } 9 | 10 | #endif // SPECTESTS_H_62B23520_7C8E_11DE_8A39_0800200C9A66 11 | 12 | -------------------------------------------------------------------------------- /External/yaml-cpp/util/CMakeLists.txt: -------------------------------------------------------------------------------- 1 | add_executable(parse parse.cpp) 2 | target_link_libraries(parse yaml-cpp) 3 | -------------------------------------------------------------------------------- /External/yaml-cpp/yaml-cpp.pc.cmake: -------------------------------------------------------------------------------- 1 | prefix=@CMAKE_INSTALL_PREFIX@ 2 | exec_prefix=@CMAKE_INSTALL_PREFIX@ 3 | libdir=${prefix}/@LIB_INSTALL_DIR@ 4 | includedir=${prefix}/@INCLUDE_INSTALL_DIR@ 5 | 6 | Name: Yaml-cpp 7 | Description: A YAML parser and emitter for C++ 8 | Version: @YAML_CPP_VERSION@ 9 | Requires: 10 | Libs: -L${libdir} -lyaml-cpp 11 | Cflags: -I${includedir} 12 | -------------------------------------------------------------------------------- /INSTALL.txt: -------------------------------------------------------------------------------- 1 | ./README.txt -------------------------------------------------------------------------------- /R/Makefile: -------------------------------------------------------------------------------- 1 | INTERFACES = peer.i 2 | WRAPPERS = $(INTERFACES:.i=_wrap.cpp) 3 | PROXIES = $(INTERFACES:.i=.py ) 4 | 5 | all: peer_wrap.cpp 6 | R CMD SHLIB peer_wrap.cpp 7 | 8 | peer_wrap.cpp: peer.i 9 | swig -c++ -r -o peer_wrap.cpp -I../include -I../External -I.. peer.i 10 | 11 | clean: 12 | $(RM) ./peer_wrap.so 13 | $(RM) $(WRAPPERS) 14 | $(RM) $(PROXIES) 15 | -------------------------------------------------------------------------------- /R/Makevars: -------------------------------------------------------------------------------- 1 | PKG_LIBS=-L./lib -lpeer 2 | PKG_CPPFLAGS= -I ./../External -I .. -DSWIG 3 | -------------------------------------------------------------------------------- /R/lib: -------------------------------------------------------------------------------- 1 | ./../build/Debug -------------------------------------------------------------------------------- /R/peer/NAMESPACE: -------------------------------------------------------------------------------- 1 | useDynLib(peer) 2 | exportPattern("^PEER") 3 | exportPattern("^etVerbose")#get/setVerbose 4 | -------------------------------------------------------------------------------- /R/peer/R/firstlib.R: -------------------------------------------------------------------------------- 1 | .First.lib <- function(lib, pkg) { 2 | library.dynam("peer", pkg, lib) 3 | } 4 | -------------------------------------------------------------------------------- /R/peer/src/Makevars: -------------------------------------------------------------------------------- 1 | PKG_LIBS=-L./../../../src -lpeerlib -L./../../../External/alglib/src -lalglib 2 | PKG_CPPFLAGS=-I./../../../../include -I./../../../../External/alglib -I./../../../../External/alglib/src -I./../../../../External -DSWIG 3 | -------------------------------------------------------------------------------- /README.txt: -------------------------------------------------------------------------------- 1 | ./README -------------------------------------------------------------------------------- /cmake/FindPythonInst.cmake: -------------------------------------------------------------------------------- 1 | # Find Python install Directory 2 | 3 | 4 | execute_process( 5 | COMMAND 6 | ${PYTHON_EXECUTABLE} -c "from distutils import sysconfig; print sysconfig.get_python_lib()" 7 | OUTPUT_VARIABLE PYTHON_INSTDIR 8 | OUTPUT_STRIP_TRAILING_WHITESPACE 9 | ) 10 | 11 | mark_as_advanced (PYTHON_INSTDIR) -------------------------------------------------------------------------------- /cmake/FindPythonInterpWhich.cmake: -------------------------------------------------------------------------------- 1 | # Find Python executable using which 2 | 3 | execute_process( 4 | COMMAND 5 | which python 6 | OUTPUT_VARIABLE PYTHON_EXECUTABLE 7 | OUTPUT_STRIP_TRAILING_WHITESPACE 8 | ) 9 | 10 | mark_as_advanced (PYTHON_EXECUTABLE) -------------------------------------------------------------------------------- /cmake/FindRInterpWhich.cmake: -------------------------------------------------------------------------------- 1 | # Find R executable using which 2 | 3 | execute_process( 4 | COMMAND 5 | which R 6 | OUTPUT_VARIABLE R_EXECUTABLE 7 | OUTPUT_STRIP_TRAILING_WHITESPACE 8 | ) 9 | 10 | mark_as_advanced (R_EXECUTABLE) 11 | -------------------------------------------------------------------------------- /cran/install_package.sh: -------------------------------------------------------------------------------- 1 | #!/bin/sh 2 | 3 | #remove multiarch 4 | R CMD INSTALL --no-multiarch ./peer 5 | -------------------------------------------------------------------------------- /cran/peer_template/R/firstlib.R: -------------------------------------------------------------------------------- 1 | .First.lib <- function(lib, pkg) { 2 | library.dynam("peer", pkg, lib) 3 | } 4 | -------------------------------------------------------------------------------- /cran/peer_template/src/Makevars: -------------------------------------------------------------------------------- 1 | #PKG_CPPFLAGS=-DSWIG -I ./ 2 | PKG_CPPFLAGS= -I ./ 3 | -------------------------------------------------------------------------------- /cran/update_swig.sh: -------------------------------------------------------------------------------- 1 | #!/bin/sh 2 | 3 | #shell script to update the R interface files 4 | #note: this requires that a current version of PEER is build and ready to run using cmake 5 | cp ./../build/R/peer.R ./peer/R 6 | cp ./../build/R/peerR_wrap.cxx ./peer/src/peerR_wrap.cpp 7 | #clean 8 | rm -f ./peer/src/*.o 9 | rm -f ./peer/src/*.so 10 | rm -f ./peer/src-i386/*.o 11 | rm -f ./peer/src-i386/*.so 12 | rm -f ./peer/src-x86_64/*.o 13 | rm -f ./peer/src-x86_64/*.so 14 | -------------------------------------------------------------------------------- /examples/data/._brem_expr.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PMBio/peer/40bc4b2cd92459ce42f44dfe279717436395f3f6/examples/data/._brem_expr.csv -------------------------------------------------------------------------------- /examples/data/._brem_genotype.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PMBio/peer/40bc4b2cd92459ce42f44dfe279717436395f3f6/examples/data/._brem_genotype.csv -------------------------------------------------------------------------------- /examples/data/._brem_yeastract_expr.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PMBio/peer/40bc4b2cd92459ce42f44dfe279717436395f3f6/examples/data/._brem_yeastract_expr.csv -------------------------------------------------------------------------------- /examples/data/._brem_yeastract_prior.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PMBio/peer/40bc4b2cd92459ce42f44dfe279717436395f3f6/examples/data/._brem_yeastract_prior.csv -------------------------------------------------------------------------------- /examples/data/._covs.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PMBio/peer/40bc4b2cd92459ce42f44dfe279717436395f3f6/examples/data/._covs.csv -------------------------------------------------------------------------------- /examples/data/._expression.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PMBio/peer/40bc4b2cd92459ce42f44dfe279717436395f3f6/examples/data/._expression.csv -------------------------------------------------------------------------------- /examples/data/._expression_sparse.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PMBio/peer/40bc4b2cd92459ce42f44dfe279717436395f3f6/examples/data/._expression_sparse.csv -------------------------------------------------------------------------------- /examples/data/._genotypes.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PMBio/peer/40bc4b2cd92459ce42f44dfe279717436395f3f6/examples/data/._genotypes.csv -------------------------------------------------------------------------------- /examples/data/._groundtruth_sparse.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PMBio/peer/40bc4b2cd92459ce42f44dfe279717436395f3f6/examples/data/._groundtruth_sparse.csv -------------------------------------------------------------------------------- /examples/data/._prior_sparse.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PMBio/peer/40bc4b2cd92459ce42f44dfe279717436395f3f6/examples/data/._prior_sparse.csv -------------------------------------------------------------------------------- /examples/data/._simulate_expression.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PMBio/peer/40bc4b2cd92459ce42f44dfe279717436395f3f6/examples/data/._simulate_expression.py -------------------------------------------------------------------------------- /include/main_testing.h: -------------------------------------------------------------------------------- 1 | /* 2 | * main_testing.h 3 | * peer 4 | * 5 | * Created by Oliver Stegle on 3/24/11. 6 | * Copyright 2011 __MyCompanyName__. All rights reserved. 7 | * 8 | */ 9 | 10 | -------------------------------------------------------------------------------- /python/Makefile: -------------------------------------------------------------------------------- 1 | INTERFACES = peer.i 2 | WRAPPERS = $(INTERFACES:.i=_wrap.cxx) 3 | PROXIES = $(INTERFACES:.i=.py ) 4 | 5 | all: $(WRAPPERS) peer_wrap.cxx 6 | ./setup.py build 7 | 8 | %_wrap.cxx: %.i 9 | swig -c++ -python -I../External -I../src -I../include $< 10 | 11 | clean: 12 | $(RM) -r build 13 | $(RM) $(WRAPPERS) 14 | $(RM) $(PROXIES) 15 | -------------------------------------------------------------------------------- /python/get_numpy_include.py: -------------------------------------------------------------------------------- 1 | #! /usr/bin/env python 2 | 3 | # Third-party modules - we depend on numpy for everything 4 | import numpy 5 | 6 | print numpy.get_include() 7 | -------------------------------------------------------------------------------- /python/lib: -------------------------------------------------------------------------------- 1 | ./../build/Debug/ -------------------------------------------------------------------------------- /src/peerutil_main.cpp: -------------------------------------------------------------------------------- 1 | #include "vbfa.h" 2 | #include "peerutil.h" 3 | 4 | using namespace PEER; 5 | 6 | int main (int argc, char * const argv[]) { 7 | sPeerArgs args = parseCmdlineArgs(argc, argv); 8 | cPEER vb = getInstance(args); 9 | vb.update(); 10 | write_output(vb, args); 11 | return 0; 12 | } --------------------------------------------------------------------------------