├── .DS_Store ├── LICENSE ├── README.md ├── doc ├── .DS_Store └── img │ ├── isoseq-barcoding.png │ ├── isoseq-clustering-end-to-end.png │ ├── isoseq-clustering-workflow.pdf │ ├── isoseq-clustering-workflow.png │ ├── isoseq-dedup-end-to-end.png │ ├── isoseq-dedup-faq.png │ ├── isoseq-dedup-workflow.pdf │ ├── isoseq-dedup-workflow.png │ ├── isoseq-performance.png │ ├── isoseq-similar-transcripts.png │ ├── isoseq-tag.pdf │ ├── isoseq-tag.png │ └── isoseq.png ├── docs ├── .DS_Store ├── CNAME ├── _config.yml ├── _includes │ └── head_custom.html ├── _sass │ └── color_schemes │ │ └── custom.scss ├── assets │ └── images │ │ ├── android-chrome-192x192.png │ │ ├── android-chrome-512x512.png │ │ ├── apple-touch-icon.png │ │ ├── favicon-16x16.png │ │ ├── favicon-32x32.png │ │ ├── favicon.ico │ │ └── site.webmanifest ├── changelog.md ├── classification │ ├── categories.md │ ├── index.md │ ├── isoseq-collapse.md │ ├── pigeon-annotation.md │ ├── pigeon-changelog.md │ ├── pigeon-input.md │ ├── pigeon-output.md │ ├── pigeon.md │ └── workflow.md ├── clustering │ ├── cli-workflow.md │ ├── examples.md │ ├── faq.md │ ├── high-level-workflow.md │ ├── index.md │ ├── schematic-workflow.md │ └── smrtbell-barcode-design.md ├── general-faq.md ├── getting-started.md ├── img │ ├── PBMC4k.knee.png │ ├── PBMC4k.percentiles.knee.png │ ├── SMRT_Link_Screenshots_2022-12-22.png │ ├── UMAP_seurat_cells_2022-12-22.png │ ├── collapse-5p-exons.png │ ├── collapse-max-junctions.png │ ├── collapse.png │ ├── deconcat_metrics_2022-12-22.png │ ├── isoseq-barcoding.png │ ├── isoseq-clustering-end-to-end.png │ ├── isoseq-clustering-workflow.pdf │ ├── isoseq-clustering-workflow.png │ ├── isoseq-dedup-end-to-end.png │ ├── isoseq-dedup-faq.pdf │ ├── isoseq-dedup-faq.png │ ├── isoseq-dedup-workflow.pdf │ ├── isoseq-dedup-workflow.png │ ├── isoseq-performance.png │ ├── isoseq-similar-transcripts.png │ ├── isoseq-tag.pdf │ ├── isoseq-tag.png │ ├── isoseq_card.png │ ├── kana_screenshot_2022-12-22.png │ ├── knee-background.png │ ├── knee-pbmcs.png │ ├── knee-samples.png │ ├── pb_colors_categories.png │ ├── pb_colors_fsm.png │ ├── pb_colors_ism.png │ ├── pb_colors_nnc_nic.png │ ├── pigeon-card.png │ └── pigeon-white.png ├── index.md ├── isoseq-tags.md ├── nomenclature.md ├── robots.txt └── umi │ ├── cell-calling.md │ ├── cli-workflow.md │ ├── dedup-faq.md │ ├── examples.md │ ├── high-level-workflow.md │ ├── index.md │ ├── isoseq-bcstats.md │ ├── isoseq-correct.md │ ├── schematic-workflow.md │ ├── tertiary-analysis.md │ ├── troubleshooting.md │ └── umi-barcode-design.md ├── isoseq-clustering.md └── isoseq-deduplication.md /.DS_Store: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/PacificBiosciences/IsoSeq/HEAD/.DS_Store -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- 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